LOCUS       KL216547             1526445 bp    DNA     linear   CON 05-SEP-2014
DEFINITION  Picoides pubescens isolate BGI_N307 unplaced genomic scaffold
            scaffold6, whole genome shotgun sequence.
ACCESSION   KL216547 JJRU01000000
VERSION     KL216547.1
DBLINK      BioProject: PRJNA212874
            BioSample: SAMN02314405
KEYWORDS    WGS.
SOURCE      Dryobates pubescens (Downy woodpecker)
  ORGANISM  Dryobates pubescens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Piciformes; Picidae; Dryobates.
REFERENCE   1  (bases 1 to 1526445)
  AUTHORS   Zhang,G. and Li,C.
  TITLE     Genome evolution of avian class
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1526445)
  AUTHORS   Zhang,G. and Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2014) China National Genebank, BGI, 2nd Office
            Building, Beishan Industrial Zone,Beishan Road, Yantian District,
            Shenzhen, Guangdong 518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.6
            Genome Coverage       :: 105x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526445
                     /organism="Dryobates pubescens"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold6"
                     /isolate="BGI_N307"
                     /db_xref="taxon:118200"
                     /chromosome="Unknown"
                     /sex="female"
                     /geo_loc_name="USA"
     assembly_gap    900..927
                     /estimated_length=28
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1478..2140
                     /estimated_length=663
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(21666..54897)
                     /locus_tag="N307_11709"
                     /note="Tubulointerstitial nephritis antigen; contains
                     frameshift"
     assembly_gap    83681..85346
                     /estimated_length=1666
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    90839..90856
                     /estimated_length=18
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<90858..>124636)
                     /locus_tag="N307_11710"
     mRNA            complement(join(<90858..90896,97043..97087,101140..101177,
                     102060..102096,102200..102298,102376..102441,
                     110734..110805,121890..122258,124478..>124636))
                     /locus_tag="N307_11710"
                     /product="Muscular LMNA-interacting protein"
     CDS             complement(join(<90858..90896,97043..97087,101140..101177,
                     102060..102096,102200..102298,102376..102441,
                     110734..110805,121890..122258,124478..>124636))
                     /locus_tag="N307_11710"
                     /codon_start=1
                     /product="Muscular LMNA-interacting protein"
                     /protein_id="KFV70115.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q5VWP3"
                     /translation="LASQESGTKPLTFTFVPSIGRLPTHFEVVDVSKYLVTIPEEPKD
                     LTNQEITNKSNTVSEELGLKSEARRDCVFAVHTGSTQTAFQSSQCNLSKGEMQENDLF
                     KAEFILITDSGDEDEVATALSNIHQPSNGYGPISAQLLPTSHISPGTSAGKPPGDGHI
                     PGATLSHSSADLRKHQQYKIKTSYKAFAAIPTNTLLMEQKALEEPAKTTSVTEGTNLD
                     THAEMCSPAQLRQQTEELCAVIDQVLQDPLTMVIHKYFPADEHRVRCWQTTLQRAAGR
                     ETRFANLNKSAPTVTESQLTKPGVIRPVLVKG"
     assembly_gap    124384..124432
                     /estimated_length=49
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    135143..135157
                     /estimated_length=15
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    136855..136868
                     /estimated_length=14
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    161005..161067
                     /estimated_length=63
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    164165..164210
                     /estimated_length=46
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    167082..167133
                     /estimated_length=52
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    191203..191249
                     /estimated_length=47
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<192696..>249409)
                     /locus_tag="N307_11711"
     mRNA            complement(join(<192696..192851,194664..194800,
                     196389..196561,197463..197578,207344..207427,
                     208389..208507,211247..211391,213108..213182,
                     213889..213952,215789..215845,230836..230925,
                     235095..235173,249289..>249409))
                     /locus_tag="N307_11711"
                     /product="Leucine-rich repeat-containing protein 1"
     CDS             complement(join(<192696..192851,194664..194800,
                     196389..196561,197463..197578,207344..207427,
                     208389..208507,211247..211391,213108..213182,
                     213889..213952,215789..215845,230836..230925,
                     235095..235173,249289..>249409))
