LOCUS       KC222900                 786 bp    mRNA    linear   ROD 27-FEB-2014
DEFINITION  Rattus norvegicus strain DA.1H RT1-DMb (DMb) mRNA, complete cds.
ACCESSION   KC222900
VERSION     KC222900.1
KEYWORDS    .
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Tuncel,J., Haag,S., Yau,A.C., Norin,U., Baud,A., Lonnblom,E.,
            Maratou,K., Ytterberg,A.J., Ekman,D., Thordardottir,S.,
            Johannesson,M., Gillett,A., Stridh,P., Jagodic,M., Olsson,T.,
            Fernandez-Teruel,A., Zubarev,R.A., Mott,R., Aitman,T.J., Flint,J.
            and Holmdahl,R.
  CONSRTM   EURATRANS Consortium
  TITLE     Natural Polymorphisms in Tap2 Influence Negative Selection and
            CD4ratioCD8 Lineage Commitment in the Rat
  JOURNAL   PLoS Genet. 10 (2), E1004151 (2014)
   PUBMED   24586191
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Tuncel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2012) Department of Medical Biochemistry and
            Biophysics, Karolinska Institutet, Scheeles vag 2, Stockholm 17177,
            Sweden
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="DA.1H"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /haplotype="h"
     gene            1..786
                     /gene="DMb"
     CDS             1..786
                     /gene="DMb"
                     /note="RT1 class II"
                     /codon_start=1
                     /product="RT1-DMb"
                     /protein_id="AGV38997.1"
                     /translation="MAALWPLLLALSLGCIGAGGFVAHVESTCLLDDEGTPMDFTYCI
                     SFNKDLLACWDPEEGQIVPCEYGVLFKLAEFISNILNKEEGLIQRLKNGLQDCSTHTQ
                     PFWNALTHRTRTPSVQVAQTAPFNTREPVMLACYVWGFYPADVTVVWMKNGQLVTSHS
                     NKEKTAQPNGDWTYQTVSYLALTPSYWDIYTCVVQHSGTPEPIRANWTPGLSPIQTVK
                     VSVSAATLGLGFIIFCLGFFRWRKSHSSSYTPLPGSTYPEGRP"
BASE COUNT          173 a          237 c          204 g          172 t
ORIGIN      
        1 atggctgcac tatggccgct gctgctggcc ctgagtctgg gctgtatagg agcaggtggc
       61 tttgtggctc acgtggaaag cacgtgcttg ctggatgatg aagggacccc aatggacttc
      121 acatactgta tttccttcaa caaagatctg ctggcctgct gggatccaga ggagggacaa
      181 atagtcccct gtgaatatgg ggtcctgttt aagttggccg aattcatttc aaatatcctc
      241 aacaaggaag aaggcctgat ccagcgcttg aaaaatgggc ttcaggactg ttccacacac
      301 acccagccct tctggaacgc gctgacccac agaaccagaa cgccatctgt ccaagtagcc
      361 caaaccgctc cttttaacac aagggagcct gtgatgctgg cctgctacgt ctggggcttc
      421 tatccggcgg atgtgaccgt ggtgtggatg aagaacgggc agcttgttac ttcccacagc
      481 aacaaggaga agacggctca gcctaacggg gactggacat accagaccgt ctcctaccta
      541 gccttaaccc cttcctactg ggacatctac acctgcgtgg tacagcacag cgggacccct
      601 gagcccatcc gcgcgaactg gacacccggg ctgtccccca tccagacagt gaaggtctct
      661 gtgtctgcag ccaccctggg cctgggcttc atcatcttct gtcttggctt cttcagatgg
      721 cgcaagtctc actcctccag ctacactcct ctccctggat ccacctaccc ggaaggacgg
      781 ccctag
//