LOCUS KL447636 6494776 bp DNA linear CON 04-SEP-2014 DEFINITION Cuculus canorus isolate BGI_N303 unplaced genomic scaffold scaffold33, whole genome shotgun sequence. ACCESSION KL447636 JNOX01000000 VERSION KL447636.1 DBLINK BioProject: PRJNA212870 BioSample: SAMN02298149 KEYWORDS WGS. SOURCE Cuculus canorus (common cuckoo) ORGANISM Cuculus canorus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Cuculiformes; Cuculidae; Cuculus. REFERENCE 1 (bases 1 to 6494776) AUTHORS Zhang,G. and Li,C. TITLE Genome evolution of avian class JOURNAL Unpublished REFERENCE 2 (bases 1 to 6494776) AUTHORS Zhang,G. and Li,C. TITLE Direct Submission JOURNAL Submitted (29-APR-2014) China National Genebank, BGI, 2nd Office Building, Beishan Industrial Zone, Beishan Road, Yantian District, Shenzhen, Guangdong 518083, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.6 Genome Coverage :: 100x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6494776 /organism="Cuculus canorus" /mol_type="genomic DNA" /submitter_seqid="scaffold33" /isolate="BGI_N303" /db_xref="taxon:55661" /chromosome="Unknown" /sex="male" /geo_loc_name="Denmark" assembly_gap 11365..11425 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 22374..22424 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 61761..62524 /estimated_length=764 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 75198..75227 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 80282..80687 /estimated_length=406 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 81086..81258 /estimated_length=173 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 92397..92410 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 159447..159503 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 175998..176086 /estimated_length=89 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 187061..187903 /estimated_length=843 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <188901..>212609 /locus_tag="N303_07773" mRNA join(<188901..189043,189628..189743,191252..191430, 194297..194448,194864..195023,195248..195448, 196639..196815,197638..197717,197820..197966, 198231..198364,201404..201537,202962..203141, 204132..204364,204802..204954,206071..206211, 207134..207215,208856..208996,209991..210185, 210605..210755,211653..211769,212470..>212609) /locus_tag="N303_07773" /product="TBC1 domain family member 31" CDS join(<188901..189043,189628..189743,191252..191430, 194297..194448,194864..195023,195248..195448, 196639..196815,197638..197717,197820..197966, 198231..198364,201404..201537,202962..203141, 204132..204364,204802..204954,206071..206211, 207134..207215,208856..208996,209991..210185, 210605..210755,211653..211769,212470..>212609) /locus_tag="N303_07773" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]" /codon_start=1 /product="TBC1 domain family member 31" /protein_id="KFO75484.1" /db_xref="InterPro:IPR000195" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR017986" /db_xref="UniProtKB/Swiss-Prot:Q96DN5" /translation="VVNIFHSVKGYHSKTIRFLNVAFDSSGDSILAGDHQGNIYVFDL NGNRFNLVQRTMQACTALAFNLRRKTEFLVALADYSIKCFDTETKELVSWMRGHDSSV SSISVHGSGRYAITTSTDTAQLWDLDSFQRKRKLNVRQSVGIQNVFFLPLSNTILSCF KDNSVFAWEFDTLRCKYQLPTPVEGSVFLYKVFAVTRDGRIFVAGGKSNHLHLWCLES KQLMRIIQMPAKVRAVRHLEFLPDSFDGGSNQVLGVLSQDNIMRFINIETCKLLFDIG SHEEGIITAAISPNGRYIASVMENGNLNLYSVQALTQDVNKPPSPTFKVVEDWSKCTS QENKLTMRVTSGRSEQPWKPKRSKIQSRLLKLNVNTSPENKENELPGGLNKKRLRALL KGFGEYPEKYRMFVWRSLLQLPENHLAFSSLIDKGTHSAFVNIQDEYPIKSRKLLRVL QRTLSALAHWSAIFAEMPYIPLLAFPFVKLFQNNQLICFEVVATVVVNFCQHWFEYFP NPPVNVLSMMENVLAHHDKELLQHLIKYNVTSQVYAWPLLETLFSEVLTREEWLKVFD NIFSNHPSYFLMMVVAYIICSRVPLLRCNQRADFEYFFHHRNNLDINIVIKEAYQLME ATPLDIHPKRMFDDFIPLTKGQYPVFNKYPKFIVDYQTRERERIRQDEIEYLQERQLM HELEAKAHEQKAEDEAWYRKQELLQEAEEQKRKMLLEEEEKLVEQRQRLAAVKRELKA KELQFLDASRRRFLKYQQDQRQMELKHLDDEILRKAEEQETAAAVQDVEVRRMELESQ RQLFEQRLIKDQEAVTKEMKEEVDAHQRRVDLEDHVIQRLMEVDREEQQKAQIVAEEK LAKAEQKRVEANWRLQMLHKLRRDDEDREKRYEEIAKLLHDNRVKEAELLKAMREAEE KKREEVTQKRAQLEKEQKAAAAANEHRKRFLEDRMNDTLELAGNLQREDGCFERLRDL KARCTERGVELQQVPRSGNICLNDLSASESSLHMSLGQRRGELACEERELMAEVRRLR QKLVSQARSRHPPTHFPATGWT" assembly_gap 193224..193242 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 216827..227521 /locus_tag="N303_07774" /note="Protein FAM83A; contains frameshift" gene complement(<236044..>241367) /locus_tag="N303_07775" mRNA complement(join(<236044..236247,237480..237612, 239914..240431,241224..>241367)) /locus_tag="N303_07775" /product="Uncharacterized protein C8orf76" CDS complement(join(<236044..236247,237480..237612, 239914..240431,241224..>241367)) /locus_tag="N303_07775" /codon_start=1 /product="Uncharacterized protein C8orf76" /protein_id="KFO75485.1" /db_xref="UniProtKB/Swiss-Prot:Q96K31" /translation="KALCEYSECLLLLPPSNVAMRRDVQEGQARCLSCLGRHKEALDI AEKMSNSATNTDHLTTVLNLQFAIYQGLENVEKKIMCLQQLICLHPFHPWYWKSLAEA YMSLLRSLSPLVVPEADLNQSEEVGVGNSSFKTSAGRDINLQPHRSDGQKESSWSSLA TETVRENAVTCSSGQVVKEFLLTSEEPERTNEGKCATSESWEQNMWKKVRISACASFI RARLLLQLTQLQQSSFALENNIEGQKDIDDKVARLGFNENSLLLMTKVMGQDLIPEKL KEEFQGEVKCIGAAVLSSLVTASGTEFEIKWFSNLQDGLCGFERQFSSDSYLPPSIT" assembly_gap 245329..245716 /estimated_length=388 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 258795..258805 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<261137..>263761) /locus_tag="N303_07776" mRNA complement(join(<261137..261759,262156..>263761)) /locus_tag="N303_07776" /product="Zinc fingers and homeoboxes protein 1" CDS complement(join(261137..261759,262156..263761)) /locus_tag="N303_07776" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="Zinc fingers and homeoboxes protein 1" /protein_id="KFO75486.1" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR015880" /db_xref="UniProtKB/Swiss-Prot:A1YF22" /translation="MASKRKSTTPCMVLANEQDPDLETVSDLEEVPPILAPTDNPTAE SVTSDEDVHEGVDSDNQKNTNKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTVNDLTFDGSFVR EENAEQADSPDVPSSGISISKTPIMKMMKNKPETKRIAVFHNVVEDIPGEEKGAENEP NSEEVVENPLPAVSESKASHSVVCSAADVAGAVVTPAPVLQPGVAQVITAVTAPQNSN VIPKVLIPVNSIPAYNTALDNNPLLLNTYNKFPYPTMSEITVLSTQAKYTEEQIKIWF SAQRLKHGVSWTPEEVEEARRKQFNGTVHTVPQTITVIPAHISAASNGLPSILQTCQI VGQPGLVLTQVAGANTLPVTAPIALTVAGVPNQTQLQKSQIHTAQPVAETKQVAAVPA PQPIKNESTLVNPDSFGIRAKKTKEQLAELKVSYLKNQFPQDSEIVRLMKITGLTKGE IKKWFSDTRYNQRNSKNNHGIHLNSDSCKKSPEQLHMLKSSFVRTQWPSPQEYNKLAE ETGLPRSEIVSWFGDTRYAWKNGGLKWYYYYQSASPNSLNGQGFSRKRGRGRPKGRGR GRPRGRPRGSKRLNCWDRGVSVIKFKTGAAILKDYYMKHKFLNEQDLDELVAKSHMGY EQVREWFAERQRRLELGIELFDENEEEDEMLEDQEDEEETDDSDTWEPPRHVKRKLSK SD" assembly_gap 282225..282254 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 282840..283073 /estimated_length=234 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 287259..287290 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 287674..287720 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<293341..>314893) /locus_tag="N303_07777" mRNA complement(join(<293341..293505,294769..294965, 295101..295233,296427..296612,298132..298315, 299909..300035,301257..301571,301985..302075, 303613..303772,304110..304198,304862..305036, 306288..306403,306627..306735,307666..307822, 309346..309468,312397..312469,313449..313545, 314799..>314893)) /locus_tag="N303_07777" /product="ATPase family AAA domain-containing protein 2" CDS complement(join(<293341..293505,294769..294965, 295101..295233,296427..296612,298132..298315, 299909..300035,301257..301571,301985..302075, 303613..303772,304110..304198,304862..305036, 306288..306403,306627..306735,307666..307822, 309346..309468,312397..312469,313449..313545, 314799..>314893)) /locus_tag="N303_07777" /note="GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]" /codon_start=1 /product="ATPase family AAA domain-containing protein 2" /protein_id="KFO75487.1" /db_xref="InterPro:IPR001487" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="UniProtKB/Swiss-Prot:Q6PL18" /translation="NEDLEVHRRCTLRERHYTTTNQSVLFDKLITNTAEAVLQKMDDM EKRRRRQMMEDLGVFHDAKEENLDMYSRGKKEIQRADEEIADNQVSSEESEEKDDDDD GEDGEDTRKRYDFRQRKTVERYQAPLQKFTLIFLIVSVNICRRRHAVHNSDSTSSSSS SSSDDEEHFERRRKRSCNRDLRCLPLNFRKDDLKGIHKDRMKIGASLADVDPMKIDCS VRFNGVGGLSDHISALKEMVIFPLLYPEVFERFKIQPPRGCLFYGPPGTGKTLVARAL ANECSQGDRRIAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPSIIFFDEIDGLAP VRSSKQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLF SLPNKEARKEIFKIHTQDWTPKPLDMFLEELAEKCVGYCGADIKSLCTEAALCALRRR YPQIYNSSEKLQLDIASIKITAKDFVVAMQKTVPASQRAVTSPGRALSPISKPLLENT LARILQALQRVFPHAELALKKDQQQDSLNYILRNHTIDSDEESPSIFEDKPTHKTPGR RKEEFLNFSRNAYYQPTSGRPRLLLVGEPGYGQASHLAPAIIHSLEKFPVYPLDLSIL FVNTTSAEETCAQLMREAQRTAPSIIYIPHIHLWWEAVGATVKATFTMLLQNIPTFAP VLLLATSDVRHADLPKEVRELFINDYEVFEVQLSSEAERRMFFEDLILNQAAKPPASK NNTAWQTLEVLPVAPPPKPRQLTEEEIRKLEEQEEDTLRELRIFLRDVTHRLAIDRRF RAFTKPVDPEEVPDYDAVIKQPMDLSAVLSKIDLHQYLTARDFLKDIDLICSNALEYN PDRDPGGE" assembly_gap 321477..321849 /estimated_length=373 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 323150..323342 /estimated_length=193 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <323743..>334946 /locus_tag="N303_07778" mRNA join(<323743..323841,324215..324265,326308..326456, 326799..326923,334819..>334946) /locus_tag="N303_07778" /product="Protein N-terminal glutamine amidohydrolase" CDS join(<323743..323841,324215..324265,326308..326456, 326799..326923,334819..