LOCUS KL670591 1463372 bp DNA linear CON 08-SEP-2014 DEFINITION Manacus vitellinus isolate BGI_N305 unplaced genomic scaffold scaffold184, whole genome shotgun sequence. ACCESSION KL670591 JMFM02000000 VERSION KL670591.1 DBLINK BioProject: PRJNA212872 BioSample: SAMN02299332 KEYWORDS WGS. SOURCE Manacus vitellinus (golden-collared manakin) ORGANISM Manacus vitellinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Manacus. REFERENCE 1 (bases 1 to 1463372) AUTHORS Zhang,G. and Li,C. TITLE Genome evolution of avian class JOURNAL Unpublished REFERENCE 2 (bases 1 to 1463372) AUTHORS Zhang,G. and Li,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-2014) China National Genebank, BGI, 2nd Office Building, Beishan Industrial Zone,Beishan Road, Yantian District, Shenzhen, Guangdong 518083, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.6 Genome Coverage :: 110x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1463372 /organism="Manacus vitellinus" /mol_type="genomic DNA" /submitter_seqid="scaffold184" /isolate="BGI_N305" /db_xref="taxon:328815" /chromosome="Unknown" /sex="female" /geo_loc_name="Panama" assembly_gap 21126..21851 /estimated_length=726 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 40013..40717 /estimated_length=705 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 59548..62449 /estimated_length=2902 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 64582..65673 /estimated_length=1092 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 146947..149255 /estimated_length=2309 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 150973..150987 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 182019..182429 /estimated_length=411 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<182551..>182889) /locus_tag="N305_03837" mRNA complement(<182551..>182889) /locus_tag="N305_03837" /product="hypothetical protein" CDS complement(<182551..>182889) /locus_tag="N305_03837" /codon_start=1 /product="hypothetical protein" /protein_id="KFW79748.1" /translation="DKNLNSPPVIQKEVVSDLLSCLDPHKSMGPDGILPRVMRELAEE LAKPLSIIYQQSWLTGEVPDDWKSANVMPIHKKGRKEDLGNYRPVSLTSVPGKVREQI ILSAITQQLQD" assembly_gap 218007..218025 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 313791..315407 /estimated_length=1617 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 318410..319385 /estimated_length=976 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 343149..346424 /estimated_length=3276 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 357970..360728 /estimated_length=2759 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <401160..>438332 /locus_tag="N305_03838" mRNA join(<401160..401402,407959..408253,409910..410029, 413077..413244,415114..415301,420005..420258, 424383..424519,427000..427121,429005..429122, 436138..436389,437833..>438332) /locus_tag="N305_03838" /product="Cadherin-20" CDS join(401160..401402,407959..408253,409910..410029, 413077..413244,415114..415301,420005..420258, 424383..424519,427000..427121,429005..429122, 436138..436389,437833..438332) /locus_tag="N305_03838" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_process: GO:0007156 - homophilic cell adhesion [Evidence IEA]" /codon_start=1 /product="Cadherin-20" /protein_id="KFW79749.1" /db_xref="InterPro:IPR000233" /db_xref="InterPro:IPR002126" /db_xref="InterPro:IPR015919" /db_xref="UniProtKB/Swiss-Prot:Q8QGH3" /translation="MWTSGRMSNAKNLFGLGISLYFWGLMDLTTTVLSGSARPLTEGR EDNVSDKLHQRMKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGA GIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQDINDN EPKFLDGPYVASVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSR TGLIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQK HYQMSVLESAPVSSTVGRVVAKDLDEGINAEMKYSLVDGDGLDVFDINTDPNYQVGII TVRKPLSFESKKSYTLKVEGANPHLEMRFLNLGPFRDTTTVHISVEDVDEPPVFEPSM