LOCUS KD027802 52828 bp DNA linear CON 20-MAR-2015 DEFINITION Triticum urartu cultivar G1812 unplaced genomic scaffold scaffold68825, whole genome shotgun sequence. ACCESSION KD027802 AOTI010000000 VERSION KD027802.1 DBLINK BioProject: PRJNA182347 BioSample: SAMN00217315 KEYWORDS WGS. SOURCE Triticum urartu ORGANISM Triticum urartu Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum. REFERENCE 1 (bases 1 to 52828) AUTHORS Ling,H.Q., Zhao,S., Liu,D., Wang,J., Sun,H., Zhang,C., Fan,H., Li,D., Dong,L., Tao,Y., Gao,C., Wu,H., Li,Y., Cui,Y., Guo,X., Zheng,S., Wang,B., Yu,K., Liang,Q., Yang,W., Lou,X., Chen,J., Feng,M., Jian,J., Zhang,X., Luo,G., Jiang,Y., Liu,J., Wang,Z., Sha,Y., Zhang,B., Wu,H., Tang,D., Shen,Q., Xue,P., Zou,S., Wang,X., Liu,X., Wang,F., Yang,Y., An,X., Dong,Z., Zhang,K., Zhang,X., Luo,M.C., Dvorak,J., Tong,Y., Wang,J., Yang,H., Li,Z., Wang,D., Zhang,A. and Wang,J. TITLE Draft genome of the wheat A-genome progenitor Triticum urartu JOURNAL Nature 496 (7443), 87-90 (2013) PUBMED 23535596 REFERENCE 2 (bases 1 to 52828) AUTHORS Zhao,S. TITLE Direct Submission JOURNAL Submitted (17-FEB-2013) BGI, Beishan Industrial Zone, Yantian District, Shenzhen, Guangdong, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.05 Genome Coverage :: 90x Sequencing Technology :: Illumina Hiseq2000 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..52828 /organism="Triticum urartu" /mol_type="genomic DNA" /submitter_seqid="scaffold68825" /cultivar="G1812" /db_xref="taxon:4572" /chromosome="Unknown" /geo_loc_name="China" assembly_gap 1745..1907 /estimated_length=163 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4743..4946 /estimated_length=204 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 13689..13778 /estimated_length=90 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 14052..14161 /estimated_length=110 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 16460..17192 /estimated_length=733 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <17242..>18941 /locus_tag="TRIUR3_07902" mRNA join(<17242..17279,18606..18687,18759..>18941) /locus_tag="TRIUR3_07902" /product="ADP-ribosylation factor-like protein 8" CDS join(17242..17279,18606..18687,18759..18941) /locus_tag="TRIUR3_07902" /codon_start=1 /product="ADP-ribosylation factor-like protein 8" /protein_id="EMS66734.1" /db_xref="UniProtKB/Swiss-Prot:ARL8_DICDI" /translation="MGFWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGF SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVPLLSIL" gene <19880..>21220 /locus_tag="TRIUR3_07903" mRNA join(<19880..20034,20855..21016,21103..>21220) /locus_tag="TRIUR3_07903" /product="ADP-ribosylation factor-like protein 8B" CDS join(19880..20034,20855..21016,21103..21220) /locus_tag="TRIUR3_07903" /codon_start=1 /product="ADP-ribosylation factor-like protein 8B" /protein_id="EMS66735.1" /db_xref="UniProtKB/Swiss-Prot:ARL8B_BOVIN" /translation="MQAGSLLWCGGLAAGYLLLLCGEWQLRGGCGGGGSKPRLGGMRR EKGRGDRRYVVDAADRENMAIAKSELHDLLSKPSLTGIPLLVIGNKIDKPEAFPKQSF TELMGLKAMTDREVACFMISCKNSTNIDSVIDWLVKHSKKKN" assembly_gap 22159..22550 /estimated_length=392 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <22938..>26335 /locus_tag="TRIUR3_07904" mRNA join(<22938..23146,24081..24281,24729..25043, 26266..