>334946) /locus_tag="N303_07778" /note="GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]" /codon_start=1 /product="Protein N-terminal glutamine amidohydrolase" /protein_id="KFO75488.1" /db_xref="InterPro:IPR023128" /db_xref="UniProtKB/Swiss-Prot:Q3T0D3" /translation="EENVWKLCDYIRSQDRYPLEEFYAVFISNDRRMIPLWKQKSGHG DEPVVWDYHVILLHVSSGEQNFIYDLDTVLPFPCPFELYSVEAFRLDDSLRPEFHRKI RMIPADLYLKTFASDRSHMKDANGKWQKPPPSYPCIETADSKMNLDDFISMNPKVGWG SVFPLSVFVHRFSRQTDNYSSEGR" assembly_gap 343219..343228 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<356249..>372952) /locus_tag="N303_07779" mRNA complement(join(<356249..356335,357019..357162, 358329..358511,362353..362537,363421..363514, 370355..370447,371094..371143,372853..>372952)) /locus_tag="N303_07779" /product="F-box only protein 32" CDS complement(join(<356249..356335,357019..357162, 358329..358511,362353..362537,363421..363514, 370355..370447,371094..371143,372853..>372952)) /locus_tag="N303_07779" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="F-box only protein 32" /protein_id="KFO75489.1" /db_xref="InterPro:IPR001810" /db_xref="UniProtKB/Swiss-Prot:Q1A730" /translation="DDHNKENLFNSLNYDVAAKKRKKDLLNNKAKIQYFHQEKWIYVH KGSTKERHGYCTLGEAFNRLDFSSAILDSRRFNYVVRLLELIAKSQLTSLSGIAQKNY MNILEKVVQKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVHRMESI LHWQQQLNNIQITRPPFKGTTFTDLPLCLQLNIMQRLSDGRDLVSLGQVAPDLQVLSE DRLLWKKLCQYHFTDRQIRKRLILSDKGQLDWKKMYFKLIRCYPRKEQYGDTLQLCRH CHILSWKGTDHPCTANNPETCSTSLSPQEFINLFRF" assembly_gap 358023..358060 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 358980..359055 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 375882..375967 /estimated_length=86 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 382274..382478 /estimated_length=205 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 390000..390169 /estimated_length=170 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 391752..391802 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 398392..398430 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<412615..>417753) /locus_tag="N303_07780" mRNA complement(join(<412615..412901,414865..414970, 416404..>417753)) /locus_tag="N303_07780" /product="Kelch-like 38" CDS complement(join(412615..412901,414865..414970, 416404..417753)) /locus_tag="N303_07780" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Kelch-like 38" /protein_id="KFO75490.1" /db_xref="InterPro:IPR000210" /db_xref="InterPro:IPR006652" /db_xref="InterPro:IPR011333" /db_xref="InterPro:IPR011705" /db_xref="InterPro:IPR013069" /db_xref="UniProtKB/Swiss-Prot:Q2WGJ6" /translation="MEEESTEELLFKDQDFSSELLRQLNVLRHSRMLTDVTLCSGGFE IPCHRNVLASSSPYFKAMFCNDFRESRQAKVILNGINAETLDQIILYVYTGEILISTE NVLCLLETASMLQYTKLFEACSAYLQDKLTPDNCLSMVRLAKVLNCQSLNKKAKAMAL KCFPEVACSEDLKDLCPLELIDYLGDDELCGEEEQVFEALMVWIRHDLQERQRYIQEL FKKVRLQYVHPTFLFHFIANDSLIQSSATCRSILESAWRHMFSLYSTSVPDIKPMLHV PRRYSNQEFLIIIGGRKDSQQTTRDVLLYDDKTNQWLSLAKLPVRLYKASAVSLHSNI YVLGGMPISNKKSPVSDNIYIYSLKLNQWRTVEHMLVPRYSQRSLAYKNYILSFGGIG ENQEILNSVERYDSVYNACESMANMPVAVLHPAVAAKDQRVYLFGGEDIMQNPVRLIQ VYHVSRNMWFRMETRVVKNVCAPAVTIGDQIIIVGGYTRRIIAYDTKGNNFVKCADMK DRRMHHGATVIKNKLYVTGGRCLTVDNVIKDLDSLDCYDPETDTWTSKGKLPHKLFDH GCLTLQCVPCSNLL" assembly_gap 421468..421832 /estimated_length=365 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<425857..>435564) /locus_tag="N303_07781" mRNA complement(join(<425857..425973,427179..427291, 428118..428193,430117..430218,430441..430509, 432226..432305,432386..432419,433075..433245, 435466..>435564)) /locus_tag="N303_07781" /product="Annexin A13" CDS complement(join(<425857..425973,427179..427291, 428118..428193,430117..430218,430441..430509, 432226..432305,432386..432419,433075..433245, 435466..>435564)) /locus_tag="N303_07781" /note="GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005544 - calcium-dependent phospholipid binding [Evidence IEA]" /codon_start=1 /product="Annexin A13" /protein_id="KFO75491.1" /db_xref="InterPro:IPR001464" /db_xref="InterPro:IPR009166" /db_xref="InterPro:IPR018502" /db_xref="UniProtKB/Swiss-Prot:P27216" /translation="SGTDEKKIIEVLSSRTSAQRQQIKQKYKALYSKDMEEVLKGDLS GNFEKAVLALLDLPCEYEARELRKAMKGAGTDEALLIEILCTRSNKEIVSIKEAYKRL FDRDLESDVKSDTSGSLQKILVTVLEATRNETQQVNAELAEQDATDLYKAGEGRWGTD ELAFNVVLAKRSYSQLRATFQAYEKMCGKEIEESIKSETSGDLEKAYLTLVSCAKDCP GYFAALLHKSMKGAGTDEETLIRILVTRAESDLPAIKEKFQQMYKKSLAEAVRSDTSG DFRKLLLAILH" assembly_gap 458370..458454 /estimated_length=85 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <460935..>485768 /locus_tag="N303_07782" mRNA join(<460935..461028,461985..462136,463006..463063, 464657..464724,465979..466092,466870..466960, 468803..468865,469896..470002,470760..470798, 470902..471014,471906..472024,472430..472542, 472735..472821,473497..473629,474313..474461, 474937..475071,479517..479630,480541..480613, 481927..482076,482578..482685,482961..483084, 484060..484129,485601..>485768) /locus_tag="N303_07782" /product="Protein FAM91A1" CDS join(<460935..461028,461985..462136,463006..463063, 464657..464724,465979..466092,466870..466960, 468803..468865,469896..470002,470760..470798, 470902..471014,471906..472024,472430..472542, 472735..472821,473497..473629,474313..474461, 474937..475071,479517..479630,480541..480613, 481927..482076,482578..482685,482961..483084, 484060..484129,485601..>485768) /locus_tag="N303_07782" /codon_start=1 /product="Protein FAM91A1" /protein_id="KFO75492.1" /db_xref="UniProtKB/Swiss-Prot:Q658Y4" /translation="VFKGLGNSQKEYERQVVLYSIRNQLRYRNNLVKHVKKDERKYYE DLLKYSRDHLMLYPYHLSDIMVKGLRVTPFSYYTGIMEDIMNSEKSYDSLPNFTAADC LRLLGIGRNQYIDLMNQCRSSKKFFRRKTAHDLLPVKPVEIAIEAWWVVQSGYITEDD IKICTTSEKSAIDKIIDSGPQLAGSLDFNVVHSLYNKGFIYLDVPISDDSCIAVPPLE GFVMNRVQGDYFETLLYKIFVSIDEHTNVAELANVLEIDLSLVKNAVSMYCRLGFAHK KGQVINLDNLHPSWKNVPSVNRLKSTLDPQKMLLSWDSGENRSPVQEAGSSATDTDTN SQDDPAEIASVSSLNLSSGHTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKL SDESLDSFLVELEKVQSTGEGEAQRYFDHALTLRNTILFLRHNKDLGAQAVQPDQPSN GFPLDLLRCESLLGLDPATCSRVLNKNYTLLVSMAPLTNEIRPISSCTPQHIGPAIPE VSSVWFKLYIYHITGQGPPSLLLSKGTRLRKLPDIFQGYDRLLITSWGHDPGVVPTSN VLTMLNDALTHSAVLIQGHGMHGMGETMHIPFPFDEAEQQGDFSRVNMGIHTALKILR NKVDLQHFCGYVTMLNPSSRRANRKLSDASDGRGEADLASESDVNGSTESFEMVIEET PMDPAVKQSLEVPTTEQEWVPLELCFGIPLFSSELNQKVCRKIATHGLCGTESLQKLL HSSRKLSLQVLDFVHSFQEGISTLDQLHDAGSSSSPLQPISADMGVPLPAKNLMFKEG VISEWNGWSPSSVFFN" assembly_gap 461275..461514 /estimated_length=240 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 508959..509094 /estimated_length=136 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 551878..552196 /estimated_length=319 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 553372..616368 /locus_tag="N303_07783" /note="Fer-1-like 6; contains frameshift" assembly_gap 570552..570568 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 589341..589377 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 622302..622339 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 698645..698674 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 701473..701856 /estimated_length=384 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 705881..705944 /estimated_length=64 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 713707..713826 /estimated_length=120 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 735510..735574 /estimated_length=65 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<749530..>757037) /locus_tag="N303_07784" mRNA complement(join(<749530..749619,751183..751288, 752382..752424,753568..753622,754916..754983, 756977..>757037)) /locus_tag="N303_07784" /product="Transmembrane protein 65" CDS complement(join(<749530..749619,751183..751288, 752382..752424,753568..753622,754916..754983, 756977..>757037)) /locus_tag="N303_07784" /codon_start=1 /product="Transmembrane protein 65" /protein_id="KFO75493.1" /db_xref="InterPro:IPR019537" /db_xref="UniProtKB/Swiss-Prot:Q4VAE3" /translation="ILTSLEKLEVAPPSPGQLKHVFFHNALPFVGFGFLDNAIMIAAG TQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADM WQTRLSAHLGKAIGVTVGCLLGMFPLLFFGDEEEKLEEK" assembly_gap 790170..790179 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 796094..796117 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 804013..804037 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 810864..812159 /estimated_length=1296 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <815870..>817675 /locus_tag="N303_07785" mRNA <815870..>817675 /locus_tag="N303_07785" /product="E3 ubiquitin-protein ligase RNF139" CDS <815870..>817675 /locus_tag="N303_07785" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="E3 ubiquitin-protein ligase RNF139" /protein_id="KFO75494.1" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR011016" /db_xref="UniProtKB/Swiss-Prot:Q7TMV1" /translation="GVFVSSVVLVLQQRALFKFYMIASAFLLAATSVLVNYYASLHIN FYSAYYTAAFGIQIFPHKGPSLWMTLSILQLTFGIGYVTLLNVQSVYSQLIILDILIP VIGLVVELPLNVRKMLVFISGLVLTLNTTAILVTKIKWFYYSVRYVYLLVRHMYRIYG LQLLMEDTWKRIRFPAVLRVFWLTRLTAQAVVLTYVVKMSETNTEEKFFLISWDNCWE LICSLIISGCDSTLTVLGMSAVISSIAHYLGLGILAFIGSTDEDDKRLGFVAPVLFFI LALQTGLSGLKPEERLVRLSRNMCLLLTAVLHFIHGMTDPVLMSLSASHVSSFRRHFP VLFVSACLFILPVLLSYILWHHYALNTWLFAVTAFCVELCLKVIVSITVYILFMIDGY YNVLWEKLDDYVYYVRSTGNIIEFIFGVIMFGNGAYTMVFESGSKIRACMMCLHAYFN IYLQAKNGWKTFINRRTAVKKINSLPEVKGSRLHEIDDVCAICYHEFTTSARITPCNH YFHALCLRKWLYIQDTCPMCHQKVYIEDKENANISNNNGFVAPNENPVQVAEAAADAE NELNEDNDSSDSDEEDDDCVAPHLNEPLNVDSNSLG" gene complement(<818598..>831253) /locus_tag="N303_07786" mRNA complement(join(<818598..818694,820214..820340, 821257..821327,821986..822062,823404..823444, 823569..823654,827876..827918,828009..828152, 829427..829490,831203..>831253)) /locus_tag="N303_07786" /product="Putative deoxyribonuclease TATDN1" CDS complement(join(<818598..818694,820214..820340, 821257..821327,821986..822062,823404..823444, 823569..823654,827876..827918,828009..828152, 829427..829490,831203..