YFVEVPEDVDIGTTIQMISAKDPDVTNNSIRYSIDRSSDPGRFFYVDITSGALMTARP LDREDISWHNITVLAMELNNPSQVGSVSVTVKVLDVNDNAPEFARFYEAFVCENAKAG QLIQTVSAIDRDDPQEGQHFYYSLAPEAANNPNFTLRDNQDNTAWILTRRSGFRQHEQ NTFYLPILISDNGRPVLSSTCTLTVHVCSCDDEGMVMSCNAEAYVLPVSLSRGALIAI LACIFVLLVLVLLILSMRRQRKQPYIIDEEENIHENIVRYDDEGGGEEDTEAFDIAAM WNPREAQLVVKNRQDMLPEIESLSRYVPQACVMDNNVHNYVLAKLYEADMDLWAPPFD SLQTYMFEGSGSVAESLSSLQSVTTDSDQSYDYLTDWGPRFKKLAEMYGATDSSGALW " assembly_gap 412433..412485 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 429994..430007 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 455280..456070 /estimated_length=791 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 457702..457714 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 475284..477919 /estimated_length=2636 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <519879..>520061 /locus_tag="N305_03839" mRNA <519879..>520061 /locus_tag="N305_03839" /product="hypothetical protein" CDS <519879..>520061 /locus_tag="N305_03839" /codon_start=1 /product="hypothetical protein" /protein_id="KFW79750.1" /translation="AATDFLLLVNGHGCQDFEGLCCLNFSDHSQSIHSQINQLKSLVH EISQVDHMTFDDFFNWL" gene complement(<534359..>534970) /locus_tag="N305_03840" mRNA complement(<534359..>534970) /locus_tag="N305_03840" /product="E3 ubiquitin-protein ligase RNF152" CDS complement(534359..534970) /locus_tag="N305_03840" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="E3 ubiquitin-protein ligase RNF152" /protein_id="KFW79751.1" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR018957" /db_xref="UniProtKB/Swiss-Prot:E1C2W7" /translation="METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRT SQKDLRCPWCRGITKLPPGYSVSQLPDDPEVIAVIAIPHTSEHTPVFIKLPSNGCYML PLPLSKERALLPGDIGCRLLPGSQQKSLTVVTIPTEQQPLQSGLSAEVGAEEPDRRGA VKSSTWSGVCTVILVACVLVFLLGIVLHNMSCISKRFTVISCG" assembly_gap 553930..554130 /estimated_length=201 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 565423..565597 /estimated_length=175 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 573811..574706 /estimated_length=896 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<624752..>711372) /locus_tag="N305_03841" mRNA complement(join(<624752..624869,633847..633899, 635602..635644,638494..638567,639779..639854, 640331..640386,643159..643245,645503..645605, 648039..648141,651938..652046,657979..658072, 659789..659880,661278..661370,661489..661588, 662636..662772,667990..668182,668234..668320, 680942..680997,682869..682961,684019..684078, 685949..685989,689707..689823,693612..693742, 694987..695111,701122..701228,705756..705854, 706947..707068,711152..>711372)) /locus_tag="N305_03841" /product="GPI ethanolamine phosphate transferase 1" CDS complement(join(<624752..624869,633847..633899, 635602..635644,638494..638567,639779..639854, 640331..640386,643159..643245,645503..645605, 648039..648141,651938..652046,657979..658072, 659789..659880,661278..661370,661489..661588, 662636..662772,667990..668182,668234..668320, 680942..680997,682869..682961,684019..684078, 685949..685989,689707..689823,693612..693742, 694987..695111,701122..701228,705756..705854, 706947..707068,711152..>711372)) /locus_tag="N305_03841" /note="GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="GPI ethanolamine phosphate transferase 1" /protein_id="KFW79752.1" /db_xref="InterPro:IPR002591" /db_xref="InterPro:IPR017850" /db_xref="InterPro:IPR017852" /db_xref="UniProtKB/Swiss-Prot:O95427" /translation="IPVFILAALLVHCVFLVSIFDIYFSSPLVHGMTPQQTPLPPPAK RLVLFVADGLRADSLYELNSNGTPQAPYLRGILENNGSWGISHTRVPTESRPGHVALI AGFYEDVSAVAKGWKENPVEFDSVFNESKYTWSWGSPDILPMFAKGATGDHVYTFCYA AESEDFGAQDAAKLDIWVFDHVKSFFNSSRSNQTLFSALNEEKVVLFLHLLGIDTNGH AHRPNSREYKENIKKVDEGVKEIASIIDHFYGNDGKTAFILTSDHGMTDWGSHGAGHP SETLTPLIVWGAGINYPQKVTSQFFEDNFLKEWKLENLKRLDVNQADIAPLMASLIGV PFPLNSVGTLPLEYLNNSAHFKAESMFTNAVQILEQFKVKMSQKKENTLSFLFTPFKP