LOCUS       KK852703              560840 bp    DNA     linear   CON 05-JUN-2014
DEFINITION  Zootermopsis nevadensis unplaced genomic scaffold scaffold352,
            whole genome shotgun sequence.
ACCESSION   KK852703 AUST01000000
VERSION     KK852703.1
DBLINK      BioProject: PRJNA203242
            BioSample: SAMN02146280
KEYWORDS    WGS.
SOURCE      Zootermopsis nevadensis
  ORGANISM  Zootermopsis nevadensis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
            Blattoidea; Termitoidae; Termopsidae; Zootermopsis.
REFERENCE   1  (bases 1 to 560840)
  AUTHORS   Terrapon,N., Li,C., Robertson,H.M., Ji,L., Meng,X., Booth,W.,
            Chen,Z., Childers,C.P., Glastad,K.M., Gokhale,K., Gowin,J.,
            Gronenberg,W., Hermansen,R.A., Hu,H., Hunt,B.G., Huylmans,A.K.,
            Khalil,S.M., Mitchell,R.D., Munoz-Torres,M.C., Mustard,J.A.,
            Pan,H., Reese,J.T., Scharf,M.E., Sun,F., Vogel,H., Xiao,J.,
            Yang,W., Yang,Z., Yang,Z., Zhou,J., Zhu,J., Brent,C.S., Elsik,C.G.,
            Goodisman,M.A., Liberles,D.A., Roe,R.M., Vargo,E.L., Vilcinskas,A.,
            Wang,J., Bornberg-Bauer,E., Korb,J., Zhang,G. and Liebig,J.
  TITLE     Molecular traces of alternative social organization in a termite
            genome
  JOURNAL   Nat Commun 5, 3636 (2014)
   PUBMED   24845553
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 560840)
  AUTHORS   Hu,H. and Poulsen,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2013) China National Genebank, BGI, Building
            No.11, Beishan Industrial Zone, Yantian District, Shenzhen,
            Guangdong 518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Assembly Name         :: ZooNev1.0
            Long Assembly Name    :: Zootermopsis nevadensis 1.0
            Genome Coverage       :: 98.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560840
                     /organism="Zootermopsis nevadensis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold352"
                     /db_xref="taxon:136037"
                     /chromosome="Unknown"
                     /tissue_type="whole organism"
                     /note="a mixed sample from a naturally inbred family that
                     contains both sexes"
     assembly_gap    2692..2821
                     /estimated_length=130
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    8175..8201
                     /estimated_length=27
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    23517..23538
                     /estimated_length=22
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    24108..24868
                     /estimated_length=761
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<32122..>66882)
                     /locus_tag="L798_07770"
     mRNA            complement(join(<32122..32249,34096..34489,37131..37382,
                     37839..37988,41637..41796,41917..42060,42485..42582,
                     45662..45879,53507..53635,55416..55623,57250..57384,
                     66435..66671,66799..>66882))
                     /locus_tag="L798_07770"
                     /product="Protein BAT2-like"
     CDS             complement(join(32122..32249,34096..34489,37131..37382,
                     37839..37988,41637..41796,41917..42060,42485..42582,
                     45662..45879,53507..53635,55416..55623,57250..57384,
                     66435..66671,66799..66882))
                     /locus_tag="L798_07770"
                     /codon_start=1
                     /product="Protein BAT2-like"
                     /protein_id="KDR18078.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q7TPM1"
                     /translation="MSTLSGIASKGEKGKSKFQSLDINSLYRGESLEPHQQKSTLPRK
                     HGMQSLGKVPSARRPPANLPSLKSEHSGNDPAISLVPSGGTGWGSKPGETSQAVTPTQ
                     PPPPLVPAATTAVAAPQTSVASAAVPSVVSGAPAAVTPPAPSQRPPLPIQQAHTDKSW
                     SSIMAGPGEGGAHPPSFLAHQSPQFQHEFPKLSSGDGQAPATGQKGGSDTQYGPGPSL
                     RPQTEGSWIQGGGRNTVQAPGQIPPVATGSQPGAATVSGPLQHLPPGADPVGGRNNLV
                     PCAAQGVGMGLGGPGTTGQSTTATSTLPGVGVTPPPLGGPPLTHMPPGAGPPQFRALI
                     PPFMYRGSFPGAFPPNFQGPMHGPPRPRFPYPPENRFMPPSRTTAAAVDEEISPRPII
                     KEEDLSKMDDIAHDAGWATHDDIDYNQKLAFSDDESTQEDEVRKDIRSLSHSSKEEKR
                     SAERDRDSESSERERDRDERRGHASGPRAVEDEEIWRERKRQHNEEVAIAVERAKQRK
                     EEEEKRYQEQLKQAANKKLQELEEKIRVKNTDSKEYTEEAPVPIPLPEWEKEREFRDK
                     EREREGRDKDRSRTSSEGRDEKTVRDTRDTGSDFRQLTQMGDRSTFLRNERDRSERER
                     ERDIRSERERDRDRERHDQQPMFSRQFQSNLPPRFQKQQAERNQHQFLRVGSGGSSSS
