LOCUS       KD202186               74848 bp    DNA     linear   CON 20-MAR-2015
DEFINITION  Triticum urartu cultivar G1812 unplaced genomic scaffold
            scaffold30373, whole genome shotgun sequence.
ACCESSION   KD202186 AOTI010000000
VERSION     KD202186.1
DBLINK      BioProject: PRJNA182347
            BioSample: SAMN00217315
KEYWORDS    WGS.
SOURCE      Triticum urartu
  ORGANISM  Triticum urartu
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
REFERENCE   1  (bases 1 to 74848)
  AUTHORS   Ling,H.Q., Zhao,S., Liu,D., Wang,J., Sun,H., Zhang,C., Fan,H.,
            Li,D., Dong,L., Tao,Y., Gao,C., Wu,H., Li,Y., Cui,Y., Guo,X.,
            Zheng,S., Wang,B., Yu,K., Liang,Q., Yang,W., Lou,X., Chen,J.,
            Feng,M., Jian,J., Zhang,X., Luo,G., Jiang,Y., Liu,J., Wang,Z.,
            Sha,Y., Zhang,B., Wu,H., Tang,D., Shen,Q., Xue,P., Zou,S., Wang,X.,
            Liu,X., Wang,F., Yang,Y., An,X., Dong,Z., Zhang,K., Zhang,X.,
            Luo,M.C., Dvorak,J., Tong,Y., Wang,J., Yang,H., Li,Z., Wang,D.,
            Zhang,A. and Wang,J.
  TITLE     Draft genome of the wheat A-genome progenitor Triticum urartu
  JOURNAL   Nature 496 (7443), 87-90 (2013)
   PUBMED   23535596
REFERENCE   2  (bases 1 to 74848)
  AUTHORS   Zhao,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2013) BGI, Beishan Industrial Zone, Yantian
            District, Shenzhen, Guangdong, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.05
            Genome Coverage       :: 90x
            Sequencing Technology :: Illumina Hiseq2000
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..74848
                     /organism="Triticum urartu"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold30373"
                     /cultivar="G1812"
                     /db_xref="taxon:4572"
                     /chromosome="Unknown"
                     /geo_loc_name="China"
     assembly_gap    1283..2309
                     /estimated_length=1027
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6568..6762
                     /estimated_length=195
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    8214..8922
                     /estimated_length=709
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    15385..16294
                     /estimated_length=910
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    18394..18430
                     /estimated_length=37
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    18750..19351
                     /estimated_length=602
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    21373..21385
                     /estimated_length=13
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    22375..22775
                     /estimated_length=401
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    32536..32669
                     /estimated_length=134
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<46287..>52913)
                     /locus_tag="TRIUR3_33865"
     mRNA            complement(join(<46287..46424,46515..46582,46872..47010,
                     47099..47719,47807..47866,47953..47994,48155..48228,
                     49544..49645,51044..51363,52711..>52913))
                     /locus_tag="TRIUR3_33865"
                     /product="Splicing factor U2af large subunit A"
     CDS             complement(join(46287..46424,46515..46582,46872..47010,
                     47099..47719,47807..47866,47953..47994,48155..48228,
                     49544..49645,51044..51363,52711..52913))
                     /locus_tag="TRIUR3_33865"
                     /codon_start=1
                     /product="Splicing factor U2af large subunit A"
                     /protein_id="EMS52811.1"
                     /db_xref="UniProtKB/Swiss-Prot:U2A2A_ORYSJ"
                     /translation="MPEISCGTARLLHIAMPPSLPFVGRSSWVALARRENAAAKLGCD
                     DKDSRDKSGAWPHSCVTLAYNRWARYSHMREGPQNLERGTEDERRTRTRSVIENMEEI
                     EKGAGIRTGRGIGVTGTGNTTATIGSTVKEVKKGSTMKEVKKGSTVKEVKKGSTVAIL
                     MTMIVIAAVNVMLKEETVTEMAIAGIAPVPVLRVVNADPDLVRVLVQRGQLPAVAPLI
                     TGMLPNMFNFTAPTQFNPLVMQPQAMTQQATRHARRVYVGGLPPTANEQTVAIYFNQV
                     MAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRP
                     TDYNPSLAAALGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVREL
                     LESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRAN
                     QGTSQPRPEQETILLHAQQQVQMQKLVLQVGGALPTKVVCLTQVVSADELRDDEEYED
                     ILEDMREEGRKYGNLVKAVIPRPDPSGAAVPGVGKVFLEYADIDGSTKAKVGMHGRKF
                     GGNQVVAVFYPENKFADGDYDD"
     assembly_gap    52140..52560
                     /estimated_length=421
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    56465..58413
                     /estimated_length=1949
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    58974..59776
                     /estimated_length=803
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    66167..66361
                     /estimated_length=195
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    66603..66723
                     /estimated_length=121
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    66907..68776
                     /estimated_length=1870
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    68859..69109
                     /estimated_length=251
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    69294..69569
                     /estimated_length=276
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    72705..73380
                     /estimated_length=676
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AOTI010845791.1:1..1282,gap(1027),AOTI010845792.1:1..4258,
            gap(195),AOTI010845793.1:1..1451,gap(709),AOTI010845794.1:1..6462,
            gap(910),AOTI010845795.1:1..2099,gap(37),AOTI010845796.1:1..319,
            gap(602),AOTI010845797.1:1..2021,gap(13),AOTI010845798.1:1..989,
            gap(401),AOTI010845799.1:1..9760,gap(134),AOTI010845800.1:1..19470,
            gap(421),AOTI010845801.1:1..3904,gap(1949),AOTI010845802.1:1..560,
            gap(803),AOTI010845803.1:1..6390,gap(195),AOTI010845804.1:1..241,
            gap(121),AOTI010845805.1:1..183,gap(1870),AOTI010845806.1:1..82,
            gap(251),AOTI010845807.1:1..184,gap(276),AOTI010845808.1:1..3135,
            gap(676),AOTI010845809.1:1..1468)
//