LSESEQINFLKKIRLYIQQQKYNEAVSLNKTLSSPMMHVSLTQKKFHFKSQKFCIWIL VLINNTDLLYFFLILLKLLPFHSILTHHIFLFSTKSTVLFYGFAFAGMIIAFFLLIQT CPWTYYVYCLLPVPVWYAVVREIPVIQDLTTNVLSLRIGQSIGFLLVCILGIEILVFS FFYRSALTVGLLVFAGWPVITQLWVQAKTRALIWTLLCVLLAIFPLMPVVGREPNIPL VIAAGLLTLLISCFSLANKYRNNEDLKVYFYQMLSIALSTYVVSSTHDSLKKKLGLPV LNQIISWMILVSSPVLLLLSPTFLFQRLFSILLSLMSTYLLLSTGYEALFPLVLFGLM FVWINMEQEALQRYGLSLKPKLAVFNFAYAVDITQFRELHLDDVRRSFFFVFFIVTAF FGTGNIASINSFDPASVYCFLTVFSPFMMGSLLVLKVVIPFVLVSCAFEAVQVTTQLS SKSLFLIVLVISDIMALHFFFLVKDYGSWLDIGTSISHYVLVMSLTIFMMLMNGLAQL LTTQRLELPRRTKHHS" assembly_gap 662919..666862 /estimated_length=3944 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 726609..727845 /estimated_length=1237 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 738023..738032 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <744672..>800671 /locus_tag="N305_03842" mRNA join(<744672..744762,752622..752693,752802..752857, 752951..753064,754048..754251,754336..754427, 754887..755192,759279..759354,759753..759848, 767808..767920,772453..772543,775071..775142, 775935..776075,776550..776714,777503..777650, 778799..778955,779507..779630,780682..780730, 781136..781215,781975..782081,782624..782723, 786574..786656,787591..787654,789201..789339, 789691..789807,790821..790909,796495..796565, 800554..>800671) /locus_tag="N305_03842" /product="LisH domain and HEAT repeat-containing protein KIAA1468" CDS join(<744672..744762,752622..752693,752802..752857, 752951..753064,754048..754251,754336..754427, 754887..755192,759279..759354,759753..759848, 767808..767920,772453..772543,775071..775142, 775935..776075,776550..776714,777503..777650, 778799..778955,779507..779630,780682..780730, 781136..781215,781975..782081,782624..782723, 786574..786656,787591..787654,789201..789339, 789691..789807,790821..790909,796495..796565, 800554..>800671) /locus_tag="N305_03842" /note="GO_function: GO:0005488 - binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="LisH domain and HEAT repeat-containing protein KIAA1468" /protein_id="KFW79753.1" /db_xref="InterPro:IPR006594" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR021133" /db_xref="UniProtKB/Swiss-Prot:Q9P260" /translation="DRAGSISTLDSLDFARYSDDGNRETDERVAVLEFELRKAKETIQ ALRANLTQAAENEVPLQERKNYKSSPEIQEPIRPLEKRALNFLVNEFLLKNSYKLTSI TFSDENHDQDFELWDDVGLNIPKPPDLLQLYRDFGNHHVTAKDVVDASVGVEDDELEA DTPILGTVPVFETTPQSIEQCLIVQKLEDQISVLNSEKWSLMEQIQRLESEIDLLKNE NFAVSTVYGVAPHPLKQVPLTVSEDNGRYLDIKSSENDNKHGNTEETSLALSAEVDSR TSKDDMLNSVSCKETEKLSSRAPSSKTAVHFDKPNRKLSPAFHQALLSFCRMSADSRL GSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLL HILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVA ESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYQQ GFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQFHLIPTLLNKIEKLLREGE HGLDEHKLHMYLSALQSLIPSLFALVLQNAPFTSKAKLQGEVPQIEVTRFPRPISPLQ DVAIIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGKINVASTA CVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSTAGNGVLTKATVPIYA TGVLTCYIQEEDRKLLVGFLEDVMTMLSLSHAPLDSLKASFVELGANPAYHELLLTVL WYGVVHTSALVRCTAARMFELLVKGVHETLVAQRVVPALITLSSDPEISVRIATIPAF GTIMETVTQRELLERVKMQLASFLEDPQYQDQHSLHTEIIKTFGRVGPNAEPRFRDEF VIPHLHKLALVNNQQSVDSKRLDIATHLFESYSALSCCFISEDLMVNHFLPGLKCLRT DMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQL TTSGAMLANVFQRKK" assembly_gap 793415..793771 /estimated_length=357 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <822669..>835566 /locus_tag="N305_03843" mRNA join(<822669..822762,823213..823338,823884..824027, 825143..825236,825594..825688,835211..>835566) /locus_tag="N305_03843" /product="Tumor necrosis factor receptor superfamily member 11A" CDS join(<822669..822762,823213..823338,823884..824027, 825143..825236,825594..825688,835211..