>831253)) /locus_tag="N303_07786" /note="GO_function: GO:0016888 - endodeoxyribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]" /codon_start=1 /product="Putative deoxyribonuclease TATDN1" /protein_id="KFO75495.1" /db_xref="InterPro:IPR001130" /db_xref="UniProtKB/Swiss-Prot:Q6P8M1" /translation="DDFLDVVERAVRVGVKKFLITGGSLQDSKDALQLAQTNDMFYST VGCHPTRCGEFEQSSPAQYLSELKNLIEKNKTKVIAVGECGLDFDRLEFCPKDTQLKY FEKQFDLSEQTQLPMFLHCRNSHAEFLDILRRNRDRFVGGVVHSFDGTKEEAAAILDL DLYIGINGCSLKTEANLEALKSIPSERLMIETDAPWCGVKNTHAGSKYVKTTFPTKKK WEIGHCLKDRNEPCHIIQILEIMAAVREDDPLELANTLYNNTIKVFFPN" gene complement(<833106..>834113) /locus_tag="N303_07787" mRNA complement(join(<833106..833502,833881..>834113)) /locus_tag="N303_07787" /product="hypothetical protein" CDS complement(join(<833106..833502,833881..>834113)) /locus_tag="N303_07787" /codon_start=1 /product="hypothetical protein" /protein_id="KFO75496.1" /translation="VPVCVCVPLCVPVCPHGVCVSVSLCVSVSLCASLCVPVCAPTMC VCPSLCVGSCVYPCLCVPLCVSPCVPIVCVCPCAGPSVCVPMYPYVCPSVGVPMCVCV CPHVPLCLCVSLCVLLCVGPCVCVSICVPLWVRPCVCVSVCPPCVCVSLCVSLCVPLC VCVSSSVCMSPMCPPVHVSLCVYSPCVCPCVCPPLCLCPYVCPRTCVCLC" assembly_gap 834256..834404 /estimated_length=149 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 834882..834939 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <836515..>839865 /locus_tag="N303_07788" mRNA join(<836515..836709,838625..838738,839737..>839865) /locus_tag="N303_07788" /product="NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" CDS join(<836515..836709,838625..838738,839737..>839865) /locus_tag="N303_07788" /codon_start=1 /product="NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" /protein_id="KFO75497.1" /db_xref="InterPro:IPR008011" /db_xref="UniProtKB/Swiss-Prot:Q02369" /translation="RDKYRYLACLLRERFDKNKDVKDMVKATELLRAGQEEFWANQHP QPYIFPDSPGGTSYERYECYKIPEWCLDFWHPSEKAMYPDYFAKREQWKKLQRESWDK EVKQLEEETPAGGPTTEALPPARKEGHLPPLWWHYVTRPREIPM" gene complement(<845662..>878189) /locus_tag="N303_07789" mRNA complement(join(<845662..846158,847395..847557, 847900..848064,851424..851498,859454..859664, 861671..861768,862717..862824,864077..864234, 874978..875052,876787..876878,878104..>878189)) /locus_tag="N303_07789" /product="Metastasis suppressor protein 1" CDS complement(join(<845662..846158,847395..847557, 847900..848064,851424..851498,859454..859664, 861671..861768,862717..862824,864077..864234, 874978..875052,876787..876878,878104..>878189)) /locus_tag="N303_07789" /note="GO_function: GO:0008093 - cytoskeletal adaptor activity [Evidence IEA]; GO_function: GO:0017124 - SH3 domain binding [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0046847 - filopodium assembly [Evidence IEA]" /codon_start=1 /product="Metastasis suppressor protein 1" /protein_id="KFO75498.1" /db_xref="InterPro:IPR013606" /db_xref="UniProtKB/Swiss-Prot:O43312" /translation="GGTREIGSALTRMCMRHRSIESKLRQFSSALIDCLINPLQEQME EWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKGRGDIQPQLDSALQDVND KYLLLEETEKQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISDDLKSL TMDPHKLPSSSEQVILDLKGSDYSWSYQTPPSSPSTTMSRKSSVCSSLNSVNSSDSRS SGSHSHSPSSHYRYRSSNLPQQAPMRLSSVSSHDSGFMSQDAFQSKSPSPMPPEAPNQ NSSSSASSEASETCQSVSECSSPTSDWAKPGPYDQPMVNTLQRRKEKREPDLNGGAQS GPPVPSEEAQRPRSMTVSAATRQGEEMEACEELALALTRGLQLDTQRSSRDSLQCSSG YSTQTTTPCCSEDTIPSQVSDYDYFSVSGDQEAEQQEFDKSSTIPRNSDISQSYRRMF QTKRPASTAGLPTTLGPVIVTPGVATIRRTPSTKPSVRRGTIGGGPIPIKTPVIPVKT PTVPDIPGGLPGIPAGTEECPEQSPDSPAAGDGGQGVTNMPSSSWSGQASVNPPPSSQ KLSAADEQRQ" assembly_gap 873939..873996 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 902945..903170 /estimated_length=226 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 969455..969505 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 970212..970308 /estimated_length=97 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 977800..977810 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1033780..1033792 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1045091..1045133 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1050279..1050291 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1050903..>1066608 /locus_tag="N303_07790" mRNA join(<1050903..1051187,1054200..1054452,1054736..1054916, 1057575..1057671,1060987..1061100,1062706..1062877, 1063171..1063266,1063836..1063978,1065049..1065145, 1065676..1065763,1066416..>1066608) /locus_tag="N303_07790" /product="Squalene monooxygenase" CDS join(1050903..1051187,1054200..1054452,1054736..1054916, 1057575..1057671,1060987..1061100,1062706..1062877, 1063171..1063266,1063836..1063978,1065049..1065145, 1065676..1065763,1066416..1066608) /locus_tag="N303_07790" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]" /codon_start=1 /product="Squalene monooxygenase" /protein_id="KFO75499.1" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR013698" /db_xref="UniProtKB/Swiss-Prot:Q14534" /translation="MWTFLGIASFIYIYKKCGDLMTYANKEVLLSMLVFFSLGLLLSY RYHFRGPKQQQRRKTHLGMLSDVLSTLPLVGFFWAKPTPGSQQVKEPKSRKDKAEADV CDVHLTETAPSTTAAPQYDPEIIIVGSGVLGSSLATVLSRDGRKVTVIERDLKEPDRI VGELLQPGGVNALKDLGLEDTVEGIDSQIVNGYIIHDIESNSEVEIPYPTSEDGRVVS GRSFHHGQFIMGLRKAAMAEPNAKFIEGTVLQLLEEDDCVVGVQYKDKETGDTKELHA PLTVVADGLFSKFRKTLVSNKVTVSSHFVGCILKDTPQFKANYAELVLAKTSPVLVYQ ISSTETRVLVDIRGEMPKNLKEYMIENVHPQLPDHLKEQFLIAVQNDRLRTMPASFLP PSAVNKKGVLLLGDAYNIRHPLTGGGMSVVLNDVKIWRTLLQDIPDLYEDSDILKAKK TFYWSRKKSHSFVVNVLAQALYELFAGTDDSLHQLKKACFHYFRLGGECVSGPVGLLS VLSPKPMVLIGHFFAVALYAVYFCFKSESWITTPRAFFNSGAILYRSCSIIFPLIYSE MQYLVY" gene complement(<1077054..>1101930) /locus_tag="N303_07791" mRNA complement(join(<1077054..1077107,1078356..1078443, 1078568..1078721,1079125..1079221,1079333..1079462, 1079921..1080024,1081039..1081118,1081234..1081336, 1082078..1082240,1082654..1082778,1083480..1083659, 1084281..1084382,1085034..1085114,1086526..1086666, 1086778..1086888,1087590..1087665,1088316..1088482, 1089123..1089235,1090319..1090448,1091254..1091381, 1092243..1092414,1093550..1093663,1096076..1096228, 1096954..1097146,1097947..1098047,1098319..1098403, 1099317..1099462,1101736..>1101930)) /locus_tag="N303_07791" /product="WASH complex subunit strumpellin" CDS complement(join(<1077054..1077107,1078356..1078443, 1078568..1078721,1079125..1079221,1079333..1079462, 1079921..1080024,1081039..1081118,1081234..1081336, 1082078..1082240,1082654..1082778,1083480..1083659, 1084281..1084382,1085034..1085114,1086526..1086666, 1086778..1086888,1087590..1087665,1088316..1088482, 1089123..1089235,1090319..1090448,1091254..1091381, 1092243..1092414,1093550..1093663,1096076..1096228, 1096954..1097146,1097947..1098047,1098319..1098403, 1099317..1099462,1101736..>1101930)) /locus_tag="N303_07791" /codon_start=1 /product="WASH complex subunit strumpellin" /protein_id="KFO75500.1" /db_xref="InterPro:IPR019393" /db_xref="UniProtKB/Swiss-Prot:Q5R5P0" /translation="SFTMVDFLAENNLCGQAILRIVSCGNAIIAELLRLSEFIPGVFR LKDKADQQKYGDIIFDFSYFKGPETCEGRLEAKPELLDLDEEFRENNIEILTRFYLAF QSVHKYIVDLNRYLDDLNEGIYIQQTLETVLLNEDGKQLLCEALYLYGVMLLVIDQKI EGEVRERMLVSYYRYSAARSSADSNLDDICKLLRSTGYSSQPGAKRPPNYPESYFSRV PISETFISMVIGRLRSDDIYNQVSAYPLPEHRSTALATQAAMLYVILYFDPSILHTQQ AKMREIVDKYFPDNWVISIYMGIAVNLAEAWEPYKAAKTALNYTLDLSNVKEQASRYA AVTERVHTQVQQFLKEGCLREELVLDNIPKLLNCLRDCNVAIRWLMLHTADTACDPNN KRLRQIKDQILTDSRYNPRILFQLLLDTAQFEFILKEMFKQMLSEKQAKWENYKKEGS ERMTELADVFSGVKPLTRVEKNENLQAWFREISKQIMSLNYDDSTAAGRKTVQLIQAL EEVQEFHQLETNLQVCQFLADTRKFLHQMIRTINIKEEVLITMQIVGDLSYAWQLIDS FTSIMQESIRVSPSMVTKLRATFLKLASALDLPLLRINQANSPDLLSVSQYYSGELVS YVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDKDKLRDYAQLGPRYEVAKLTHA ISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVALALHRGLIFNPRARPSEL MPKLKEMAATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRIINYNVEQECNNFLRTKIQ DWQSIYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKITCYIDQMNTWYDTKTHQ EVTNSRLFSEIQDTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKNILRDRTVQDTLKA LMNAVSPLRGIIANSNKVYSTAIAKTQKIWTAYLDSIMKVGQMQILRRQITNELNYSC RFDSKHLAAALENLNKATLADIEAHYQNPSLPYPKEDNTLLYEITAYLEAAGIHNPLN KIYITTKRLPYFPTVNFLFLISQFPKLQYTRNLGVVCKRPADQIDWLPLVLGLLTLLK QFHSRYTEQFLALIGQFIHSTMEQCTSQKIPEMPADVVGALMFLEDYIRYTKLPRKVV EAHVPSFIFDEFRTVL" gene <1107117..>1241070 /locus_tag="N303_07792" mRNA join(<1107117..1107231,1132929..1133035,1167111..1167264, 1237143..1237228,1237549..1237655,1240974..>1241070) /locus_tag="N303_07792" /product="E3 SUMO-protein ligase NSE2" CDS join(<1107117..1107231,1132929..1133035,1167111..1167264, 1237143..1237228,1237549..1237655,1240974..>1241070) /locus_tag="N303_07792" /note="GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="E3 SUMO-protein ligase NSE2" /protein_id="KFO75501.1" /db_xref="InterPro:IPR004181" /db_xref="UniProtKB/Swiss-Prot:Q4V8A0" /translation="ISFNSVDNALSSLKNCQSYIDTGMHIATHVALDLVESFNDVEDI NSMENVMLEYAAMDRELNHYMTAVEETVNQIKREKPEVLPDLKNLVKEKFTALESKNS DSDLQRNEKFVYFKDQLKEMRKQYNDNEAIEQIDEDIAVTQSQMNFICPITQVEMKRP VRNKICGHTYEEDAIQKIIQTRKQQKKKVRCPKIGCSHADVKESDLVPDEALKRAIDS QNKQ" assembly_gap 1142195..1142260 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1195500..1195586 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1210740..1210759 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1251142..1251467 /estimated_length=326 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1254589..>1254876 /locus_tag="N303_07793" mRNA <1254589..>1254876 /locus_tag="N303_07793" /product="Tribbles 1" CDS <1254589..