LOCUS KE561212 25404 bp DNA linear CON 30-JUN-2014 DEFINITION Rozella allomycis CSF55 unplaced genomic scaffold scaffold_4373, whole genome shotgun sequence. ACCESSION KE561212 ATJD01000000 VERSION KE561212.1 DBLINK BioProject: PRJNA81749 BioSample: SAMN01940551 KEYWORDS WGS. SOURCE Rozella allomycis CSF55 ORGANISM Rozella allomycis CSF55 Eukaryota; Fungi; Fungi incertae sedis; Cryptomycota; Cryptomycota incertae sedis; Rozella. REFERENCE 1 (bases 1 to 25404) AUTHORS James,T.Y., Pelin,A., Bonen,L., Ahrendt,S., Sain,D., Corradi,N. and Stajich,J.E. TITLE Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia JOURNAL Curr. Biol. 23 (16), 1548-1553 (2013) PUBMED 23932404 REFERENCE 2 (bases 1 to 25404) AUTHORS James,T.Y., Pelin,A., Bonen,L., Ahrendt,S., Sain,D., Corradi,N. and Stajich,J.E. TITLE Direct Submission JOURNAL Submitted (10-JUN-2013) Plant Pathology and Microbiology, University of California, Riverside, 900 University Ave., Riverside, CA 92521, USA COMMENT Annotation was restored to the scaffolds in June 2014. ##Genome-Assembly-Data-START## Assembly Method :: Velvet v. 1.2.03; Celera Assembler v. 7.0 Assembly Name :: Rozella_k41_t100 Long Assembly Name :: Rozella velk41 trim100 vecstrip Genome Coverage :: 400.0x Sequencing Technology :: Illumina HiSeq; PacBio ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..25404 /organism="Rozella allomycis CSF55" /mol_type="genomic DNA" /submitter_seqid="scaffold_4373" /strain="CSF55" /isolation_source="soil" /host="Allomyces sp." /db_xref="taxon:988480" /chromosome="Unknown" /dev_stage="zoospores" /geo_loc_name="USA: MS, Hattiesburg" gene complement(1668..2617) /locus_tag="O9G_004536" mRNA complement(join(1668..2339,2459..2617)) /locus_tag="O9G_004536" /product="Acyl-CoA thioesterase II domain-containing protein" CDS complement(join(1668..2339,2459..2617)) /locus_tag="O9G_004536" /inference="ab initio prediction:Augustus:2.6.1" /note="GO_function: GO:0047617 - acyl-CoA hydrolase activity [Evidence ISS]; GO_process: GO:0006637 - acyl-CoA metabolic process [Evidence ISS]" /codon_start=1 /product="Acyl-CoA thioesterase II domain-containing protein" /protein_id="EPZ31504.1" /db_xref="InterPro:IPR025652" /translation="MDTDNTITVEMMIELEEIDINLYRSVTLWKPLHARGVFGGQVIG QSLNAAMRTVKRLRDGNSYCTRLVIAKQRGRAIYTCELSFHRSEPSIISHQKEMPKVP PPHECFDRKEEFLKLLNDSKTPDKYKRIIEEQITQYSSFEVRVLERMKLEDWTNPMKK PAKKHLWIKIPKKLSSFPRIHQSVAAFVTDFSLLGTAMLPHGITFLSPKLRMLATIDH SVWFHEPFRVDEWFLYEMESPQAGSSRGFSTGRIFTQEGKMVLSCAQEGVFRVIFKRK " gene complement(4331..5550) /locus_tag="O9G_004537" mRNA