>835566) /locus_tag="N305_03843" /note="GO_function: GO:0005488 - binding [Evidence IEA]" /codon_start=1 /product="Tumor necrosis factor receptor superfamily member 11A" /protein_id="KFW79754.1" /db_xref="InterPro:IPR001368" /db_xref="UniProtKB/Swiss-Prot:O35305" /translation="SLLQLSLQITPPCESEQHYEYSGRCCTKCEPGKYLSARCTGTSD SVCQPCGPNEYMDVWNEEDKCLLHKICDQGKALREVNPGNSTFQRQCACTVGYHWDED CDCCQRNTMCAPGLGVKPPVQQDKDTLCIPCPRGYFSKVSSSTDECKPWTNCTALGMT EIMSGTDKTDAVCTERRMSEPSEDGNVTGNSNSTFISSGQVMNFKGDIIVVYLSQNSQ EGTTASGLNEENVGSPVQEENLSRCETFAGNAQHYKEKCAELQGACPAPGSGGPRWPG VALAQERGPSCCGQASQPVQEEGKLGH" assembly_gap 828552..828639 /estimated_length=88 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 849443..849496 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 874287..875256 /estimated_length=970 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 877485..877647 /estimated_length=163 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <888122..>914729 /locus_tag="N305_03844" mRNA join(<888122..888233,891552..891628,893856..893927, 897140..897252,899257..899351,901872..901955, 903838..903895,906440..906575,907752..907816, 908662..908756,911328..911456,912160..913668, 914665..>914729) /locus_tag="N305_03844" /product="Zinc finger CCHC domain-containing protein 2" CDS join(<888122..888233,891552..891628,893856..893927, 897140..897252,899257..899351,901872..901955, 903838..903895,906440..906575,907752..907816, 908662..908756,911328..911456,912160..913668, 914665..>914729) /locus_tag="N305_03844" /note="GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_process: GO:0007154 - cell communication [Evidence IEA]" /codon_start=1 /product="Zinc finger CCHC domain-containing protein 2" /protein_id="KFW79755.1" /db_xref="InterPro:IPR001683" /db_xref="InterPro:IPR001878" /db_xref="UniProtKB/Swiss-Prot:Q9C0B9" /translation="NDFSHSDCMSSNETSLLERTTAPHDGLPMASHRPQREAVHIEKI TLKGVPRKRADKHLEYTFKVTWSDLSVTCVTKTHQELQEFLLKLPKELSSEAFDKTIL RALNQGFQKREERRHADLEPIIRQLFSNTSQAFLQNQRVYNFFQSISSESLHTHSNLQ PSLKTVKTPEHFKEDSSEASSQEEDVMQHTSVHKKHNGKGPVANTSSAKCSSLDSLNI QHSEQNGVMDWRRKSCIVQQHPEHCTNLLDQHTVEKRSLSAVSKKKGKPQLEKEKAKK TECRLNNRSNGVRVAASQHIRTGTAKDLNLDAGSGHDTCGETSSESYSSPSSPRHDGR ESFDSEEEKDRDTDSNSEDSGNQNTTRFTGYSAVSSSNMNKSSAQISSVSNENGSLSE DPLNAKFQHISFMPALHCVMHSAAQKPEAVVPPPISADGKTMGMLVTTPVAVSPVRES ANSPPGGMGPVASGEPEKRLELMASPLPVPSTFLPHSVQPGSPALHLAIHRLKMPSPQ GSSESCTVNGPQQPTGNLSIGSPNTAFIPVHNPGSFPGSPVPTTDPITKPASQVVGLN QMVPHIEGNPGAIPQPTNLKVVLPAAGLSTAAPPPPPASYALPGSPHATSVLPNQNTN VLNTGAASSPPQSAGLGVGQVQSTVPPAIPTHTPGPAPSPSPALTHSTAQSDSTSYIN AVGNNNTNGTMLPPQQLGSGPCGSCGRRCSCGTNGSLQINSYFYHNPLHGQVYRVPSF FPLPSLCNGSYLNQAHQSNGTQLPFFLPQSPYANGLMHDPVMGSQANYGMQQMAGFSR FYPVYPAPNVVANTNGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEASQQGTYRLRYA PPPPPSNDTLDSAD" assembly_gap 953937..955918 /estimated_length=1982 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1027203..>1087058 /locus_tag="N305_03845" mRNA join(<1027203..1027403,1029394..1029519,1041653..1041819, 1052726..1052876,1053418..1053641,1054879..1055081, 1056715..1056775,1058621..1058716,1062554..1062709, 1071006..1071206,1072177..1072339,1077061..1077191, 1080764..1080868,1081679..1081873,1083907..1084135, 1086066..>1087058) /locus_tag="N305_03845" /product="PH domain leucine-rich repeat-containing protein phosphatase 1" CDS join(<1027203..1027403,1029394..1029519,1041653..1041819, 1052726..1052876,1053418..1053641,1054879..1055081, 1056715..1056775,1058621..1058716,1062554..1062709, 1071006..1071206,1072177..1072339,1077061..1077191, 1080764..1080868,1081679..1081873,1083907..1084135, 1086066..