                     /locus_tag="N307_11711"
                     /note="GO_function: GO:0005515 - protein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Leucine-rich repeat-containing protein 1"
                     /protein_id="KFV70116.1"
                     /db_xref="InterPro:IPR001611"
                     /db_xref="InterPro:IPR003591"
                     /db_xref="UniProtKB/Swiss-Prot:Q9BTT6"
                     /translation="QPFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDLSRNDIPE
                     IPESISFCRALQIADFSGNPLTRLPESFPELQNLTCLSVNDISLQALPENIGNLYNLA
                     SLELRENLLTYLPESLAQLQRLEELDLGNNELYHLPETIGALFNLKDLWLDGNQLAEI
                     PQEVGNLKNLLCLDVSENKLECLPEEISGLTSLTDLLVSQNLLQILPDGIGKLRRLSI
                     LKVDQNKLIQLTDSIGDCESLTELVLTENQLQSLPKTIGKLKKLNNLNADRNKLTSLP
                     KEIGGCCSLNVFSVRDNRLSRIPSEISQATELHVLDVAGNRLTYLPLSLTTLKLKALW
                     LSDNQSQPLLTFQTDTDPETGEKILTCVLLPQMPSEPGCQDNLPRCGALESLVNEMSD
                     ETWNERAVNRVSAIRFLEDEKDEDDNEMRTLLRRATPHPGELKNMKKTVENLRNDMNA
                     AKGLDSNKNEVNNAIDRVTTSV"
     assembly_gap    194250..194260
                     /estimated_length=11
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    265215..265965
                     /estimated_length=751
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    273574..273667
                     /estimated_length=94
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    284387..284439
                     /estimated_length=53
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<292917..>306078)
                     /locus_tag="N307_11712"
     mRNA            complement(join(<292917..292975,293101..293213,
                     295991..296114,296574..296754,297341..297438,
                     298768..298932,299756..299855,302585..303122,
                     303216..303344,304402..304514,306016..>306078))
                     /locus_tag="N307_11712"
                     /product="Transcription elongation factor B polypeptide 3"
     CDS             complement(join(<292917..292975,293101..293213,
                     295991..296114,296574..296754,297341..297438,
                     298768..298932,299756..299855,302585..303122,
                     303216..303344,304402..304514,306016..>306078))
                     /locus_tag="N307_11712"
                     /note="GO_component: GO:0005634 - nucleus [Evidence IEA];
                     GO_component: GO:0016021 - integral to membrane [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006351 - transcription, DNA-dependent
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of transcription,
                     DNA-dependent [Evidence IEA]"
                     /codon_start=1
                     /product="Transcription elongation factor B polypeptide 3"
                     /protein_id="KFV70117.1"
                     /db_xref="InterPro:IPR001810"
                     /db_xref="InterPro:IPR010684"
                     /db_xref="InterPro:IPR017923"
                     /db_xref="UniProtKB/Swiss-Prot:Q63187"
                     /translation="FQIIKTLKVLQDLDISLRVLVETGIGKTVNSFRKHATAGNIAKT
                     LVKQWKKLTASENQRGRKQNTEKDEAKSSVSEETKPSGKSKMSVLVSRSSNSAPISKN
                     GSDKQHTCSEKTHQSRAFESFQKSGSSGSDRAFQGSNPQAKKSDFKEKGSKKVSAKQC
                     SSVVKDFSLLKEKPSKGVSKQINPKHLKKPKQNLVIKRKAELSSDEEFEPPTMSFESY
                     LNYDQVPAKRKKKACSTGRQPKKCNKQKSSSLLQKASAFSHANKGEKDVKTSEGDQSE
                     TPNKKAKMASLQDLLNTPLPKFLTGISISSPPYAADFEKPVEEAPEKVREAVQFTGQR
                     LNSKMQVYSGPKTVHLSKMLTLYEQCIRVLQNNIDSLHEVGGVPFEILEPVLTRCTPE
                     QLFRIEECNPTFAEESDLLWKKHCQRDFKNESLLECESWREMYSRLFNRREEKLKTLT
                     KNIISAQSEKLKGRQVIMAYVTSAAKPPRNIRRQQETHRTAGPVTQLHPREKSKRISE
                     SRDVTNTSAPIAGSNCGSSSSSMMTQDEKKPMKKVGPIMKKTLKALKSKAGRR"
     assembly_gap    303583..303641
                     /estimated_length=59
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <319432..>323142
                     /locus_tag="N307_11713"
     mRNA            join(<319432..319837,319893..320658,322410..>323142)
                     /locus_tag="N307_11713"
                     /product="Kelch-like 31"
     CDS             join(319432..319837,319893..320658,322410..323142)
                     /locus_tag="N307_11713"
                     /note="GO_function: GO:0005515 - protein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Kelch-like 31"
                     /protein_id="KFV70118.1"
                     /db_xref="InterPro:IPR000210"
                     /db_xref="InterPro:IPR006652"
                     /db_xref="InterPro:IPR011333"
                     /db_xref="InterPro:IPR011705"
                     /db_xref="InterPro:IPR013069"
                     /db_xref="UniProtKB/Swiss-Prot:Q9H511"
                     /translation="MAPKKKNVKKNKADINEMTIIVEDGPLSKLNGLNGLLDGGNGFS
                     CISSEVSDPLYSPNLLEGLSRMRQENFLCDLTISTKTKSFSVHKVVMASSSDYFHNIL