                     PQPLSGTGSSSQGAPSSQGALTTQGAPSTQMFDPRWTGSTTHGGSTLHFPGSLPTGSA
                     SLTMKSGPPRRHADNEAAGSARERDRERDRXXXXXGSC"
     assembly_gap    32134..32147
                     /estimated_length=14
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            47857..48095
                     /locus_tag="L798_07771"
                     /note="nonfunctional due to frameshift"
     assembly_gap    48743..49661
                     /estimated_length=919
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    64680..64783
                     /estimated_length=104
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    71316..71539
                     /estimated_length=224
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <73783..>75875
                     /locus_tag="L798_07772"
     mRNA            join(<73783..73860,74058..74219,75552..75670,
                     75749..>75875)
                     /locus_tag="L798_07772"
                     /product="Peptidyl-prolyl cis-trans isomerase-like 3"
     CDS             join(<73783..73860,74058..74219,75552..75670,75749..75875)
                     /locus_tag="L798_07772"
                     /codon_start=1
                     /product="Peptidyl-prolyl cis-trans isomerase-like 3"
                     /protein_id="KDR18079.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q9H2H8"
                     /translation="QSVTIHTDVGDMKIELFCEYCPKACENFLALCASDYYNGCFFHR
                     NIKSFIVQTGDPTQTGKGGNSIWGRKFEDEFKEDLKHNARGMVSMANNGPNTNASQFF
                     ITYAPQPHLDLKYTLFGKVIDGSDTLDELEKLPVNPKNYKPLTDTRINSITIHANPLA
                     S"
     gene            complement(<79151..>123161)
                     /locus_tag="L798_07773"
     mRNA            complement(join(<79151..79328,79866..79973,81811..81973,
                     83019..83275,84176..84324,85958..86206,87627..87824,
                     88895..89036,89308..89452,90809..90971,93675..93880,
                     95672..95795,96214..96426,122892..>123161))
                     /locus_tag="L798_07773"
                     /product="Sarcosine dehydrogenase, mitochondrial"
     CDS             complement(join(79151..79328,79866..79973,81811..81973,
                     83019..83275,84176..84324,85958..86206,87627..87824,
                     88895..89036,89308..89452,90809..90971,93675..93880,
                     95672..95795,96214..96426,122892..>123161))
                     /locus_tag="L798_07773"
                     /codon_start=1
                     /product="Sarcosine dehydrogenase, mitochondrial"
                     /protein_id="KDR18080.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q99LB7"
                     /translation="NLCVSGGGSQGCNTLYQLTKRGVKAVLLERAKLTSGTTWHTAGC
                     IWRLRPNDVDTILLNDTRDVLMQLEPETGIDPGWIMNGGIFIAYNEERLDEYRRLATM
                     GVSFGIESSILDPEETKKVFPLIDADVIQGSLYSPGDGIVDPSKLSEALTQSAIKGGG
                     QVLEKCPLTSILTGKNGFGAQQITGVITPFGSIKTNCIVNCCGVWSREVTAMVGLHLP
                     LVPMKHAYVVTENIPEVQGLPNIRDHDASIYFRVQEQSLCMGGYESNPILLEKVPHDF
                     EFSLYELDWIVFSRHMRGAVNLIPKFETAGIKGTVCGPESFTPDHKPLLGEDPRLHGL
                     YHNCGYNAAGTMLSGGCSDQLAQWIIHGRPTLHMFDYDIRRFTPEQRKDAAWVFAKSH
                     ESYATNYDIVFPHDEDLAGRNFHQGPFHQEMVDAGCVFEERQGYERPGWFSPKGPAPV
                     PNYDWYGSYGTPRNSDVRYENMLKSDHTFDFSKIHHVIGEECLACREQVALFDMSQFG
                     KLYMCGPDAQKAADWLFTADTHHPISRTVYTCLLNTKAGVEADVIVSAIETGTGGLVD
                     PIFKGRGFYIVTNGLSAYHTWAHIYRILSEKNFKVGLTDLSEKIGVLSVQGPNSRDVL
                     QPLVNTSLGDEEFPYSTTHLVRVADHLCRAVRISSVGELGWQLHIPWDSCSSVYKAIL
                     EQGKKYGLRHAGYRALNSLSSEKGYHLWNADLRTDDNPLEAGLDLICREDGDYVGKEA
                     LDVIKQKGLKKKLAFFQLQKQIPVWGLETIWRDDQVVGFLRRGEYGYALGASIGQGYV
                     KHPEGRRVTPEFLQNGHYQVEVMGNRYDVSVYFKSPFDPNGKRPLGIYDEQLPIRQ"
     assembly_gap    79647..79671
                     /estimated_length=25
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    87107..87119
                     /estimated_length=13
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    116668..117790
                     /estimated_length=1123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    122009..122176
                     /estimated_length=168
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<131388..>149948)
                     /locus_tag="L798_07774"
     mRNA            complement(join(<131388..131534,133291..133495,
                     135904..136088,136181..136288,137104..137279,
