LOCUS       KD251552               91900 bp    DNA     linear   CON 20-MAR-2015
DEFINITION  Triticum urartu cultivar G1812 unplaced genomic scaffold
            scaffold1263, whole genome shotgun sequence.
ACCESSION   KD251552 AOTI010000000
VERSION     KD251552.1
DBLINK      BioProject: PRJNA182347
            BioSample: SAMN00217315
KEYWORDS    WGS.
SOURCE      Triticum urartu
  ORGANISM  Triticum urartu
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
REFERENCE   1  (bases 1 to 91900)
  AUTHORS   Ling,H.Q., Zhao,S., Liu,D., Wang,J., Sun,H., Zhang,C., Fan,H.,
            Li,D., Dong,L., Tao,Y., Gao,C., Wu,H., Li,Y., Cui,Y., Guo,X.,
            Zheng,S., Wang,B., Yu,K., Liang,Q., Yang,W., Lou,X., Chen,J.,
            Feng,M., Jian,J., Zhang,X., Luo,G., Jiang,Y., Liu,J., Wang,Z.,
            Sha,Y., Zhang,B., Wu,H., Tang,D., Shen,Q., Xue,P., Zou,S., Wang,X.,
            Liu,X., Wang,F., Yang,Y., An,X., Dong,Z., Zhang,K., Zhang,X.,
            Luo,M.C., Dvorak,J., Tong,Y., Wang,J., Yang,H., Li,Z., Wang,D.,
            Zhang,A. and Wang,J.
  TITLE     Draft genome of the wheat A-genome progenitor Triticum urartu
  JOURNAL   Nature 496 (7443), 87-90 (2013)
   PUBMED   23535596
REFERENCE   2  (bases 1 to 91900)
  AUTHORS   Zhao,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2013) BGI, Beishan Industrial Zone, Yantian
            District, Shenzhen, Guangdong, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.05
            Genome Coverage       :: 90x
            Sequencing Technology :: Illumina Hiseq2000
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..91900
                     /organism="Triticum urartu"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold1263"
                     /cultivar="G1812"
                     /db_xref="taxon:4572"
                     /chromosome="Unknown"
                     /geo_loc_name="China"
     assembly_gap    1375..2330
                     /estimated_length=956
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    4815..4854
                     /estimated_length=40
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    10261..10395
                     /estimated_length=135
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<13151..>13504)
                     /locus_tag="TRIUR3_10224"
     mRNA            complement(join(<13151..13350,13450..>13504))
                     /locus_tag="TRIUR3_10224"
                     /product="hypothetical protein"
     CDS             complement(join(13151..13350,13450..13504))
                     /locus_tag="TRIUR3_10224"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EMS48201.1"
                     /translation="MRTSHMLLLAIAFLALASDVVTRASAGVGGIPCTTSIIPSPKPC
                     DNNSCNQACIDRVWVGGYGECVAGACKCQQCTYIPPKNGN"
     gene            complement(<19382..>21543)
                     /locus_tag="TRIUR3_10225"
     mRNA            complement(join(<19382..19489,19608..19681,19783..19831,
                     20011..20268,21123..21170,21520..>21543))
                     /locus_tag="TRIUR3_10225"
                     /product="Ras-related protein RHN1"
     CDS             complement(join(19382..19489,19608..19681,19783..19831,
                     20011..20268,21123..21170,21520..21543))
                     /locus_tag="TRIUR3_10225"
                     /codon_start=1
                     /product="Ras-related protein RHN1"
                     /protein_id="EMS48202.1"
                     /db_xref="UniProtKB/Swiss-Prot:RHN1_NICPL"
                     /translation="MVPGGSKREKSSPKNLPATSRHTTVLLGDLGAGKTSIVVRFAKG
                     LYYECQESTIGAAFFSQALPVSGGGEDATVRFDIWDTAGQERYHSLAPMYYRGAAAAV
                     VVYDITSMDSYIRAKRWVDELQRQGNPHLVMALVGNKVDLEKKRKVGTQEALEYAERN
                     GLFFLETSAKTAQNVGELFYELGKNR"
     assembly_gap    25112..28188
                     /estimated_length=3077
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    29696..29746
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    30632..38812
                     /estimated_length=8181
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    45350..46309
                     /estimated_length=960
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    47547..47892
                     /estimated_length=346
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <55852..>59404
                     /locus_tag="TRIUR3_10226"
     mRNA            join(<55852..55985,56203..56335,56434..56699,57379..57523,
                     57610..57750,57839..>59404)
                     /locus_tag="TRIUR3_10226"
                     /product="hypothetical protein"
     CDS             join(55852..55985,56203..56335,56434..56699,57379..57523,
                     57610..57750,57839..59404)
                     /locus_tag="TRIUR3_10226"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EMS48203.1"
                     /translation="MGVSFVFSSPIRCLQMLLGSWVARPRSARRDVRDFVPLRASELV
                     GKHAFKCTRTRLVVIRRKKQAMIGFLKKDVADLLTNGLDIHAFGRAESENVFALWPPS
