LOCUS       KK852430              605955 bp    DNA     linear   CON 05-JUN-2014
DEFINITION  Zootermopsis nevadensis unplaced genomic scaffold scaffold35, whole
            genome shotgun sequence.
ACCESSION   KK852430 AUST01000000
VERSION     KK852430.1
DBLINK      BioProject: PRJNA203242
            BioSample: SAMN02146280
KEYWORDS    WGS.
SOURCE      Zootermopsis nevadensis
  ORGANISM  Zootermopsis nevadensis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea;
            Blattoidea; Termitoidae; Termopsidae; Zootermopsis.
REFERENCE   1  (bases 1 to 605955)
  AUTHORS   Terrapon,N., Li,C., Robertson,H.M., Ji,L., Meng,X., Booth,W.,
            Chen,Z., Childers,C.P., Glastad,K.M., Gokhale,K., Gowin,J.,
            Gronenberg,W., Hermansen,R.A., Hu,H., Hunt,B.G., Huylmans,A.K.,
            Khalil,S.M., Mitchell,R.D., Munoz-Torres,M.C., Mustard,J.A.,
            Pan,H., Reese,J.T., Scharf,M.E., Sun,F., Vogel,H., Xiao,J.,
            Yang,W., Yang,Z., Yang,Z., Zhou,J., Zhu,J., Brent,C.S., Elsik,C.G.,
            Goodisman,M.A., Liberles,D.A., Roe,R.M., Vargo,E.L., Vilcinskas,A.,
            Wang,J., Bornberg-Bauer,E., Korb,J., Zhang,G. and Liebig,J.
  TITLE     Molecular traces of alternative social organization in a termite
            genome
  JOURNAL   Nat Commun 5, 3636 (2014)
   PUBMED   24845553
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 605955)
  AUTHORS   Hu,H. and Poulsen,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2013) China National Genebank, BGI, Building
            No.11, Beishan Industrial Zone, Yantian District, Shenzhen,
            Guangdong 518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Assembly Name         :: ZooNev1.0
            Long Assembly Name    :: Zootermopsis nevadensis 1.0
            Genome Coverage       :: 98.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605955
                     /organism="Zootermopsis nevadensis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold35"
                     /db_xref="taxon:136037"
                     /chromosome="Unknown"
                     /tissue_type="whole organism"
                     /note="a mixed sample from a naturally inbred family that
                     contains both sexes"
     assembly_gap    1006..1416
                     /estimated_length=411
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    3765..3804
                     /estimated_length=40
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    11428..11923
                     /estimated_length=496
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <13717..>13923
                     /locus_tag="L798_07755"
     mRNA            <13717..>13923
                     /locus_tag="L798_07755"
                     /product="hypothetical protein"
     CDS             <13717..13923
                     /locus_tag="L798_07755"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KDR24021.1"
                     /translation="APCDFFLFPQMKIQLKGRRFETIEEIQAESQMVLDRLTKKDFQG
                     CFQAWQRRWDRCVHSQGNYVEGDG"
     assembly_gap    50363..50392
                     /estimated_length=30
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    56726..56899
                     /estimated_length=174
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    66022..66044
                     /estimated_length=23
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<68609..>68896)
                     /locus_tag="L798_07756"
     mRNA            complement(<68609..>68896)
                     /locus_tag="L798_07756"
                     /product="Potassium/sodium hyperpolarization-activated
                     cyclic nucleotide-gated channel 2"
     CDS             complement(68609..68896)
                     /locus_tag="L798_07756"
                     /codon_start=1
                     /product="Potassium/sodium hyperpolarization-activated
                     cyclic nucleotide-gated channel 2"
                     /protein_id="KDR24022.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q9UL51"
                     /translation="MNYKESGKVHFGGDDVSLYGTPKEEPGPNPLGASEKQSFIKNQL
                     QALFQPTDNKLAMKLFGSKKALMKERIRQRAAGHWVIHPCSSFRSVLICIF"
     assembly_gap    77961..79780
                     /estimated_length=1820
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    85172..85293
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    86093..86124
                     /estimated_length=32
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    103680..103881
                     /estimated_length=202
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    117589..117770
                     /estimated_length=182
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    158556..159535
                     /estimated_length=980
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    161868..162428
                     /estimated_length=561
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    177074..178023
                     /estimated_length=950
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    183741..183944
                     /estimated_length=204
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    187202..187277
                     /estimated_length=76
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    194161..194205
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    215518..215548
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    217632..218084
                     /estimated_length=453