                     137789..137919,139154..139470,141038..141190,
                     142143..142250,143307..143516,147947..148048,
                     149823..>149948))
                     /locus_tag="L798_07774"
                     /product="Myotubularin-related protein 2"
     CDS             complement(join(131388..131534,133291..133495,
                     135904..136088,136181..136288,137104..137279,
                     137789..137919,139154..139470,141038..141190,
                     142143..142250,143307..143516,147947..148048,
                     149823..149948))
                     /locus_tag="L798_07774"
                     /codon_start=1
                     /product="Myotubularin-related protein 2"
                     /protein_id="KDR18081.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q13614"
                     /translation="MDSKGSAELLNSETNHSKHASSDSLASDSKSSSLNSKLGQESVS
                     SGKGSPSKSYCSSSSTSTENVVSTLESKIKGKTNLSESVPPSRPDDPPLLPGEKVQGV
                     AREVTYLCPYSGPARGVLSVTNYKLHFRSMDRDTPYVVDVPLGVVSRIEKVGGASSRG
                     ENSYGIEVFCKDMRNLRFAHKQENHSRRNVFEKLQQYAFPLSHKLPLFAFEYSETLPE
                     NGWTVHEPIAELKRMGVPNDMWKISKINENYEICDSYPTVLAVPAQATDDDLRAVAAF
                     RSRGRIPVLSWIHPESQATISRCSQPLVGVSGKRSREDERYIQLIMDANAQSHKMFIM
                     DARPSANAIANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKELCFPSIEES
                     RWLSGVESTYWLKHIKCILAGAVRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLML
                     DPYYRTIKGFEVLIEKEWLGFGHKFQHRIGHGDDHHSDADRSPVFLQFIDCVYQITTQ
                     FPNAFEFNDHFLITILDHLYSCRFGTFLFNSDRERASEGVKQKTVSLWSFINSDLDVY
                     RNPLYWSPAAYQQVLVPIASVRHITLWKGHYCRWNPSMRPQDPVYQRTMELLVLKEQL
                     EKLTEECKREQQSRAARNMATPPRLASPIRN"
     gene            151717..151978
                     /locus_tag="L798_07775"
                     /note="nonfunctional due to frameshift"
     assembly_gap    153072..153094
                     /estimated_length=23
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <159156..>159722
                     /locus_tag="L798_07776"
     mRNA            <159156..>159722
                     /locus_tag="L798_07776"
                     /product="hypothetical protein"
     CDS             159156..159722
                     /locus_tag="L798_07776"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KDR18082.1"
                     /translation="MVLKEHLTVMAVVCLVANGVHESIASRIDKMQSELREAAYRICA
                     EDEVAGAMGLINHLAKACFVQGSANERIQTIVRSKGESAMLSACIDTALDEESAILSA
                     RERGFTMQRQNKGPEVAIRVIGSNLNAFKGLSRGTRFANRDMNHRIVHPGRGIDTEAS
                     RNAGFNAHMVTGSTDPRVVRRPSHFNVS"
     assembly_gap    166683..167035
                     /estimated_length=353
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    183089..183220
                     /estimated_length=132
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    185302..185320
                     /estimated_length=19
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    187412..187621
                     /estimated_length=210
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    189305..189348
                     /estimated_length=44
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    194790..194820
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    203354..203628
                     /estimated_length=275
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    205129..205314
                     /estimated_length=186
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    208974..210712
                     /estimated_length=1739
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    213773..213869
                     /estimated_length=97
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    217584..217597
                     /estimated_length=14
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    224032..224425
                     /estimated_length=394
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    233751..233809
                     /estimated_length=59
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    237804..238267
                     /estimated_length=464
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    238495..238536
                     /estimated_length=42
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    240459..241668
                     /estimated_length=1210
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    244880..245532
                     /estimated_length=653
