LOCUS       KE666676              234798 bp    DNA     linear   CON 22-MAR-2015
DEFINITION  Cricetulus griseus strain 17A/GY chromosome 1 unlocalized genomic
            scaffold chr1_scaffold_534, whole genome shotgun sequence.
ACCESSION   KE666676 APMK01000000
VERSION     KE666676.1
DBLINK      BioProject: PRJNA189319
            BioSample: SAMN02981520
KEYWORDS    WGS.
SOURCE      Cricetulus griseus (Chinese hamster)
  ORGANISM  Cricetulus griseus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Cricetinae; Cricetulus.
REFERENCE   1  (bases 1 to 234798)
  AUTHORS   Brinkrolf,K., Rupp,O., Laux,H., Kollin,F., Ernst,W., Linke,B.,
            Kofler,R., Romand,S., Hesse,F., Budach,W.E., Galosy,S., Muller,D.,
            Noll,T., Wienberg,J., Jostock,T., Leonard,M., Grillari,J.,
            Tauch,A., Goesmann,A., Helk,B., Mott,J.E., Puehler,A. and Borth,N.
  TITLE     Chinese hamster genome sequenced from sorted chromosomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 234798)
  AUTHORS   Brinkrolf,K., Rupp,O., Laux,H., Ernst,W., Kollin,F., Kofler,R.,
            Linke,B., Budach,W.E., Hesse,F., Galosy,S., Noll,T., Wienberg,J.,
            Jostock,T., Leonard,M., Grillari,J., Tauch,A., Goesmann,A.,
            Helk,B., Mott,J.E., Puehler,A. and Borth,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2013) CeBiTec, Bielefeld University,
            Universitaetsstrasse 27, Bielefeld, NRW 33615, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: ALLPATHS-LG v. 41879
            Assembly Name         :: Cgr1.0
            Long Assembly Name    :: Cricetulus griseus 1.0
            Genome Coverage       :: 70.0x
            Sequencing Technology :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..234798
                     /organism="Cricetulus griseus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="chr1_scaffold_534"
                     /strain="17A/GY"
                     /db_xref="taxon:10029"
                     /chromosome="1"
                     /map="unlocalized"
     assembly_gap    5991..5991
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    9651..9720
                     /estimated_length=70
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    12964..13406
                     /estimated_length=443
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    15335..16912
                     /estimated_length=1578
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(19276..101145)
                     /locus_tag="H671_1g3489"
     mRNA            complement(join(19276..22297,28274..28580,35426..35603,
                     36943..37092,38957..39053,39810..39913,41761..41884,
                     73523..73567,79749..79848,83566..83691,92909..93024,
                     96446..96572,100667..101145))
                     /locus_tag="H671_1g3489"
                     /product="cystine/glutamate transporter"
                     /note="transcript variant A; alternatively spliced"
     mRNA            complement(join(19276..22404,35426..35603,36943..37092,
                     38957..39053,39810..39913,41761..41884,73523..73567,
                     79749..79848,83566..83691,92909..93024,96446..96572,
                     99280..99369,100667..101145))
                     /locus_tag="H671_1g3489"
                     /product="cystine/glutamate transporter"
                     /note="transcript variant D; alternatively spliced"
     mRNA            complement(join(19276..22297,28274..28580,35426..35603,
                     36943..37092,38957..39053,39810..39913,41761..41884,
                     73523..73567,79749..79848,83566..83691,92909..93061,
                     95034..95062,96446..96572,99280..99369,100667..101145))
                     /locus_tag="H671_1g3489"
                     /product="cystine/glutamate transporter"
                     /note="transcript variant B; alternatively spliced"
     mRNA            complement(join(19276..22297,28274..28580,35426..35603,
                     36943..37092,38957..39053,39810..39913,41761..41884,
                     73523..73567,79749..79848,83566..83691,92909..93061,
                     95034..95062,96446..96572,99280..99369,100667..101145))
                     /locus_tag="H671_1g3489"
                     /product="cystine/glutamate transporter"
                     /note="transcript variant E; alternatively spliced"
     mRNA            complement(join(19276..22404,35426..35603,38957..39053,
                     39810..39913,41761..41884,73523..73567,79749..79848,
                     83566..83691,92909..93024,100099..100150,100667..101145))
                     /locus_tag="H671_1g3489"
                     /product="cystine/glutamate transporter"
                     /note="transcript variant C; alternatively spliced"
     CDS             complement(join(22337..22404,35426..35603,38957..39053,
                     39810..39913,41761..41884,73523..73567,79749..79848,
                     83566..83691,92909..93024,100099..100150,100667..100943))
                     /locus_tag="H671_1g3489"
