LOCUS       KK502276              418741 bp    DNA     linear   CON 04-SEP-2014
DEFINITION  Egretta garzetta isolate BGI_Z169 unplaced genomic scaffold
            scaffold309, whole genome shotgun sequence.
ACCESSION   KK502276 JJRC01000000
VERSION     KK502276.1
DBLINK      BioProject: PRJNA232959
            BioSample: SAMN02596466
KEYWORDS    WGS.
SOURCE      Egretta garzetta (little egret)
  ORGANISM  Egretta garzetta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes;
            Pelecaniformes; Ardeidae; Egretta.
REFERENCE   1  (bases 1 to 418741)
  AUTHORS   Zhang,G. and Li,C.
  TITLE     Genome evolution of avian class
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418741)
  AUTHORS   Zhang,G. and Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2014) China National Genebank, BGI, 2nd Office
            Building, Beishan Industrial Zone,Beishan Road, Yantian District,
            Shenzhen, Guangdong 518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.6
            Genome Coverage       :: 74x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418741
                     /organism="Egretta garzetta"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold309"
                     /isolate="BGI_Z169"
                     /db_xref="taxon:188379"
                     /chromosome="Unknown"
                     /sex="male"
                     /geo_loc_name="China"
     assembly_gap    254..291
                     /estimated_length=38
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2481..2978
                     /estimated_length=498
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3621..12991
                     /locus_tag="Z169_07369"
                     /note="Separin; contains frameshift"
     assembly_gap    6150..7191
                     /estimated_length=1042
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    8186..8658
                     /estimated_length=473
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    9115..9161
                     /estimated_length=47
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    10158..10420
                     /estimated_length=263
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    12646..12684
                     /estimated_length=39
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    13191..13442
                     /estimated_length=252
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    15536..16022
                     /estimated_length=487
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    16490..16519
                     /estimated_length=30
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    18075..20900
                     /estimated_length=2826
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    21429..24341
                     /estimated_length=2913
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(25107..72681)
                     /locus_tag="Z169_07370"
                     /note="Sodium channel protein type 8 subunit alpha;
                     contains frameshift"
     assembly_gap    30060..30077
                     /estimated_length=18
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    56661..56912
                     /estimated_length=252
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    65978..66351
                     /estimated_length=374
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    75109..75562
                     /estimated_length=454
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    81137..81329
                     /estimated_length=193
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    82904..83106
                     /estimated_length=203
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    85524..86858
                     /estimated_length=1335
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    89377..89712
                     /estimated_length=336
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    91160..91909
                     /estimated_length=750
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    93134..93202
                     /estimated_length=69