                     KKDPSTQRVDLNDVSPLGLATVITYAYTGKLTLSLYTIGSIISTAIYLQIHTLVKMCC
                     DFLIQEISVENCMYIANIAETYGLRTTKDAAHKFIRDNFIEFSETDQFLKLTFDQINE
                     LLADDELQLPSEIVAFQTAIKWLEFDQKRVKFAADLLGNIRFGTISAQDLVNYVQTVP
                     RMMQDADCHKLLVDAMNYHLLPYHQNTLQSRRTRIRGGFRVLVTVGGRPALAEKSLSR
                     DILYRDPENGWKKMTEMPAKSFNQCVTVMDGFLYVAGGEDQNDARNQAKHAVSNFCRY
                     DPRFNTWIHLANMNQRRTHFSLNVFNGLLFAVGGRNSEGCLSSIECYVPATNQWQMKA
                     PLEVPRCCHASAVVDGCILVTGGYINNAYSRSVCMYDPSKDSWQDKSSLSTPRGWHCA
                     VSLLERVYVMGGSQLGGRAERVDVLPVECYSPYTGQWSYVAPLQTGVSTAGASILNGK
                     VYLVGGWNEIEKKYKKCIQCYNPDLNEWTEEDELPEATVGVSCCTISMPSTKTRESRA
                     SSVSSVPVSI"
     assembly_gap    319839..319887
                     /estimated_length=49
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    332284..332321
                     /estimated_length=38
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    353400..353541
                     /estimated_length=142
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <353816..>386158
                     /locus_tag="N307_11714"
     mRNA            join(<353816..353965,368026..368138,369511..369693,
                     372015..372128,372884..372942,373031..373167,
                     375303..375377,376607..376723,377563..377701,
                     378208..378320,378991..379083,379793..379897,
                     382000..382081,382178..382281,382384..382504,
                     385959..>386158)
                     /locus_tag="N307_11714"
                     /product="Glutamate--cysteine ligase catalytic subunit"
     CDS             join(353816..353965,368026..368138,369511..369693,
                     372015..372128,372884..372942,373031..373167,
                     375303..375377,376607..376723,377563..377701,
                     378208..378320,378991..379083,379793..379897,
                     382000..382081,382178..382281,382384..382504,
                     385959..>386158)
                     /locus_tag="N307_11714"
                     /note="GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /product="Glutamate--cysteine ligase catalytic subunit"
                     /protein_id="KFV70119.1"
                     /db_xref="InterPro:IPR004308"
                     /db_xref="UniProtKB/Swiss-Prot:P48506"
                     /translation="MGLLSQGSPLSWEETRRYAEHVRKHGILQFLHIYRALRDRHKDV
                     LKWGDEVEYMLVKFDHENKKVRLVLCGEEVLQTLQDKGEKVNPNHPTLWRPEYGSYMI
                     EGTPGQPYGGTMSEFNTVQDNMRKRRQEAASVLKENEAVCTVTSFPRLGCPGFTLPEY
                     KPTPVEGGASKSLFFPDEAINKHPRFSTLTRNIRHRRGEKVVINVPIFKDKNTPSPFM
                     ETFPNDDGEAAKAAKPDYIYMDAMGFGMGNCCLQVTFQACSISEARYLYDQLATICPI
                     VMALSAASPFYRGYVSDIDCRWGVISASVDDRTREERGLEPLKNNHYRISKSRYDSID
                     SYLSECGEKYNDIDLTIDKDIYEHLIKEGIDHLLAQHIAHLFIRDPLTLFEEKIHLDD
                     ANESDHFENIQSTNWQTMRFKPPPPNSDIGWRVEFRPMEVQLTDFENSAYVVFVVLLT
                     RVILSYKLDFLIPLSKVDENMKVAQKRDAVRQGMFYFRKDICKGGNAVVDGCGSAQNG
                     TGTNMEEYTLMSIDTIINGKEGVFPGLIPILNSYLENMEVDVDTRCTILNYLRLIKKR
                     ASGELMTVARWMREFIAQHPDYKQDSVITDEMNYSLIWKCNQIAQGHAECPELLGVGF
                     NKKQSGNKTGS"
     assembly_gap    394744..394992
                     /estimated_length=249
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    403599..403611
                     /estimated_length=13
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    410166..410205
                     /estimated_length=40
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    418127..418615
                     /estimated_length=489
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    424748..424757
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <439148..>453197
                     /locus_tag="N307_11715"
     mRNA            join(<439148..439205,440766..440953,447215..447292,
                     447910..448081,449561..449685,451496..451630,
                     453066..>453197)
                     /locus_tag="N307_11715"
                     /product="Elongation of very long chain fatty acids
                     protein 5"
     CDS             join(439148..439205,440766..440953,447215..447292,
                     447910..448081,449561..449685,451496..451630,
                     453066..453197)
                     /locus_tag="N307_11715"
                     /note="GO_component: GO:0016021 - integral to membrane
                     [Evidence IEA]"
                     /codon_start=1
                     /product="Elongation of very long chain fatty acids
                     protein 5"
                     /protein_id="KFV70120.1"
                     /db_xref="InterPro:IPR002076"
                     /db_xref="UniProtKB/Swiss-Prot:Q32NI8"
                     /translation="MELLDKTINSYFDIWLGPRDPRVKGWLLLENYTPTFIFSVLYLL