complement(join(4331..4756,4785..4920,4948..5365, 5394..5550)) /locus_tag="O9G_004537" /product="hypothetical protein" CDS complement(join(4331..4756,4785..4920,4948..5365, 5394..5550)) /locus_tag="O9G_004537" /inference="ab initio prediction:SNAP:2010-07-28" /note="GO_function: GO:0005515 - protein binding [Evidence ISS]" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31505.1" /db_xref="InterPro:IPR003892" /translation="MTTLSFSELEEKHKTGLKTLKELFIEWSDDDLLSLLEDYDGDIQ LIASRITEGYVKPFSKVPVHTKPQSSTAQKGRYAKNTNTYKKEYKDRRKDYRNDQKYK KSYQGKDSSRHYNKKRDGEKKENDVETSEKKEEVKPSSPVVEAHPPMNDDTKVENDEP VVEPNVFPTQETEENQAPVSLKFGSLGLEDEPIGKTSQEQPQPHQYPGMMSFPQNMSF PEYSNPGFYGHQESHFPQMGFYPPSNVPREGSADAPNQQMPMNQFPFQYYYPYYMPGP NQYAPYGQNMYSKAMYYNSGYFPQQPNQAAQNNKVDEKQPANTPFNPMSDRLYAPQQF PFYPMSSFLPHQGDKDKKEQQQDQSFQSGFYQPFQMQMPYNKQN" gene 5820..6498 /locus_tag="O9G_004538" mRNA join(5820..6310,6351..6498) /locus_tag="O9G_004538" /product="hypothetical protein" CDS join(5820..6310,6351..6498) /locus_tag="O9G_004538" /inference="ab initio prediction:SNAP:2010-07-28" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31506.1" /translation="MTEAQKRVMLQVLLQNRSFPDYIISKYNMKVPEINALLSPFHFK VVKFLKFYYLINTHTDDNLKALSYEYNVSDIFALKEIISALQSEQSLCLPEDDIVSYF KSNNITKTAAESRVLVMVNDGWLERLIDEDGAVFYSFGPRTLLELREILEESISSCAG CKHLRFLALALKQCINIAMKKSSDLPEVKKYNVLLVKANSSFIAMSWQVSTE" gene 6559..8749 /locus_tag="O9G_004539" mRNA join(6559..6645,6674..6744,6764..6814,6842..7340, 7370..7750,7777..7928,7958..8108,8166..8324,8351..8473, 8500..8535,8600..8749) /locus_tag="O9G_004539" /product="hypothetical protein" CDS join(6559..6645,6674..6744,6764..6814,6842..7340, 7370..7750,7777..7928,7958..8108,8166..8324,8351..8473, 8500..8535,8600..8749) /locus_tag="O9G_004539" /inference="ab initio prediction:SNAP:2010-07-28" /note="GO_function: GO:0005515 - protein binding [Evidence ISS]" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31507.1" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR017986" /translation="MDLERRKKELEEKRKKLAELKKSRAFSVSSSNSSIAQTPNKQDI DSLVSSLLKSKSKKPEVSQSEINETQRSEENVNEKENFKDKNNAMRNLTIVDAVLFDL PPTEVISYNKEAQTDTFDDIPEIEDFQPQQLETETYNVIISDEKIETSDQPVVEKDIS DQDKQAILNSDSFSNFIDKSSKMVERVLNEPFDYLKDYTMDETVNENIDEYLSVKNKF CNEKVQGRSVNDLDWHPKHHELCLSSYGKKNGFTNNEYGSNGLVCVWNMLLSSTTPEF EFSCQSKVLSAKFAANNNHLIIGGTYSGQIMVWDLRSKARPVLKTPVSTGHAHPIYSI KCVGTQQIVSASSDGTVCVWQMDMLGKPQETLELNSPDPLNNKDISISCMDFPGDDQN TFVVGTEEGSIYRGSLMGRAGNKFGINNEFPLAHSAPVTGIKFHPNKEAQFDTSNVFI TSSFDWTIKLWNYNNNSKNNGINCVRTFGNGFNPIMDVEWHPNKPCVFASVSGNGNLD