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    94152..95542
                     /estimated_length=1391
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    95914..96362
                     /estimated_length=449
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    98139..101242
                     /estimated_length=3104
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    101937..101948
                     /estimated_length=12
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <103892..>105565
                     /locus_tag="Z169_07371"
     mRNA            join(<103892..104383,105332..>105565)
                     /locus_tag="Z169_07371"
                     /product="Methyltransferase-like 7A"
     CDS             join(<103892..104383,105332..>105565)
                     /locus_tag="Z169_07371"
                     /note="GO_function: GO:0008168 - methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /product="Methyltransferase-like 7A"
                     /protein_id="KFP21929.1"
                     /db_xref="InterPro:IPR013216"
                     /db_xref="UniProtKB/Swiss-Prot:Q9H8H3"
                     /translation="TILFFRACLAALAMPIYLLSFLGIWEPFCKKVFFPFFLEKLSAV
                     YERKTKKQKQELFRNLPDFTSPSGELKLLEIGTGCGTNFQFYPPGCKVTCTDINPNFQ
                     QGLSRSMNKNQHIHYEHFLVAAGEDLHQVPSGSVDAVICTLVLCSVQNVNGTLKEVLR
                     VLRPGGAFYFLEHVAADHSSWKYFWQQICYPTWKLVFAGCCLTREIWKNLEEANFSEL
                     KLQHISVALPWTPIQPHVIGYAVK"
     gene            complement(105373..105540)
                     /locus_tag="Z169_07372"
                     /pseudo
     assembly_gap    105964..106390
                     /estimated_length=427
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    107117..107135
                     /estimated_length=19
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <107138..>112182
                     /locus_tag="Z169_07373"
     mRNA            join(<107138..107247,108795..109066,110319..110461,
                     112039..>112182)
                     /locus_tag="Z169_07373"
                     /product="Transmembrane protease serine 12"
     CDS             join(<107138..107247,108795..109066,110319..110461,
                     112039..>112182)
                     /locus_tag="Z169_07373"
                     /note="GO_function: GO:0003824 - catalytic activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /product="Transmembrane protease serine 12"
                     /protein_id="KFP21930.1"
                     /db_xref="InterPro:IPR001254"
                     /db_xref="InterPro:IPR001314"
                     /db_xref="InterPro:IPR009003"
                     /db_xref="UniProtKB/Swiss-Prot:Q3V0Q7"
                     /translation="VSLQIHQAGVQFAHVCGGVLVNENSILTAGHCVTGREDPYSWRA
                     VLGVHNLWKHGKHAAKRNIKSITVHPGFKRETFENDIALFELDSAVRYSDYIQPICLP
                     PAHLHPDTDNETECFVSGWGRTAEKGKTSATLKEAQVEIIPFSICNGSDAYGGVVNNN
                     MICAGSPSGGTDTCQGDSGGPLACIHPSTNKYYLMGIASFGVGCGRPKYPGIYVRLSQ
                     YGRWV"
     assembly_gap    111195..111240
                     /estimated_length=46
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<115904..>123395)
                     /locus_tag="Z169_07374"
     mRNA            complement(join(<115904..116048,116397..116556,
                     116659..116838,117668..117798,119340..119440,
                     121232..121360,123285..>123395))
                     /locus_tag="Z169_07374"
                     /product="Cyclic AMP-dependent transcription factor ATF-1"
     CDS             complement(join(115904..116048,116397..116556,
                     116659..116838,117668..117798,119340..119440,
                     121232..121360,123285..123395))
                     /locus_tag="Z169_07374"
                     /note="GO_component: GO:0005634 - nucleus [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - sequence-specific DNA binding
                     transcription factor activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of transcription,
                     DNA-dependent [Evidence IEA]"
                     /codon_start=1