>1087058) /locus_tag="N305_03845" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0005543 - phospholipid binding [Evidence IEA]" /codon_start=1 /product="PH domain leucine-rich repeat-containing protein phosphatase 1" /protein_id="KFW79756.1" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR001932" /db_xref="InterPro:IPR003591" /db_xref="UniProtKB/Swiss-Prot:O60346" /translation="SGKPHSIGSSERIQLSGMYNVRKGKIHLPVNRWTRRQAILCGTC LIVSSVKESQTGKMHVLPLIGGKVEEVKKHQHCLAFSSSGPQSQTYYICFDNFTEYLR WLRQASKVASQRISSVDLSCCSLEHLPANLFYSQDLTHLNLKQNFLRLNPSPSTSRAL SELQRFTKLKSLNLSNNNLGDFPLAVCSIPTLTELNVSCNALRSIPAVVGEMHKQTFL LDGNFLQSLPDELEHMHQLSYVSLSFNEFTDIPGVLEKLTAMDKLCMSGNCMDTLNLQ VLKRMPHIKHVDLRLNSIRRLEADEVDFLHHVTQLDLRDNRLGELDATVFNNVEVLHC ERNQLVTLKISGYFLKALYASSNELVHLDVYPVPNCLAYMDISRNHLENLPEWVCDSR KLEVLDVGHNQIRELPARLFYNSSLRKLLAGHNMLGRLPDRLERTQVEVLDVQHNQLL ELPSNLLLKADSLRFLNASANKLEMLPPATLSEETHSILQELYLTNNNLTDKCVPLLT GHPHLKILHMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTIMNCRRMHTVIAH SNCIEVFPEVMQLSEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLALDHKTLE LLNNIRCFKIDQPSAGDASGAPAVWSHGYTEASGVKNKLCVAALSANNFCDNREALYG VFDGDRNVEVPYLLQCTMSDILAEELQKTKNEEEYMINTFIVMQRKLGTAGQKLGGSA VLCHIKHDPMDPGGCFTLTSANVGKCQTVLCRNGKPLPLSRCYVMSCEEELKRIKQHK AIITEDGKVNGVTDSTRILGYTFLHPSVVPRPHVQSITLTPQDEFFILGSKGLWDSLS MEEAVEAVRNVPDALAAAKKLCTLAQSYGCNDSISAVVVQLNVTEDSFCCCELNGVPP PSPGIFPQSVNVVIKDRPTDALGMPSSSSGMASEISSEISTSEMSSEVGSTASDEPPQ VAMNENSPAYPGEQRCMLHPVSLIHCSRAKEKQLLQVPVEASDEGIVISANEDEPGLP RKAEYSATGTIGRRRGNGSVAPHERSHNLIEVATDAPLRKTGGYFAAPAQPDPDDQFI IPPELEEEVKEIMKQHQEQQQQQQQQQQQQRQYPMDHLADYYDTPL" assembly_gap 1067325..1067411 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1079443..1079489 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1083296..1083315 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1093481..1093496 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1099962..>1113859) /locus_tag="N305_03846" mRNA complement(join(<1099962..1100458,1113688..>1113859)) /locus_tag="N305_03846" /product="MARVEL domain-containing protein 3" CDS complement(join(<1099962..1100458,1113688..>1113859)) /locus_tag="N305_03846" /note="GO_component: GO:0016020 - membrane [Evidence IEA]" /codon_start=1 /product="MARVEL domain-containing protein 3" /protein_id="KFW79757.1" /db_xref="InterPro:IPR008253" /db_xref="UniProtKB/Swiss-Prot:Q96A59" /translation="RSTEDIRGGQHSRTSTVCSDRYSKTSGAAREYFGPQPEFYPPKE TFSMKCSKVCTTRGILKFVEITVNLLVLICVGASQASIAGFTSLGGFGSFSLNSAYSP FEGTELQEVRELDMQITQMRAPCVYGGVAFSLTAAVLTLVFLVVGAKPIQQLRTGLLV GECAFNLLAGAAYVVAVGLYLHFVSQVNSTEVCKRRERLYARRGYTSMNCVVQGGDAA VGLFG" assembly_gap 1118201..1118506 /estimated_length=306 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1133493..1133766 /estimated_length=274 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1143395..>1235002) /locus_tag="N305_03847" mRNA complement(join(<1143395..1143529,1234492..1234658, 1234777..>1235002)) /locus_tag="N305_03847" /product="Apoptosis regulator Bcl-2" CDS complement(join(1143395..1143529,1234492..1234658, 1234777..1235002)) /locus_tag="N305_03847" /note="GO_process: GO:0042981 - regulation of apoptotic process [Evidence IEA]" /codon_start=1 /product="Apoptosis regulator Bcl-2" /protein_id="KFW79758.1" /db_xref="InterPro:IPR000712" /db_xref="InterPro:IPR002475" /db_xref="InterPro:IPR003093" /db_xref="InterPro:IPR013278" /db_xref="UniProtKB/Swiss-Prot:Q00709" /translation="MAHPGRRGYDNREIVLKYIHYKLSQRGYDWAAGEDPAPLPPGLS PPAAAAVAAAAGTSSDHTGLVSPHPEPPGSADGVNWGRIVAFFEFGGVMCVESVNREM SPLVDSIAAWMTEYLNRHLHNWIQDNGGWDAFVELYGNSMRPLFDFSWISLKTILSLV LVGACITLGAYLGHK" assembly_gap 1156100..1156374 /estimated_length=275 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 1185800..1186519 /locus_tag="N305_03848" /pseudo assembly_gap 1200421..1200528 /estimated_length=108 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1234666..1234776 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1236241..1237087 /estimated_length=847 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1245851..1245878 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1246777..