>1254876 /locus_tag="N303_07793" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]" /codon_start=1 /product="Tribbles 1" /protein_id="KFO75502.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/Swiss-Prot:Q96RU8" /translation="LVGRYPFHDSDPSTLFSKIRRGQFCIPDHVSPKARCLIRSLLRR EPSERLTAPEILLHPWFEAVLEPGYTDQETGTSDQIVPEYHGDSDDISSFFC" assembly_gap 1277824..1278506 /estimated_length=683 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1281734..1281910 /estimated_length=177 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1302139..1302190 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1383094..1383125 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1384816..1384845 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1390241..1390281 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1398403..1398420 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1411690..1412460 /estimated_length=771 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1425174..1425188 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1433285..>1433614 /locus_tag="N303_07794" mRNA <1433285..>1433614 /locus_tag="N303_07794" /product="hypothetical protein" CDS <1433285..>1433614 /locus_tag="N303_07794" /codon_start=1 /product="hypothetical protein" /protein_id="KFO75503.1" /translation="PMIQEEGVRDLLAQLDTHKSIGPDGVHPRVLKELVVVLSKPLSI IFQQSWLTGDVPLNWRLADVVPIYKKGCREDPGNYRPVSLTSVPGKVMEQVILSFIMK HMQENRVI" assembly_gap 1548306..1548353 /estimated_length=48 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1586959..1587308 /estimated_length=350 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1608374..1608398 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 1636361..1637098 /locus_tag="N303_07795" /pseudo assembly_gap 1638268..1644190 /estimated_length=5923 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1650052..1650149 /estimated_length=98 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1691869..1691878 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1702116..>1702961) /locus_tag="N303_07796" mRNA complement(<1702116..>1702961) /locus_tag="N303_07796" /product="Protein FAM84B" CDS complement(<1702116..1702961) /locus_tag="N303_07796" /codon_start=1 /product="Protein FAM84B" /protein_id="KFO75504.1" /db_xref="InterPro:IPR007053" /db_xref="UniProtKB/Swiss-Prot:Q96KN1" /translation="MGNQVEKLTHLNYKEVPTADPTGMDRDEGPRIGVSYIFSNDDDE LEQQQDSVHDLGGEHPALQPYDPQVHEVECSVYYRDECIYQKSFSEEDVLPEESDEGG RGHLNTYTPENLLNRCKPGDLVEFVCQAQYPHWVVYVGDFQVVHLHRLEVVNSFLTDA SQGRRGRIANQLYRYKPLSPAVVVRNALEQVGCKDRDLSWRNSECFAAWCRYGKREFK IGGELRIGKQPYRLQIRLGEKRSHTLEFQSLEDLIMEKRRNDQIGRAAVIQELSSHLQ DAEEEE" assembly_gap 1703190..1703729 /estimated_length=540 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1706232..1707281 /estimated_length=1050 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1717241..1717610 /estimated_length=370 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1719732..1719782 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1756695..1758777 /estimated_length=2083 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1760249..1760352 /estimated_length=104 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1785153..1785194 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1792160..1792224 /estimated_length=65 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1812628..1812706 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1831419..1831453 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1889588..1890536 /estimated_length=949 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1910391..1910946 /estimated_length=556 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1917474..1917512 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2017275..2017319 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2084032..2084606 /estimated_length=575 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2098378..2098437 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2114430..2114441 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2143092..2143154 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2143839..2144823 /estimated_length=985 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <2144826..>2146502 /locus_tag="N303_07797" mRNA join(<2144826..2144985,2145904..>2146502) /locus_tag="N303_07797" /product="hypothetical protein" CDS join(<2144826..2144985,2145904..>2146502) /locus_tag="N303_07797" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="KFO75505.1" /db_xref="InterPro:IPR002418" /db_xref="InterPro:IPR003327" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR012682" /translation="LHDLGAAAADCIDPSVVFPYPLSERAPRAAGAPGSSPSSLLGDD TPPTTSSDSDQLISLFFFFFLAEEEQEEDEEIDVVTLAEANESESSTESSTDTSEEHS KPHHSPLVLKRCHVNIHQHNYAAPPSTKVEYPAAKRLKLDSGRVLKQISNNRKCSSPR TSDSEENDKRRTHNVLERQRRNELKLSFFALRDQIPEVANNEKAPKVVILKKATEYVL SIQSDEHRLIAEKEQLRRRREQLKHKLEQLRNSCA" assembly_gap 2164213..2164665 /estimated_length=453 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2193475..2193760 /estimated_length=286 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2194530..2194542 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2217513..2217553 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 2266586..2267326 /locus_tag="N303_07798" /pseudo assembly_gap 2270736..2271170 /estimated_length=435 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2288924..2288949 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2320684..2320695 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2355243..2356060 /estimated_length=818 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2386441..2386864 /estimated_length=424 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2388756..2388835 /estimated_length=80 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2402308..2402321 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2413438..2413448 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2444323..2444341 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2493949..2493990 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2525180..2525738 /estimated_length=559 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2574104..2574514 /estimated_length=411 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2578794..2578880 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2590665..2590711 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2592184..2592599 /estimated_length=416 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2629052..2629066 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2659066..2659076 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2660511..2660645 /estimated_length=135 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2699780..2699792 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2723133..2723509 /estimated_length=377 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2744098..2745222 /estimated_length=1125 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2768951..2768962 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2790662..2790713 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2796906..2797170 /estimated_length=265 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2825735..2825749 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2845026..2845071 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<2849148..>2849309) /locus_tag="N303_07799" mRNA complement(<2849148..>2849309) /locus_tag="N303_07799" /product="hypothetical protein" CDS complement(<2849148..>2849309) /locus_tag="N303_07799" /codon_start=1 /product="hypothetical protein" /protein_id="KFO75506.1" /translation="GIKLERGRFRLDIRKNFFTMRVVRHWNRLPREVADAPSLEVFKA KLDGALGSLV" assembly_gap 2868339..2868480 /estimated_length=142 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2898823..2898871 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2907972..2908292 /estimated_length=321 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<2925805..>2939166) /locus_tag="N303_07800" mRNA complement(join(<2925805..2925879,2926690..2926816, 2928033..2928112,2929301..2929413,2929499..2929580, 2930216..2930352,2931416..2931521,2933138..2933259, 2939094..>2939166)) /locus_tag="N303_07800" /product="Protein FAM49B" CDS complement(join(<2925805..2925879,2926690..2926816, 2928033..2928112,2929301..2929413,2929499..2929580, 2930216..2930352,2931416..2931521,2933138..2933259, 2939094..2939166)) /locus_tag="N303_07800" /codon_start=1 /product="Protein FAM49B" /protein_id="KFO75507.1" /db_xref="InterPro:IPR009828" /db_xref="UniProtKB/Swiss-Prot:Q9NUQ9" /translation="MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLK DAEGILEDLQSYRGAGHEIREAIQHPNDEKLQEKAWGAVVPLVGKLKKFYEFSQRLEA GLRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYR RTLSRMRINNVPVEGENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIE NTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKT SKIDMKGCIKVLKDQPPNSVEGLLNALRY" assembly_gap 2928884..2928963 /estimated_length=80 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2940942..2941340 /estimated_length=399 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2960860..2960899 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2965368..2966022 /estimated_length=655 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2999561..2999789 /estimated_length=229 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3011829..3012113 /estimated_length=285 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3023472..3023868 /estimated_length=397 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(3033762..3159167) /locus_tag="N303_07801" /note="Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1; contains frameshift" gene 3055871..3056605 /locus_tag="N303_07802" /pseudo assembly_gap 3091257..3091296 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3121142..3121308 /estimated_length=167 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 3137707..3138443 /locus_tag="N303_07803" /note="contains frameshift" assembly_gap 3159611..3160063 /estimated_length=453 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3187825..3187959 /estimated_length=135 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3273303..3273342 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3300303..3300322 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3324704..3324757 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3341848..3341950 /estimated_length=103 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3363011..