LOCUS       KD013620               46484 bp    DNA     linear   CON 20-MAR-2015
DEFINITION  Triticum urartu cultivar G1812 unplaced genomic scaffold
            scaffold49945, whole genome shotgun sequence.
ACCESSION   KD013620 AOTI010000000
VERSION     KD013620.1
DBLINK      BioProject: PRJNA182347
            BioSample: SAMN00217315
KEYWORDS    WGS.
SOURCE      Triticum urartu
  ORGANISM  Triticum urartu
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
REFERENCE   1  (bases 1 to 46484)
  AUTHORS   Ling,H.Q., Zhao,S., Liu,D., Wang,J., Sun,H., Zhang,C., Fan,H.,
            Li,D., Dong,L., Tao,Y., Gao,C., Wu,H., Li,Y., Cui,Y., Guo,X.,
            Zheng,S., Wang,B., Yu,K., Liang,Q., Yang,W., Lou,X., Chen,J.,
            Feng,M., Jian,J., Zhang,X., Luo,G., Jiang,Y., Liu,J., Wang,Z.,
            Sha,Y., Zhang,B., Wu,H., Tang,D., Shen,Q., Xue,P., Zou,S., Wang,X.,
            Liu,X., Wang,F., Yang,Y., An,X., Dong,Z., Zhang,K., Zhang,X.,
            Luo,M.C., Dvorak,J., Tong,Y., Wang,J., Yang,H., Li,Z., Wang,D.,
            Zhang,A. and Wang,J.
  TITLE     Draft genome of the wheat A-genome progenitor Triticum urartu
  JOURNAL   Nature 496 (7443), 87-90 (2013)
   PUBMED   23535596
REFERENCE   2  (bases 1 to 46484)
  AUTHORS   Zhao,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2013) BGI, Beishan Industrial Zone, Yantian
            District, Shenzhen, Guangdong, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.05
            Genome Coverage       :: 90x
            Sequencing Technology :: Illumina Hiseq2000
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..46484
                     /organism="Triticum urartu"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold49945"
                     /cultivar="G1812"
                     /db_xref="taxon:4572"
                     /chromosome="Unknown"
                     /geo_loc_name="China"
     assembly_gap    1634..1691
                     /estimated_length=58
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2090..2179
                     /estimated_length=90
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2279..3244
                     /estimated_length=966
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    3495..3642
                     /estimated_length=148
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    4691..5976
                     /estimated_length=1286
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    15109..15274
                     /estimated_length=166
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    16124..16315
                     /estimated_length=192
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    17125..17494
                     /estimated_length=370
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <23900..>28375
                     /locus_tag="TRIUR3_34527"
     mRNA            join(<23900..24061,25492..25541,26037..26172,27118..27219,
                     27333..27560,27702..27786,27892..27974,28084..28175,
                     28291..>28375)
                     /locus_tag="TRIUR3_34527"
                     /product="UDP-glucose 4-epimerase GEPI48"
     CDS             join(23900..24061,25492..25541,26037..26172,27118..27219,
                     27333..27560,27702..27786,27892..27974,28084..28175,
                     28291..28375)
                     /locus_tag="TRIUR3_34527"
                     /codon_start=1
                     /product="UDP-glucose 4-epimerase GEPI48"
                     /protein_id="EMS67901.1"
                     /db_xref="UniProtKB/Swiss-Prot:GALE2_CYATE"
                     /translation="MNDAGDFYDDPWRMVHVYGPYCSRAEQSREEGGGYAKERCVGGI
                     RNRPLRGLDVVDLRDKEALDQIFSSQRFEAVIHFAGLKAVGESVEKPLLYYDNNLIGT
                     ITLLQVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSATNPYGRTKLVIEDICRDL
                     QRSDPDWKIILLRYFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVYGTD
                     YNTKDGTGVRDYIHVVDLADGHIAALRKLYEDSDRIGCEVYNLGTGKGTSVLEMVAAF
                     EKACGKKIPLVYAGRRAGDAETVYAATAKAEKELKWKAKYGVEEMCRDLWNWASKNPY
                     GYGSSD"
     assembly_gap    24185..24649
                     /estimated_length=465
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    35375..35433
                     /estimated_length=59
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    37155..40800
                     /estimated_length=3646
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    41029..44837
                     /estimated_length=3809
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AOTI010056481.1:1..1633,gap(58),AOTI010056482.1:1..398,
            gap(90),AOTI010056483.1:1..99,gap(966),AOTI010056484.1:1..250,
            gap(148),AOTI010056485.1:1..1048,gap(1286),AOTI010056486.1:1..9132,
            gap(166),AOTI010056487.1:1..849,gap(192),AOTI010056488.1:1..809,
            gap(370),AOTI010056489.1:1..6690,gap(465),AOTI010056490.1:1..10725,
            gap(59),AOTI010056491.1:1..1721,gap(3646),AOTI010056492.1:1..228,
            gap(3809),AOTI010056493.1:1..1647)
//