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    249258..250261
                     /estimated_length=1004
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    264499..265100
                     /estimated_length=602
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    268670..269128
                     /estimated_length=459
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    270118..270211
                     /estimated_length=94
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    290172..290231
                     /estimated_length=60
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <294930..>317063
                     /locus_tag="L798_07777"
     mRNA            join(<294930..295020,300400..300532,302077..302213,
                     303188..303309,305325..305469,306388..306500,
                     307967..308192,309727..309846,310738..310913,
                     313201..313334,314509..314648,314743..314824,
                     314925..315069,315523..315715,316912..>317063)
                     /locus_tag="L798_07777"
                     /product="Cuticlin-1"
     CDS             join(294930..295020,300400..300532,302077..302213,
                     303188..303309,305325..305469,306388..306500,
                     307967..308192,309727..309846,310738..310913,
                     313201..313334,314509..314648,314743..314824,
                     314925..315069,315523..315715,316912..317063)
                     /locus_tag="L798_07777"
                     /codon_start=1
                     /product="Cuticlin-1"
                     /protein_id="KDR18083.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q03755"
                     /translation="MRLTSKCNIPACRWTTVILLLILSHAVMSLSRVAFEKLTELDYR
                     GSTYYTVKNLSLYECQGWCREEPDCQAAAFSFVVNPLTPVQETLCQLQNETSANNPTA
                     VPQRSVNLYYMVKMQIRSDNVCLRPWAFERVPNKMIRGLDNALIYTSTKEACLAACLN
                     EHRFTCRSLEYNYVTLQCHLSDSDRRTTGQYIQFVDAPGVDYFENLCLKANQACKGNR
                     PFQIPRIGVNEDKVSQYASLHYYVDKELQVTSEAACRLACEIENEFLCRSFLYQGAPI
                     GNSYNCQLFHLDHKTLPDGPSTYLNAERPLIDNGERVGNYYENFCEKTVTNPHENLPL
                     VFENTEDPSINNLTRNDINCDKTGTCYDVSVNCKDTRIAVQVRTNKPFNGRIYALGRS
                     ETCNIDVQNSDLFRLDLTMSGQDCNTQSVTGVYTNTVVLQHHSVVMTKADKIYKVKCT
                     YDMSSKNITFGMMPIRDPEMISITSAPEAPPPRIRIVDSRGREVETVRIGDKLTFRIE
                     IPDDTPYGIFARSCVAMAKDSKSTFQIIDDEGCPVDPSIFPSFTPDGNALQSIYEAFR
                     FTESYGVIFQCNVKYCLGPCQPAVCEWGHESVESWGRRKRSVASNHSSDETEDDMTLS
                     QEILVLDFGDDKNSQFLRSEASSSDFGKDKTVTIVEPCPTKTSVLALGVTCALLVLIY
                     ISTIFCYYVKKWLSPRKSLA"
     assembly_gap    300858..300974
                     /estimated_length=117
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<316965..>327318)
                     /locus_tag="L798_07778"
     mRNA            complement(join(<316965..317084,323640..323768,
                     324798..324980,325914..326048,326137..326374,
                     327194..>327318))
                     /locus_tag="L798_07778"
                     /product="Exosome complex exonuclease RRP4"
     CDS             complement(join(316965..317084,323640..323768,
                     324798..324980,325914..326048,326137..326374,
                     327194..327318))
                     /locus_tag="L798_07778"
                     /codon_start=1
                     /product="Exosome complex exonuclease RRP4"
                     /protein_id="KDR18084.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q8VBV3"
                     /translation="MTQNVYIRLASQRVDNTIVAASNIPRLYTPGEIITCMSGFMRGH
                     GTYMEEDALTASVAGVVEQVNKLISVRPIKNRYNGEVGDVIVGRITEVQQKRWKVDTN
                     SRLDSVLLLSSVNLPGGELRRRSVEDEHMMRKYLKEGDLISAEVQKVYDDGSLSLYTR
                     SLKYGKLCQGVLVKVFPSLVKRCKNHFHNLPCGASIIIGNNGFIWICPTINDRGEDGL
                     GGFTENLKEVVPRADREVIARLRNCVLALASCKMMLFDTSILYSFEESLKYEQGCDPG
                     YSSKTLPWRQPFLYIVAENGADVDKHKKGTCHT"
     assembly_gap    322087..322113
                     /estimated_length=27
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<332599..>364131)
                     /locus_tag="L798_07779"
     mRNA            complement(join(<332599..332690,335654..335794,
                     337804..338099,340470..340763,342099..342212,
                     342699..342966,344460..344625,348233..348372,
                     360514..360682,361345..361508,364008..>364131))
                     /locus_tag="L798_07779"
                     /product="CTL-like protein 2"