>3484570) /locus_tag="N303_07804" mRNA complement(join(<3363011..3363124,3365404..3365496, 3370461..3370607,3374932..3375090,3380776..3380857, 3383538..3383710,3385020..3385109,3390111..3390312, 3397134..3397234,3403278..3403475,3409664..3409934, 3414153..3414311,3424514..3424641,3435728..3435839, 3438277..3438407,3456835..3456984,3484043..>3484570)) /locus_tag="N303_07804" /product="Adenylate cyclase type 8" CDS complement(join(<3363011..3363124,3365404..3365496, 3370461..3370607,3374932..3375090,3380776..3380857, 3383538..3383710,3385020..3385109,3390111..3390312, 3397134..3397234,3403278..3403475,3409664..3409934, 3414153..3414311,3424514..3424641,3435728..3435839, 3438277..3438407,3456835..3456984,3484043..>3484570)) /locus_tag="N303_07804" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0004016 - adenylate cyclase activity [Evidence IEA]; GO_function: GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA]; GO_process: GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]" /codon_start=1 /product="Adenylate cyclase type 8" /protein_id="KFO75508.1" /db_xref="InterPro:IPR001054" /db_xref="InterPro:IPR009398" /db_xref="UniProtKB/Swiss-Prot:P40145" /translation="WGYTYRGVIFPTLRNSFKSRDLERLYQRYFLGQRRKSEVVMNIL DVLTKLTLLFLHLTLASAPMDPIKGILLGFFTGIEVVICALVVVRKDTTSYTYLQYSG VVTWVAMATQILAAGLGFGLLGDGIGYVLFTLFATYSMLPLPLTWAILAGLVTSVLQL VMQLVIPRLAVTSLNQIVAQAVLFMCMNTAGIFISYLSDRAQRQAFLETRRCVEARLR LETENQRQERLVLSVLPRFVVLEMINDMTNVEDEHLQHQFHKIYIHRYENVSILFADV KGFTNLSTTLSAQELVRMLNELFARFDRLAHEHHCLRIKILGDCYYCVSGLPEPRQDH AHCCVEMGLSMIKTIRYVRSRTKHDIDMRIGIHSGSVLCGVLGLRKWQFDVWSWDVDI ANKLESGGIPGRIHISKATLDCLNGDYKVEEGHGKERNEFLRKHNIETYLIKQPEESL LTLPEDIVKEAVSSSDRRNSGATFTEGSWSPELPFDNIVGKQNTLAALTRNSINLLPN HLAQALHVQSGPEEINKRIEHTIDLRSGDKLRREHIKPFSLMFKDSSLEHKYSQMRDE VFKSNLVCAFIVLVFITAIQSLLPSSRVIPMVIQFSILIMLHSALVLITTAEDYKCLP LMLRKTCCWINETYLARNVIIFASILINFLGAIINILWCDFDKPVALKNQTFNSSASF TDICSYPEYFVFTGVLAMVTCAVFLRLNSVLKLAVLLIMIAIYSLLTETIYASLFLQY DNFNHNGDTDFLGTKEASLLLMAMFLLAVFYHGQQLEYTARLDFLWRVQAKEEINEMK ELREHNENMLRNILPSHVARHFLEKDRDNEELYSQSYDAVGVMFASIPGFADFYSQTE MNNQGVECLRLLNEIIADFDELLGEERFQDIEKIKTIGSTYMAVSGLSPEKQQCEDKW GHLCALADFSIALNESIQEINKHSFNNFELRI" assembly_gap 3379603..3379718 /estimated_length=116 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3422581..3422626 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3465196..3465238 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3481647..3481682 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3482010..3482446 /estimated_length=437 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3484704..3486150 /estimated_length=1447 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3554723..3554809 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3572820..3572845 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3598847..3599888 /estimated_length=1042 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3601214..3601232 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3605570..3605592 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3684738..3684798 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3688162..3688173 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3701932..3701992 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3723463..3723499 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3766893..3767582 /estimated_length=690 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3798546..3798656 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3799330..>3799512) /locus_tag="N303_07805" mRNA complement(<3799330..>3799512) /locus_tag="N303_07805" /product="hypothetical protein" CDS complement(<3799330..>3799512) /locus_tag="N303_07805" /codon_start=1 /product="hypothetical protein" /protein_id="KFO75509.1" /translation="LCIYVYMYICIYVYMYICIYVYMYICIYVYMYICIYVYMYICIY VYMYICIYVYIHIFAHI" gene <3825442..>3881876 /locus_tag="N303_07806" mRNA join(<3825442..3825528,3827148..3827275,3828947..3829097, 3837237..3837358,3840073..3840222,3846361..3846498, 3851705..3851783,3852676..3852811,3854423..3854587, 3856405..3856516,3857402..3857453,3860844..3861016, 3861452..3861527,3863636..3863797,3864950..3865081, 3868998..3869065,3870078..3870205,3875312..3875400, 3878655..3878703,3879841..3879944,3880529..3880578, 3881774..>3881876) /locus_tag="N303_07806" /product="Protein EFR3 A" CDS join(<3825442..3825528,3827148..3827275,3828947..3829097, 3837237..3837358,3840073..3840222,3846361..3846498, 3851705..3851783,3852676..3852811,3854423..3854587, 3856405..3856516,3857402..3857453,3860844..3861016, 3861452..3861527,3863636..3863797,3864950..3865081, 3868998..3869065,3870078..3870205,3875312..3875400, 3878655..3878703,3879841..3879944,3880529..3880578, 3881774..>3881876) /locus_tag="N303_07806" /note="GO_function: GO:0005488 - binding [Evidence IEA]" /codon_start=1 /product="Protein EFR3 A" /protein_id="KFO75510.1" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/Swiss-Prot:Q641A2" /translation="LSAGVCCCCAALRPRYKRLVDNIFPEDPKDGLVKADMEKLTFYA VSAPEKLDRIGAYLAERLTRDVVRHRYGYVLIAMEALDQLLMACHSQSIKPFVESFLH MVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCDHDPEI QTEIRIAGIRGIQGVVRKTVNDELRATIWEPQHMDKIVPSLLFNMQKIEDIDSRIGPP SSPTAGEKEENPALLAENCFRELLGRATYGNMNNAVRPVFAHLDHHRLWDPNEFAVSC FKIIMYSIQAQYSHHVIQEILGHLDVRKGDSPRVRAGIIQVLLEAVAIAAKGSIGPTV LEVFNTLLKHLRISVDFELGDRRSSAGSATFSTSSKESDERIVQNAIIQTIGFFGSNL PDYQRSEIMMFIMGKVPVLGTSRSLDTTHLGDLGTRRIQIMLLRSLLMVTSGYKATTI TNALPPPFLDPLLSPSLMEDSELRQLVLEILHNLIDRHDNRAKLRGIRIIPDVSDLKI KRDKISRQDVSFMKKHGQQLYRHIYLGCKEEDNVQKNFELLFTSLALITIELANEEVV IDLIRLAIALQDIAIINEDNLPMFNRCGVMALVAAYLNFLSQMIAVPAFCQHVSKVIE TRSLEASYFLPETIFKDKCNLPKSLEKDEKNLFFLTNKIAESLGGSGYSVERLSVPYV PQVTDEDRLSRRKSIVDTVSIQVDILPGNNTEDKVDNTEEITFEALKKAIDNNGLEEQ EKEKRRLVIEKFQKAPFEEIAAQCETKANLLHDRLAHILELTIRPPPSPSGTMTITAG HAHYQSVPVYEMKFPDLCVY" gene complement(3865327..3866060) /locus_tag="N303_07807" /note="contains frameshift" assembly_gap 3866675..3867202 /estimated_length=528 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3880096..3880113 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3890123..>3911252) /locus_tag="N303_07808" mRNA complement(join(<3890123..3890433,3890910..3891016, 3891409..3891583,3893763..3893854,3894218..3894383, 3896632..3896682,3898836..3898892,3899567..3899608, 3901127..3901255,3902548..3902660,3905839..3906013, 3906283..3906408,3911207..>3911252)) /locus_tag="N303_07808" /product="Otoconin-90" CDS complement(join(3890123..3890433,3890910..3891016, 3891409..3891583,3893763..3893854,3894218..3894383, 3896632..3896682,3898836..3898892,3899567..3899608, 3901127..3901255,3902548..3902660,3905839..3906013, 3906283..3906408,3911207..3911252)) /locus_tag="N303_07808" /note="GO_function: GO:0004623 - phospholipase A2 activity [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]" /codon_start=1 /product="Otoconin-90" /protein_id="KFO75511.1" /db_xref="InterPro:IPR001211" /db_xref="InterPro:IPR016090" /db_xref="UniProtKB/Swiss-Prot:Q9Z0L3" /translation="MIVILLMSMSMLLYSVWGQLLPFTFLKRSVVCLFFNLGNATFFN GVFQNVESVTLFFDCLGSHFTWLQSIFTNFPALLNFVNKMKCVTGFCPRDFEDYGCSC RFEMEGLPMDEADNCCFQHRKCYEEAVEMECTWDPSKISTDISCSTENLTCESEDPCE QFLCNCDKDAIECFVNTHINSSLNGLDVSFCPSLVTETTSKKDMTTLHTKEFLHRGTG KTQAATASMEEVISFEPTVVVLGNSKAGEEGGFMEAVVSVEEITTSPASFPGDSNSMQ VKNKYQNVATEKIPVGTSARTKEKGNPARGGQSTVSSAIALKMVLSDTGPHESAGKAC ERLTFLQERGNGRAKRELPQLGEMLYCLTERCPEEFESYGCYCGREGRGYPSDALDRC CFSHHCCLEQVKKLGCHAERSSRSEVVCFDHKPKCIGWTICEKLLCACDETAAGCMAS AFFNESLKFPHSQECQGEKFSCQRVPYERPSVGTETGTGISSSEESSEEEGPLRSVFR RAKREAYHPVGNSRAMQHEGR" assembly_gap 3892499..3892958 /estimated_length=460 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3905285..3905339 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3906577..3907687 /estimated_length=1111 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3928247..>3931250) /locus_tag="N303_07809" mRNA complement(join(<3928247..3928326,3928435..3928491, 3929052..3929135,3930492..3930575,3930668..3930751, 3931166..>3931250)) /locus_tag="N303_07809" /product="HERV-H LTR-associating protein 1" CDS complement(join(<3928247..3928326,3928435..3928491, 3929052..3929135,3930492..3930575,3930668..3930751, 3931166..>3931250)) /locus_tag="N303_07809" /codon_start=1 /product="HERV-H LTR-associating protein 1" /protein_id="KFO75512.1" /db_xref="UniProtKB/Swiss-Prot:Q3TYV2" /translation="SELPAKSVDLAAINLTELVNGMVNTALRGTKKLFSLLSITSYSS LAFHKVSVTIYNISNMKNVDPGTFPMHYCYCLNNVTNDLTDFTALLVDIIGNTTSYLT EIFKSTSILSVSQNNDSDCIYICVMAGQTGRNLSDFWEILEKSPVINYTFSSNTSS" assembly_gap 3936890..3936900 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3951320..