LWDIQNESQNLVSTLSVNGNPLNKLSWHKNNFIAVGSVDGSTNIVKCSLQNANQKEWN FMQKIPFLLKFGDNFTLIVTFIVFDPIVSNWSRKNVRGNTERVNQLSGTLCKF" gene complement(8612..10594) /locus_tag="O9G_004540" mRNA complement(join(8612..9049,9081..9230,9259..9700, 9729..9999,10027..10272,10301..10322,10349..10594)) /locus_tag="O9G_004540" /product="Acyl-CoA dehydrogenase/oxidase domain-containing protein" CDS complement(join(8612..9049,9081..9230,9259..9700, 9729..9999,10027..10272,10301..10322,10349..10594)) /locus_tag="O9G_004540" /EC_number="1.3.3.6" /inference="ab initio prediction:GenemarkHMM:2.3e" /note="GO_component: GO:0005777 - peroxisome [Evidence ISS]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence ISS]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISS]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence ISS]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence ISS]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence ISS]; GO_process: GO:0008152 - metabolic process [Evidence ISS]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence ISS]; GO_process: GO:0055114 - oxidation-reduction process [Evidence ISS]" /codon_start=1 /product="Acyl-CoA dehydrogenase/oxidase domain-containing protein" /protein_id="EPZ31508.1" /db_xref="InterPro:IPR002655" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /translation="MSSFEVSKLKHLLDHDNHENRRRLREFFRHPLFVPRYDVSMRYE REIAYERLKRIIENKFISIFDFEKNPLNIFAVHELAGQVDGSMATKLTVLFNLFGGSV LRLGSERHRHYLEGIDNLSVVGCFALTELAYGNNAIEMETTAHYDPGTNEFIINTPSA KGQKYWITNSAVHAKHAIVFCQLYVNGVHEGIHAILVRIRNEDWSVCAGVRVEDMGSK IECNGVDNGKLWFNNVRVPSENLLNKYSDIINGKFVSKIKGKRERFLKVADQLLSGRL CIASMMNGASKLSLAVCVKYSATRLAVGPTGKSDTPILDYQLQQRAIIPLIARTICLS LGLDYVKERWCSQTEQDYSQVLRLCCVFKPLVTWNAERVASICRERCGGQGYLQCNQI SSCIGFSHAGITAEGDNAVLMQKVSKELISDVQNGKEKLLPFSKTFDLSLNGLLNLFS ARENFLFNSLSRSIKEKMGQGQSLYEIWMKQESDAIQDLAKAHGERIVIENLVKRVIP TCDSDLKSILNDVGLLYGLNYLENNLGFYLKEEIVSPSNAKAVCDLSRKLTSKLAKCA TQLVDSFGIPSHVLSAPIANDWVKYNESDNQGEIISKL" gene 10791..11057 /locus_tag="O9G_004541" mRNA join(10791..10854,10897..11057) /locus_tag="O9G_004541" /product="hypothetical protein" CDS join(10791..10854,10897..11057) /locus_tag="O9G_004541" /inference="ab initio prediction:SNAP:2010-07-28" /note="GO_component: GO:0005739 - mitochondrion [Evidence ISS]; GO_function: GO:0004857 - enzyme inhibitor activity [Evidence ISS]; GO_process: GO:0045980 - negative regulation of nucleotide metabolic process [Evidence ISS]" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31509.1" /db_xref="InterPro:IPR007648" /translation="MIRNLISRSNRRSIQQLIRGEASSPFGKKEKAAEEMYFRQKDKE