     CDS             complement(join(332599..332690,335654..335794,
                     337804..338099,340470..340763,342099..342212,
                     342699..342966,344460..344625,348233..348372,
                     360514..360682,361345..361508,364008..>364131))
                     /locus_tag="L798_07779"
                     /codon_start=1
                     /product="CTL-like protein 2"
                     /protein_id="KDR18085.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q7PRJ0"
                     /translation="GECLKYDPTFKGPLHKRSCTDVICLLLFIFFIAAWIAVGTYAFM
                     HGDPARLLTPTDSEGRRCGLDVEVRNKPSLFYFDLTKCAVQNSIINGCPTPQVCVEKC
                     PTINFAFITEVNDWTSKMICKEGVTLGDRSDAEKKINANQCAGYYLQSKEVYGRCLPG
                     TIDTLSEELQEVLNKTQGELEDVLVGQSGVINIVAQAKELGQKIVQDLSDSWPFIIGG
                     LVLAMLLCLVYIVLMRWFAGVMVWLSLVGVIALLSYCCYASYVKYDEMKTAEESANSN
                     AVQENSRHSRSNLFKPVEEELNEILAMKDTWLAFLIISAIILVVVLLLLIFLRSRIRI
                     AIALIKEASKWAGFTEMIYLIISWCSHMLVKMSYISVATLEPNTVVECIMCFLCLLQT
                     GDKCDPFTFAACSQLCHTAVCQFFNYEKENYVNYLHAFNIFGIFWGLFFVSALGEIIL
                     AATFATWYWTFNKSDVPFFVLTVSIGRTLRYHLGTIAFGSLILAICRLIRVILEYINH
                     KLKKYDNAFVKAIMCCLRCFFWCLEKFIKFINKNAYIMCAIHGKNFCRSAKDAFNLLM
                     RNVIRVFVLDKVKYTDYVQVPMLNYSIVPVLIIGFGTYFIATIFFGVYEMAVDTLFLC
                     FLEDCERNDGSREKPYFMSKNLMNILHKKNK"
     assembly_gap    335819..335856
                     /estimated_length=38
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    341717..341788
                     /estimated_length=72
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    355582..355808
                     /estimated_length=227
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    357463..357495
                     /estimated_length=33
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    370837..371311
                     /estimated_length=475
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    373019..373370
                     /estimated_length=352
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    374631..376119
                     /estimated_length=1489
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    377755..377903
                     /estimated_length=149
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    397135..397171
                     /estimated_length=37
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <403928..>406552
                     /locus_tag="L798_07780"
     mRNA            join(<403928..404099,404585..404669,406465..>406552)
                     /locus_tag="L798_07780"
                     /product="hypothetical protein"
     CDS             join(403928..404099,404585..404669,406465..406552)
                     /locus_tag="L798_07780"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KDR18086.1"
                     /translation="MAQTRHENELGTASDKCQRTIGDEDNGSSYLPTSKNTTTSTGRK
                     SFSRRRSSCFDTQEISGSTSNKNTNHQLGVEESGTAATSTKECMQKLKLEKEAWRTMC
                     EERKKAYETMKE"
     gene            complement(<414413..>429627)
                     /locus_tag="L798_07781"
     mRNA            complement(join(<414413..414801,418650..418778,
                     419112..419161,420451..420615,422489..422658,
                     424807..424961,429079..429207,429313..429459,
                     429555..>429627))
                     /locus_tag="L798_07781"
                     /product="Stress-activated map kinase-interacting protein
                     1"
     CDS             complement(join(414413..414801,418650..418778,
                     419112..419161,420451..420615,422489..422658,
                     424807..424961,429079..429207,429313..429459,
                     429555..429627))
                     /locus_tag="L798_07781"
                     /codon_start=1
                     /product="Stress-activated map kinase-interacting protein
                     1"
                     /protein_id="KDR18087.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q291K8"
                     /translation="MALYDNKHWLLSHIRNSFISSDDTGMCEMVMAGEDIPRKLISMT
                     KLDYYPGVDESDEEDGEMDVMGQSFDIQSDIDFGIHRQRSSTAQRLEKMDQDRKKTNR
                     IKHVKWEWNPVVLTDEERAGLFERKNFRQNRKDVHVKKLSLLSEQMEKCPNLPQNPFV
                     EYAKYDGNAQMGVSTRKYGIFLTMLETAERNYPMHVVVLAQAKVQDLIGLICWKYTLE
                     HGQHKLKDSVDHYGLYIAEDDGEVDWDFPCLDPRETVGKFGFNYLALVECQKKDEDSK
                     SVEREETEVILSQETLLKPKSQQQDLEDLIRMQGHMIAMEAPLYQSYRVYIINKVRAK