                     IVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYMFHELVTGVWEGGYNFFCQDTHSG
                     GEADMKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQITVLHVYHHATMLNIWWFVMNW
                     VPCGHSYFGATLNSFIHVLMYSYYGLSAVPAMRPYLWWKKYITQGQLIQFVLTIFQTS
                     CGVVWPCAFPQGWLYFQISYMISLIILFTNFYIQTYNKKASSRRKEYQNGSTATVNGY
                     TNSFSSLENNVKQRKQRKD"
     gene            <475060..>482516
                     /locus_tag="N307_11716"
     mRNA            join(<475060..475149,476928..477180,478490..478602,
                     479543..479687,481924..>482516)
                     /locus_tag="N307_11716"
                     /product="Chorion-specific transcription factor GCMa"
     CDS             join(475060..475149,476928..477180,478490..478602,
                     479543..479687,481924..482516)
                     /locus_tag="N307_11716"
                     /note="GO_function: GO:0003677 - DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of transcription,
                     DNA-dependent [Evidence IEA]"
                     /codon_start=1
                     /product="Chorion-specific transcription factor GCMa"
                     /protein_id="KFV70121.1"
                     /db_xref="InterPro:IPR003902"
                     /db_xref="UniProtKB/Swiss-Prot:Q9Z288"
                     /translation="MLKSADNVMEQEDLAGEITSWDINDIKLPQDVRQIDWFQEWPDS
                     YVKHIYSSEDKNAQRHHSSWAMRNTNNHNSRILKKSCLGVVVCGNDCSTLDGRKIYLR
                     PAICDKARQKQQRKCCPNCNGPLRLLSCRGHGGYPVTNFWRHEGQFIFFQSKGAHDHP
                     RPETKREAEARRSIQKAQRASSPSSPRYKRTQETEVTVIIGAMPTQEALPWLFSKPDP
                     YLLPANFGGHLSKNLQEQMLGNCSEQPPYLRAAGEDDCSREVPAWNRSPALGRTLSTG
                     RSWSSPAINAPCTAPSAQHCAYPSTQHIVPTTKGGHGPFRPNAGPLRAEPCEGKSPLA
                     YSSSCIPLPPYPQGGSCPMKDGAQHQCQLSLPRGSQGERDEGRHSVGLNCCNDDMFFN
                     LYPLR"
     assembly_gap    475959..475969
                     /estimated_length=11
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<499023..>514319)
                     /locus_tag="N307_11717"
     mRNA            complement(join(<499023..499128,500793..500947,
                     501623..501716,502441..502536,503556..503646,
                     503941..504059,504903..505017,507713..507843,
                     509452..509551,512307..512364,512762..512920,
                     514242..>514319))
                     /locus_tag="N307_11717"
                     /product="F-box only protein 9"
     CDS             complement(join(<499023..499128,500793..500947,
                     501623..501716,502441..502536,503556..503646,
                     503941..504059,504903..505017,507713..507843,
                     509452..509551,512307..512364,512762..512920,
                     514242..>514319))
                     /locus_tag="N307_11717"
                     /note="GO_function: GO:0005515 - protein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /product="F-box only protein 9"
                     /protein_id="KFV70122.1"
                     /db_xref="InterPro:IPR001810"
                     /db_xref="UniProtKB/Swiss-Prot:Q9UK97"
                     /translation="AEAEEDCHSDLVRTDDNERSSEANLQAELQMFRAQWMFELAPGV
                     SSSGLEPLPCRASSRGPGVKSTDSRGKQEIATEEKAKELFLKAVEEEQNGALYEAIKF
                     YRLAMQLVPDIEFKITYTRSPDGDGVAKRCVEDNKEDGKMADLLSDFQQQLTLQESSV
                     KLCQPEVDVSQTHISALPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEI
                     WRQVCLKIWGRSCNKLVPYASWREMFLERPRVRFDGVYVSKTKYIRQGEQSLDGFYRA
                     WHQVEYYRYLRFFPDGQVMMLTTPEDPQSIVPRLRTKNTRTDAILLGHYRLSQETDNQ
                     TKVFAVIMKKKDEKPIDYHKYRYFRRVPAQETDHSFHVGLQLCSSGRQRFNKLVWIHH
                     SCHVTYRSTGETAVTAFDIDKMYTPLFFARVKSFTAFSEKPL"
     assembly_gap    518254..518292
                     /estimated_length=39
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    520871..521001
                     /estimated_length=131
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <523728..>541365
                     /locus_tag="N307_11718"
     mRNA            join(<523728..523828,526180..526234,528291..528412,
                     530658..530737,531255..531387,531831..532002,
                     532535..532702,535385..535681,536872..537062,
                     537692..537843,539222..539317,540629..540793,
                     541211..>541365)
                     /locus_tag="N307_11718"
                     /product="Serine/threonine-protein kinase ICK"
     CDS             join(523728..523828,526180..526234,528291..528412,
                     530658..530737,531255..531387,531831..532002,
                     532535..532702,535385..535681,536872..537062,
                     537692..537843,539222..539317,540629..540793,
                     541211..541365)
                     /locus_tag="N307_11718"
                     /note="GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Serine/threonine-protein kinase ICK"
