LOCUS       KD214929               96477 bp    DNA     linear   CON 20-MAR-2015
DEFINITION  Triticum urartu cultivar G1812 unplaced genomic scaffold
            scaffold70326, whole genome shotgun sequence.
ACCESSION   KD214929 AOTI010000000
VERSION     KD214929.1
DBLINK      BioProject: PRJNA182347
            BioSample: SAMN00217315
KEYWORDS    WGS.
SOURCE      Triticum urartu
  ORGANISM  Triticum urartu
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
REFERENCE   1  (bases 1 to 96477)
  AUTHORS   Ling,H.Q., Zhao,S., Liu,D., Wang,J., Sun,H., Zhang,C., Fan,H.,
            Li,D., Dong,L., Tao,Y., Gao,C., Wu,H., Li,Y., Cui,Y., Guo,X.,
            Zheng,S., Wang,B., Yu,K., Liang,Q., Yang,W., Lou,X., Chen,J.,
            Feng,M., Jian,J., Zhang,X., Luo,G., Jiang,Y., Liu,J., Wang,Z.,
            Sha,Y., Zhang,B., Wu,H., Tang,D., Shen,Q., Xue,P., Zou,S., Wang,X.,
            Liu,X., Wang,F., Yang,Y., An,X., Dong,Z., Zhang,K., Zhang,X.,
            Luo,M.C., Dvorak,J., Tong,Y., Wang,J., Yang,H., Li,Z., Wang,D.,
            Zhang,A. and Wang,J.
  TITLE     Draft genome of the wheat A-genome progenitor Triticum urartu
  JOURNAL   Nature 496 (7443), 87-90 (2013)
   PUBMED   23535596
REFERENCE   2  (bases 1 to 96477)
  AUTHORS   Zhao,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2013) BGI, Beishan Industrial Zone, Yantian
            District, Shenzhen, Guangdong, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.05
            Genome Coverage       :: 90x
            Sequencing Technology :: Illumina Hiseq2000
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..96477
                     /organism="Triticum urartu"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold70326"
                     /cultivar="G1812"
                     /db_xref="taxon:4572"
                     /chromosome="Unknown"
                     /geo_loc_name="China"
     assembly_gap    205..297
                     /estimated_length=93
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1787..5826
                     /estimated_length=4040
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6241..6339
                     /estimated_length=99
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6640..8537
                     /estimated_length=1898
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    9227..9422
                     /estimated_length=196
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    11167..11721
                     /estimated_length=555
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    16646..16809
                     /estimated_length=164
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    17816..19888
                     /estimated_length=2073
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    21013..21950
                     /estimated_length=938
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    33680..34036
                     /estimated_length=357
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <34145..>39343
                     /locus_tag="TRIUR3_15242"
     mRNA            join(<34145..34177,34296..34529,35601..35708,35791..35846,
                     36134..36245,36769..36939,37084..37299,37545..37751,
                     37848..38069,38158..38277,38367..38651,38723..38821,
                     38906..>39343)
                     /locus_tag="TRIUR3_15242"
                     /product="hypothetical protein"
     CDS             join(34145..34177,34296..34529,35601..35708,35791..35846,
                     36134..36245,36769..36939,37084..37299,37545..37751,
                     37848..38069,38158..38277,38367..38651,38723..38821,
                     38906..39343)
                     /locus_tag="TRIUR3_15242"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EMS51817.1"
                     /translation="MAQSEGRAIYQDESGGLDDFCSITIDGTGGLSEDILQQRLQSIV
                     RQREELQQVEIDLRAQAIAHPQIIEVQRRFGEATKEHLVAAEKLKIEQEQLHEREKYI
                     LELEMKLDDTHRELDALKIDHQTVWANQDLLREQTKEIASFRRERDNSEAERAQHLKQ
                     IHDLQEHLREKESQYLALEEQHRVAQDNILYKDEQLRDAHAWITRVQEMDILQSQSLQ
                     AELRERTDQFGQCWATFQQQYVEMQQGFLHTIQRLQLELIELRDRTGEQEDVSQAAQE
                     GSAEASYVQSKGSNMAANGSALADGNQSTNDSFKGNNAHAVPVVPSLLGLSGFVPPGQ
                     MAGMHSYMLHPQGIPQSLASPNSGVPQFGTFQPTIQPTMHWPNQQEAQAASQTPDATN
                     YHPSQSDQNALQPAALQPAASNNVELSSGQSQVTHPENLTAHGEQEQRSTSVVAESTQ
                     EPKVMESNVTEHFYNEEQKAHDSSSNASSTGKFERQEERSESKGEKVASGKQPVEHVP
                     RKQNQASDSAGSTTQIHMNNMAPELKSNVVNQSDTLTSAGGGVGSLLPKEPVLLDERC
                     LLACIVRAVPAGSDNRIRISSTLPNRLGKMLAPLHWHDYKKSYGKLDDFVASHNELFV
                     IEGDFIHLREGAQQIISATTAAAKIAAAAAAASSASYSSLLPSVAVTPVAHTTRQKRG
                     PVVDSRSSNSMPSGNGSNTAKFGNQHQANGFSDEVRAGQSSRHTAAANGGRHERVGPP
                     TTHEKIPSARHGYGGKQQGRYGLFQI"
     assembly_gap    34546..34807
                     /estimated_length=262
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    44615..47044
                     /estimated_length=2430
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    48966..49238
                     /estimated_length=273
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    49441..50634
                     /estimated_length=1194
