LOCUS       KK739811               63136 bp    DNA     linear   CON 14-NOV-2014
DEFINITION  Chlamydotis macqueenii isolate BGI_N324 unplaced genomic scaffold
            scaffold24596, whole genome shotgun sequence.
ACCESSION   KK739811 JMFJ01000000
VERSION     KK739811.1
DBLINK      BioProject: PRJNA212891
            BioSample: SAMN02324157
KEYWORDS    WGS.
SOURCE      Chlamydotis macqueenii (Macqueen's bustard)
  ORGANISM  Chlamydotis macqueenii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Otidiformes; Otididae; Chlamydotis.
REFERENCE   1  (bases 1 to 63136)
  AUTHORS   Zhang,G. and Li,C.
  TITLE     Genome evolution of avian class
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 63136)
  AUTHORS   Zhang,G. and Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2014) China National Genebank, BGI, 2nd Office
            Building, Beishan Industrial Zone,Beishan Road, Yantian District,
            Shenzhen, Guangdong 518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.6
            Genome Coverage       :: 27x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..63136
                     /organism="Chlamydotis macqueenii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold24596"
                     /isolate="BGI_N324"
                     /db_xref="taxon:187382"
                     /chromosome="Unknown"
                     /sex="male"
     gene            <82..>11342
                     /locus_tag="N324_05126"
     mRNA            join(<82..160,399..532,1782..2038,2806..3027,3633..3861,
                     4382..4552,6024..6205,7605..7725,8442..8543,9726..9805,
                     10745..10855,11261..>11342)
                     /locus_tag="N324_05126"
                     /product="Polycystic kidney disease 2-like 2 protein"
     CDS             join(<82..160,399..532,1782..2038,2806..3027,3633..3861,
                     4382..4552,6024..6205,7605..7725,8442..8543,9726..9805,
                     10745..10855,11261..>11342)
                     /locus_tag="N324_05126"
                     /note="GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Polycystic kidney disease 2-like 2 protein"
                     /protein_id="KFP38379.1"
                     /db_xref="InterPro:IPR003915"
                     /db_xref="InterPro:IPR013122"
                     /db_xref="UniProtKB/Swiss-Prot:Q9JLG4"
                     /translation="YRRQLELKTTLQELLIYIVFLTDLCILVFGMVSTDMYYLNKVMS
                     HLFLEPSSSKDNGSDFGSIGSRADFWRFAEGPLLDGLYWDKWYDNMTLTLQNDSSHIY
                     YENLLLGVAQIRQLKVRNNTCSIYPYFRTFLEDCYSEYRYQVEDRSEFGLRNEPEWGY
                     TSASSLSPWYWGSMGFYSSGGYIFTLPKSKQESMEKLVFLRQNSWLTRGTRVVFIDFS
                     TYNANINLFCVIKLVVEFPATGGALTSSHIYSVKLLRYVTYYDYFLAACEVAFCLFIV
                     TFVIQEAIKMVKLKKKYFRSAWNWLDLLLLVVSILAIAFNIYRTVEVSLLMEELLAND
                     EVYPDFYFLAFWQVLYNNMIAVNIFFAWIKVFKYVSFNKTMTQLSSTLSRCAKDIIGF
                     AIMFFIIFFAYAQLGYLVFGAQVEEFSSFQNCIFTQFRIILGDFNFETIEAADRILGP
                     IYFITFVFFVFFILLNMFLAIINDTYSEVKADFKVMPSQELQITDLFRRSCNKALVKL
                     KLKKPGTDTTQADESLESHLKLQKEKETLSPKHPSTEGVDSVTAQSYVSTAEFQQLFR
                     YTTELEKELNNTKAKLRRIIQSMQ"
     assembly_gap    13883..13913
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(16516..51231)
                     /locus_tag="N324_05127"
                     /note="Protein FAM13B"
                     /pseudo
     assembly_gap    25278..25308
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(JMFJ01008169.1:1..13882,gap(31),JMFJ01008170.1:1..11364,
            gap(31),JMFJ01008171.1:1..37828)
//