                     /protein_id="KFV70123.1"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR002290"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="InterPro:IPR020635"
                     /db_xref="UniProtKB/Swiss-Prot:Q9UPZ9"
                     /translation="MNRYTTIRQLGDGTYGSVLLGRSIESGELIAIKKMKRKFYSWEE
                     CMNLREVKSLKKLNHANVVKLKEVIRENDHLYFVFEYMKENLYQLMKERNKLFPESTV
                     RNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVKIADFGLAREIRSRPPYTDYV
                     STRWYRAPEVLLRSTSYSSPIDIWAVGCIMAEVYTLRPLFPGASEIDTIFKICQVLGT
                     PKKNDWPEGYQLSASMNFHWPQCVPNNLKTLIPNASSEAVQLMRDMLQWDPKKRPTAS
                     QALRYPYFQVGHALGIQELGKQKELHNKSSSHIKPVPPAQPPPKPHARISSRPFQQSQ
                     PSQHLVYLHKTDNSGVEHSNYLQEDKSKQVLLPAIHNKIPQQKTSAGTENINGELKPK
                     TRRRWGHLARTAKNSEDWNDVDDLDFNSSVTRVDLKNKKRQSDETLCRFESILDLRPL
                     DAIGSGNSAPSHAPFPRQDTPTLRVSAAKQHYLRHSRYLPGLSTRNSTVPASNKESVP
                     SNSWPSSGLPGKASVRETHCVELKCSLLFLSGPIGSSNLTGGYIPSFLKKEVGSAGQR
                     VQLAPVVDPSSNYASLKSVRPHLGQPSFSSPTKSTPRLMSFPPPAQPVHGRVDWSAKY
                     GAHR"
     assembly_gap    547703..547753
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <548509..>555988
                     /locus_tag="N307_11719"
     mRNA            join(<548509..548595,550400..550451,551624..551756,
                     553795..553936,555047..555178,555845..>555988)
                     /locus_tag="N307_11719"
                     /product="Glutathione S-transferase 3"
     CDS             join(548509..548595,550400..550451,551624..551756,
                     553795..553936,555047..555178,555845..555988)
                     /locus_tag="N307_11719"
                     /note="GO_function: GO:0004364 - glutathione transferase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /product="Glutathione S-transferase 3"
                     /protein_id="KFV70124.1"
                     /db_xref="InterPro:IPR003080"
                     /db_xref="InterPro:IPR004045"
                     /db_xref="InterPro:IPR004046"
                     /db_xref="InterPro:IPR010987"
                     /db_xref="InterPro:IPR012336"
                     /db_xref="InterPro:IPR017933"
                     /db_xref="UniProtKB/Swiss-Prot:P26697"
                     /translation="MAGKPKLYYFNGRGRMESIRWLLAAAGVEFEEVFLETREQYEKL
                     LQGGSLMFQQVPMVEIDGMKMVQTKAILSYIAAKYNLYGKDLKERALIDMYVGGTDDL
                     MMLILVFPFLSAEDKEKQLAVIVQRATSRYFPVYEKVLKDHGQNFLVGNNFSWADIHL
                     LEAILMVEEKKSDVLSGFPQLQAFKKRISSIPTIKKFLEPGSQRKPVPDDKYVETVRR
                     VLRMYYDIKAN"
     assembly_gap    557356..557423
                     /estimated_length=68
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    562117..562148
                     /estimated_length=32
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <564177..>571809
                     /locus_tag="N307_11720"
     mRNA            join(<564177..564263,565390..565441,568279..568411,
                     568765..568906,569940..570071,571690..>571809)
                     /locus_tag="N307_11720"
                     /product="Glutathione S-transferase 3"
     CDS             join(564177..564263,565390..565441,568279..568411,
                     568765..568906,569940..570071,571690..571809)
                     /locus_tag="N307_11720"
                     /note="GO_function: GO:0004364 - glutathione transferase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /product="Glutathione S-transferase 3"
                     /protein_id="KFV70125.1"
                     /db_xref="InterPro:IPR003080"
                     /db_xref="InterPro:IPR004045"
                     /db_xref="InterPro:IPR004046"
                     /db_xref="InterPro:IPR010987"
                     /db_xref="InterPro:IPR012336"
                     /db_xref="InterPro:IPR017933"
                     /db_xref="UniProtKB/Swiss-Prot:P26697"
                     /translation="MSGKPRLTYLNGRGRMEPVRWLLAAAGVEFEENFLETREQYQKL
                     IQDGVLMFQQVPLVEIDGMKMVQTRAILSYIAGKYNLYGKDLKERALIDMYVEGIADL
                     MQMILMFPFSPPEAKDKNLDSIKERATTRYFPVFEKVLKQHGQDFLVGNKFSWADVQL
                     LEAILAVEEKVPAVLSGFPQLQAFKIKMSNMPTIKKFLQPGSPKKPPPDDCYVEKVFK
                     IFK"
     assembly_gap    574374..574487
                     /estimated_length=114
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <577179..>582463
                     /locus_tag="N307_11721"
     mRNA            join(<577179..577265,578301..578352,580002..580134,
                     580959..581100,581888..582019,582344..>582463)
                     /locus_tag="N307_11721"
                     /product="Glutathione S-transferase"
     CDS             join(577179..577265,578301..578352,580002..580134,
                     580959..581100,581888..582019,582344..582463)
                     /locus_tag="N307_11721"