                     /note="encoded by transcript variant C; alternatively
                     spliced;
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015171 - amino acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /product="cystine/glutamate transporter"
                     /protein_id="ERE87834.1"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004841"
                     /translation="MVRKPVVTTISKGGYLQGNVSGRLPSMGDQEAPGQEKVVLKKKI
                     TLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSLVFWSACGVLSLFVCFHKSLERQ
                     VFDVIRALPGATAVISLAFGRYILEPFFIQCEIPELAIKLVTAVGITVVMVLNSMSVS
                     WSARIQIFLTFCKLTAILIIIVPGVIQLIKGHTQHFEDAFSGRDANLMGLPLAFYYGM
                     YAYAGWFYLNFITEEVENPEKNIPLAICISMAIITVGYVLTNVAYFTTISAEELLLSN
                     AVAVTFSERLLGNFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIH
                     VHKHTPLPAVIVLVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLF
                     IVWDKKPKWFRQLSVEKYFIEIKQEPTTLFAMDECL"
     CDS             complement(join(22337..22404,35426..35603,36943..37092,
                     38957..39053,39810..39913,41761..41884,73523..73567,
                     79749..79848,83566..83691,92909..93024,96446..96572,
                     99280..99369,100667..100865))
                     /locus_tag="H671_1g3489"
                     /note="encoded by transcript variant D; alternatively
                     spliced;
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015171 - amino acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /product="cystine/glutamate transporter"
                     /protein_id="ERE87835.1"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004841"
                     /translation="MGDQEAPGQEKVVLKKKITLLRGVSIIIGTVIGSGIFISPKGIL
                     QNTGSVGMSLVFWSACGVLSLFVLFIVWSNAVIESSSRIFTIVNIKVVLAYAGALSYA
                     ELGTSIKKSGGHYTYILEVFGPLLAFVRVWVELLIIRPGATAVISLAFGRYILEPFFI
                     QCEIPELAIKLVTAVGITVVMVLNSMSVSWSARIQIFLTFCKLTAILIIIVPGVIQLI
                     KGHTQHFEDAFSGRDANLMGLPLAFYYGMYAYAGWFYLNFITEEVENPEKNIPLAICI
                     SMAIITVGYVLTNVAYFTTISAEELLLSNAVAVTFSERLLGNFSLAVPIFVALSCFGS
                     MNGGVFAVSRLFYVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSL
                     LNFLSFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFTCLFMVVLSLYSD
                     PFSTGVGFLITLTGVPAYYLFIVWDKKPKWFRQLSVEKYFIEIKQEPTTLFAMDECL"
     assembly_gap    27635..27929
                     /estimated_length=295
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     CDS             complement(join(28516..28580,35426..35603,36943..37092,
                     38957..39053,39810..39913,41761..41884,73523..73567,
                     79749..79848,83566..83691,92909..93024,96446..96572,
                     100667..100943))
                     /locus_tag="H671_1g3489"
                     /note="encoded by transcript variant A; alternatively
                     spliced;
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0016021 - integral to membrane [Evidence
                     IEA];
                     GO_function: GO:0015171 - amino acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /product="cystine/glutamate transporter"
                     /protein_id="ERE87832.1"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004760"
                     /db_xref="InterPro:IPR004841"
                     /translation="MVRKPVVTTISKGGYLQGNVSGRLPSMGDQEAPGQEKVVLKKKI
                     TLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSLVFWSACGVLSLFGALSYAELGT
                     SIKKSGGHYTYILEVFGPLLAFVRVWVELLIIRPGATAVISLAFGRYILEPFFIQCEI
                     PELAIKLVTAVGITVVMVLNSMSVSWSARIQIFLTFCKLTAILIIIVPGVIQLIKGHT
                     QHFEDAFSGRDANLMGLPLAFYYGMYAYAGWFYLNFITEEVENPEKNIPLAICISMAI
                     ITVGYVLTNVAYFTTISAEELLLSNAVAVTFSERLLGNFSLAVPIFVALSCFGSMNGG
                     VFAVSRLFYVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFL
                     SFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFTCLFMVVLSLYSDPFST
                     GVGFLITLTGVPAYYLFIVWDKKPKWFRQLSERITRTLQIILEVVPEDSKEL"
     CDS             complement(join(28516..28580,35426..35603,36943..37092,
                     38957..39053,39810..39913,41761..41884,73523..73567,
                     79749..79848,83566..83691,92909..93061,95034..95062,
                     96446..96572,99280..99369,100667..100943))
                     /locus_tag="H671_1g3489"
                     /note="encoded by transcript variant B; alternatively
                     spliced;
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015171 - amino acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /product="cystine/glutamate transporter"
                     /protein_id="ERE87833.1"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004841"
                     /translation="MVRKPVVTTISKGGYLQGNVSGRLPSMGDQEAPGQEKVVLKKKI
                     TLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSLVFWSACGVLSLFVLFIVWSNAV