                     PEEKLAKVLLIGGQVLVSLLEEKSETAMTECCSFVSCLCFQMDALIMEMNHASCYDMI
                     EQYCDFLGKQLNSLQKQRDCPQESMEAVSTLIFATARFPDLPELCDLRHIFTERYGGS
                     LEPFVSLEFIRKLESELFTNEEKFQVMQSIAEESSVGFDMRALEIKLWAARESEDDLL
                     EKDSMNKDEPAVPLPIKQKDDGRLNDNTGRKNYDKSHGKEQLEKSVSPLDLKREKAQK
                     DDNTRRRHADKADGKEHLEKSVSPLQTEREEAQRRVQKLKKKDLRPSEKELMEAVELD
                     INGLPKQGSGLVKFPETESNRIVPPIVKPKETKKELGVEKENNRGLGYHHRSPIPGRP
                     DYTRRHANLGCKALGLQNQGPTSLSPTSGKTTNRPSPVSNPNGAKGRNCDEKEEGNSC
                     LRGRPQHLEDLGHTVQNGQRAPHRVANVQPPYVKPKLGMQPVKDDPAKPIDSNCNMSE
                     RTDRLVDKDVLRPVSVRRRPAAPAFDEAPNGEKVTSQKGNSHRIQPSKHKGATDGYDR
                     KGSGVGNGRNVERTPSGRPSHSGMRNGVLYDDDYDGSMQQPKAGEAEAIDFGNLLPRA
                     ANGHHRLNSRNTDVHGGDPDEEERMMDKLLMHYSKKGSGTDETKTTVETSRTANCHGR
                     AVSLPHESVSPGEAAKVPARSTSMRSDCPGGVRVHPKMPDFEELAARVMALRNA"
     assembly_gap    60464..60530
                     /estimated_length=67
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <62933..>68114
                     /locus_tag="TRIUR3_10227"
     mRNA            join(<62933..63243,65909..65954,66459..>68114)
                     /locus_tag="TRIUR3_10227"
                     /product="hypothetical protein"
     CDS             join(62933..63243,65909..65954,66459..68114)
                     /locus_tag="TRIUR3_10227"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EMS48204.1"
                     /translation="MQWWDEWQLRVLVLGSLFVQYLLFFSSVVRRPALPSWFRLLFWL
                     AYLGGDALAIYALATLFNRHKQQEQLAAGLEVLWAPVLLIHLGGQHLITAYSIEDNEL
                     WSLLTEEKTKSYRISMKVVVALYVFCKSWPGGPKRLLQAAILLFIVGIFRSIQKPLAM
                     KNASISNIVASLSLSRSEQNELALFCGTICYCSMGPRKLYITKEGERAEQKDISLEEF
                     VQKATSLPELASDQGKAEGMASRDSWEVNVYRPLADISALYSDRIKNLQLFMALDYQH
                     ANSMSREQLTKLFSFLYTKLANIVCCFFCCHFWLPFLILASVILFSTYHKYYDYNATD
                     VKVTYILFWSTALLDFLFLFVSVSIMETETDMVSQHNLLSFYARKKRPTLLMKLATLA
                     CCKGYVNMHCYIEHAPATSSLQVVELVHGYVMDGWRRYIKDAASYKRFNLHRGQWALR
                     RQRHLGWSLNMSFDRSVLLWHIATDICFHHQSTTPRGQECAARSRVISNYMAYLLSIR
                     SEMLIPGSRIGIFTIACEDIERMLGDNSALHDEKGLAQGIISRAQQPPLVDNTSITGT
                     ACRLAKMLMELEDEVERWEMVQGVWVEMLCYSASRCRAYLHAKNMSEVTELLTRVWFL
                     LISMGMETLPDRFQKSEYLEIKEEKAEENNDDGEDIVIEHKINMPI"
     assembly_gap    63869..64456
                     /estimated_length=588
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    66103..66287
                     /estimated_length=185
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    69380..70134
                     /estimated_length=755
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    71166..72424
                     /estimated_length=1259
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    72802..72945
                     /estimated_length=144
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    74001..74385
                     /estimated_length=385
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    76702..76843
                     /estimated_length=142
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    78683..79110
                     /estimated_length=428
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    79319..81518
                     /estimated_length=2200
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    81698..81990
                     /estimated_length=293
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    83642..84012
                     /estimated_length=371
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    88414..88628
                     /estimated_length=215
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    88704..90121
                     /estimated_length=1418
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    91060..91183
                     /estimated_length=124
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AOTI011077013.1:1..1374,gap(956),AOTI011077014.1:1..2484,
            gap(40),AOTI011077015.1:1..5406,gap(135),AOTI011077016.1:1..14716,
            gap(3077),AOTI011077017.1:1..1507,gap(51),AOTI011077018.1:1..885,
            gap(8181),AOTI011077019.1:1..6537,gap(960),AOTI011077020.1:1..1237,
            gap(346),AOTI011077021.1:1..12571,gap(67),AOTI011077022.1:1..3338,
            gap(588),AOTI011077023.1:1..1646,gap(185),AOTI011077024.1:1..3092,
            gap(755),AOTI011077025.1:1..1031,gap(1259),AOTI011077026.1:1..377,
            gap(144),AOTI011077027.1:1..1055,gap(385),AOTI011077028.1:1..2316,
            gap(142),AOTI011077029.1:1..1839,gap(428),AOTI011077030.1:1..208,
            gap(2200),AOTI011077031.1:1..179,gap(293),AOTI011077032.1:1..1651,
            gap(371),AOTI011077033.1:1..4401,gap(215),AOTI011077034.1:1..75,
            gap(1418),AOTI011077035.1:1..938,gap(124),AOTI011077036.1:1..717)
//