                     /note="GO_function: GO:0004364 - glutathione transferase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /product="Glutathione S-transferase"
                     /protein_id="KFV70126.1"
                     /db_xref="InterPro:IPR003080"
                     /db_xref="InterPro:IPR004045"
                     /db_xref="InterPro:IPR004046"
                     /db_xref="InterPro:IPR010987"
                     /db_xref="InterPro:IPR012336"
                     /db_xref="InterPro:IPR017933"
                     /db_xref="UniProtKB/Swiss-Prot:Q08392"
                     /translation="MSGKPKLHYFNGRGRMEPIRWLLAAAGVEFEECFIEKKDDLLKL
                     RKDGSLLFQQVPMVEIDGMKLAQTRAILNYIAGKYNLYGKDLKERALIDMYAEGMMDL
                     NELLMSYPFQPADKKEQHLANALDKTTNRYFPVFEKVLKDHGQDFLVGNQFSKADVQL
                     LEILLMAEEYKPDILAKFPLLQKFKARVSNIPTIKKFLQPGSQRKPLPEEKDVQNAWK
                     IFH"
     assembly_gap    583948..584300
                     /estimated_length=353
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <586844..>592637
                     /locus_tag="N307_11722"
     mRNA            join(<586844..586930,587985..588036,588274..588406,
                     589468..589609,592054..592185,592515..>592637)
                     /locus_tag="N307_11722"
                     /product="Glutathione S-transferase"
     CDS             join(586844..586930,587985..588036,588274..588406,
                     589468..589609,592054..592185,592515..592637)
                     /locus_tag="N307_11722"
                     /note="GO_function: GO:0004364 - glutathione transferase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /product="Glutathione S-transferase"
                     /protein_id="KFV70127.1"
                     /db_xref="InterPro:IPR003080"
                     /db_xref="InterPro:IPR004045"
                     /db_xref="InterPro:IPR004046"
                     /db_xref="InterPro:IPR010987"
                     /db_xref="InterPro:IPR012336"
                     /db_xref="InterPro:IPR017933"
                     /db_xref="UniProtKB/Swiss-Prot:Q08393"
                     /translation="MSGKPKLHYTKGRGKMESIRWLLAAAGVEFEEEFIETKDDLEKL
                     RNDGVLMFQQVPMVEIDGMKMVQTRAILSYIAAKYNLYGKDLKERAWIDMYVEGTTDL
                     MGMIMFHPFQPAEAKEKNLALIIERATTRYFPVYEKALKDHGQDYLVGNKLSWADVHL
                     LEAILMAEECKPDILSAFPLLQAFKGRTSNIPTIKKFLQPGSQRKPQTDEKFVALVRK
                     IFNF"
     gene            complement(<594863..>599154)
                     /locus_tag="N307_11723"
     mRNA            complement(join(<594863..594899,595891..595978,
                     599052..>599154))
                     /locus_tag="N307_11723"
                     /product="Transmembrane protein 14A"
     CDS             complement(join(<594863..594899,595891..595978,
                     599052..>599154))
                     /locus_tag="N307_11723"
                     /note="GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /product="Transmembrane protein 14A"
                     /protein_id="KFV70128.1"
                     /db_xref="InterPro:IPR005349"
                     /db_xref="UniProtKB/Swiss-Prot:P56982"
                     /translation="GSKISLVAGLTFGSVAGYGAYCVTRDPRNVKISLFLSFLLTIIM
                     GMRFKRSKKLMPAGIVACLSLLMILRLVFMLL"
     assembly_gap    602426..602691
                     /estimated_length=266
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    633739..633760
                     /estimated_length=22
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    635885..635953
                     /estimated_length=69
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<640354..>694929)
                     /locus_tag="N307_11724"
     mRNA            complement(join(<640354..640576,642929..643052,
                     657008..657169,665429..665519,674672..674761,
                     679616..679731,679919..679988,694873..>694929))
                     /locus_tag="N307_11724"
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     epsilon"
     CDS             complement(join(<640354..640576,642929..643052,
                     657008..657169,665429..665519,674672..674761,
                     679616..679731,679919..679988,694873..>694929))
                     /locus_tag="N307_11724"
                     /note="GO_function: GO:0016746 - transferase activity,
                     transferring acyl groups [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     epsilon"
                     /protein_id="KFV70129.1"
                     /db_xref="InterPro:IPR002123"
                     /db_xref="UniProtKB/Swiss-Prot:Q9NUQ2"
                     /translation="YTICQSMVLFFFENYTGVEVIIYGDLPKNKENVVYLSNHQCTVD
                     WIIADMLAIRQNALGHVRYVLKDGLKWLPLYGWYFSQHGGVYVKRSAKFNEKEMREKL
                     RTQVKAETPMYLVIFPEGTRYNPEIPKVIADSQSFAEKEGLAVLKHVLTPRVKATHVA
                     IDTMKDYLDAVYDVTVAYEGTVDHKGQRKLAPSMTEFLCKECPRVHIFIDRIELKNIP
