LOCUS KM524354 3182 bp DNA circular VRL 23-DEC-2014 DEFINITION Hepatitis B virus isolate HBV.I-058_HIV-HBV, complete genome. ACCESSION KM524354 VERSION KM524354.1 KEYWORDS . SOURCE Hepatitis B virus ORGANISM Hepatitis B virus Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Blubervirales; Hepadnaviridae; Orthohepadnavirus. REFERENCE 1 (bases 1 to 3182) AUTHORS Mondal,R.K., Khatun,M., Ghosh,S., Banerjee,P., Datta,S., Sarkar,S., Saha,B., Santra,A., Banerjee,S., Chowdhury,A. and Datta,S. TITLE Immune driven adaptation of HBV genotype D pertains to preferential alteration in B-cell epitopes and attenuation in replicative capacity- an insight from HIV-HBV co-infection JOURNAL Unpublished REFERENCE 2 (bases 1 to 3182) AUTHORS Mondal,R.K., Khatun,M., Ghosh,S., Banerjee,P., Datta,S., Sarkar,S., Saha,B., Santra,A., Banerjee,S., Chowdhury,A. and Datta,S. TITLE Direct Submission JOURNAL Submitted (15-SEP-2014) Centre for Liver Research, School of Digestive and Liver Diseases, IPGME&R, Kolkata, 244 A J C Bose Road, Kolkata, West Bengal 700020, India FEATURES Location/Qualifiers source 1..3182 /organism="Hepatitis B virus" /mol_type="genomic DNA" /isolate="HBV.I-058_HIV-HBV" /isolation_source="serum sample of patient with chronic HIV-HBV Coinfection" /host="Homo sapiens" /db_xref="taxon:10407" /geo_loc_name="India" /note="genotype: D" gene join(2307..3182,1..1623) /gene="P" CDS join(2307..3182,1..1623) /gene="P" /codon_start=1 /product="polymerase" /protein_id="AJA30240.1" /translation="MPLSYQHFRRLLLLDDEAGPLEEELPRLADEGLNRRVAEDLNLG NLNVSIPWTHKVGNFTGLYSSTVPVFNPHWKTPSFPDIHLHQDIIKKCEQFVGPLTVN EKRRLQLIMPARFYPNVTKYLPLDKGIKPYYPEHLVNHYFQTRHYLHTLWKAGILYKR ETTRSASFYGSPYSWEQKLQHGAESFHQQSSGILSRPPVGSSLQSKHRKSRLGLQSQQ GHLARRQQGRSWSIRAGIHPTARRPFGVEPSGSGHNTNLANKSTSCIYQSPVRKAAYP AVSTFEKNSSSGHAVELHNLPPNSARSQGERPVFPCWWLQFRNSKPCSDYCLSHIVNL LEDWGPCAEHGEHHIRIPRTPARVTGGVFLVDKNPHNTAESRLVVDFSQFSRGDHRVS WPKFAVPNLQSLTNLLSSNLSWLSLDVSAAFYHLPLHPAAMPHLLVGSSGLSRYVARL SSNSRIFNHQRGTMQNLHDYCSRNLYVSLLLLYQTFGRKLHLYSHPIILGFRKIPMGV GLSPFLLAQFTSAICSVVRRAFPHCLAFSYMDDVVLGAKSVQHLESLFTAVTNFLLSL GIHLNPNKTKRWGYSLNFMGYVIGCYGSLPQDHIIQKIKECFRKLPVNRPIDWKVCQR IVGLLGFAAPFTQCGYPALMPLYACIQSKQAFTFSPTYKAFLCKQYLHLYPVARQRQG LCQVFADATPTGWGLVMGHQRMRGTFLAPLPIHTAELLAACFARSRSGANILGTDNSV VLSRKYTSFPWLLGCAANWILRGTSFVYVPSALNPADDPSRGRLGLSRPLLRLPFRPT TGRTSLYADSPSVPSHLPDRVHFASPLHVAWRPP" gene join(2848..3182,1..835) /gene="S" CDS join(2848..3182,1..835) /gene="S" /note="LHBs" /codon_start=1 /product="large