>3982329) /locus_tag="N303_07810" mRNA complement(join(<3951320..3952054,3953017..3953101, 3954845..3954943,3956328..3956459,3958659..3958761, 3959829..3960016,3971033..3971059,3972745..3972839, 3974217..3974312,3974912..3975022,3976608..3976763, 3978470..3978642,3980402..3980528,3982237..>3982329)) /locus_tag="N303_07810" /product="Potassium voltage-gated channel subfamily KQT member 3" CDS complement(join(<3951320..3952054,3953017..3953101, 3954845..3954943,3956328..3956459,3958659..3958761, 3959829..3960016,3971033..3971059,3972745..3972839, 3974217..3974312,3974912..3975022,3976608..3976763, 3978470..3978642,3980402..3980528,3982237..>3982329)) /locus_tag="N303_07810" /note="GO_component: GO:0008076 - voltage-gated potassium channel complex [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005249 - voltage-gated potassium channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]" /codon_start=1 /product="Potassium voltage-gated channel subfamily KQT member 3" /protein_id="KFO75513.1" /db_xref="InterPro:IPR003091" /db_xref="InterPro:IPR003937" /db_xref="InterPro:IPR003948" /db_xref="InterPro:IPR005821" /db_xref="InterPro:IPR013821" /db_xref="InterPro:IPR020969" /db_xref="UniProtKB/Swiss-Prot:O43525" /translation="RFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAIFIFGAEFA LRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIASVPVVAVGNQGNVLATSLRSLR FLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEKDVPE KDANGVEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFFAL PAGILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRIDLVATWRFYES IVSFPFFRKEQLDGTASQKLGLLDRVRGTNTKGKLFTPLNVDAIEESPSKEPKNVVLN NKERFRTAFRMKAYAFWQTSEDAGTGENIAEERGDSSDFLMEDMIPTFKTAIRAVRIL QFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTRVDMIFTPGPPSTPKHK KSQKGGAFSYPSQQSPRNDPYVAKASTADTEDQSMMGKFVKVERQVNDMGKKLDFLVD MHMHHMEQLQVQVAEISPLKDTASPAKEKREDNKYSELKTIIYKYTEQCAHESPYNFQ QVPVNKVSPYGFSAHGHMTHSQPLSIGGQNSGRLQATPSSTSYAERPTVLPIFTLMDS QVSYHSHGDLQSPYSDKVSPRQRRSLTRDSDTPLSLLSVNHEELERSPSGFSISQERD DFPFGLNGGSAWMREKRYLAEGETDTDTDPFTPSGSMPLSSTGDGISDSVWTPSNKPV " assembly_gap 3968321..3968330 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3977098..3977117 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3994308..3994325 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4031657..4031669 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4033666..4035432 /estimated_length=1767 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4039117..4039130 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4054783..4055292 /estimated_length=510 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4080345..4080367 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4152838..4153765 /estimated_length=928 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4193373..4193386 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(4202816..4236036) /locus_tag="N303_07811" /note="Protein tilB; contains frameshift" assembly_gap 4240113..4240673 /estimated_length=561 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4250248..>4256203) /locus_tag="N303_07812" mRNA complement(join(<4250248..4250318,4250501..4250550, 4251065..4251140,4252381..4252550,4253356..4253568, 4254688..4254745,4256164..>4256203)) /locus_tag="N303_07812" /product="Transmembrane protein 71" CDS complement(join(<4250248..4250318,4250501..4250550, 4251065..4251140,4252381..4252550,4253356..4253568, 4254688..4254745,4256164..4256203)) /locus_tag="N303_07812" /codon_start=1 /product="Transmembrane protein 71" /protein_id="KFO75514.1" /db_xref="UniProtKB/Swiss-Prot:Q149F5" /translation="MYGISHVASTPRASSTAFNGEHRQSLSRHIFQSYACAFLDDDPA YECCSTNPLTGSLPTCRRSPRLLSNGYYVLTEDSFLSDEEGNITLMPSQTSVIYKENL VRIFRRRKKTHRSLASLFNLGASSTWLSSTILSNMDSCHVDDPWPEGCSKLEASQSDI ESRTVRNVLSQTVALIMCLIISVCTRYFLGGFSAILLLIILIFLLSQHTAVSSFFSLD ASFKSTKF" assembly_gap 4271767..4272107 /estimated_length=341 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 4272941..4313523 /locus_tag="N303_07813" /note="PHD finger protein 20-like 1; contains frameshift" assembly_gap 4302159..4302183 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4309455..4309470 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4318280..>4322961 /locus_tag="N303_07814" mRNA join(<4318280..4318474,4321924..4322086,4322819..>4322961) /locus_tag="N303_07814" /product="PHD finger protein 20-like 1" CDS join(4318280..4318474,4321924..4322086,4322819..4322961) /locus_tag="N303_07814" /codon_start=1 /product="PHD finger protein 20-like 1" /protein_id="KFO75515.1" /db_xref="UniProtKB/Swiss-Prot:A8MW92" /translation="MEETYITSEHSYQKPQSFGQDCKAVTDPMSSDDEDTSSFEEDQE FHTENKNCLQYSFKDDGMNEQNSAEGNTVFVCNERKGSEEQMDTHLQWQLNLLTHIEN VQNEVTSRMDLIEKEVDVLESWLDFTGELEPPDPLARLPQLKRRIKQLLIDMGKVQQI ATLCSV" assembly_gap 4332723..4334290 /estimated_length=1568 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 4343680..4488189 /locus_tag="N303_07815" /note="Thyroglobulin" /pseudo assembly_gap 4384519..4384610 /estimated_length=92 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4389133..4389178 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4433290..>4443021) /locus_tag="N303_07816" mRNA complement(join(<4433290..4433506,4434441..4434573, 4436525..4436656,4437877..4437980,4439263..4439349, 4442912..>4443021)) /locus_tag="N303_07816" /product="Src-like-adapter" CDS complement(join(<4433290..4433506,4434441..4434573, 4436525..4436656,4437877..4437980,4439263..4439349, 4442912..>4443021)) /locus_tag="N303_07816" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Src-like-adapter" /protein_id="KFO75516.1" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001452" /db_xref="UniProtKB/Swiss-Prot:Q60898" /translation="SLTGQESDFLAVLYDYPSADISQPIFHVGEKLRVLSDEGGWWRV HSLTTGRENYIPGKYVAKVYHGWLFEGLGREKAEELLQLPNTKVGSFMIRESETRKGL YSLSVRHRQVKHYRIFRLPNNWYYISPRQTFQCLEDLVNHYSEVADGLCCVLTTPCLT QCTNNNSLVNQVPPVVMRNKTFNWRNIHRLEMTEDTESTLAAIDDSCLSYGLRESIAS YLSLTGGDNASFASARKKKAQSLIYTGSKRKSTLHLPPTYYED" assembly_gap 4473818..4473838 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4513186..4513223 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4535588..>4569705 /locus_tag="N303_07817" mRNA join(<4535588..4535691,4562686..4562936,4566611..4566868, 4568679..4568872,4569406..>4569705) /locus_tag="N303_07817" /product="WNT1-inducible-signaling pathway protein 1" CDS join(4535588..4535691,4562686..4562936,4566611..4566868, 4568679..4568872,4569406..4569705) /locus_tag="N303_07817" /note="GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0005520 - insulin-like growth factor binding [Evidence IEA]; GO_process: GO:0001558 - regulation of cell growth [Evidence IEA]" /codon_start=1 /product="WNT1-inducible-signaling pathway protein 1" /protein_id="KFO75517.1" /db_xref="InterPro:IPR000867" /db_xref="InterPro:IPR000884" /db_xref="InterPro:IPR001007" /db_xref="InterPro:IPR006207" /db_xref="InterPro:IPR006208" /db_xref="UniProtKB/Swiss-Prot:O95388" /translation="MRWLLPWILATSSILQVSLETAGETSANTLGVSAHPTIPAVTEA YTRTQYCKWPCECPKFPPRCSVGVSLVTDGCDCCKMCAKQRGESCTEADTCDFHRGLY CDYSGDRPRYEIGVCAQIVGVGCVLNGVRYNNGDTFQPNCKYNCTCINGAVGCVPMCT NSRPPLVWCPNPKLIKMAGKCCEQWICDDSKKIRKTSPRHISSAAYEGEDEAWQKNCI VHTSSWSPCSKTCGLGISTRISNDNDQCRLLKESRLCNMRPCEVDITQHIKPGKKCLA VYRANEPMNYTISGCVSKSPYRPKYCGICTDNRCCTPYKSKTIEVRFHCPDGTEFSWK IMWINACFCNLNCKNPNDIFADLAHYHDYSEIAN" gene complement(<4580853..>4595761) /locus_tag="N303_07818" mRNA complement(join(<4580853..4581115,4581835..4581886, 4583177..4583212,4584769..4584816,4585573..4585624, 4586554..4586610,4586980..4587083,4588014..4588070, 4589520..4589606,4590064..4590124,4591713..4591775, 4593853..4593973,4595635..>4595761)) /locus_tag="N303_07818" /product="Protein NDRG1" CDS complement(join(<4580853..4581115,4581835..4581886, 4583177..4583212,4584769..4584816,4585573..4585624, 4586554..4586610,4586980..4587083,4588014..4588070, 4589520..4589606,4590064..4590124,4591713..4591775, 4593853..4593973,4595635..>4595761)) /locus_tag="N303_07818" /codon_start=1 /product="Protein NDRG1" /protein_id="KFO75518.1" /db_xref="InterPro:IPR004142" /db_xref="UniProtKB/Swiss-Prot:Q4R4Q3" /translation="IPPLHCQEQDVETVHGSVHVTMCGTPRGNRPAILTYHDIGLNHK TCFNPLFNFEDMQEITQHFAVCHVDAPGQQDGAPSFQAGYVYPSMDQLAEMLPGILKQ FGLKTIIGMGTGAGAYILTRFALNHPEMVEGLVLINVNPCAEGWMDWAATKISGWTNA LPDMVISHLFGKEEIHSNHDLIHTYRQHITNDMNQTNLHLFVNSYNSRRDLEIERPVP GINVVTLQCPVLLVVGDSSPAVDAVVECNSKLDPTRTTLLKMADCGGLPQVSQPAKLA EAFKYFVQGMGYIPSASMTRLMRSRTASGSSVTSLEGQRSRSHTGEGTRSRSHTGEGT RSRSHTGDGARNRSHTDTRIELTPNSASNAEQSSPKSMEVSC" assembly_gap 4582303..4582334 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4591161..4591263 /estimated_length=103 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4622559..4622603 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4687444..4687482 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4695398..4695425 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4702753..>4725896) /locus_tag="N303_07819" mRNA complement(join(<4702753..4702920,4704583..4704702, 4707155..4707200,4712311..4712490,4715850..4716046, 4725750..>4725896)) /locus_tag="N303_07819" /product="CMP-N-acetylneuraminate-beta-galactosamide- alpha-2, 3-sialyltransferase 1" CDS complement(join(<4702753..4702920,4704583..4704702, 4707155..4707200,4712311..4712490,4715850..4716046, 4725750..