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    51006..51112
                     /estimated_length=107
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    51401..51550
                     /estimated_length=150
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    52355..52503
                     /estimated_length=149
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    52687..52752
                     /estimated_length=66
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    52913..57163
                     /estimated_length=4251
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    57343..58011
                     /estimated_length=669
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    58404..58434
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    61830..68540
                     /estimated_length=6711
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    71455..71489
                     /estimated_length=35
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    72007..72541
                     /estimated_length=535
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <75855..>79182
                     /locus_tag="TRIUR3_15243"
     mRNA            join(<75855..76005,76107..76372,77749..77926,78148..78223,
                     78324..78453,78523..>79182)
                     /locus_tag="TRIUR3_15243"
                     /product="hypothetical protein"
     CDS             join(75855..76005,76107..76372,77749..77926,78148..78223,
                     78324..78453,78523..79182)
                     /locus_tag="TRIUR3_15243"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EMS51818.1"
                     /translation="MRSKAAPSGRIRRRSTVTTRSKDQSSPRSRMTGNESRDDAFKKE
                     TIFAAAGSTNAQALPKSTTQPPPGPPPQHPRPRHHLTRDLPHPNKRDERKGPTFRAPG
                     HPQRRDPIGRPELASTDPSYCPKCETSSVLQQREGDEKMNRMRRIAGMGKSKKAPSAV
                     QKDKDESIVFFRELYKHEEDTDVNLLEPIYSVEFDAIQGGHMSKPPSGKRDLLMPIIE
                     KHDYDWPKTPPVAPMFPSLKMEASSSETVVAPKVTPIPITQPVKPSASRLNDFSKSWL
                     GQFIGKTEATKTSAKTPAGSSSSNSAKSQPCTTDRRPASAYATLPNRQQKSDAKANTG
                     TSSNSGKEHSHTYYANASQDSSSSSASTTNTVETPGEAPYTAPKNLLTTGSIFARRRA
                     SATAVATAPPLGVDTKVESAKARRPPSSAARASKELQVDARKNALPAKGKAVAGTGSE
                     PVCNSSGRASTSKTAPAKGMRRTDGKNERRPKFADQ"
     assembly_gap    76590..77208
                     /estimated_length=619
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<79490..>84332)
                     /locus_tag="TRIUR3_15244"
     mRNA            complement(join(<79490..79753,79833..79925,80292..80360,
                     80439..80486,80670..80757,80826..80905,80978..81049,
                     81381..81472,81986..82067,83229..83315,84255..>84332))
                     /locus_tag="TRIUR3_15244"
                     /product="La-related protein 7"
     CDS             complement(join(79490..79753,79833..79925,80292..80360,
                     80439..80486,80670..80757,80826..80905,80978..81049,
                     81381..81472,81986..82067,83229..83315,84255..84332))
                     /locus_tag="TRIUR3_15244"
                     /codon_start=1
                     /product="La-related protein 7"
                     /protein_id="EMS51819.1"
                     /db_xref="UniProtKB/Swiss-Prot:LARP7_DANRE"
                     /translation="MAQDEVPESSSPSSAAAGRLNAAAPEGEDEGDAAAVVDNAQLVL
                     PEELARRVVKQVEFYFSDVNLATTDHLMKYITKDPDGFVPMTVVASFRKIRELIDRSL
                     LPGALRTSTELVVSDDGKMVRRRVPFSDVDAEEVQSRIIVAEKLPEDHRYQNLMRIFS
                     TVGSVKSIRTCYPQGIDISAGKSSRIEMLFANKLHAFVEYGTVEDAEKAVAEFSGGRN
                     WRDGPRVRSLLGCLKHGIGQGRKGGDEEAADEDDPEEYEAEDASQGEDGFYDKAGMRQ
                     GRGRGRGGRGRGRGQYHGQSRDGGHPIGTPPSNHSAEHPVVSKPPPGPRMPDGTKGFA
                     MGRGKPQVSPAVLSDA"
     assembly_gap    83484..84183
                     /estimated_length=700
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    93780..93797
                     /estimated_length=18
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    95615..96233
                     /estimated_length=619
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AOTI010896408.1:1..204,gap(93),AOTI010896409.1:1..1489,
            gap(4040),AOTI010896410.1:1..414,gap(99),AOTI010896411.1:1..300,
            gap(1898),AOTI010896412.1:1..689,gap(196),AOTI010896413.1:1..1744,
            gap(555),AOTI010896414.1:1..4924,gap(164),AOTI010896415.1:1..1006,
            gap(2073),AOTI010896416.1:1..1124,gap(938),
            AOTI010896417.1:1..11729,gap(357),AOTI010896418.1:1..509,gap(262),
            AOTI010896419.1:1..9807,gap(2430),AOTI010896420.1:1..1921,gap(273),
            AOTI010896421.1:1..202,gap(1194),AOTI010896422.1:1..371,gap(107),
            AOTI010896423.1:1..288,gap(150),AOTI010896424.1:1..804,gap(149),
            AOTI010896425.1:1..183,gap(66),AOTI010896426.1:1..160,gap(4251),
            AOTI010896427.1:1..179,gap(669),AOTI010896428.1:1..392,gap(31),
            AOTI010896429.1:1..3395,gap(6711),AOTI010896430.1:1..2914,gap(35),
            AOTI010896431.1:1..517,gap(535),AOTI010896432.1:1..4048,gap(619),
            AOTI010896433.1:1..6275,gap(700),AOTI010896434.1:1..9596,gap(18),
            AOTI010896435.1:1..1817,gap(619),AOTI010896436.1:1..244)
//