                     TEIHLGVSGEKVEIDPVMQQKVSAKFWNRQKAVSYDMDSIAACDLTDTKSSSRSTFRL
                     VYHHPASGEQAESLQHHSDFSSYKHHDFEADHRTAEEIVQKINHILELRSSVRRKEYL
                     ALRERKSHRKRSFHLGPR"
     gene            <430625..>439563
                     /locus_tag="L798_07782"
     mRNA            join(<430625..430755,433605..433874,434932..435144,
                     436251..436441,437048..437240,439134..>439563)
                     /locus_tag="L798_07782"
                     /product="TRM1-like protein"
     CDS             join(430625..430755,433605..433874,434932..435144,
                     436251..436441,437048..437240,439134..439563)
                     /locus_tag="L798_07782"
                     /codon_start=1
                     /product="TRM1-like protein"
                     /protein_id="KDR18088.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q4R6C7"
                     /translation="MESNPEETNKTPVTEYDVKLFIDNYGASSKKSEVLYNKTTALNR
                     ALISTALAVYAKSGKSCFKPVRCLDGIGASGIMGLLWKKHILDNIGVTINDSRTKACE
                     RIKENAQLNDLNVKVLNRDTCALLHEQTYNFISLNCHTVAACYLDSAFRNLPKDGILA
                     ITTTDDAALHAITPEIALRNYAGFVTRTLYKKELAVRLFLAAVARAAARYNKGVHVLC
                     SVAFKSSFTVLLTVKRGPTHANKSIRNIRKLIHCSMCEDRTFYPLTNYPIESPSSLLG
                     CDCSSNLPGKVVLELGPVWSGSIFNEEFLVAMYHHSCKFPWKVKASVLLGQLVAEARC
                     SITNENNLPQPQGNNFVVKREHETEEENSVKRLKVHNDVPSDREILNSGKLISVSTIK
                     SENMNPVITLDSDKDSAPPFYFNLHRHSLKGPQLLRVDIVIQFLRRAGYRASRTHFDR
                     EAVRTNANLSDLTKILTQAANMNTQ"
     assembly_gap    430804..430828
                     /estimated_length=25
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(441031..441181)
                     /locus_tag="L798_07783"
                     /note="nonfunctional due to frameshift"
     gene            complement(<443278..>465535)
                     /locus_tag="L798_07784"
     mRNA            complement(join(<443278..443349,445379..445476,
                     447919..448107,457196..457380,459333..459372,
                     462172..462297,463522..463687,465479..>465535))
                     /locus_tag="L798_07784"
                     /product="Nucleotide-binding protein-like"
     CDS             complement(join(443278..443349,445379..445476,
                     447919..448107,457196..457380,459333..459372,
                     462172..462297,463522..463687,465479..465535))
                     /locus_tag="L798_07784"
                     /codon_start=1
                     /product="Nucleotide-binding protein-like"
                     /protein_id="KDR18089.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q8TB37"
                     /translation="MLDSRSLVIFLLSKYRRWNANIYCSCQKTGSSELENRQAQLMAR
                     GLPKQKPITGVKQIILVASGKGGVGKSTTAVNLSLALKSVEPNKVVGLLDADVYGPSV
                     PLMMGLHETPLLTKDNLMIPLVNYGLQCMSLGFLVDEKSPVIWRGLMVMSALEKLLRQ
                     VAWDAVDYLIVDTPPGTGDTHLSLIQNLPLAGVVLVTTPQIAALEVTRRGAIMFQKLK
                     VPIVGVVQNMNTFVCPKCKNSLALYGHGTEDLASELGIDLLQDIPLDAAITETTDQGK
                     PIVVALPNSTQTFCGVLSHIRRGWMRQRGKICLT"
     assembly_gap    446829..447121
                     /estimated_length=293
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    451770..451807
                     /estimated_length=38
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    453073..456006
                     /estimated_length=2934
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <468716..>486385
                     /locus_tag="L798_07785"
     mRNA            join(<468716..468747,469340..469427,469564..469692,
                     470196..470317,470852..471013,471961..472143,
                     472238..472421,473501..473717,474621..474764,
                     475366..475441,476670..476789,477875..478122,
                     479426..479631,483192..484253,484875..485141,
                     486290..>486385)
                     /locus_tag="L798_07785"
                     /product="Protein SMG7"
     CDS             join(468716..468747,469340..469427,469564..469692,
                     470196..470317,470852..471013,471961..472143,
                     472238..472421,473501..473717,474621..474764,
                     475366..475441,476670..476789,477875..478122,
                     479426..479631,483192..484253,484875..485141,
                     486290..486385)
                     /locus_tag="L798_07785"
                     /codon_start=1
                     /product="Protein SMG7"