>4725896)) /locus_tag="N303_07819" /note="GO_component: GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO_function: GO:0008373 - sialyltransferase activity [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]" /codon_start=1 /product="CMP-N-acetylneuraminate-beta-galactosamide- alpha-2, 3-sialyltransferase 1" /protein_id="KFO75519.1" /db_xref="InterPro:IPR001675" /db_xref="UniProtKB/Swiss-Prot:Q11200" /translation="YPRRPCSCRTCISELGRSLWFDQRFNSTMQPFLTSQNAFIPEDS YRWWLKLQGEKTPKDINATLKELFEIIPGDGDPLQERGTYTCRRCAIVGNSGNLRQSQ YGQDIDSHDFVLRMNRAPTTGYESDVGSKTTHQFVYPESYKELAENVSMILIPFKTLD LRWVVTALTTGTINFTYVPVPRKIKVKKEKILVYNPAFMKYVYENWLQHHGRYPSTGL LSLIFALHVCDEVDVYGFGADSKGHWHHYWENNASAGAFRKTGVHDGDFEFNVTLTLA SIEKINFFKG" assembly_gap 4760929..4761775 /estimated_length=847 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4775564..>4775902 /locus_tag="N303_07820" mRNA <4775564..>4775902 /locus_tag="N303_07820" /product="hypothetical protein" CDS <4775564..>4775902 /locus_tag="N303_07820" /codon_start=1 /product="hypothetical protein" /protein_id="KFO75520.1" /translation="GKASLTVGEDQVCEHLRNLNVYKSLGPDEMYLRVLRELADVVAK PLSVIFEKSWHSGEVPGDWKKGNVPIFKKGRKDDPENYRPVSLTSVPGKIMEQILLEA MLKHMEGREVI" assembly_gap 4781465..4781901 /estimated_length=437 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4818238..4818250 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4900813..4900921 /estimated_length=109 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4911510..4911532 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4978581..4978691 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4981246..4981292 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5000749..5000771 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5013202..5013221 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5015687..5015745 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5036076..5036479 /estimated_length=404 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5038065..5046574 /estimated_length=8510 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5080700..5081491 /estimated_length=792 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5099887..5100120 /estimated_length=234 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(5132184..5133145) /locus_tag="N303_07821" /note="Guanine nucleotide-binding protein G(i) subunit alpha-2" /pseudo assembly_gap 5143143..5143172 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5201212..5201363 /estimated_length=152 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5204470..5204495 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5213348..5213451 /estimated_length=104 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5220681..5220746 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<5226146..>5309026) /locus_tag="N303_07822" mRNA complement(join(<5226146..5226382,5239151..5239281, 5242326..5242452,5244190..5244308,5253260..5253398, 5255231..5255319,5260228..5260401,5262546..5262695, 5266169..5266256,5273236..5273468,5274630..5276098, 5276379..5276529,5288873..5289046,5299117..5299377, 5308855..>5309026)) /locus_tag="N303_07822" /product="Zinc finger protein ZFAT" CDS complement(join(<5226146..5226382,5239151..5239281, 5242326..5242452,5244190..5244308,5253260..5253398, 5255231..5255319,5260228..5260401,5262546..5262695, 5266169..5266256,5273236..5273468,5274630..5276098, 5276379..5276529,5288873..5289046,5299117..5299377, 5308855..>5309026)) /locus_tag="N303_07822" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Zinc finger protein ZFAT" /protein_id="KFO75521.1" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR015880" /db_xref="UniProtKB/Swiss-Prot:Q9P243" /translation="GINSIFMCKLCNLFSPNQSELLSHVSEKHTEEGTNVDDIIIPLQ PLTVPTNINKDGEDLLVAKRKRGRPKGSTKKFCMDEDIAENNSVPSEEALPGTEEAPE PAEFSPGSLECGKCNRKFCNTRQLRKHICIIVSNEGEEEGDGGNDSDVDLDRKEDERE KTSKRPRVQKTEKTPSAKETEQVSGAKNPIISVVLTAHEAIPGATKIVPVEAAPQESE PTTPEATAQDPSQRRGYQEYAIQQTPYEQAMKSSRLGPTQLKIFTCEYCNKVFKFKHS LQAHLRIHTNEKPYKCSYCSYASAIKANLNVHMRKHTGEKFSCDYCPFTCLSKGHLKV HIERVHKKIKQHCRFCKKKYSDVKNLIKHIKETHDLQDKKVKDVFDELRLMTREGKRQ LLYDCHICERKFKNELDRDRHMLVHGDERPFACELCGHGATKYQALELHVRKHPFVYV CSVCLKKFVSSVRLRAHIKDVHADLQETSVFNSSINQSFCLLEPGGDIQPEALGEQLS QSADELTIISTNAVNTPEPSACKGDSTAVDVNHNGQYSDDLKIDAVPLLEFENPPVEN VTETLCQTTDIADPNIQSCVTSDCFLLKNGTSGSDELNVSPANGEEEVNHCSSMNEQG EESLLTEDKSLHPDQNDAVTEKLSVSEEKNQTAASSESETSHPPIQNLTETTNSLPAP EAANAAIGPQTASSNAVTLDGQSRTVAFMQILDSLQKRQMTTELCERIRKVYGDLECE YCGKLFWYQVHYDMHVRTHTREHLYYCSQCNYSSITKNCLKRHVIQKHSNILLKCPTE HCDYSTPDKYKLQAHLKVHTDLDKKSYSCPVCEKSFSEDRLIKSHIKTNHPEVSMNTI SEILGRRVQLKGLIGKRAVKCPYCDFYFMKNGSDLQRHIWAHEGVKPFKCSLCEYATR SKSNLKAHMNRHSTEKTHLCDMCGKKFKSKGTLKSHKLLHAADGKQFKCTVCDYTAAQ KPQLLRHMEQHVSFKPFRCAHCHYSCNISGSLKRHYNRKHPNEEYVNAGSGEPAAEAL VQQGGIKCPVCSFVYGTKWEFNRHLKNKHGMKLVEHDGETKWELTAEVSEEASTQYLH ITEAGEDVQGTQAAVAALQNLRYTSENGERLDPTAVNILQQIIELGSETHDATAVASV VTMAPGTVTVVKQVKEEEQSANHTLMIQETLQQASVELSEQHHLVVSSDEVEGIETVT VYTQGGEASEFIVYVQEAMQPVEEQTVEQSVQEL" assembly_gap 5228453..5228777 /estimated_length=325 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5233652..5233665 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5322305..5323344 /estimated_length=1040 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5342346..5342377 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5374500..5374808 /estimated_length=309 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<5380238..>5380378) /locus_tag="N303_07823" mRNA complement(<5380238..>5380378) /locus_tag="N303_07823" /product="hypothetical protein" CDS complement(<5380238..>5380378) /locus_tag="N303_07823" /codon_start=1 /product="hypothetical protein" /protein_id="KFO75522.1" /translation="FTVSMSRDPLSLFSLVAQLAFHGALWQLQPFWGAEFIPPLLFQP HIE" assembly_gap 5386284..5386550 /estimated_length=267 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5396288..5396370 /estimated_length=83 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5408760..5409775 /estimated_length=1016 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5410749..5410804 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5434598..5434615 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5437615..5437637 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5448382..5448436 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5454200..5454236 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5513629..5513670 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5527270..5527281 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5529802..5531990 /estimated_length=2189 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5550391..5550434 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5617018..5617046 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5673592..5673604 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5680840..5680881 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5697201..5697393 /estimated_length=193 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5703293..5703310 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5711443..>5802361 /locus_tag="N303_07824" mRNA join(<5711443..5711530,5735476..5735594,5748017..5748133, 5752383..5752529,5760179..5760318,5773113..5773305, 5780999..5781081,5799069..5799127,5802270..>5802361) /locus_tag="N303_07824" /product="KH domain-containing, RNA-binding, signal transduction-associated protein 3" CDS join(5711443..5711530,5735476..5735594,5748017..5748133, 5752383..5752529,5760179..5760318,5773113..5773305, 5780999..5781081,5799069..5799127,5802270..5802361) /locus_tag="N303_07824" /note="GO_function: GO:0003723 - RNA binding [Evidence IEA]" /codon_start=1 /product="KH domain-containing, RNA-binding, signal transduction-associated protein 3" /protein_id="KFO75523.1" /db_xref="InterPro:IPR004087" /db_xref="UniProtKB/Swiss-Prot:O75525" /translation="MDEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKEEEK YIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGS MRDKTKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYN DEIRQAQLQELTYLNGGSENAEVPVVRGKTSIRARGVPVPALSRGRGGVPPPPSGVPR GAPAPRGVPPSRGPVSRSRGLLAPRARGVPPPAGYRPLPPPPAQETYGEYEYDDGYGT AYDEQSYDSYDNSYSTQAQSGADYYDYGHGLNEETYDSYGQEEWTNSRHKAPSARTTK GVYRDQPYARY" assembly_gap 5734767..5734791 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5759803..5759858 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5762070..5762098 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5778506..5778540 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5810716..5810749 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5842550..5843364 /estimated_length=815 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5884872..5888336 /estimated_length=3465 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6010968..6011048 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6045904..6045961 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6093351..6093399 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6096085..6096123 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6119428..6119437 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6122174..6122225 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6124316..6124332 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6147707..6147743 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6191065..6191090 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6209682..6212216 /estimated_length=2535 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6219927..6219966 