LOCUS KC539861 3549 bp mRNA linear ROD 21-MAY-2013 DEFINITION Mus musculus strain PWK/PhJ NLR family, pyrin domain containing 1a (Nlrp1a) mRNA, complete cds. ACCESSION KC539861 VERSION KC539861.1 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3549) AUTHORS Sastalla,I., Crown,D., Masters,S.L., McKenzie,A., Leppla,S.H. and Moayeri,M. TITLE Transcriptional analysis of the three Nlrp1 paralogs in mice JOURNAL BMC Genomics 14, 188 (2013) PUBMED 23506131 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3549) AUTHORS Sastalla,I., Crown,D., Masters,S.L., McKenzie,A., Leppla,S.H. and Moayeri,M. TITLE Direct Submission JOURNAL Submitted (28-JAN-2013) National Institute of Allergy and Infectious Diseases, National Institutes of Health, 9000 Rockville Pike, Bethesda, MD 20897, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3549 /organism="Mus musculus" /mol_type="mRNA" /strain="PWK/PhJ" /db_xref="taxon:10090" gene 1..3549 /gene="Nlrp1a" CDS 1..3549 /gene="Nlrp1a" /codon_start=1 /product="NLR family, pyrin domain containing 1a" /protein_id="AGH68337.1" /translation="MEESQSKQESSTKVAQHEGQEDVDPTFKTKKLMEVELMKHRVQL ERNLKLRTFPGARTKQVKEALYPLLTWSSKSKNLFQNFTKLLLYKKLCQRGSENLVRE SWYPCVPEEGAHMIDIQDLFGPNLGTQKKPQLVIIEGAAGIGKSTLARLVKRAWKEGK LYRNDFHHVFFFSCRELAQYEQLSLAELIVQGQEVPTAPIRQILSHPEKLLFILDGID EPAWVLADRNPELCLHWSQTQPVHTLLGSLLGKSILPEASFLLTTRTTALQKFIPSLE QPCQVEVLGFTLFERKNYFYKYFGKKKGGVTTFTLVKSNSALLTLCEVPWVCWLVCTC LKNQMEQGGELSLTSQTTTALCLKYLSLTIPGQHMRTQLRDLCSLAAEGVCQRRTLFS ESDLCKQGLDEHAIASFLKIGVLQKQASSLSYSFAHLCLQEFFAAMSYILDDSEERHA DMKNDRIVETLVERYGRQNLFEAPTVRFLFGLLSKEELKKIEKLFSCSLHGKTKLKLL WHILGKSQPHQPPCLGLLHCLYENQDMELLTHMMHDLQGTIVPGPDDLAHTVLQTNVK HLVIQTDMDLMVVTFCIKFCCHVRSLQLNRKVQQGHKFTAPGMVLYRWTPITDASWKI FFSNLKLARNLEELDLSGNPLSYYAVHSLCTTLRKRGCQIKTLWLVECGLTSTYCSLL ASVLSARSSLTELDLQLNDLGDGGVKMLCEGLRNPACNLSILWLDQASLSDQVIAELR TLEAKNPKLLISSTWKPHVMVPTMNMDKEEVGDSQALLKQQRQQSGDKHMEPLGTEDE FWGPTGPVTTEVVDRERNLYRVQLPMAGSYHCPSTGLHFVVTRAVTIEIEFCAWSQYL NKTPLQQSHMVVGPLFDIKAEQGAVTAVYLPHFVALQEGIVDSSLFHVAHFQEHGMVL ETPARVEQHYAVLENPSFSPMGILLRMIPAVGHFIPITSTTLIYYHLYLEDVTFHLYL VPSDCSIRKAIDDEEMKFQFVRINKPPPVDALYLGSRYIVSSSKLVEIIPKELELCYR SPGESQLFSEIDIGHMDSEIKLQIKDKRHMNLKWEALLKPGDLRPALPKIATAPKDAP SLLHFMDQHREQLVARVTSVDPLLDKLHGLVLSEDSYEVVRSETTNQDKMRKLFSLSR SWSWDCKDQFYQALKETHPHLVMDILEKLGGVSVKS" BASE COUNT 984 a 851 c 873 g 841 t ORIGIN 1 atggaagaat ctcagtccaa acaggaaagt agcacaaaag tggctcagca tgaaggtcaa 61 gaggatgtgg acccaacctt caaaacaaag aaacttatgg aggtggagct aatgaagcac 121 agagtgcagc tagagaggaa cttgaagcta agaacctttc caggagcacg tacgaagcaa 181 gtaaaagagg ctctttaccc tcttctaaca tggtcatcaa aaagcaagaa tctgttccaa 241 aatttcacaa aactactact ctataaaaaa ttgtgccaaa gaggctcaga aaacttggtc 301 agggaaagct ggtatccatg tgtaccagaa gaaggagcac atatgattga catccaagac 361 ttatttggcc caaacttagg tactcagaaa aagcctcaat tagtcataat agaaggagct 421 gctgggattg ggaagtcaac actggccaga cttgtgaaga gagcctggaa ggaaggcaag 481 ctttacagga atgacttcca tcatgtcttc ttcttcagct gcagagagct ggcccagtat 541 gagcagctga gtctggctga gctcatagta caaggccagg aagtgcccac agctcccatt 601 aggcagatcc tgtctcaccc tgagaagttg ctcttcattc tggatggcat agatgagcca 661 gcatgggtct tagcagaccg gaatcctgag ttatgtcttc actggagtca aacccagcct 721 gtgcacactc tgctgggcag tttacttggg aaatccatcc ttcctgaggc ttccttcttg 781 ctcacaaccc