                     /product="Cyclic AMP-dependent transcription factor ATF-1"
                     /protein_id="KFP21931.1"
                     /db_xref="InterPro:IPR001630"
                     /db_xref="InterPro:IPR003102"
                     /db_xref="InterPro:IPR004827"
                     /db_xref="InterPro:IPR011616"
                     /db_xref="UniProtKB/Swiss-Prot:Q08DA8"
                     /translation="MEEVHKSSSNSSVTPSQTSAVQGTTLQAAQLSHIAQQMSLRGPA
                     PLTVVQLPGEQVQVQGVIQTAQSSSVIHSPQVQTVQVSSLSESEDSQDSSDSIGSSQK
                     ARGILARRPSYRKILKDLSSEDTRDRKGDEESPGVSTVTSMSVPTPIYQTSTGQYIAI
                     AANGLQLASPGTDGVQGLQTLTMTNAGGTQPGTTILQYAQTSDGQQILVPSNQVVVQT
                     ASGDMQTYQIRSTPTTTSLPQTVVMTSPVTLTSQTSKTDDPQLKREIRLMKNREAARE
                     CRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYCHKSV"
     assembly_gap    127889..128592
                     /estimated_length=704
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(134149..163075)
                     /locus_tag="Z169_07375"
                     /note="Disco-interacting protein 2 B; contains frameshift"
     assembly_gap    153024..153073
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    167927..168010
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    200615..201562
                     /estimated_length=948
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<209069..>222702)
                     /locus_tag="Z169_07376"
     mRNA            complement(join(<209069..209401,209608..209779,
                     210031..210152,210746..210904,211105..211153,
                     211961..212194,215840..215943,216439..216648,
                     217302..217355,217751..217861,218896..218999,
                     219753..219889,220435..220510,220856..221014,
                     222549..>222702))
                     /locus_tag="Z169_07376"
                     /product="La-related protein 4"
     CDS             complement(join(<209069..209401,209608..209779,
                     210031..210152,210746..210904,211105..211153,
                     211961..212194,215840..215943,216439..216648,
                     217302..217355,217751..217861,218896..218999,
                     219753..219889,220435..220510,220856..221014,
                     222549..>222702))
                     /locus_tag="Z169_07376"
                     /codon_start=1
                     /product="La-related protein 4"
                     /protein_id="KFP21932.1"
                     /db_xref="InterPro:IPR006630"
                     /db_xref="UniProtKB/Swiss-Prot:Q71RC2"
                     /translation="LQQVTSKGAGLNPNAKVWQEVPQGSGEAVPPTNGAEHSWQETAA
                     AQGTHTEGNIEISEDSCKQYEVMYSPSCEATRNGTGVDEASANGIVLATEDLGYQIYE
                     VSGEGSSTVSTEDIRECLKKQLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGI
                     KKLTTDMDLILEVLRSSPMVQVDERGEKVRPNHKRCIIILREIPETTPIEEVKALFKN
                     ENCPKVISCEFAHNNNWYVTFQSDTDAQQAFKYLREEVKTFQGKPVMARIKAINTFFA
                     KNGYRVVDSSVYTQPVQTQAQFASPLFMQPVYSPQQYSIYSIVPQTWSPNPAPYFETP
                     LAPFPNGGFVNGFNTPGSYKTNAASLSIGRPFHRNRVKPHFRSSNSSEHAVEGPAAVS
                     TMPVGDGPLNRTNSRNFVMERHNSTLTGHQDQGYSQKDSPTAQMEQNGDYGIGRGRRN
                     VFRGRRRREDDRVSRPQPSAETKTQTPKFDLLASNFPPLPGSTAKIPGEPVLESRMSD
                     IVKGVCKEKESKDLLPSCPAPAQEEQAHSAVQEPVASVSSPSETEAVVVSSTGQPESK
                     PEEVSAQKDVTGHASPPVSVSPVSAAKPPRTNTTSPSTNASAAPALLMQEPRKLSYAE
                     VCQKPPKEPPPVPVQPLREHRTNIVPPAKAEENGTPEKASEKAQDKAEGRMKDYSGFR
                     GNGPPRGAAGKIREQRRQFGRRSSPQGAPRRIGKEQYVPPRSPK"
     assembly_gap    227563..232360
                     /estimated_length=4798
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    233330..233556
                     /estimated_length=227
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    243714..245244
                     /estimated_length=1531
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <248332..>275346
                     /locus_tag="Z169_07377"
     mRNA            join(<248332..248468,251113..251158,253223..253681,