                     /protein_id="KDR18090.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q92540"
                     /translation="MGLKAAIQALKRAEKLKEKVQNSRDILNDNEAWVCQQQLQRIYQ
                     QVLILDLEFALDKKVEQELWNHGFKNYIGTLQNLAKDKKNPKRNESQAMLSWCLEAAS
                     GFYLTLLQEICTAFDLDLPFRRNESVFGNGKLWKTGDHFTVPHKNSCYYICQHCLVHL
                     GDIARYRNQNRQAEIFYRHAVQLAPNSGQPYNQLALLEASRGDRLSTVFHYVRSVAVR
                     HFFPAAATNLSRTLNKSAEEKLNVEGRNKLSVSEYVAVFLKLHGLVHNSSNLQEAEKY
                     VKILTTTLTAHVATESLTSWKLVQMLAINLFALHHAGSCVDADKLTTFSDEQLSSDEK
                     KVKHLVMDLMAGSLSAYLLPVYTLKEGDALLDYFALPAIKLTLDWIRLDSKVLLDSAF
                     TSRLQIWPSLCKLLNGLQQALTDFSTDKYSYLPLPEDRDLQGFIPLEKSFSELRFSCQ
                     DWKLDTVLLNKLRASRILEFGSWLLKQDNHRLVTRRSSPGTEESSVMFEAVGGQQVPP
                     CDLIRELEELSLTKLPSPAPSDTSSWGSAATGTSTPDNSLITGGHHSPPLVDQGLSDI
                     GHERRAGILKPQGSLEKAREKEATEVMWNHNQNHAVHITKRGRQNVAMQAIMRKSVLL
                     GEQESARNLETKQVTFKTPSPSVSPGSCQSAEDGQVVKSNKTSAWQQPKQQQNHVLQP
                     LPQPPPQTLTVPYPYQNQQTPQHNLIQQHNQVPRGQVSQAQSVFDNGEMTCQNGLMGA
                     LHHHSQPISTNGSSVSSSYGSQMSSFPSHPAQIPFHQLPPHSSPGANLPMSDNPSSNI
                     GNGYTSSHQSYGMKLRQPPFAPWQEESPPLPPSWWCDRQGMTRQSSGGSSQQDETVTS
                     QAPGTQMNLSLPTLNYLQGSNILQQPLQRISMKSPTDLVPDDLYSNANWHSRHQMSAP
                     PPQPLNLNLNLQHQLMSGTSAQLPSSFTPPAATQTSISRSLLQNSSGFQGSQNRADVN
                     QLSVFGISGNQKTQRPNAEVTLDCSTKENHQGSSSVTGENSTVFSSTPNTSSFSALGL
                     GTNTYSLFSTPSWVNPAPTCGFELEGNSCGNGLSNVMGVPGKSSLSIGQQSLWSGPGP
                     SPLERLLEQQKQLREGPAPKGGT"
     assembly_gap    482074..482615
                     /estimated_length=542
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<494492..>498810)
                     /locus_tag="L798_07786"
     mRNA            complement(join(<494492..494600,494861..495077,
                     496220..496411,497509..497611,498733..>498810))
                     /locus_tag="L798_07786"
                     /product="Casein kinase II subunit beta"
     CDS             complement(join(494492..494600,494861..495077,
                     496220..496411,497509..497611,498733..>498810))
                     /locus_tag="L798_07786"
                     /codon_start=1
                     /product="Casein kinase II subunit beta"
                     /protein_id="KDR18091.1"
                     /db_xref="UniProtKB/Swiss-Prot:P28021"
                     /translation="RKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQ
                     VPHYRQALDMILDLEPDDELDDNPNQSDLIEQAAEMLYGLIHARYILTNRGIGQMIEK
                     YQSGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAY
                     FGTGFPQMLFMVHPEYRPKRPSNQFVPRLAQTFLLTQLYGFKIHPLAYQIQQQASSNF
                     KAPLRALSYNNGKR"
     gene            <500546..>527260
                     /locus_tag="L798_07787"
     mRNA            join(<500546..500638,501902..502010,507435..507643,
                     508581..508830,508924..509115,512476..512536,
                     516926..517036,519303..519466,522641..522834,
                     527144..>527260)
                     /locus_tag="L798_07787"
                     /product="Nucleolar complex protein 4-like protein B"
     CDS             join(500546..500638,501902..502010,507435..507643,
                     508581..508830,508924..509115,512476..512536,
                     516926..517036,519303..519466,522641..522834,
                     527144..527260)
                     /locus_tag="L798_07787"
                     /codon_start=1
                     /product="Nucleolar complex protein 4-like protein B"
                     /protein_id="KDR18092.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q6NU91"
                     /translation="MLSKELRTQASEFLKSRKNANNLISIISLLENEGNVQPCILALE
                     MIFTEVLKRREICRDFTAAANEHEVNAETKYRVWLLECYEDTFMRLLSIMSKHKSSMQ
                     LQALTTMMKLLSLEGKYPVDYRENQEYYFPVQKLRPIVLELLSSECSRENLIARFQEF
                     TAYEDVLYYVWKLLPTIVLNKKQPNETFIKNFLSLLDKIPVPKQGVGNKDNWEFVLCG
                     KEGGPDFVQNTDHLHKWLNRVWSAVIRWEHSPATHQQLLVVLLERILPHLDKPLLLTD
                     YLMDSLDMGGAVSLLALQGIFILIKNHNLEYPNIYGKLYSMFEPEIFHTKYKARLFYL
                     SDMFLSSTHLSEHLVAAFAKRLARLTLVAPPQDIHIILMFIGNLVLRHPGLKRLFNHP
                     TGGEVSLDPYIMEERDPLKSQAIESSLWELHALQNHILPSIATAAKFINMPLPSVEWD
                     MSKILENSADDIFEKEMKKKVKEITLTFDRPQSLTLSRGERVTQYWTLT"
     assembly_gap    510030..510345
                     /estimated_length=316