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6265909..6265969 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6382139..6382183 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6390532..6390542 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6402282..6402293 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6421824..6421855 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6446435..6446456 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6457997..6458048 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6464005..6464184 /estimated_length=180 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6464837..6464983 /estimated_length=147 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6472053..6472070 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6492061..6492110 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6494295..6494349 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(JNOX01027948.1:1..11364,gap(61),JNOX01027949.1:1..10948, gap(51),JNOX01027950.1:1..39336,gap(764),JNOX01027951.1:1..12673, gap(30),JNOX01027952.1:1..5054,gap(406),JNOX01027953.1:1..398, gap(173),JNOX01027954.1:1..11138,gap(14),JNOX01027955.1:1..67036, gap(57),JNOX01027956.1:1..16494,gap(89),JNOX01027957.1:1..10974, gap(843),JNOX01027958.1:1..5320,gap(19),JNOX01027959.1:1..52086, gap(388),JNOX01027960.1:1..13078,gap(11),JNOX01027961.1:1..23419, gap(30),JNOX01027962.1:1..585,gap(234),JNOX01027963.1:1..4185, gap(32),JNOX01027964.1:1..383,gap(47),JNOX01027965.1:1..33756, gap(373),JNOX01027966.1:1..1300,gap(193),JNOX01027967.1:1..19876, gap(10),JNOX01027968.1:1..14794,gap(38),JNOX01027969.1:1..919, gap(76),JNOX01027970.1:1..16826,gap(86),JNOX01027971.1:1..6306, gap(205),JNOX01027972.1:1..7521,gap(170),JNOX01027973.1:1..1582, gap(51),JNOX01027974.1:1..6589,gap(39),JNOX01027975.1:1..23037, gap(365),JNOX01027976.1:1..36537,gap(85),JNOX01027977.1:1..2820, gap(240),JNOX01027978.1:1..47444,gap(136),JNOX01027979.1:1..42783, gap(319),JNOX01027980.1:1..18355,gap(17),JNOX01027981.1:1..18772, gap(37),JNOX01027982.1:1..32924,gap(38),JNOX01027983.1:1..76305, gap(30),JNOX01027984.1:1..2798,gap(384),JNOX01027985.1:1..4024, gap(64),JNOX01027986.1:1..7762,gap(120),JNOX01027987.1:1..21683, gap(65),JNOX01027988.1:1..54595,gap(10),JNOX01027989.1:1..5914, gap(24),JNOX01027990.1:1..7895,gap(25),JNOX01027991.1:1..6826, gap(1296),JNOX01027992.1:1..22096,gap(149),JNOX01027993.1:1..477, gap(58),JNOX01027994.1:1..38999,gap(58),JNOX01027995.1:1..28948, gap(226),JNOX01027996.1:1..66284,gap(51),JNOX01027997.1:1..706, gap(97),JNOX01027998.1:1..7491,gap(11),JNOX01027999.1:1..55969, gap(13),JNOX01028000.1:1..11298,gap(43),JNOX01028001.1:1..5145, gap(13),JNOX01028002.1:1..91903,gap(66),JNOX01028003.1:1..53239, gap(87),JNOX01028004.1:1..15153,gap(20),JNOX01028005.1:1..40382, gap(326),JNOX01028006.1:1..26356,gap(683),JNOX01028007.1:1..3227, gap(177),JNOX01028008.1:1..20228,gap(52),JNOX01028009.1:1..80903, gap(32),JNOX01028010.1:1..1690,gap(30),JNOX01028011.1:1..5395, gap(41),JNOX01028012.1:1..8121,gap(18),JNOX01028013.1:1..13269, gap(771),JNOX01028014.1:1..12713,gap(15),JNOX01028015.1:1..123117, gap(48),JNOX01028016.1:1..38605,gap(350),JNOX01028017.1:1..21065, gap(25),JNOX01028018.1:1..29869,gap(5923),JNOX01028019.1:1..5861, gap(98),JNOX01028020.1:1..41719,gap(10),JNOX01028021.1:1..11311, gap(540),JNOX01028022.1:1..2502,gap(1050),JNOX01028023.1:1..9959, gap(370),JNOX01028024.1:1..2121,gap(51),JNOX01028025.1:1..36912, gap(2083),JNOX01028026.1:1..1471,gap(104),JNOX01028027.1:1..24800, gap(42),JNOX01028028.1:1..6965,gap(65),JNOX01028029.1:1..20403, gap(79),JNOX01028030.1:1..18712,gap(35),JNOX01028031.1:1..58134, gap(949),JNOX01028032.1:1..19854,gap(556),JNOX01028033.1:1..6527, gap(39),JNOX01028034.1:1..99762,gap(45),JNOX01028035.1:1..66712, gap(575),JNOX01028036.1:1..13771,gap(60),JNOX01028037.1:1..15992, gap(12),JNOX01028038.1:1..28650,gap(63),JNOX01028039.1:1..684, gap(985),JNOX01028040.1:1..19389,gap(453),JNOX01028041.1:1..28809, gap(286),JNOX01028042.1:1..769,gap(13),JNOX01028043.1:1..22970, gap(41),JNOX01028044.1:1..53182,gap(435),JNOX01028045.1:1..17753, gap(26),JNOX01028046.1:1..31734,gap(12),JNOX01028047.1:1..34547, gap(818),JNOX01028048.1:1..30380,gap(424),JNOX01028049.1:1..1891, gap(80),JNOX01028050.1:1..13472,gap(14),JNOX01028051.1:1..11116, gap(11),JNOX01028052.1:1..30874,gap(19),JNOX01028053.1:1..49607, gap(42),JNOX01028054.1:1..31189,gap(559),JNOX01028055.1:1..48365, gap(411),JNOX01028056.1:1..4279,gap(87),JNOX01028057.1:1..11784, gap(47),JNOX01028058.1:1..1472,gap(416),JNOX01028059.1:1..36452, gap(15),JNOX01028060.1:1..29999,gap(11),JNOX01028061.1:1..1434, gap(135),JNOX01028062.1:1..39134,gap(13),JNOX01028063.1:1..23340, gap(377),JNOX01028064.1:1..20588,gap(1125),JNOX01028065.1:1..23728, gap(12),JNOX01028066.1:1..21699,gap(52),JNOX01028067.1:1..6192, gap(265),JNOX01028068.1:1..28564,gap(15),JNOX01028069.1:1..19276, gap(46),JNOX01028070.1:1..23267,gap(142),JNOX01028071.1:1..30342, gap(49),JNOX01028072.1:1..9100,gap(321),JNOX01028073.1:1..20591, gap(80),JNOX01028074.1:1..11978,gap(399),JNOX01028075.1:1..19519, gap(40),JNOX01028076.1:1..4468,gap(655),JNOX01028077.1:1..33538, gap(229),JNOX01028078.1:1..12039,gap(285),JNOX01028079.1:1..11358, gap(397),JNOX01028080.1:1..67388,gap(40),JNOX01028081.1:1..29845, gap(167),JNOX01028082.1:1..38302,gap(453),JNOX01028083.1:1..27761, gap(135),JNOX01028084.1:1..85343,gap(40),JNOX01028085.1:1..26960, gap(20),JNOX01028086.1:1..24381,gap(54),JNOX01028087.1:1..17090, gap(103),JNOX01028088.1:1..37652,gap(116),JNOX01028089.1:1..42862, gap(46),JNOX01028090.1:1..42569,gap(43),JNOX01028091.1:1..16408, gap(36),JNOX01028092.1:1..327,gap(437),JNOX01028093.1:1..2257, gap(1447),JNOX01028094.1:1..68572,gap(87),JNOX01028095.1:1..18010, gap(26),JNOX01028096.1:1..26001,gap(1042),JNOX01028097.1:1..1325, gap(19),JNOX01028098.1:1..4337,gap(23),JNOX01028099.1:1..79145, gap(61),JNOX01028100.1:1..3363,gap(12),JNOX01028101.1:1..13758, gap(61),JNOX01028102.1:1..21470,gap(37),JNOX01028103.1:1..43393, gap(690),JNOX01028104.1:1..30963,gap(111),JNOX01028105.1:1..68018, gap(528),JNOX01028106.1:1..12893,gap(18),JNOX01028107.1:1..12385, gap(460),JNOX01028108.1:1..12326,gap(55),JNOX01028109.1:1..1237, gap(1111),JNOX01028110.1:1..29202,gap(11),JNOX01028111.1:1..31420, gap(10),JNOX01028112.1:1..8767,gap(20),JNOX01028113.1:1..17190, gap(18),JNOX01028114.1:1..37331,gap(13),JNOX01028115.1:1..1996, gap(1767),JNOX01028116.1:1..3684,gap(14),JNOX01028117.1:1..15652, gap(510),JNOX01028118.1:1..25052,gap(23),JNOX01028119.1:1..72470, gap(928),JNOX01028120.1:1..39607,gap(14),JNOX01028121.1:1..46726, gap(561),JNOX01028122.1:1..31093,gap(341),JNOX01028123.1:1..30051, gap(25),JNOX01028124.1:1..7271,gap(16),JNOX01028125.1:1..23252, gap(1568),JNOX01028126.1:1..50228,gap(92),JNOX01028127.1:1..4522, gap(46),JNOX01028128.1:1..84639,gap(21),JNOX01028129.1:1..39347, gap(38),JNOX01028130.1:1..69079,gap(32),JNOX01028131.1:1..8826, gap(103),JNOX01028132.1:1..31295,gap(45),JNOX01028133.1:1..64840, gap(39),JNOX01028134.1:1..7915,gap(28),JNOX01028135.1:1..65503, gap(847),JNOX01028136.1:1..19689,gap(437),JNOX01028137.1:1..36336, gap(13),JNOX01028138.1:1..82562,gap(109),JNOX01028139.1:1..10588, gap(23),JNOX01028140.1:1..67048,gap(111),JNOX01028141.1:1..2554, gap(47),JNOX01028142.1:1..19456,gap(23),JNOX01028143.1:1..12430, gap(20),JNOX01028144.1:1..2465,gap(59),JNOX01028145.1:1..20330, gap(404),JNOX01028146.1:1..1585,gap(8510),JNOX01028147.1:1..34125, gap(792),JNOX01028148.1:1..18395,gap(234),JNOX01028149.1:1..43022, gap(30),JNOX01028150.1:1..58039,gap(152),JNOX01028151.1:1..3106, gap(26),JNOX01028152.1:1..8852,gap(104),JNOX01028153.1:1..7229, gap(66),JNOX01028154.1:1..7706,gap(325),JNOX01028155.1:1..4874, gap(14),JNOX01028156.1:1..88639,gap(1040),JNOX01028157.1:1..19001, gap(32),JNOX01028158.1:1..32122,gap(309),JNOX01028159.1:1..11475, gap(267),JNOX01028160.1:1..9737,gap(83),JNOX01028161.1:1..12389, gap(1016),JNOX01028162.1:1..973,gap(56),JNOX01028163.1:1..23793, gap(18),JNOX01028164.1:1..2999,gap(23),JNOX01028165.1:1..10744, gap(55),JNOX01028166.1:1..5763,gap(37),JNOX01028167.1:1..59392, gap(42),JNOX01028168.1:1..13599,gap(12),JNOX01028169.1:1..2520, gap(2189),JNOX01028170.1:1..18400,gap(44),JNOX01028171.1:1..66583, gap(29),JNOX01028172.1:1..56545,gap(13),JNOX01028173.1:1..7235, gap(42),JNOX01028174.1:1..16319,gap(193),JNOX01028175.1:1..5899, gap(18),JNOX01028176.1:1..31456,gap(25),JNOX01028177.1:1..25011, gap(56),JNOX01028178.1:1..2211,gap(29),JNOX01028179.1:1..16407, gap(35),JNOX01028180.1:1..32175,gap(34),JNOX01028181.1:1..31800, gap(815),JNOX01028182.1:1..41507,gap(3465), JNOX01028183.1:1..122631,gap(81),JNOX01028184.1:1..34855,gap(58), JNOX01028185.1:1..47389,gap(49),JNOX01028186.1:1..2685,gap(39), JNOX01028187.1:1..23304,gap(10),JNOX01028188.1:1..2736,gap(52), JNOX01028189.1:1..2090,gap(17),JNOX01028190.1:1..23374,gap(37), JNOX01028191.1:1..43321,gap(26),JNOX01028192.1:1..18591,gap(2535), JNOX01028193.1:1..7710,gap(40),JNOX01028194.1:1..45942,gap(61), JNOX01028195.1:1..116169,gap(45),JNOX01028196.1:1..8348,gap(11), JNOX01028197.1:1..11739,gap(12),JNOX01028198.1:1..19530,gap(32), JNOX01028199.1:1..24579,gap(22),JNOX01028200.1:1..11540,gap(52), JNOX01028201.1:1..5956,gap(180),JNOX01028202.1:1..652,gap(147), JNOX01028203.1:1..7069,gap(18),JNOX01028204.1:1..19990,gap(50), JNOX01028205.1:1..2184,gap(55),JNOX01028206.1:1..427) //