                     263345..263453,264788..264912,267320..267427,
                     269630..269687,270383..270498,273794..273927,
                     274347..>275346)
                     /locus_tag="Z169_07377"
                     /product="LIM domain and actin-binding protein 1"
     CDS             join(<248332..248468,251113..251158,253223..253681,
                     263345..263453,264788..264912,267320..267427,
                     269630..269687,270383..270498,273794..273927,
                     274347..>275346)
                     /locus_tag="Z169_07377"
                     /note="GO_function: GO:0008270 - zinc ion binding
                     [Evidence IEA]"
                     /codon_start=1
                     /product="LIM domain and actin-binding protein 1"
                     /protein_id="KFP21933.1"
                     /db_xref="InterPro:IPR001781"
                     /db_xref="UniProtKB/Swiss-Prot:Q9UHB6"
                     /translation="GICGDKMEPSPFNRRQWTSQSLRITAKELSLVNKNKSSALAERF
                     SKYQKAAEEATAEKKRSNTENLPPHFKRGNLSVLKKKWENPVLGTESQKETLPSSCAE
                     VRHQVASPGLGVGSSPASSPDVEQTLGAGATSDAQAPSSTPGQLQCPGGDSRKFQSHS
                     PESGKMENCLRESREVEKPEASENTDSPGKIEKYSVPLNKLKMMFEKGEATQTKVARD
                     QRKTAVGRRISENSLSSEDFDIGQGEKSHSTSDRAETKKILEMPRLTETSIKDRLAKY
                     QAAVSKQGSSTGLVTTNEIQASESELKNYKSEQKENMPPSLEDSISYQDGEKVSVGEN
                     SLSFHSGLLEDGNVGQNSESKTEVQKAVSTKQQNFGSKSAGQTDASLPKAVKKFQLPM
                     KETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGTIYCKPHFNQ
                     LFKSKGNYDEGFGHKQHKELWAGKTECEESLEKTVPGVNATESPQSPGVEDAPIAKVG
                     VLAASMEAKASALPEREERPAETKKLRIAWPPPSDQSVQGSALDEGIKVFKPKWPPEE
                     EISKSDVLEDVDLDLKKLRRSSSLKERSRPFTVAASFRTMSVKGHKTENSSSPPKAER
                     DMLKRSEEPEREVMVDKKQKEKKVENRNIQSAEEINVEEERELSGIKTVEHNFVENGQ
                     VNAETDEEEHAMEEQEIPNEEFLEPNSPKHSSLANVVTAKESSPNQNRKSQDVGFWEG
                     EDMEDLSVEEQIKRNRYYEEDDEE"
     gene            <284665..>293447
                     /locus_tag="Z169_07378"
     mRNA            join(<284665..284772,286906..287036,288028..288085,
                     288718..288768,289447..289539,290903..291031,
                     291317..291423,293288..>293447)
                     /locus_tag="Z169_07378"
                     /product="Ceramide synthase 5"
     CDS             join(<284665..284772,286906..287036,288028..288085,
                     288718..288768,289447..289539,290903..291031,
                     291317..291423,293288..>293447)
                     /locus_tag="Z169_07378"
                     /note="GO_component: GO:0016021 - integral to membrane
                     [Evidence IEA];
                     GO_function: GO:0003700 - sequence-specific DNA binding
                     transcription factor activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of transcription,
                     DNA-dependent [Evidence IEA]"
                     /codon_start=1
                     /product="Ceramide synthase 5"
                     /protein_id="KFP21934.1"
                     /db_xref="InterPro:IPR001356"
                     /db_xref="InterPro:IPR006634"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="UniProtKB/Swiss-Prot:Q8N5B7"
                     /translation="RFIAKPCAINLGIQDSGPHRAQPNAILEKVFTSITKSPGGKRLE
                     GLSKQLDWDVRKIQRWFRHRRNQDKPTTLTKFCESMWRFTFYLSIFFYGIRFLWTAPW
                     FWDTRQCWYNYPFQPLTSRLYYYYILELAFYWSLMFSQFTDIKRKDFLIMFVHHLATI
                     GLITFSYMNNMVRVGTLVLCLHDASDFLLEAAKLANYAKYQRLCDAFFMLFGVVFIVT
                     RLGIYPFWILNTTLFESWELIGPYPSWWLFNGLLITLQILHIIWSYLIIRTAYKALVR
                     GKV"
     assembly_gap    297912..298368
                     /estimated_length=457
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<301254..>305685)
                     /locus_tag="Z169_07379"
     mRNA            complement(join(<301254..301344,301625..301731,
                     301921..302154,302477..302589,303501..303639,
                     304015..304155,305273..305450,305645..>305685))
                     /locus_tag="Z169_07379"