                     IESSSRIFTIVNIKVVLAYAGALSYAELGTSIKKSGGHYTYILEVFGPLLAFVRVWVE
                     LLIIRYLCCIFPISMLPEVNLNTLFLSPGATAVISLAFGRYILEPFFIQCEIPELAIK
                     LVTAVGITVVMVLNSMSVSWSARIQIFLTFCKLTAILIIIVPGVIQLIKGHTQHFEDA
                     FSGRDANLMGLPLAFYYGMYAYAGWFYLNFITEEVENPEKNIPLAICISMAIITVGYV
                     LTNVAYFTTISAEELLLSNAVAVTFSERLLGNFSLAVPIFVALSCFGSMNGGVFAVSR
                     LFYVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWL
                     FMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLI
                     TLTGVPAYYLFIVWDKKPKWFRQLSERITRTLQIILEVVPEDSKEL"
     CDS             complement(join(28516..28580,35426..35603,36943..37092,
                     38957..39053,39810..39913,41761..41884,73523..73567,
                     79749..79848,83566..83691,92909..93061,95034..95062,
                     96446..96572,99280..99369,100667..100865))
                     /locus_tag="H671_1g3489"
                     /note="encoded by transcript variant E; alternatively
                     spliced;
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015171 - amino acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /product="cystine/glutamate transporter"
                     /protein_id="ERE87836.1"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004841"
                     /translation="MGDQEAPGQEKVVLKKKITLLRGVSIIIGTVIGSGIFISPKGIL
                     QNTGSVGMSLVFWSACGVLSLFVLFIVWSNAVIESSSRIFTIVNIKVVLAYAGALSYA
                     ELGTSIKKSGGHYTYILEVFGPLLAFVRVWVELLIIRYLCCIFPISMLPEVNLNTLFL
                     SPGATAVISLAFGRYILEPFFIQCEIPELAIKLVTAVGITVVMVLNSMSVSWSARIQI
                     FLTFCKLTAILIIIVPGVIQLIKGHTQHFEDAFSGRDANLMGLPLAFYYGMYAYAGWF
                     YLNFITEEVENPEKNIPLAICISMAIITVGYVLTNVAYFTTISAEELLLSNAVAVTFS
                     ERLLGNFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHVHKHTPL
                     PAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHRPFKVP
                     LFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLFIVWDKKPKWFRQLSE
                     RITRTLQIILEVVPEDSKEL"
     assembly_gap    53320..53332
                     /estimated_length=13
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    59814..60846
                     /estimated_length=1033
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    77285..77389
                     /estimated_length=105
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    81171..81381
                     /estimated_length=211
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    105515..105710
                     /estimated_length=196
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    137803..138112
                     /estimated_length=310
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    139732..140647
                     /estimated_length=916
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    141307..142641
                     /estimated_length=1335
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    144821..145205
                     /estimated_length=385
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    158588..158890
                     /estimated_length=303
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    160140..160783
                     /estimated_length=644
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    161204..163222
                     /estimated_length=2019
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    163644..165066
                     /estimated_length=1423
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    171012..171012
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    193829..193843
                     /estimated_length=15
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    195403..195599
                     /estimated_length=197
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    218457..218567
                     /estimated_length=111
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    225696..226399
                     /estimated_length=704
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(APMK01093290.1:1..5990,gap(1),APMK01234440.1:1..3659,gap(70),
            APMK01174970.1:1..3243,gap(443),APMK01046951.1:1..1928,gap(1578),
            APMK01041752.1:1..10722,gap(295),APMK01199845.1:1..25390,gap(13),
            APMK01202787.1:1..6481,gap(1033),APMK01300169.1:1..16438,gap(105),
            APMK01184464.1:1..3781,gap(211),APMK01169964.1:1..24133,gap(196),
            APMK01179731.1:1..32092,gap(310),APMK01117369.1:1..1619,gap(916),
            APMK01139370.1:1..659,gap(1335),APMK01186217.1:1..2179,gap(385),
            APMK01150949.1:1..13382,gap(303),APMK01287892.1:1..1249,gap(644),
            APMK01249383.1:1..420,gap(2019),APMK01059843.1:1..421,gap(1423),
            APMK01063385.1:1..5945,gap(1),APMK01239850.1:1..22816,gap(15),
            APMK01307034.1:1..1559,gap(197),APMK01080237.1:1..22857,gap(111),
            APMK01012960.1:1..7128,gap(704),APMK01052388.1:1..8399)
//