>1261685) /locus_tag="N305_03849" mRNA complement(join(<1246777..1246893,1247286..1247387, 1249236..1249319,1252166..1252249,1254009..1254200, 1255268..1255363,1255512..1255577,1260417..1260473, 1261596..>1261685)) /locus_tag="N305_03849" /product="3-ketodihydrosphingosine reductase" CDS complement(join(<1246777..1246893,1247286..1247387, 1249236..1249319,1252166..1252249,1254009..1254200, 1255268..1255363,1255512..1255577,1260417..1260473, 1261596..>1261685)) /locus_tag="N305_03849" /note="GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="3-ketodihydrosphingosine reductase" /protein_id="KFW79759.1" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="UniProtKB/Swiss-Prot:Q06136" /translation="VTGGSSGIGKCIAIECYKQGAFITLIARDENKLLQTKKEIEKYS VNDKQVVLCISVDVSKDYEQVENVLKQAQEKLGPVDMLVNCAGTSVTGKFEDIEVNSF ERLMAVNYLGSVYPSRAVIATMKERRMGRIVFVSSQAGQLGLFGYTAYSPTKFALRGL AEALQMEVKPYNVYVTVAYPPDTDTPGFAEESKTKPLETKLISETSSVCQAEQVARVI VKDAIQGNFNSSVGSDGYMLSILTSGMSPVTSITEGLQQVVCMGIFRIIGLFYLGSFD SIVRRCMMQREKSESADKTE" assembly_gap 1258820..1258882 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1261282..1261306 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1268889..1269616 /estimated_length=728 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1283481..>1290385) /locus_tag="N305_03850" mRNA complement(join(<1283481..1283579,1285400..1285537, 1288077..1288296,1290303..>1290385)) /locus_tag="N305_03850" /product="Vacuolar protein sorting-associated protein 4B" CDS complement(join(<1283481..1283579,1285400..1285537, 1288077..1288296,1290303..>1290385)) /locus_tag="N305_03850" /codon_start=1 /product="Vacuolar protein sorting-associated protein 4B" /protein_id="KFW79760.1" /db_xref="InterPro:IPR015415" /db_xref="UniProtKB/Swiss-Prot:Q0VD48" /translation="GVGVDNEGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEDQARA AMFKLHLGSTPNLLTESDYRELGKKTEGYSGADISIIVRDALMQPVRKVQSATHFKKV KGPSVSTPNTMVDLFTPCSPGDPEAIEMTWMEVPGDKLLEPQVSMADMLRSLASTKPT VNELDLEKLKKFTEDFGQEG" gene complement(<1290537..>1292833) /locus_tag="N305_03851" mRNA complement(join(<1290537..1290687,1292301..1292457, 1292695..>1292833)) /locus_tag="N305_03851" /product="Vacuolar protein sorting-associated protein 4B" CDS complement(join(<1290537..1290687,1292301..1292457, 1292695..>1292833)) /locus_tag="N305_03851" /note="GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]" /codon_start=1 /product="Vacuolar protein sorting-associated protein 4B" /protein_id="KFW79761.1" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="UniProtKB/Swiss-Prot:O75351" /translation="IQSFLIGAIVMERPNVKWSDVAGLEGAKEALKEAVILPIKFPHL FTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVK NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG" assembly_gap 1301236..1301594 /estimated_length=359 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1308183..1308270 /estimated_length=88 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1310628..1311490 /estimated_length=863 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1317915..>1326327 /locus_tag="N305_03852" mRNA join(<1317915..1318082,1320786..1320923,1321962..1322079, 1323289..1323431,1324846..1325013,1325935..>1326327) /locus_tag="N305_03852" /product="Serpin B5" CDS join(1317915..1318082,1320786..1320923,1321962..1322079, 1323289..1323431,1324846..1325013,1325935..1326327) /locus_tag="N305_03852" /note="GO_function: GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]" /codon_start=1 /product="Serpin B5" /protein_id="KFW79762.1" /db_xref="InterPro:IPR000240" /db_xref="InterPro:IPR023796" /db_xref="UniProtKB/Swiss-Prot:P70124" /translation="MDALQLANTAFAVDMFKKLCEKDKTANIIFSPLCTSTSLALAYK ATKGDTADQMKQVLHLKDVKDVSFGFQTITSDVSKLSSFFALKMVKRLFVDKSLNPTT DFVNSTKRPFPSELELVEFKEKTEETRQKINKSLSELTDGKMENILNEDSVSGETQIL LVNAAYFVTNWMKKFPEAEIKECAFKVNKTETKPVQMMNLEATFCLGYVKDLNVSILE LPCLNKHISMLILLPKEIEDETTGLEQLEKALTPETLLQWTNPSMMANTKVNVFLPKF SIEGDYDLKPLLESLGMTNIFNESASDFSEMCETKGVVLSKIIHKVSLEVNEQGGDSR EVPGYRILQHKDEFKADHPFIFLFRHNKTRNVILTGRFCSP" gene <1336112..