                     /product="Glycerol-3-phosphate dehydrogenase [NAD(+)],
                     cytoplasmic"
     CDS             complement(join(<301254..301344,301625..301731,
                     301921..302154,302477..302589,303501..303639,
                     304015..304155,305273..305450,305645..305685))
                     /locus_tag="Z169_07379"
                     /note="GO_component: GO:0005737 - cytoplasm [Evidence
                     IEA];
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004367 - glycerol-3-phosphate
                     dehydrogenase [NAD+] activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006072 - glycerol-3-phosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0046168 - glycerol-3-phosphate catabolic
                     process [Evidence IEA];
                     GO_process: GO:0055114 - oxidation-reduction process
                     [Evidence IEA]"
                     /codon_start=1
                     /product="Glycerol-3-phosphate dehydrogenase [NAD(+)],
                     cytoplasmic"
                     /protein_id="KFP21935.1"
                     /db_xref="InterPro:IPR006109"
                     /db_xref="InterPro:IPR006168"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR011128"
                     /db_xref="UniProtKB/Swiss-Prot:P13707"
                     /translation="MGGKKVCVVGSGNWGSAIAKIAGSNAARLSTFENQVNMWVLEEE
                     VGGRRLTEIINTEHENVKYLPGHKLPPNVVAEPDLLKACAGADVLLFVVPHQFIGKVC
                     DQLKGHVKKDAVGVSLIKGVDEGPDGLRLISDIIHEKLGIEMSVLMGANIANEVAEEK
                     FCETTIGCKNMQHGQTLKELMQTPNFRVTVVQEADTVEICGALKNVVAVGAGFCDGLG
                     YGDNTKAAVIRLGLMEMIGFAKLFCKGPVTSSTFLESCGVADLITTCYGGRNRKVAEA
                     FAKTGKSIEQLEKEMLNGQKLQGPQTSAELHRILKSKNAVEKFPLFTAVYQICYEGKP
                     VADVIKCLQNHPEH"
     assembly_gap    304403..304504
                     /estimated_length=102
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    305721..305780
                     /estimated_length=60
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<308264..>312050)
                     /locus_tag="Z169_07380"
     mRNA            complement(join(<308264..308314,308523..308624,
                     308857..308979,309321..309456,309879..309976,
                     310085..310246,310331..310432,310757..310873,
                     311360..311482,311784..311906,312003..>312050))
                     /locus_tag="Z169_07380"
                     /product="SWI/SNF-related matrix-associated
                     actin-dependent regulator of chromatin subfamily D member
                     1"
     CDS             complement(join(<308264..308314,308523..308624,
                     308857..308979,309321..309456,309879..309976,
                     310085..310246,310331..310432,310757..310873,
                     311360..311482,311784..311906,312003..>312050))
                     /locus_tag="Z169_07380"
                     /note="GO_function: GO:0005515 - protein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /product="SWI/SNF-related matrix-associated
                     actin-dependent regulator of chromatin subfamily D member
                     1"
                     /protein_id="KFP21936.1"
                     /db_xref="InterPro:IPR003121"
                     /db_xref="InterPro:IPR019835"
                     /db_xref="UniProtKB/Swiss-Prot:Q96GM5"
                     /translation="NSAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRK
                     RLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALS
                     KYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV
                     RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREYVI
                     CDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEV
                     DDTLKTQMNSFLLSTASQQEIAALDNKIHETIETINQLKTQREFMLSFARDPQGFIND
                     WLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGI
                     RNT"
     assembly_gap    313299..316848
                     /estimated_length=3550
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    319236..320305