KARHILEHPEELETELQQLKSKEKDIKNKK" gene 11740..12100 /locus_tag="O9G_004542" mRNA join(11740..11820,11898..12023,12053..12100) /locus_tag="O9G_004542" /product="hypothetical protein" CDS join(11740..11820,11898..12023,12053..12100) /locus_tag="O9G_004542" /inference="ab initio prediction:SNAP:2010-07-28" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31510.1" /translation="MNIYIEGGLEEMIENFDETQVLYGFAKCPEGAAMNRRSQFNIHS RQVAQKLKGFHVEIVARNEFDIKPETQFQKPMRKSIVYKV" gene 12560..13866 /locus_tag="O9G_004543" mRNA join(12560..12895,12924..13145,13179..13319,13438..13866) /locus_tag="O9G_004543" /product="hypothetical protein" CDS join(12560..12895,12924..13145,13179..13319,13438..13866) /locus_tag="O9G_004543" /inference="ab initio prediction:SNAP:2010-07-28" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31511.1" /db_xref="InterPro:IPR015425" /translation="MQEILKFLPTDEEMNKLYKSHEKDFSIADSFIFEIGKVEDVRLR LNFLIQMKSIDTEGLIKDLSGCLKNYSRLVHKIESSSNLHRLLHIILVLGNILNGTEE SSFCPSSLHSLNNKKEFLNHCYEFVKSNEPEVLDLGIEFDDKVFENYRNPDEVMESIS ESIKALESFVRNEILFSDNEFQAFVMGVKEINNGYLNELQSLERKFKALFMETCSFLG ECNKDSLHFDICIGLYKHASLFHSMVSKSLLFYVLLYISITLALPNPLLPTIRQVRPA NSMSSQNRDDSPNPSFQNAANNNFMSYTDFIQQQHGKDAHLSQPGYDPHYASEHKRKY KKALKKAARYGTYVLGAAGALYVGSEIFAGDRSTNITPSPA" gene 14259..14699 /locus_tag="O9G_004544" mRNA join(14259..14647,14690..14699) /locus_tag="O9G_004544" /product="hypothetical protein" CDS join(14259..14647,14690..14699) /locus_tag="O9G_004544" /inference="ab initio prediction:SNAP:2010-07-28" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31512.1" /translation="MEFKFNFTNLLLLVLVFNQHYLDAKYMQRIRNSIPFTRSKTSPE NASNEPIRDRATRDIMDPNEPKKKSKLKRYAIGGLVATGIVVGTALTANHYLRPHGRV SSFSTKKTDDDKKSSGASKGSGRSRGKKLI" gene complement(15069..19718) /locus_tag="O9G_004545" mRNA complement(join(15069..15101,15139..15785,15810..15905, 15942..16412,16431..16818,16849..17348,17364..17713, 17742..17869,17896..18178,18205..18269,18299..18394, 18495..18868,18911..19481,19503..19718)) /locus_tag="O9G_004545" /product="hypothetical protein" CDS complement(join(15069..15101,15139..15785,15810..15905, 15942..16412,16431..16818,16849..17348,17364..17713, 17742..17869,17896..18178,18205..18269,18299..18394, 18495..18868,18911..19481,19503..19718)) /locus_tag="O9G_004545" /inference="ab initio prediction:SNAP:2010-07-28" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31513.1" /translation="MRFLVLAISLHYISAHTYPTYPAPYYTLGDIMGERMLPDKCSKN PVASIPNYSQENGAVSLVKYLHSKNLSLAGCPVCGGTTKPDYMFGMPNKPIQLTGRIH