>1341672 /locus_tag="N305_03853" mRNA join(<1336112..1336324,1338306..1338437,1339296..1339413, 1340633..1340775,1340975..1341145,1341268..>1341672) /locus_tag="N305_03853" /product="Serpin B11" CDS join(1336112..1336324,1338306..1338437,1339296..1339413, 1340633..1340775,1340975..1341145,1341268..1341672) /locus_tag="N305_03853" /codon_start=1 /product="Serpin B11" /protein_id="KFW79763.1" /db_xref="InterPro:IPR023796" /db_xref="UniProtKB/Swiss-Prot:Q96P15" /translation="MNSISRPVTEFCLDLYNKLNRNAEDTNIVFSPASISVALALIHL GARNNTAAQIEKVSINKPCRDASSFLACNKDGDLNHKVFQTLLLQLQNLGERYVLTLA NNLFIQQGFEIQQQFLMCTKELYGAMLQTVDFHGAVEAARRKINAWVESETQGKIREL FAPGVIDGHALLVLVNVIYFKAPWEHKFEEQKTVQRDFKLNQNRKKPVQMMYQKGTFK LGYIEEVGAQILELPYAQKSLSMIILLPGDVADGSISGMEQIESKMTYENLMLWTSVE NMFETTVEVYLPRFKLEDTFNLNEVLQEMGMTDIFTESKVDLSAMSFAKSLVLSNVVH KTYVEVNEEGTVAAAGTGASIVRRSMPLTEVFMANRPFLFFIRHNPTNTIIFFGKLCS P" assembly_gap 1358557..1358583 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1362623..>1364202 /locus_tag="N305_03854" mRNA join(<1362623..1362763,1363484..1363651,1363801..>1364202) /locus_tag="N305_03854" /product="Serpin B10" CDS join(<1362623..1362763,1363484..1363651,1363801..>1364202) /locus_tag="N305_03854" /codon_start=1 /product="Serpin B10" /protein_id="KFW79764.1" /db_xref="InterPro:IPR023796" /db_xref="UniProtKB/Swiss-Prot:B2KI30" /translation="KIKDLFSTGFIDPSTVLVLVNAMYFKGKWAAEFKKEDTKEAYFH LNKNESRTVQMMFQEGYFNMAILEEPKMKVIELLYFNNELSMFILLPEDDCEDFTGLE QLECALTYEKLAEWTSSARMEPLKVKVYLPQFKMEESYVLNKTLQEMGVMNVFDWGKA DLSGISKKGGLVVSKAIQKTIVEVNEEGTEAACATGLLAMPLCCPLTYEFKADHPFLF FIRHNQTNTILFFGRYCSP" assembly_gap 1369198..1369499 /estimated_length=302 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1373361..>1375891 /locus_tag="N305_03855" mRNA join(<1373361..1373501,1373807..1373962,1375493..>1375891) /locus_tag="N305_03855" /product="hypothetical protein" CDS join(<1373361..1373501,1373807..1373962,1375493..>1375891) /locus_tag="N305_03855" /note="GO_function: GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="KFW79765.1" /db_xref="InterPro:IPR000240" /db_xref="InterPro:IPR023796" /translation="RIQDLLEPGSVDLHTVLVLVNAIYFKGIWKSAFKEEDTREVPFS VTKQESRPVQMMFQNSTFNIGRVAAEKMKILELPYTSGELSLLVLLPDDISGLEQLEN KISFDKLTEWTSPSVMEQKRVKVYLPRMKIEEKYNLTSVLTALGMTDLFSPSANLSGI SSAESLKISEAIHEAYMEVTEEGTEVTGSAVVKGDIQESSESEEFRADHPFLFLIRHN PSNMILFFGRYCSP" gene <1389108..>1390911 /locus_tag="N305_03856" mRNA join(<1389108..1389248,1389595..1389750,1390513..>1390911) /locus_tag="N305_03856" /product="hypothetical protein" CDS join(<1389108..1389248,1389595..1389750,1390513..>1390911) /locus_tag="N305_03856" /codon_start=1 /product="hypothetical protein" /protein_id="KFW79766.1" /db_xref="InterPro:IPR023796" /translation="RIQDLIVPDSVGLDTALVFVNAIYFKGIWKTAFREDDTREVPFN VTEQESRPVQMMFQNSTFKVGRVAAEKMKILELPYASGELSLLVLLPDDISGLEQLEN KISYERLMKWTSPSVMEQKRVKVYLPRMKIEEKYNLTSVLTALGMTDLFSPSANLSGI SSAESLKISEAIHEAYMEVTEEGTEVTGSAVVKGDIQESSESEEFRADHPFLFLIKHN PSDLILFFGRYCSP" assembly_gap 1405776..1410109 /estimated_length=4334 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1421397..>1427672 /locus_tag="N305_03857" mRNA join(<1421397..1421568,1424633..1424748,1425125..1425242, 1425607..1425749,1426296..1426451,1427268..>1427672) /locus_tag="N305_03857" /product="Serpin B10" CDS join(1421397..1421568,1424633..1424748,1425125..1425242, 1425607..1425749,1426296..1426451,1427268..1427672) /locus_tag="N305_03857" /note="GO_function: GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]" /codon_start=1 /product="Serpin B10" /protein_id="KFW79767.1" /db_xref="InterPro:IPR000240" /db_xref="InterPro:IPR023796" /db_xref="UniProtKB/Swiss-Prot:B4USX2" /translation="MDALNKANTSFALDFFKQQCQEDGDENILFSPLSISSALAMVYL GARGNTADQMAKVNNIHTGFKALNFEINQPTENYLLKSVNQLYGEKSLPFSKEYLHLA KKYYNAEPQSVDFVGAADEIRREINSNVEQQTEGKIQNLLPPGSIDSLSRLVLINALY FKGNWATKFEAEATRQRPFRINTHTTKPVPMMHLSDKFNLSYVESVQADVLELPYVNN DLSMFILLPSDLTGLQKLERELTFENLSSWTNPELMEKMKMEVYLPRFTLEEKYDLKS TLSRMGIQDAFTEGQADFTGMSKDGDLFLSQVFHKCYLEVNEEGTEAAAASSAALASR SLGAAVIFVADHPFLFFIRHNKTKTILFLGRFSSP" gene <1431964..