LOCUS KD240010 88628 bp DNA linear CON 20-MAR-2015 DEFINITION Triticum urartu cultivar G1812 unplaced genomic scaffold scaffold90534, whole genome shotgun sequence. ACCESSION KD240010 AOTI010000000 VERSION KD240010.1 DBLINK BioProject: PRJNA182347 BioSample: SAMN00217315 KEYWORDS WGS. SOURCE Triticum urartu ORGANISM Triticum urartu Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum. REFERENCE 1 (bases 1 to 88628) AUTHORS Ling,H.Q., Zhao,S., Liu,D., Wang,J., Sun,H., Zhang,C., Fan,H., Li,D., Dong,L., Tao,Y., Gao,C., Wu,H., Li,Y., Cui,Y., Guo,X., Zheng,S., Wang,B., Yu,K., Liang,Q., Yang,W., Lou,X., Chen,J., Feng,M., Jian,J., Zhang,X., Luo,G., Jiang,Y., Liu,J., Wang,Z., Sha,Y., Zhang,B., Wu,H., Tang,D., Shen,Q., Xue,P., Zou,S., Wang,X., Liu,X., Wang,F., Yang,Y., An,X., Dong,Z., Zhang,K., Zhang,X., Luo,M.C., Dvorak,J., Tong,Y., Wang,J., Yang,H., Li,Z., Wang,D., Zhang,A. and Wang,J. TITLE Draft genome of the wheat A-genome progenitor Triticum urartu JOURNAL Nature 496 (7443), 87-90 (2013) PUBMED 23535596 REFERENCE 2 (bases 1 to 88628) AUTHORS Zhao,S. TITLE Direct Submission JOURNAL Submitted (17-FEB-2013) BGI, Beishan Industrial Zone, Yantian District, Shenzhen, Guangdong, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.05 Genome Coverage :: 90x Sequencing Technology :: Illumina Hiseq2000 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..88628 /organism="Triticum urartu" /mol_type="genomic DNA" /submitter_seqid="scaffold90534" /cultivar="G1812" /db_xref="taxon:4572" /chromosome="Unknown" /geo_loc_name="China" assembly_gap 294..461 /estimated_length=168 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1792..1812 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3226..3925 /estimated_length=700 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5116..5131 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5435..12181 /estimated_length=6747 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 18869..25803 /estimated_length=6935 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 29053..29162 /estimated_length=110 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 29697..30308 /estimated_length=612 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 48322..49322 /estimated_length=1001 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 50734..50792 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 54719..54763 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <56727..>56900 /locus_tag="TRIUR3_16433" mRNA <56727..>56900 /locus_tag="TRIUR3_16433" /product="hypothetical protein" CDS 56727..56900 /locus_tag="TRIUR3_16433" /codon_start=1 /product="hypothetical protein" /protein_id="EMS49719.1" /translation="MRWIPRHPKTRKGVASDEMLRGVENKHRSGDSQIGQPFKLPAES MSRQETTWRTETS" assembly_gap 57275..57346 /estimated_length=72 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 57578..57710 /estimated_length=133 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <57744..>69488 /locus_tag="TRIUR3_16434" mRNA join(<57744..57826,59730..59771,60975..61149,61435..61518, 61608..61613,62178..62419,62508..62751,62927..63006, 63088..63172,63354..63390,63479..63516,63722..63853, 63951..64064,65483..65530,66007..66088,66340..66390, 68569..>69488) /locus_tag="TRIUR3_16434" /product="Serine/threonine-protein kinase CBK1" CDS join(57744..57826,59730..59771,60975..61149,61435..61518, 61608..61613,62178..62419,62508..62751,62927..63006, 63088..63172,63354..63390,63479..63516,63722..63853, 63951..64064,65483..65530,66007..66088,66340..66390, 68569..69488) /locus_tag="TRIUR3_16434" /codon_start=1 /product="Serine/threonine-protein kinase CBK1" /protein_id="EMS49720.1" /db_xref="UniProtKB/Swiss-Prot:CBK1_PNECA" /translation="MERVAAAKKFIENHYRSHMKNIQERKERFCLMRQVRMVPIMGRF RLERQLATSEVPREQQINLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEVR LCREKTSGNIYAMKKLKKSDMVIRGQMVVEHVRAERNLMAEVASHCTVKLYYSFQDTE YLYLIMEYLPGGDIMTLLMREDTLTEPVARFYIAETILAIESIHKHNYIHRDIKPDNL LLDKNGHMKLSDFGLCKPIDCSKLSTLSEDEPMGDDNLKESMDVDSSLSETANGRRWR SQHEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYP PFYSDDPITTCRKFNLKFKLQEPEEMTKYPLLDHVLLSIVHWRNHVKFPDDSRLSPEA RDLICRLLCDVDHRIGGAGADQIKAHPWFRGVAWDKLYEMEAAFKPQVNDELDTQNFM KFDEMDNSPPARTGSGPSRKAKLNSKDLSFVGYTYKNFDAVKGLKHADMQRSSSLTRP SIGAIFGEAFSKGIHFCLCYSSWPSTPSPHDLSGSRLGRTLDGPCKSGTLSNFTIADD AGIFANPDKDELTTINSILDCFGNALGLITNIIKTEIFPIRCENFDLQNLLTVFPTKI ASFLVKKLGLPLHFHRQCKVRLQPLIDKVHGRLPRWKGKNIARVGRVALAKSSLTSTA TFHMTVIPLPKCASAKQDKITDSFVWSGDDSDTVGASHSLVNWKIVGRPKVLGVLGIT NLVLFGRVLRLQQLWLKWNDSKRPWARSPLPCDASDLALFRASATITIGDEHKASFWH DNWYGKGALWILSHPGLFAISP" assembly_gap 64877..65154 /estimated_length=278 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 71062..71242 /estimated_length=181 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <71249..>71593 /locus_tag="TRIUR3_16435" mRNA <71249..>71593 /locus_tag="TRIUR3_16435" /product="hypothetical protein" CDS 71249..71593 /locus_tag="TRIUR3_16435" /codon_start=1 /product="hypothetical protein" /protein_id="EMS49721.1" /translation="MPSGTSGVSVMQIHNEEGAAHSTVLMLHVYDGVLRFYSGAAIEP DIYDRWFRLNVMHDVGASTVAVYVDGERKFSTSVTPSESYYFKFGVYMQHHDQSSCME SRWTNVTLYTKH" assembly_gap 75817..84576 /estimated_length=8760 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(AOTI011000442.1:1..293,gap(168),AOTI011000443.1:1..1330, gap(21),AOTI011000444.1:1..1413,gap(700),AOTI011000445.1:1..1190, gap(16),AOTI011000446.1:1..303,gap(6747),AOTI011000447.1:1..6687, gap(6935),AOTI011000448.1:1..3249,gap(110),AOTI011000449.1:1..534, gap(612),AOTI011000450.1:1..18013,gap(1001), AOTI011000451.1:1..1411,gap(59),AOTI011000452.1:1..3926,gap(45), AOTI011000453.1:1..2511,gap(72),AOTI011000454.1:1..231,gap(133), AOTI011000455.1:1..7166,gap(278),AOTI011000456.1:1..5907,gap(181), AOTI011000457.1:1..4574,gap(8760),AOTI011000458.1:1..4052) //