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    225826..226617
                     /estimated_length=792
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    228227..228610
                     /estimated_length=384
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    238948..238970
                     /estimated_length=23
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<257551..>257940)
                     /locus_tag="L798_07757"
     mRNA            complement(<257551..>257940)
                     /locus_tag="L798_07757"
                     /product="hypothetical protein"
     CDS             complement(257551..257940)
                     /locus_tag="L798_07757"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KDR24023.1"
                     /translation="MSEHFDKETVELIRHVLTTTHFPYDGSFYDQKDGRRGISSGPSR
                     GKPVCGVMWQCRQDVLWVFLKHLNNIHPNITFTTFKRNTADLRRSDKQESRWCPGTRY
                     IGSPFTWISTSTTGLNTLHRNRPFEVP"
     gene            <262820..>263245
                     /locus_tag="L798_07758"
     mRNA            <262820..>263245
                     /locus_tag="L798_07758"
                     /product="hypothetical protein"
     CDS             262820..263245
                     /locus_tag="L798_07758"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KDR24024.1"
                     /translation="MDHLCMLQRHSARKCKIYCDHAQERAAYLSYALRTLDLESLTST
                     DFLTDVRPTSDRQANRLTTATHRISVWFVKTRFESLSHIKLKLQTKTANTVLVTILSL
                     TDYLDVFLQMKFSSSTNVHSTSTEVNVINLCKSVGISQP"
     gene            complement(263377..340438)
                     /locus_tag="L798_07759"
                     /note="WD repeat-containing protein 47; nonfunctional due
                     to frameshift"
     assembly_gap    264571..267662
                     /estimated_length=3092
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    280851..280866
                     /estimated_length=16
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    308940..309495
                     /estimated_length=556
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    311559..311622
                     /estimated_length=64
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    317069..317125
                     /estimated_length=57
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    319886..319962
                     /estimated_length=77
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    320881..321744
                     /estimated_length=864
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    330805..330832
                     /estimated_length=28
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    333360..333487
                     /estimated_length=128
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    336141..336435
                     /estimated_length=295
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    341274..341308
                     /estimated_length=35
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    342788..343091
                     /estimated_length=304
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    358926..358957
                     /estimated_length=32
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    365985..366049
                     /estimated_length=65
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    369015..369388
                     /estimated_length=374
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <374463..>379647
                     /locus_tag="L798_07760"
     mRNA            join(<374463..374739,375038..375207,376194..376308,
                     376551..376711,377121..377922,379484..>379647)
                     /locus_tag="L798_07760"
                     /product="Selenocysteine-specific elongation factor"
     CDS             join(374463..374739,375038..375207,376194..376308,
                     376551..376711,377121..377922,379484..379647)
                     /locus_tag="L798_07760"
                     /codon_start=1
                     /product="Selenocysteine-specific elongation factor"
                     /protein_id="KDR24025.1"
                     /db_xref="UniProtKB/Swiss-Prot:P57772"
                     /translation="MASSVLNLNVGILGHVDCGKTTLAKALSTTASTASFDKNPQSQE
                     RGITIDLGFSSLLVDIPEHLKNSCLEEQLQLTLVDCPGHASLIRTIIGGAQIIDLMLL
                     VIDITKGMQTQTAECLVVGEVTCQKMIVVLNKTDLLPEGQKQALIDKMTRKMKLTLQN
                     SVFKDSPVVSVSAKPGGSEAVSASPPVGLQDLIETLQKFAFIPKRYVSSPFLFAVDHC
                     FSVRGQGTVMTGTVLQGTVNINDTVEIPSIHVTRKVKSMQMFRKPVECSVQGDRIGLC
                     VTQFDPRQLERGIACMPGYVPAISLAIVSVQKIKYFKGNVNTKAKFHISIGHETVMAK
                     LSFFGLLQDFSNTSEDNAFDFNKEYKFQNELLPDPTNDDEGARAHEMPVKQFAMLEFE
                     KPTLVVPKCLVIGSKLDSDIHAKTCRLAFWGHLLESVEDKNYSTTVLPKLKIYKEKCK
                     CGVVDRACNQYQVIGKSMFKKETNIQLFVGLQVELSTGETGVIESSFGQSGKVKIHIP
                     DGLKESTSVLLPSMTKKKGKHSDPQNTLPDPEPIKIVLHFRRYIYDPKKEIIQP"
     assembly_gap    381615..381692
                     /estimated_length=78
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<385747..>401748)
                     /locus_tag="L798_07761"
     mRNA            complement(join(<385747..385823,388343..388437,
                     390079..390311,392018..392077,392869..392963,
                     399072..399244,401714..>401748))
                     /locus_tag="L798_07761"
                     /product="Syntaxin-6"