>26335) /locus_tag="TRIUR3_07904" /product="hypothetical protein" CDS join(22938..23146,24081..24281,24729..25043,26266..26335) /locus_tag="TRIUR3_07904" /codon_start=1 /product="hypothetical protein" /protein_id="EMS66736.1" /translation="MEPVAWNETVSSAVSRDPAVLEFRKIVCEGDFDTEKSVFLGPRS RSISGVTENGYYVITPLIPRSTEPGSLQSPILVNRGWIPRAWRDKNMQDHQDLGETLD VNEADKKTDERGTWWKFWSKKPESSPEVIYSPNQTHKIDASYFVQIEKPVKPPVRVIG VIRGSEKPSIFVPPNEPSNGQWFYVDVPMIARACGLPENTVYIEDMNEDISASNPYPL PKDANALIHHSVMPDDHLKYTFTWSTLSAAVTYMAAKRIKAKKVRL" assembly_gap 27125..27285 /estimated_length=161 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<27314..>44647) /locus_tag="TRIUR3_07905" mRNA complement(join(<27314..27565,35648..35826,38602..38626, 42820..42882,43006..43206,43352..43495,44363..44468, 44589..>44647)) /locus_tag="TRIUR3_07905" /product="40S ribosomal protein S3a" CDS complement(join(27314..27565,35648..35826,38602..38626, 42820..42882,43006..43206,43352..43495,44363..44468, 44589..44647)) /locus_tag="TRIUR3_07905" /codon_start=1 /product="40S ribosomal protein S3a" /protein_id="EMS66737.1" /db_xref="UniProtKB/Swiss-Prot:RS3A_ORYSJ" /translation="MAVGKNKRISKGRKGSKKKAVDPFTKKQWYDIKAPLLFTSRNVG KTLVSRTQGTKGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYMLRMFAIGFTKRRPN QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKA PKFDLGKLMEVHGDYKEDVGVKLDRPADGDEHLSCKGVGCGAQQGSEGTEEDTREGGS SPYREARARALRRGGSPCAARPTEEEEAAAAAAESAEESEQMEEAAKKRKIDMEEAAR QRQLDIEADNVKARQRQLDIEATNAATKAKEVALAIMSVDLSKMSDTARAWFEAKQKE MVDAEGLN" assembly_gap 27572..27922 /estimated_length=351 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 28597..33702 /estimated_length=5106 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <37768..>41256 /locus_tag="TRIUR3_07906" mRNA join(<37768..37971,38055..38331,38624..39840,39924..40071, 40473..40577,40922..>41256) /locus_tag="TRIUR3_07906" /product="Tetratricopeptide repeat protein 7A" CDS join(37768..37971,38055..38331,38624..39840,39924..40071, 40473..40577,40922..41256) /locus_tag="TRIUR3_07906" /codon_start=1 /product="Tetratricopeptide repeat protein 7A" /protein_id="EMS66738.1" /db_xref="UniProtKB/Swiss-Prot:TTC7A_HUMAN" /translation="MAAIMLCTCSGDQSKFEEMPRSPESLATRDFSASGSCSRPGKRE ATPDDSQVNEVESDLRETLSLNYEEARALLGRLEYQRGNFDAALQVLQGIDIRSLKPR MTSAVTESAKPKVSPRSSRRKTSQVNGMLVHMSMHSVSLLLEAILLKARSLERLGRVT DAAEECRTIIDIVESAWPDGVPEGTSEDCKLIDMFHSALEYLPNLWMKSGCFEEAITA YRRALARPWNLDSQRSANLQKDLAVTLLYCGIEVKSPQEFSQQRNLATPENNIEEAIL LLFVLIRKLTFQEIKWDPDLVNHLMYALSLSGHYEVLARHLEMLLPGTYSRSERWYVL ALCYSAAGMDDSALNIIRNGFRVLERKGKPHIPSLLLGAKLCCKNPKHASEGIKFANK ARESFRSHDMHFISAVNHFLGVCYGPFARSSTSHTEKMRLQDDALRLLQDAAATAKYN PEILYSLAWENAMQRKLNAAIESAAECLEMVTGSSVSTWKLLILVLSAQQNLEEAESV ADIALDEAEQEDQMGILRLKALIQSSRGQSKSAVESFRILLAIIQAKKEIWKLTPYDK VKSLHELEMEAWLDLASIYTKLEAWNDSNICLDKAKSIDFLSPKCWHVKDIKISKRTL YLFAIIFEFWLSHTIEVDITCMCLSNGLILEAQSLHQEALEAFSFSLSINPDYVPSMV SMASILRTLGAKSSSIARTFLRSATRLEPTNHQAWMGLGLVLKSEGSVLEAADCFQAA YELLELSPIQDFSEQLPILLQ" assembly_gap 44678..44936 /estimated_length=259 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 47658..49619 /estimated_length=1962 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 49899..49952 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 50585..50660 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 50874..52239 /estimated_length=1366 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(AOTI010117039.1:1..1744,gap(163),AOTI010117040.1:1..2835, gap(204),AOTI010117041.1:1..8742,gap(90),AOTI010117042.1:1..273, gap(110),AOTI010117043.1:1..2298,gap(733),AOTI010117044.1:1..4966, gap(392),AOTI010117045.1:1..4574,gap(161),AOTI010117046.1:1..286, gap(351),AOTI010117047.1:1..674,gap(5106),AOTI010117048.1:1..10975, gap(259),AOTI010117049.1:1..2721,gap(1962),AOTI010117050.1:1..279, gap(54),AOTI010117051.1:1..632,gap(76),AOTI010117052.1:1..213, gap(1366),AOTI010117053.1:1..589) //