                     /estimated_length=1070
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    322542..323322
                     /estimated_length=781
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<323842..>341519)
                     /locus_tag="Z169_07381"
     mRNA            complement(join(<323842..323946,324161..324265,
                     324393..324472,324723..324814,324900..325053,
                     325136..325192,325284..325434,325660..325831,
                     326286..326404,339874..340069,341155..>341519))
                     /locus_tag="Z169_07381"
                     /product="Acid-sensing ion channel 1"
     CDS             complement(join(323842..323946,324161..324265,
                     324393..324472,324723..324814,324900..325053,
                     325136..325192,325284..325434,325660..325831,
                     326286..326404,339874..340069,341155..341519))
                     /locus_tag="Z169_07381"
                     /note="GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005272 - sodium channel activity
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Acid-sensing ion channel 1"
                     /protein_id="KFP21937.1"
                     /db_xref="InterPro:IPR001873"
                     /db_xref="UniProtKB/Swiss-Prot:Q1XA76"
                     /translation="MMDLKVDEEEVDSGQPVSIQAFASSSTLHGLSHIFSYERLSLKR
                     VVWALCFLGSLALLALVCTNRIQYYFLYPHVTKLDEVAATRLTFPAVTFCNLNEFRFS
                     RVTKNDLYHAGELLALLNNRYEIPDTQTADEKQLEILQDKANFRNFKPKPFNMLEFYD
                     RAGHDIREMLLSCFFRGEQCTPEDFKVVFTRYGKCYTFNAGQDGKPRLITMKGGTGNG
                     LEIMLDIQQAGDSAVLTPLLSAADETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQT
                     FVSCQEQRLIYLPPPWGDCKAVAGDSEFYVTYSITACRIDCETRYLVENCNCRMVHMP
                     GDAPYCTPEQYKECADPALDFLVEKDNEYCVCEMPCNVTRYGKELSMVKIPSKASAKY
                     LAKKYNKSEQYIGENILVLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASI
                     LTVLELFDYAYEVIKHRLCRRGKCRKNHKRNNTDKGVALSMDDVKRHNPCESIRGHPA
                     GMTYAANILPHHPARGTFEDFTC"
     assembly_gap    326219..326283
                     /estimated_length=65
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    328168..328289
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    330276..330473
                     /estimated_length=198
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    339486..339500
                     /estimated_length=15
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    341582..343046
                     /estimated_length=1465
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    348198..348221
                     /estimated_length=24
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    357313..357456
                     /estimated_length=144
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <358920..>365262
                     /locus_tag="Z169_07382"
     mRNA            join(<358920..359004,359472..359674,360042..360178,
                     360383..360452,360671..360724,361479..361556,
                     361687..361804,361994..362124,362359..362523,
                     362939..363034,363278..363476,363768..363873,
                     364067..364203,364359..364490,364759..364867,
                     365187..>365262)
                     /locus_tag="Z169_07382"
                     /product="Rac GTPase-activating protein 1"
     CDS             join(358920..359004,359472..359674,360042..360178,
                     360383..360452,360671..360724,361479..361556,
                     361687..361804,361994..362124,362359..362523,
                     362939..363034,363278..363476,363768..363873,
                     364067..364203,364359..364490,364759..364867,
                     365187..365262)
                     /locus_tag="Z169_07382"
                     /note="GO_component: GO:0005622 - intracellular [Evidence
                     IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /product="Rac GTPase-activating protein 1"
                     /protein_id="KFP21938.1"
                     /db_xref="InterPro:IPR000198"