                     EEQIYMRRWLHERFEIKDKLLIEFYDAKDSKRRNKFPGKSVHSKLSLKKTLPSLLFLG
                     GLTASMLLTESGRKLYVKTWIYGTLIGCLWVSIKP"
     assembly_gap    653048..653106
                     /estimated_length=59
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    688569..688746
                     /estimated_length=178
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    690567..690598
                     /estimated_length=32
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    694930..695468
                     /estimated_length=539
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    755862..755917
                     /estimated_length=56
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <757477..>796322
                     /locus_tag="N307_11725"
     mRNA            join(<757477..757506,776600..776755,778649..778770,
                     780880..781112,783337..783464,791073..791174,
                     791659..791825,794707..794837,796162..>796322)
                     /locus_tag="N307_11725"
                     /product="Angiopoietin-2"
     CDS             join(757477..757506,776600..776755,778649..778770,
                     780880..781112,783337..783464,791073..791174,
                     791659..791825,794707..794837,796162..796322)
                     /locus_tag="N307_11725"
                     /note="GO_function: GO:0005102 - receptor binding
                     [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Angiopoietin-2"
                     /protein_id="KFV70130.1"
                     /db_xref="InterPro:IPR002181"
                     /db_xref="UniProtKB/Swiss-Prot:Q9BDY7"
                     /translation="MENNTQWLMKLENYIQDSMKKEMVEIQQTAVQNQTAVMIEIGTN
                     LLNQTAEQTRKLTDVEAQVLNQTTRLELQLLEHSLSTNKLERQISDQTNEITKLQEKN
                     SFLEKRVLEMEDKHTLQLKSIKDEKDQLQVLVARQNSIIEELEKQLVTATVNNSVLQK
                     QQHDLMETVHNLLTMISTPNSKHNFIAKEEQISFKDCAEAFKSGLTTSGIYTLTVSNT
                     VQEKKAYCDMETGGGGWTVIQKREDGSVDFHRTWKEYKMGFGDPAGEYWLGNEFVSQL
                     TNQKRYVLKIHLKDWEGNEAYSMYDHFSLATEELKYRIYLKGLTGTAGKISSISQPGN
                     DFSTKDADNDKCICKCSQMLTGGWWFDACGPSNLNGMYYPLRQNNNKFNGIKWYYWKG
                     SGYSLKATTMMIRPADF"
     gene            complement(<800839..>833447)
                     /locus_tag="N307_11726"
     mRNA            complement(join(<800839..800931,805755..805917,
                     810341..810383,823455..823757,825730..825843,
                     826848..826988,827287..827407,827949..828033,
                     831150..831268,833358..>833447))
                     /locus_tag="N307_11726"
                     /product="Microcephalin"
     CDS             complement(join(<800839..800931,805755..805917,
                     810341..810383,823455..823757,825730..825843,
                     826848..826988,827287..827407,827949..828033,
                     831150..831268,833358..>833447))
                     /locus_tag="N307_11726"
                     /note="GO_component: GO:0005622 - intracellular [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Microcephalin"
                     /protein_id="KFV70131.1"
                     /db_xref="InterPro:IPR001357"
                     /db_xref="UniProtKB/Swiss-Prot:P61594"
                     /translation="VSAFVDVWSSNRRENYSKPFEQQLLDMGAKVSKGLNKHVTHVVF
                     KDGHLAKWRKAQKMGVKIVSVLWVEKCRQTGLHVDESLFPAIAVNEEFPLLMKKHRCM
                     QPKDFVEKTPENSRRMRRRLDQLAKELAEQKRAISAETDVPVLLFEDDGSLVYRPVNR
                     VKGLGTEMESRIKEMKEKGENLSPTVSCSHSSSQMFQIPSSSTPGACPLSNSGLTNSE
                     DALLLGEQMDDRMNSSCDYTWETDKRQETEAVKHTSDALTDVQVSMSASVSSPSCSYG
                     QKSLTPKQHGRGSVKKWISQHTLDDKLSFEKEDLKKLTKENHKDENSMIMVHTVNLQS
                     VSLQRNQNIVIQAVNKLGNFLFSEDVCETPSHVVAGSPHHILNVLLGIAHGCCIVSFE
                     RNSTYHLMSLELDHRISEEPYELSFGFPAAPV"
     assembly_gap    801536..801589
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    812644..812737
                     /estimated_length=94
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    834781..835230
                     /estimated_length=450
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    847565..847576
                     /estimated_length=12
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    931410..931532
                     /estimated_length=123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    957126..957137
                     /estimated_length=12
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    966007..966455
                     /estimated_length=449
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    973333..973349
                     /estimated_length=17
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    990159..990268
                     /estimated_length=110
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    992721..992759
                     /estimated_length=39