S protein" /protein_id="AJA30241.1" /translation="MGQNLSTSNPLGFFPDHQLDPAFRANTANPDWDFNPNKDTWPDA NKVGAGAFGLGFTPPHGGLLGWSPQAQGIIQTLPTNPPPASTNRQSGRQPTPLSPPLR KTHPQAMQWNSTTFHQTLQDPRVRGLYFPAGGSSSGTVNPVPTTASPISSIFSRIGDP ALNMENITSGFLGPLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQS PTSNHSPTSCPPTCPGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGS STTSVGPCRTCTTTVQGTSMYPSCCCTKPSDGNCTCIPIPSSWAFGKFLWEWASARFS WLSLLVPFVQWFVGLSPTVWLSVIWMMWYWGPSLYSILSPFLPLLPIFFCLWVYI" gene 1374..1838 /gene="X" CDS 1374..1838 /gene="X" /codon_start=1 /product="X protein" /protein_id="AJA30243.1" /translation="MAARLCCQLDPARDVLCLRPVGAESRGRPFSGPLGTLSSPSPSA VSSDHGAHLSLRGLPVCAFSSAGPCALRFTSARRMETTVNAHHFLPKVLHKRTLGLSV MSTTDLEAYFKDCLFKDWEELGEEIRLKVFVLGGCRHKLVCAPAPCNFFTSA" gene 1814..2452 /gene="C" CDS 1814..2452 /gene="C" /note="PreC/Core" /codon_start=1 /product="precore/core protein" /protein_id="AJA30242.1" /translation="MQLFHLCLIISCSCPTVQASKLCLGWLWGMDIDPYKEFGATVEL LSFLPSDFFPSVRDLLDTASALYREALESPEHCSPHHTALRQAILCWGELMTLATWVG VNLEDPASRDLVVSYVNTNMGLKFRQLLWFHISCLTFGRETVIEYLVSFGVWIRTPPA YRPPNAPILSTLPETTVVRRRGRSPRRRTPSPRRRRSQSPRRRRSQSRESQC" BASE COUNT 725 a 857 c 692 g 908 t ORIGIN 1 ctccacaacc ttccaccaaa ctctgcaaga tcccagggtg agaggcctgt atttccctgc 61 tggtggctcc agttcaggaa cagtaaaccc tgttccgact actgcctctc ccatatcgtc 121 aatcttctcg aggattgggg accctgcgct gaacatggag aacatcacat caggattcct 181 aggacccctg ctcgtgttac aggcggggtt tttcttgttg acaagaatcc tcacaatacc 241 gcagagtcta gactcgtggt ggacttctct caattttcta ggggggacca ccgtgtgtct 301 tggccaaaat tcgcagtccc caacctccaa tcactcacca acctcctgtc ctccaacttg 361 tcctggttat cgctggatgt gtctgcggcg ttttatcatc ttcctcttca tcctgctgct 421 atgcctcatc ttcttgttgg ttcttctgga ctatcaaggt atgttgcccg tttgtcctct 481 aattccagga tcttcaacca ccagcgtggg accatgcaga acctgcacga ctactgttca 541 aggaacctct atgtatccct cctgttgctg taccaaacct tcggacggaa attgcacctg 601 tattcccatc ccatcatcct gggctttcgg aaaattccta tgggagtggg cctcagcccg 661 tttctcctgg ctcagtttac tagtgccatt tgttcagtgg ttcgtagggc tttcccccac 721 tgtttggctt tcagttatat ggatgatgtg gtattggggg ccaagtctgt acagcatctt 781 gagtcccttt ttaccgctgt taccaatttt cttttgtctt tgggtataca tttaaaccct 841 aacaaaacta aaagatgggg ttattcttta aatttcatgg gctatgtcat tggatgttat 901 gggtcattgc cacaagatca catcatacag aaaatcaaag aatgttttag aaaacttcct 961 gttaacaggc ctattgattg gaaagtctgt caacgtattg tgggtctttt gggttttgct 1021 gcccctttta cacaatgtgg ttatcctgct ttaatgccct tgtatgcctg tattcaatct 1081 aagcaggctt tcactttctc