                     /db_xref="InterPro:IPR002219"
                     /db_xref="InterPro:IPR008936"
                     /db_xref="UniProtKB/Swiss-Prot:Q9H0H5"
                     /translation="METAMLNLRSLYNQIIRQAEVLSEGSECQFIQLAKNFEEYRRKL
                     QKTEHELGRYKDLLMKTEAERSALDVKLKHARNQVDVEIKRRQKAETDCEKLERQIQL
                     IRELLMCDASGSIQLSEEQKSALAFLNRPQVSIGGSGNKRLSTIDESGSILSDISFDK
                     TDESLDWDSSVVKAVRLKRREKRRSSRQFIEGPPGPQKKTRSIGSTVDQGNESIVAKT
                     TLMVPNDGGPIEAISTIQTVPYSLRSCRKSGPLQPWSSESSIGSKQLESKSETDGSGT
                     PQNNGGVRLHEFVSKTVIKPESCVPCGKRVKFGKISLKCRDCRVVAHPECRDRCPLPC
                     IPTLTGTPVRIGEGTLMDFVPSTPPMIPSIIVHCVNEIEQRGLHEMGLYRVSGCDKTV
                     RELKEKFLRAKNIPLLSKVDDIHAICGLLKDFLRSLKEPLLTFRLNKTFMEAAEISDE
                     DNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPATKMDITNLAKVFGPTIVAHAV
                     PDPDPMTLLQDTKRQPKVVERLLLLPMDYWSQLMMVEQENIDPAHVIENVNAYSTPQT
                     PDVKVSLLGPLTTPEQQLSKTPSSSSLSQRVRSTFSKTTPKFGSKSKSTTQLGHQGNF
                     FASPMLK"
     assembly_gap    363491..363500
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    385223..385270
                     /estimated_length=48
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    391780..392192
                     /estimated_length=413
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    397899..397963
                     /estimated_length=65
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    399625..399834
                     /estimated_length=210
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    401468..410718
                     /estimated_length=9251
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    416985..417109
                     /estimated_length=125
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    417479..417939
                     /estimated_length=461
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(JJRC01083647.1:1..253,gap(38),JJRC01083648.1:1..2189,gap(498),
            JJRC01083649.1:1..3171,gap(1042),JJRC01083650.1:1..994,gap(473),
            JJRC01083651.1:1..456,gap(47),JJRC01083652.1:1..996,gap(263),
            JJRC01083653.1:1..2225,gap(39),JJRC01083654.1:1..506,gap(252),
            JJRC01083655.1:1..2093,gap(487),JJRC01083656.1:1..467,gap(30),
            JJRC01083657.1:1..1555,gap(2826),JJRC01083658.1:1..528,gap(2913),
            JJRC01083659.1:1..5718,gap(18),JJRC01083660.1:1..26583,gap(252),
            JJRC01083661.1:1..9065,gap(374),JJRC01083662.1:1..8757,gap(454),
            JJRC01083663.1:1..5574,gap(193),JJRC01083664.1:1..1574,gap(203),
            JJRC01083665.1:1..2417,gap(1335),JJRC01083666.1:1..2518,gap(336),
            JJRC01083667.1:1..1447,gap(750),JJRC01083668.1:1..1224,gap(69),
            JJRC01083669.1:1..949,gap(1391),JJRC01083670.1:1..371,gap(449),
            JJRC01083671.1:1..1776,gap(3104),JJRC01083672.1:1..694,gap(12),
            JJRC01083673.1:1..4015,gap(427),JJRC01083674.1:1..726,gap(19),
            JJRC01083675.1:1..4059,gap(46),JJRC01083676.1:1..16648,gap(704),
            JJRC01083677.1:1..24431,gap(50),JJRC01083678.1:1..14853,gap(84),
            JJRC01083679.1:1..32604,gap(948),JJRC01083680.1:1..26000,gap(4798),
            JJRC01083681.1:1..969,gap(227),JJRC01083682.1:1..10157,gap(1531),
            JJRC01083683.1:1..52667,gap(457),JJRC01083684.1:1..6034,gap(102),
            JJRC01083685.1:1..1216,gap(60),JJRC01083686.1:1..7518,gap(3550),
            JJRC01083687.1:1..2387,gap(1070),JJRC01083688.1:1..2236,gap(781),
            JJRC01083689.1:1..2896,gap(65),JJRC01083690.1:1..1884,gap(122),
            JJRC01083691.1:1..1986,gap(198),JJRC01083692.1:1..9012,gap(15),
            JJRC01083693.1:1..2081,gap(1465),JJRC01083694.1:1..5151,gap(24),
            JJRC01083695.1:1..9091,gap(144),JJRC01083696.1:1..6034,gap(10),
            JJRC01083697.1:1..21722,gap(48),JJRC01083698.1:1..6509,gap(413),
            JJRC01083699.1:1..5706,gap(65),JJRC01083700.1:1..1661,gap(210),
            JJRC01083701.1:1..1633,gap(9251),JJRC01083702.1:1..6266,gap(125),
            JJRC01083703.1:1..369,gap(461),JJRC01083704.1:1..802)
//