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1005884..1007238
                     /estimated_length=1355
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1050123..1050173
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1171088..1171141
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1220440..1220496
                     /estimated_length=57
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1234005..1234533
                     /estimated_length=529
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1252563..1252583
                     /estimated_length=21
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1296254..1297330
                     /estimated_length=1077
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1299989..1300039
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1301201..1301569
                     /estimated_length=369
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1303152..1303805
                     /estimated_length=654
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1314598..1315046
                     /estimated_length=449
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1319083..1319437
                     /estimated_length=355
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1351168..1351275
                     /estimated_length=108
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1372026..1373131
                     /estimated_length=1106
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1388956..1389004
                     /estimated_length=49
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1398812..1399190
                     /estimated_length=379
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1424827..1424931
                     /estimated_length=105
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1457851..1457872
                     /estimated_length=22
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1506799..1506821
                     /estimated_length=23
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1514837..1514949
                     /estimated_length=113
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1518968..1519012
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(JJRU01068241.1:1..899,gap(28),JJRU01068242.1:1..550,gap(663),
            JJRU01068243.1:1..81540,gap(1666),JJRU01068244.1:1..5492,gap(18),
            JJRU01068245.1:1..33527,gap(49),JJRU01068246.1:1..10710,gap(15),
            JJRU01068247.1:1..1697,gap(14),JJRU01068248.1:1..24136,gap(63),
            JJRU01068249.1:1..3097,gap(46),JJRU01068250.1:1..2871,gap(52),
            JJRU01068251.1:1..24069,gap(47),JJRU01068252.1:1..3000,gap(11),
            JJRU01068253.1:1..70954,gap(751),JJRU01068254.1:1..7608,gap(94),
            JJRU01068255.1:1..10719,gap(53),JJRU01068256.1:1..19143,gap(59),
            JJRU01068257.1:1..16197,gap(49),JJRU01068258.1:1..12396,gap(38),
            JJRU01068259.1:1..21078,gap(142),JJRU01068260.1:1..41202,gap(249),
            JJRU01068261.1:1..8606,gap(13),JJRU01068262.1:1..6554,gap(40),
            JJRU01068263.1:1..7921,gap(489),JJRU01068264.1:1..6132,gap(10),
            JJRU01068265.1:1..51201,gap(11),JJRU01068266.1:1..42284,gap(39),
            JJRU01068267.1:1..2578,gap(131),JJRU01068268.1:1..26701,gap(51),
            JJRU01068269.1:1..9602,gap(68),JJRU01068270.1:1..4693,gap(32),
            JJRU01068271.1:1..12225,gap(114),JJRU01068272.1:1..9460,gap(353),
            JJRU01068273.1:1..18125,gap(266),JJRU01068274.1:1..31047,gap(22),
            JJRU01068275.1:1..2124,gap(69),JJRU01068276.1:1..17094,gap(59),
            JJRU01068277.1:1..35462,gap(178),JJRU01068278.1:1..1820,gap(32),
            JJRU01068279.1:1..4331,gap(539),JJRU01068280.1:1..60393,gap(56),
            JJRU01068281.1:1..45618,gap(54),JJRU01068282.1:1..11054,gap(94),
            JJRU01068283.1:1..22043,gap(450),JJRU01068284.1:1..12334,gap(12),
            JJRU01068285.1:1..83833,gap(123),JJRU01068286.1:1..25593,gap(12),
            JJRU01068287.1:1..8869,gap(449),JJRU01068288.1:1..6877,gap(17),
            JJRU01068289.1:1..16809,gap(110),JJRU01068290.1:1..2452,gap(39),
            JJRU01068291.1:1..13124,gap(1355),JJRU01068292.1:1..42884,gap(51),
            JJRU01068293.1:1..120914,gap(54),JJRU01068294.1:1..49298,gap(57),
            JJRU01068295.1:1..13508,gap(529),JJRU01068296.1:1..18029,gap(21),
            JJRU01068297.1:1..43670,gap(1077),JJRU01068298.1:1..2658,gap(51),
            JJRU01068299.1:1..1161,gap(369),JJRU01068300.1:1..1582,gap(654),
            JJRU01068301.1:1..10792,gap(449),JJRU01068302.1:1..4036,gap(355),
            JJRU01068303.1:1..31730,gap(108),JJRU01068304.1:1..20750,gap(1106),
            JJRU01068305.1:1..15824,gap(49),JJRU01068306.1:1..9807,gap(379),
            JJRU01068307.1:1..25636,gap(105),JJRU01068308.1:1..32919,gap(22),
            JJRU01068309.1:1..48926,gap(23),JJRU01068310.1:1..8015,gap(113),
            JJRU01068311.1:1..4018,gap(45),JJRU01068312.1:1..7433)
//