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    514815..514852
                     /estimated_length=38
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    532584..533106
                     /estimated_length=523
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <534184..>553230
                     /locus_tag="L798_07788"
     mRNA            join(<534184..534360,540988..541139,542075..542246,
                     544161..544276,547022..547152,547334..547456,
                     549412..549536,551367..551583,552726..552844,
                     553066..>553230)
                     /locus_tag="L798_07788"
                     /product="hypothetical protein"
     CDS             join(534184..534360,540988..541139,542075..542246,
                     544161..544276,547022..547152,547334..547456,
                     549412..549536,551367..551583,552726..552844,
                     553066..>553230)
                     /locus_tag="L798_07788"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KDR18093.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q23835"
                     /translation="MKSLVCVWLLVLVVVVHSQKDPNVWANRSAIVHLFEWKFNDIAD
                     ECERFLAPNGYAGVQVSPVQENVIVSSPNRPWWERYQPISYKIVTRSGDEAAFRSMVR
                     RCNDVGVRIYVDIVINHMTGDHATAVGVGGSTADTYNLQYPAVPFGPNDFNQPQCGID
                     NYEDPNNVRNCELVGLHDLNQGSGYVREKIIGFLNLLVDCGVAGFRVDAAKHMWPSDL
                     EDIYSQVNNLRTDHGFAPGSRPFYYQEVIDLGGEAIHNTDYTGFGRITEFKYSAEIGN
                     AFRGNNPIKYLWNFGEDWGFVYNGDALVFVDNHDNQRGHGAGGASILTYKEPKLYKMA
                     VAFVLAYPYGYPRVMSSFDFSNSDQGPPQDGDGNILSPIIYNDNTCGNGWICEHRWRQ
                     IYNMVGFRNVVAGTGVNDWWDNSDKQIAFCRGGRGFIAFNDQYNVDLKETLQTCLPAG
                     IYCDIISGSKVGNNCSGKSVIVDGSGRAYIEILYAESDGVLAIHAEVSI"
     gene            complement(<543451..>543699)
                     /locus_tag="L798_07789"
     mRNA            complement(<543451..>543699)
                     /locus_tag="L798_07789"
                     /product="hypothetical protein"
     CDS             complement(<543451..>543699)
                     /locus_tag="L798_07789"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KDR18094.1"
                     /translation="QRDFIGVFPNFYIALSILLTLPVTVAARERSFSKLKSIKNHLRS
                     SMIQDRLNSLALNSVENEICDELAFDDIVNEFAIMKFRK"
     assembly_gap    544309..544379
                     /estimated_length=71
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AUST01013805.1:1..2691,gap(130),AUST01013806.1:1..5353,
            gap(27),AUST01013807.1:1..15315,gap(22),AUST01013808.1:1..569,
            gap(761),AUST01013809.1:1..7265,gap(14),AUST01013810.1:1..16595,
            gap(919),AUST01013811.1:1..15018,gap(104),AUST01013812.1:1..6532,
            gap(224),AUST01013813.1:1..8107,gap(25),AUST01013814.1:1..7435,
            gap(13),AUST01013815.1:1..29548,gap(1123),AUST01013816.1:1..4218,
            gap(168),AUST01013817.1:1..30895,gap(23),AUST01013818.1:1..13588,
            gap(353),AUST01013819.1:1..16053,gap(132),AUST01013820.1:1..2081,
            gap(19),AUST01013821.1:1..2091,gap(210),AUST01013822.1:1..1683,
            gap(44),AUST01013823.1:1..5441,gap(31),AUST01013824.1:1..8533,
            gap(275),AUST01013825.1:1..1500,gap(186),AUST01013826.1:1..3659,
            gap(1739),AUST01013827.1:1..3060,gap(97),AUST01013828.1:1..3714,
            gap(14),AUST01013829.1:1..6434,gap(394),AUST01013830.1:1..9325,
            gap(59),AUST01013831.1:1..3994,gap(464),AUST01013832.1:1..227,
            gap(42),AUST01013833.1:1..1922,gap(1210),AUST01013834.1:1..3211,
            gap(653),AUST01013835.1:1..3725,gap(1004),AUST01013836.1:1..14237,
            gap(602),AUST01013837.1:1..3569,gap(459),AUST01013838.1:1..989,
            gap(94),AUST01013839.1:1..19960,gap(60),AUST01013840.1:1..10626,
            gap(117),AUST01013841.1:1..21112,gap(27),AUST01013842.1:1..13705,
            gap(38),AUST01013843.1:1..5860,gap(72),AUST01013844.1:1..13793,
            gap(227),AUST01013845.1:1..1654,gap(33),AUST01013846.1:1..13341,
            gap(475),AUST01013847.1:1..1707,gap(352),AUST01013848.1:1..1260,
            gap(1489),AUST01013849.1:1..1635,gap(149),AUST01013850.1:1..19231,
            gap(37),AUST01013851.1:1..33632,gap(25),AUST01013852.1:1..16000,
            gap(293),AUST01013853.1:1..4648,gap(38),AUST01013854.1:1..1265,
            gap(2934),AUST01013855.1:1..26067,gap(542),AUST01013856.1:1..27414,
            gap(316),AUST01013857.1:1..4469,gap(38),AUST01013858.1:1..17731,
            gap(523),AUST01013859.1:1..11202,gap(71),AUST01013860.1:1..16461)
//