EGPCEIWIDDQLAYHNDQKCPFTIPIDYSKCTKPKCLLNIILAATHLASKIEFFQFCL SIGSGKPDPVAPDGFWHGDAANGTTPSVESNSQSTEKTTAGGNADKPNPSSSGQSSPS VPDASSTSTASNANENSTGAQSASESSSPETGAAESKAGSQKAKAATAKNNANESYVT PSKVDSSATTAHPIDQKTKSFICKIYAIIAPNKSCEDALKAIGVSGSPSDSTPPTPAL SGSDASANNTPASSGSSDNSNPSNSGSASHSPNVGKNVVDSTTPTATGDVDSIMFKKS TIACLNPPSQQLGDYLTNEQWQIEKYKDLVEVYNEALEEHSKNLLEESREKYMYVIRN LDRLELEEASSLKAIAMRNLMKVEGCLKPMDGVKRAVELLETFGDEWDWKYVCEAAKT DWVIRGIVLDEMKNEMNKDEYHMGMIECAYNLGDYETFFSLIDEFEVPIDELDEEQLR IALLNEYEVKSGVPFKYRRFYSKKVVLGEMTDVDMEIDDNSEMDFQGMDVCSQNKNEI DNKMIIKLERNSWMDLAKKLEKMHLGYFGKRKNEEFQMSGLIVEIEESKRNEMKSSQS NKMENEKENLKRKQKITFEEIMKEFFPEVSIDMNFAEKVKEIAGKGKKEKSFQEEINF TTFPDLGGEFSFFELIYLTLQGYSKEWKQRWGNNQIETFLYLFNLLIEIDFFLLNNFD LEIVLCGLELILDQRDLKLKEKINFERLKEFERLKEIEIENSETKNRIERLKFLVENV EIKECLSNLNLLEEFKQEEKIREKMKSEEIEDLKWIIFESKYFLNLKFNEKMDLLKKF TEKIRSEKDEISKVINLGIEIILENVFENNLNVTIGEINFIFNLLMNEEEFVAIKIES FFLLFSLIFHQEKKDPLLARRFCKKEDEIKFLKLSHEILSEFGFCCSDNGKMLLKLIE NVKGKEFLQCFNCLFGLLNGIVESHKVKTFKQPSLDLINRLLSFLSPDQLNQKLLISL TKFIPLKNTNVVNGYLQSKLEKNIFSLVRDLADNEGEVERVEVEVEVERRSERVEVER RSNNDGGRPDTVNVEGFDLNTVNVSIVNVSTMNGNVDTGNVSSDNIDTPIASLDNVDT PTVVTPSVHTANFVTTNLPLQSHSYTYLDIYFLLAKIKSKDLQETINFCLKDLSLNPG RLESWDILGNCFYSLLDNPKKIKNNILKSLLCFCKSKNFKSLSRAIYSIIDLNAMKFC HPETFILNKNSFYKSCIFCLMKIEKDSQDWIRLGKCFKKLGFLKDSLISFKMANQTEK NSSILSKYKFFSSCLKLIFHKRYKVKI" gene complement(19948..20661) /locus_tag="O9G_004546" mRNA complement(join(19948..20433,20470..20661)) /locus_tag="O9G_004546" /product="hypothetical protein" CDS complement(join(19948..20433,20470..20661)) /locus_tag="O9G_004546" /inference="ab initio prediction:SNAP:2010-07-28" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31514.1" /translation="MFWQLFLLAILRNVEGHSWLINPEPKLTVDTGMRMMPNKCNGNP TPSTLGITWPGPPAGNANGLDLVDGPFQCDKCGTTDPSHVVANPSGSVQIGGLIHVGP CEAWLGDSKVYSAPTQCPSSFNVDFTKCGGNCLLRVILAATHLNSPEFFQYCVTVGGG KNDQPYSQSSLAGSNLPTAPTTENKKVQVTQSVLSDSRKNTPSKNNCRKVRRCKKRKN QTLVDQY" gene 20830..22074 /locus_tag="O9G_004547" mRNA 20830..22074 /locus_tag="O9G_004547" /product="Glycoside hydrolase, family 18, catalytic domain-containing protein" CDS 20830..22074 /locus_tag="O9G_004547" /inference="ab initio prediction:Augustus:2.6.1" /note="GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence ISS]; GO_function: GO:0004568 - chitinase activity [Evidence ISS]; GO_function: GO:0003824 - catalytic activity [Evidence ISS]; GO_process: GO:0006032 - chitin catabolic process [Evidence ISS]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence ISS]" /codon_start=1 /product="Glycoside