>1437869 /locus_tag="N305_03858" mRNA join(<1431964..1432131,1433055..1433141,1433487..1433624, 1434145..1434262,1434962..1435104,1436215..1436382, 1437456..>1437869) /locus_tag="N305_03858" /product="Heterochromatin-associated protein MENT" CDS join(1431964..1432131,1433055..1433141,1433487..1433624, 1434145..1434262,1434962..1435104,1436215..1436382, 1437456..1437869) /locus_tag="N305_03858" /codon_start=1 /product="Heterochromatin-associated protein MENT" /protein_id="KFW79768.1" /db_xref="InterPro:IPR023796" /db_xref="UniProtKB/Swiss-Prot:O73790" /translation="MEVVSTSVGKFTVDLFNKLNETNKGKNIFFSPWSISAALALTYL GAKGNTATEMAEVLHFTQPAGDEASSSVARPSRGRPKRRKMDPENKQAADVHSGFKKL LTAINKPRSTYSLRSANRIYMEKSFLLLPTYIQLSKNYYKAEPQKVNFKTAPEQSGKE INAWVEKQTEGKIKNLLTPRDVSNATELVLVNAIYFKAEWEVKFQEGDTDLQAFRLSK NKTKPVKMMYMRNKFPVLIMERMNFKMIELPYVKHELSMFILLPDDIKDNTTGLEQLE RELTYEKLSEWTDSKKMTETLVDLYLPKFKMEERYDLSDNLVRMGMPSAFSRNADFSG MTEKGVLQISKVFHKSFVAVDEKGTEAAAATAVIIKLTSAPVGHVLKFKVDHPFFFFI RHNKSKSILFFGRFCSPLE" gene 1445316..1456417 /locus_tag="N305_03859" /note="Heterochromatin-associated protein MENT; contains frameshift" assembly_gap 1457285..1457575 /estimated_length=291 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1460042..>1461249 /locus_tag="N305_03860" mRNA join(<1460042..1460209,1461115..>1461249) /locus_tag="N305_03860" /product="Serpin B6" CDS join(1460042..1460209,1461115..>1461249) /locus_tag="N305_03860" /codon_start=1 /product="Serpin B6" /protein_id="KFW79769.1" /db_xref="InterPro:IPR023796" /db_xref="UniProtKB/Swiss-Prot:O02739" /translation="MASLCAANTTFALDLLRKLCEKKSGQNLFFSPFSISSALSMILL GSKGNTEAQITKVLSLNKAEDAHNGYQSLLSEINDPNTKYILRTANRLYGEKTFEFL" assembly_gap 1461763..1462591 /estimated_length=829 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(JMFM02020464.1:1..21125,gap(726),JMFM02020465.1:1..18161, gap(705),JMFM02020466.1:1..18830,gap(2902),JMFM02020467.1:1..2132, gap(1092),JMFM02020468.1:1..81273,gap(2309),JMFM02020469.1:1..1717, gap(15),JMFM02020470.1:1..31031,gap(411),JMFM02020471.1:1..35577, gap(19),JMFM02020472.1:1..95765,gap(1617),JMFM02020473.1:1..3002, gap(976),JMFM02020474.1:1..23763,gap(3276),JMFM02020475.1:1..11545, gap(2759),JMFM02020476.1:1..51704,gap(53),JMFM02020477.1:1..17508, gap(14),JMFM02020478.1:1..25272,gap(791),JMFM02020479.1:1..1631, gap(13),JMFM02020480.1:1..17569,gap(2636),JMFM02020481.1:1..76010, gap(201),JMFM02020482.1:1..11292,gap(175),JMFM02020483.1:1..8213, gap(896),JMFM02020484.1:1..88212,gap(3944),JMFM02020485.1:1..59746, gap(1237),JMFM02020486.1:1..10177,gap(10),JMFM02020487.1:1..55382, gap(357),JMFM02020488.1:1..34780,gap(88),JMFM02020489.1:1..20803, gap(54),JMFM02020490.1:1..24790,gap(970),JMFM02020491.1:1..2228, gap(163),JMFM02020492.1:1..76289,gap(1982), JMFM02020493.1:1..111406,gap(87),JMFM02020494.1:1..12031,gap(47), JMFM02020495.1:1..3806,gap(20),JMFM02020496.1:1..10165,gap(16), JMFM02020497.1:1..24704,gap(306),JMFM02020498.1:1..14986,gap(274), JMFM02020499.1:1..22333,gap(275),JMFM02020500.1:1..44046,gap(108), JMFM02020501.1:1..34137,gap(111),JMFM02020502.1:1..1464,gap(847), JMFM02020503.1:1..8763,gap(28),JMFM02020504.1:1..12941,gap(63), JMFM02020505.1:1..2399,gap(25),JMFM02020506.1:1..7582,gap(728), JMFM02020507.1:1..31619,gap(359),JMFM02020508.1:1..6588,gap(88), JMFM02020509.1:1..2357,gap(863),JMFM02020510.1:1..47066,gap(27), JMFM02020511.1:1..10614,gap(302),JMFM02020512.1:1..36276,gap(4334), JMFM02020513.1:1..47175,gap(291),JMFM02020514.1:1..4187,gap(829), JMFM02020515.1:1..781) //