     CDS             complement(join(385747..385823,388343..388437,
                     390079..390311,392018..392077,392869..392963,
                     399072..399244,401714..401748))
                     /locus_tag="L798_07761"
                     /codon_start=1
                     /product="Syntaxin-6"
                     /protein_id="KDR24026.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q5R6Q2"
                     /translation="MTLEDPFFVVKDEVCKALNKTRGLYRRWLELQDDTANNVSKDEL
                     EWTTTELRNSVRSIEWDLEDLEDTIGIVEKNPSKFKIDNKELSSRRSFIDQTREEVKT
                     MKDKMNISRNRDRDRTARQPLLENSPVRVPTSHGTTKYSKLENELDSPNRQFLDDTLQ
                     QQNHIMRTQDEQLDMISDSVGSLKTVSRQIGSELDEQAVMLDEFGNELENTDSKLDTT
                     VKKVAKVLHMSNDRRQWIAIAVLSGIMVVVIILFIVT"
     assembly_gap    397141..397161
                     /estimated_length=21
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(409375..542824)
                     /locus_tag="L798_07762"
                     /note="Laminin subunit gamma-1; nonfunctional due to
                     frameshift"
     assembly_gap    444108..446239
                     /estimated_length=2132
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    457840..457849
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    461145..461175
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    462689..462722
                     /estimated_length=34
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    492612..494170
                     /estimated_length=1559
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    497369..497429
                     /estimated_length=61
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    512379..513532
                     /estimated_length=1154
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    530748..531123
                     /estimated_length=376
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    557002..557045
                     /estimated_length=44
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    582126..582138
                     /estimated_length=13
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<588281..>604613)
                     /locus_tag="L798_07763"
     mRNA            complement(join(<588281..588442,589869..589964,
                     591344..591558,592284..592372,600896..601059,
                     603739..604010,604595..>604613))
                     /locus_tag="L798_07763"
                     /product="Zeta-crystallin"
     CDS             complement(join(588281..588442,589869..589964,
                     591344..591558,592284..592372,600896..601059,
                     603739..604010,604595..604613))
                     /locus_tag="L798_07763"
                     /codon_start=1
                     /product="Zeta-crystallin"
                     /protein_id="KDR24027.1"
                     /db_xref="UniProtKB/Swiss-Prot:O97764"
                     /translation="MVVYGKGLSNLSKLHKVMRALRIHKFGGPDNLKLENVPIPSVGD
                     SEVLVCVNAAGINPVDTYIREGAYAALPKLPAILGREVAGIVEEVGEGVKSMKKGDRV
                     FALLTENGGYAEYVACEEENVYPLSEKLTFSQGSGLYIPYFTAYRALVTKCHIKPGEI
                     LLVHGASGAVGIAAVQIAKAYGLIVAGTAGTIEGMELVKKVGADHVFNHREKGYLNNA
                     VAAIGGHGFNVVLENLANINLGADLTVLNQQARVAVVGCRGTVEVNPRSLMLTEGSII
                     GVMLAGATKEETQETAEVILKGIESGWVNPVIAREYTLDEAAEAHHDIIHNIGARGKL
                     VFKL"
     assembly_gap    604308..604341
                     /estimated_length=34
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AUST01001016.1:1..1005,gap(411),AUST01001017.1:1..2348,
            gap(40),AUST01001018.1:1..7623,gap(496),AUST01001019.1:1..38439,
            gap(30),AUST01001020.1:1..6333,gap(174),AUST01001021.1:1..9122,
            gap(23),AUST01001022.1:1..11916,gap(1820),AUST01001023.1:1..5391,
            gap(122),AUST01001024.1:1..799,gap(32),AUST01001025.1:1..17555,
            gap(202),AUST01001026.1:1..13707,gap(182),AUST01001027.1:1..40785,
            gap(980),AUST01001028.1:1..2332,gap(561),AUST01001029.1:1..14645,
            gap(950),AUST01001030.1:1..5717,gap(204),AUST01001031.1:1..3257,
            gap(76),AUST01001032.1:1..6883,gap(45),AUST01001033.1:1..21312,
            gap(31),AUST01001034.1:1..2083,gap(453),AUST01001035.1:1..7741,
            gap(792),AUST01001036.1:1..1609,gap(384),AUST01001037.1:1..10337,
            gap(23),AUST01001038.1:1..25600,gap(3092),AUST01001039.1:1..13188,
            gap(16),AUST01001040.1:1..28073,gap(556),AUST01001041.1:1..2063,
            gap(64),AUST01001042.1:1..5446,gap(57),AUST01001043.1:1..2760,
            gap(77),AUST01001044.1:1..918,gap(864),AUST01001045.1:1..9060,
            gap(28),AUST01001046.1:1..2527,gap(128),AUST01001047.1:1..2653,
            gap(295),AUST01001048.1:1..4838,gap(35),AUST01001049.1:1..1479,
            gap(304),AUST01001050.1:1..15834,gap(32),AUST01001051.1:1..7027,
            gap(65),AUST01001052.1:1..2965,gap(374),AUST01001053.1:1..12226,
            gap(78),AUST01001054.1:1..15448,gap(21),AUST01001055.1:1..46946,
            gap(2132),AUST01001056.1:1..11600,gap(10),AUST01001057.1:1..3295,
            gap(31),AUST01001058.1:1..1513,gap(34),AUST01001059.1:1..29889,
            gap(1559),AUST01001060.1:1..3198,gap(61),AUST01001061.1:1..14949,
            gap(1154),AUST01001062.1:1..17215,gap(376),AUST01001063.1:1..25878,
            gap(44),AUST01001064.1:1..25080,gap(13),AUST01001065.1:1..22169,
            gap(34),AUST01001066.1:1..1614)
//