gccaacttac aaggcctttc tgtgtaaaca atacctgcac 1141 ctttaccccg ttgcccggca acggcaaggt ctgtgccaag tgtttgctga cgcaaccccc 1201 actggttggg gcttggtcat gggccatcag cgcatgcgtg gaacctttct ggctcctctg 1261 ccgatccata ctgcggaact cctagccgct tgttttgctc gcagcaggtc tggagcaaac 1321 attctcggga cggataactc tgttgttctc tcccgcaaat acacatcgtt tccatggctg 1381 ctaggctgtg ctgccaactg gatcctgcgc gggacgtcct ttgtttacgt cccgtcggcg 1441 ctgaatcccg cggacgaccc ttctcggggc cgcttgggac tctctcgtcc ccttctccgt 1501 ctgccgtttc gtccgaccac ggggcgcacc tctctctacg cggactcccc gtctgtgcct 1561 tctcatctgc cggaccgtgt gcacttcgct tcacctctgc acgtcgcatg gagaccaccg 1621 tgaacgccca ccacttcttg cccaaggtct tacataagag gactcttgga ctctctgtaa 1681 tgtcaacgac cgaccttgag gcatacttca aagactgttt gtttaaagac tgggaggagt 1741 tgggggagga gattagatta aaggtctttg tactaggagg ctgtaggcat aaattggtct 1801 gcgcaccagc accatgcaac tttttcacct ctgcctaatc atctcttgtt catgtcctac 1861 tgttcaagcc tccaagctgt gccttgggtg gctttggggc atggacattg acccttataa 1921 agaatttgga gctactgtgg agttactctc gtttttgcct tctgacttct ttccttcagt 1981 acgagatctt cttgataccg cctcagctct gtatcgggaa gccttagagt ctcctgagca 2041 ttgctcacct catcatactg cactcaggca agcaatcctt tgctgggggg agttaatgac 2101 tctagctacc tgggtgggtg ttaatttgga agatccagca tctagggacc tagtagtcag 2161 ttatgtcaac actaatatgg gcctaaagtt caggcaacta ttgtggtttc acatttcttg 2221 tctcactttt ggaagagaaa cggtcataga gtatttggtg tctttcggag tgtggattcg 2281 cactcctcca gcgtatagac cacctaatgc ccctatctta tcaacacttc cggagactac 2341 tgttgttaga cgacgaggca ggtcccctag aagaagaact ccctcgcctc gcagacgaag 2401 gtctcaatcg ccgcgtcgca gaagatctca atctcgggaa tctcaatgtt agtattcctt 2461 ggacacataa ggtgggcaat tttacggggc tttattcttc tactgtacct gtctttaacc 2521 ctcattggaa aacaccttct tttcctgata tacatttaca ccaagacatc atcaaaaaat 2581 gtgaacaatt tgtaggtcca ctcacagtca atgaaaaacg aagactgcaa ttaattatgc 2641 ctgctaggtt ttatccaaat gttaccaaat atttgccatt agataagggt attaaacctt 2701 attatccaga acatctagtt aatcattact tccaaaccag acattattta cacactctat 2761 ggaaggcggg tatattatat aagagagaaa caacacgtag cgcctcattt tatgggtcac 2821 catattcttg ggaacaaaag ctacagcatg gggcagaatc tttccaccag caatcctctg 2881 ggattctttc ccgaccacca gttggatcca gccttcagag caaacaccgc aaatccagat 2941 tgggacttca atcccaacaa ggacacctgg ccagacgcca acaaggtagg agctggagca 3001 ttcgggctgg gattcacccc accgcacgga ggccttttgg ggtggagccc tcaggctcag 3061 ggcataatac aaaccttgcc aacaaatcca cctcctgcat ctaccaatcg ccagtcagga 3121 aggcagccta ccccgctgtc tccacctttg agaaaaactc atcctcaggc catgcagtgg 3181 aa //