hydrolase, family 18, catalytic domain-containing protein" /protein_id="EPZ31515.1" /db_xref="InterPro:IPR001223" /translation="MNPESYIQLPIQATGTKVVVYFPNWAIYSRKYFVWDMDWNKITH INYAFANVLPDGSISLLDPWADTDQRFIDHGDSWNDPNENLFGNFNQLFKFKQNFRHV KVGLSLGGWTLSKYFSDACSTPEGRKKLVGSSIKLMIDLGLDFIDIDWEYPTEGGLDG NSHRPEDGENYVKLLKEFRTQFLGLNFVPQLSVAAPASKLYYRHWNIPQMCQLLDFVN IMTYDFSGSWSRKAGHQSNLYDYPNNEMNISVNETIVDWIKLGCPSEKIVMGMPIYGR SFENTKGLGFPFTSPTVGTWEPGVFDYKKLPLAGSSEYYDVKSGASYSYDSAKKILVS YDTIPVVNQKLEYIRDLSLGGAMFWEISADRPTNDPKSILSATYKYISANMNIDATPN NVLYPDSKYPNIRNSSNLAMYA" gene complement(22226..23435) /locus_tag="O9G_004548" mRNA complement(join(22226..22511,22542..22757,23350..23435)) /locus_tag="O9G_004548" /product="hypothetical protein" CDS complement(join(22226..22511,22542..22757,23350..23435)) /locus_tag="O9G_004548" /inference="ab initio prediction:Augustus:2.6.1" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31516.1" /translation="MNAEETWSILAVILIGLFGINSLGFKNLLQIEHEILEASLSFVK EHGFTQKALLEGAKLRGLDNAPKEMFPEPEISLIDTFLYDADEQIQESLSKKLKFLNL SLKEKIIYACTERLKLTFPIRKHWGNALAILKEDKDYGGFALFKVGEKLCELCIPEQD KSVKLFVILNKTHWMTYKSLIAAVYSSAGNAILKV" gene 23152..24014 /locus_tag="O9G_004549" mRNA join(23152..23446,23476..23561,23589..23740,23767..23897, 23959..24014) /locus_tag="O9G_004549" /product="hypothetical protein" CDS join(23152..23446,23476..23561,23589..23740,23767..23897, 23959..24014) /locus_tag="O9G_004549" /inference="ab initio prediction:SNAP:2010-07-28" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31517.1" /db_xref="InterPro:IPR009915" /translation="MQGFKPYAFVAGWSLFAGSHFVLSHPKNRDYVIKEYFDGSELNF QTAYSLFAMTTFIPTCVYYMNYSRFLKPRLFIPNKPMRITARILQVSSAFMFSQALYA DIPTISKNENEEKWEPKGILRITRHPLFGSFALLGIGNVLNSGYLGPTIFWGAFPIFW YFGSMHQDMRKKNDLPANYFSETSILPFKAIIEGKQSLWEALEEMEWSAGLGSATAMA TLIATRPKSYSRFECSGCFFF" gene complement(23955..24851) /locus_tag="O9G_004550" mRNA complement(join(23955..24374,24420..24689,24720..24851)) /locus_tag="O9G_004550" /product="hypothetical protein" CDS complement(join(23955..24374,24420..24689,24720..24851)) /locus_tag="O9G_004550" /inference="ab initio prediction:Augustus:2.6.1" /codon_start=1 /product="hypothetical protein" /protein_id="EPZ31518.1" /translation="MFKYFEDQKRVDHEENLHKLQQIIKIQHQYFKKRDEWLESKLEN AKKSQDDKKKEQSKATGTGKQKKKPLGLINEEKHKTLVENRKKTSIVLNRTLKAETKV KKDDMDCSKRDGKDLDWLNFDLFAKKYTETDEAGMDKSDKFYKRLNENKKITVQMLRK SRHDKSLVEKIINKTTEKEDSQKHTFIEPQCQVKHNKPIKPISKVSSFSDTAIDKPIE PMRLEVLAKMNLIEWEPLSLMAASETKRCLYPRSITSKEKTATTFKSTVRFWPCG" CONTIG join(ATJD01001129.1:1..25404) //