gtaccacagc tctacagaaa ttcattcctt ccctggagca gccatgtcaa 841 gtggaagtcc taggattcac tttgtttgaa cggaaaaact atttctacaa atattttggg 901 aagaaaaaag gtggagttac tacttttaca ttagttaaat caaactcagc gctcctgact 961 ctgtgtgaag ttccctgggt gtgctggttg gtctgcactt gcctgaaaaa tcagatggag 1021 cagggtggag agctctcact gacctcacag accaccacag cactctgcct gaaatacctt 1081 tccctgacaa tcccagggca gcacatgagg acccagctca gagacctctg ctcactggct 1141 gctgaggggg tctgccaaag aaggaccctg ttcagtgaaa gcgatctctg taagcaaggg 1201 ttagatgagc atgccattgc cagtttcctg aagattggtg tccttcaaaa gcaggccagc 1261 tctctgagct acagctttgc ccacttgtgt cttcaggagt tctttgcagc aatgtcctac 1321 atcttggatg atagtgagga aagacatgct gatatgaaaa atgacagaat tgtggaaaca 1381 ctggtagaaa ggtatggaag acaaaacctg tttgaggcac ccactgtgcg ttttttattt 1441 ggtcttttga gtaaagagga attgaaaaaa atagaaaagc tcttttcctg cagccttcat 1501 ggaaagacaa agttgaaact actatggcac atcctaggga aatcccaacc ccatcaacca 1561 ccttgcctgg gtttgctcca ctgtctgtat gaaaatcagg atatggagct cctgacacac 1621 atgatgcatg atctgcaagg aacaatagtg cctggaccag atgatttggc acacacagtg 1681 ttgcagacaa acgtgaagca cctggtgata cagacagaca tggacctcat ggtggttact 1741 ttctgcatta agttctgctg tcacgtgagg agtcttcagc tgaacaggaa ggtacagcag 1801 ggacataagt ttacggcccc tgggatggtt ctgtacagat ggaccccaat cactgatgcc 1861 agctggaaga ttttcttctc caatcttaag ttagccagaa acctggagga gttggaccta 1921 agtggaaatc cactgagcta ctatgcagta cacagtcttt gtacgaccct gagaaagcgt 1981 ggctgccaaa taaagactct gtggcttgtt gaatgcggcc tcacatccac atactgctca 2041 cttctggcct cagtactcag tgcccgctcc agcctgactg agctagacct gcagctgaat 2101 gacctgggtg atggtggtgt gaagatgttg tgtgaggggc tcaggaatcc tgcctgcaat 2161 ctcagcatcc tgtggctgga ccaggcatct ctcagtgacc aagtgattgc agagctcaga 2221 actctggagg caaagaatcc aaagctgctc atctccagca catggaagcc acatgtgatg 2281 gtccctacga tgaacatgga taaagaagaa gtgggtgata gccaggccct actgaagcag 2341 cagagacagc agtcaggaga caaacacatg gaacctctgg ggactgaaga tgagttctgg 2401 ggccctacag gacctgtgac tactgaggtg gttgacagag agaggaacct gtaccgagtt 2461 cagttaccca tggctggttc ctaccactgt cccagcacag gactccactt tgtggtgaca 2521 agggcagtga caatcgagat tgaattctgt gcctggagcc aatatctcaa caagactccc 2581 ttgcagcaga gtcacatggt ggttggacct ctgtttgaca tcaaggctga gcaaggagct 2641 gtgactgcag tgtacctccc tcattttgtg gccctccaag agggaatcgt ggacagctcc 2701 ttgttccatg ttgcccactt tcaagaacac gggatggtcc tagaaacacc agcaagggtg 2761 gaacagcatt atgcagtact ggaaaaccca agcttctccc cgatggggat tctactgaga 2821 atgattccgg ctgtcggaca cttcatcccc atcacttcca ccacactgat ctactatcac 2881 ctctatcttg aagatgtcac ctttcacctt tacctggtcc ccagtgactg cagtattcga 2941 aaggccattg atgatgaaga aatgaagttt cagtttgtgc gcataaacaa gccaccccca 3001 gtagacgctc tttatcttgg ttcccgctat atcgtgtctt cctccaaatt ggtggaaatt 3061 atcccaaagg aactagagct gtgctaccga agccctgggg aatcccagct cttctctgag 3121 atcgacattg ggcacatgga ttcagagatt aagctgcaaa tcaaagacaa gaggcacatg 3181 aatctcaaat gggaggcctt gctgaaacca ggggatctca gacctgcact gcccaagatt 3241 gctacagccc ccaaagatgc tccttccttg ctgcacttca tggaccagca tcgggagcag 3301 ctggtggccc gagtgacatc tgtagatcct ctcttggaca agctgcatgg tctggtgctg 3361 agtgaagatt cctatgaagt agtgcggtct gagaccacaa accaagacaa gatgaggaag 3421 ctcttcagcc tcagccggtc ctggagctgg gattgcaaag accaattcta ccaagctctg 3481 aaggagaccc atcctcacct ggtcatggat atacttgaga agttgggtgg ggtctctgtg 3541 aaatcctga //