LOCUS KC215142 4237 bp DNA linear ROD 05-DEC-2013 DEFINITION Rattus norvegicus strain SHR/Akr Sry1 (Sry1) gene, complete cds. ACCESSION KC215142 VERSION KC215142.1 KEYWORDS . SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 4237) AUTHORS Prokop,J.W., Underwood,A.C., Turner,M.E., Miller,N., Pietrzak,D., Scott,S., Smith,C. and Milsted,A. TITLE Analysis of Sry duplications on the Rattus norvegicus Y-chromosome JOURNAL BMC Genomics 14 (1), 792 (2013) PUBMED 24228692 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4237) AUTHORS Prokop,J.W., Underwood,A.C., Turner,M.E., Miller,N., Pietrzak,D., Smith,C. and Milsted,A. TITLE Direct Submission JOURNAL Submitted (27-NOV-2012) Biology, The University of Akron, 302 Buchtel Ave, Akron, OH 44325, USA COMMENT ##Assembly-Data-START## Assembly Method :: sequencher v. 4.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4237 /organism="Rattus norvegicus" /mol_type="genomic DNA" /strain="SHR/Akr" /db_xref="taxon:10116" /sex="male" gene 1..>4237 /gene="Sry1" misc_feature 1..3727 /gene="Sry1" /note="contains promoter and 5' UTR" mRNA <3728..>4237 /gene="Sry1" /product="Sry1" CDS 3728..4237 /gene="Sry1" /codon_start=1 /product="Sry1" /protein_id="AGG39658.1" /translation="MEGHVKRPMNAFMVWSRGERRKLAQQNPSMQNSEISKHLGYQWK SLTEAEKRPFFQEAQRLKTLHREKYPNYKYQPHRRVKVPQRSYTLQREVASTKLYNLL QWDNNLHTIIYGQDWARAAHQSSKNQKSIYLQPVDIPTGYPLQQKQQHQQQQHVHLQQ QQQQQHQFH" BASE COUNT 1109 a 951 c 1011 g 1166 t ORIGIN 1 gatgagctat agctgatgtc cataccaaga aggcagttgg gcaggaaaag gagaggtgct 61 tctaatgtca ggatagaggg ggttccaggc cagaataatc aagggtttgg aagagaggct 121 agtacatatt ttggctattt gctgtgtgtg gatttctgtg gaatgctgga tcttttcctt 181 tggccgccta gccttagtca ctgcaacttc aggaatgtca atgcaggata gagtgtctca 241 aacacttgag gtcctttggt tgttgtattg gcttccccag cccttgtttg tcctctttgt 301 tctgaagaat tgaaacagtt ttggtccttg agggacattc tatgtcagac ctgtcactga 361 ccccaaggac cacacaggtc aacaagacag ggtcggagta gggccattct actcaggttt 421 caagctacac tgtggatgat gataggaccc ccagtgctct tgccctgtgt gatgggtttg 481 acacaagcaa tagataacta catttgactt ggtaaacttg ggggaaatag acagggcccc 541 tctcctaacc ctgacaaaga aacattattg gaaagcacct ggagaaggct ggaagaacaa 601 aagtactcaa ggacctggtt ctctaagcca ttatcatatt gttttggggt agtcccgtga 661 ggagaattat aaaggcagag gctatccatg gaataaatag caggcaaaaa gaatccatgg 721 ccaagtgcag cctgtacaca ttaccttagg tctctgctag gaaagttaga aggcagtctc 781 aggtagggag tcctctgatg cccttgatgg gagaaaaggg actctggatg ttatgatctg 841 gatggctggc agcgtgtgct tggagaaatg agacaggact gggactgaca tgccattcag 901 tgacactact ccctcagcaa ctggtagtca tgaggtgtta tccacgtgag gaaatagggg 961 tagagaaggg ctgtacttga ggatacaaag tggcaagatg ccaaaacatg cctttgccag 1021 tggatggaga gccaaagcca agggcagtgg cttggcagaa tggacggggg tcctttctgg 1081 agctgagtga ggaagtcaga gagaaaggta tttcctcctc ctaataggtt acatgcactc 1141 tcttaggaag acagcacaca gatcatcaat gcctccatca agagcaacca ggcaataaca 1201 ggctaccaga caaggcattt ggggcacttt aactcctgct tcagagtcct ggaggacaca 1261 ctaattgctc ctgcctcatg tgggaaatca cagaatgttg gccttgacag aattccctgt 1321 gccaccctcc agtgcagttc tcaatgttgg gatgtgacct cactagacac actgactcag 1381 acacaggatt caagagtaaa gtctgggttt ctgagagtaa cccagaaagc ccatccccgc 1441 agtgttagga aaggtgcagc ttcattgtca gcacggttat ggaactcccc aacttccatc 1501 ccatcagtgc cctcaaactg actttctcca caagtatcag cttttcctgt tattgtgtcc 1561 acaacacagg aaaactgcta ggcctcacct gggtgtctgg tgcccctcca ccttgactta 1621 tattgacaca gcagctgcag agcagggatt gatgagtctg aggatcatgg gggcttctcc 1681 agatcttccc ttgctgattc tcaagaagat gtggcccctt cctacttcaa ggtctacttc 1741 ttcaaggtct ggccaagacc tatccggcat gaatatacac agaatatgaa atgccagcac 1801 acaattgagg aaggctggct gggcattact cacagtgttt cctttactct tacttgaatt 1861 gagctggcat tcagactctc tgcctgaaag gactttgcct cagcatttcc cgaacaccct 1921 tcctgcccaa gagctgacaa acctttctgt gccttcttgg gccaagcaga caaatgtggt 1981 aggtccttct tgggccaagc agacatatgt ggtaggtcca tcttgggcca agcagacata 2041 tgtggtaggt ccttcttggg ccaagcagac atatgtggta ggtcattctt gggccaagca 2101 cacatatgtg gtaggtcatt cttgggccaa gcacacatat gtggtaggtc cttcttgggc 2161 aaagcagaca tatgtggtag gtccttgaag caaactggga gagacatagg cttggctgtg 2221 gatgttgaga aatacctgtc ctattgcctc acaggaggga cctctagcaa atggcttttc 2281 cctgacctgg aggtctgcat cttctgctcc ccacattact ctacttactg acattggctc 2341 ctctggtagg ccatctaccg tccactgaac taagagatgg tttgtctggc actctgtgaa 2401 gtgtctctgc ctgtgctaag agtcccccta ccatcccttg tatacactgc ttatcttctg 2461 gacaatgtgg tcaaatccag ataggtcagc agctctgtga actctcatat accaggctgc 2521 tcagccagga ttgcatgtgt tctccctcca gccttctctg tcggagagag aagtacttct 2581 ggatatccag acagatgtct tctgcagtga cctgaggcaa atgtctctag cttctggatg 2641 ggggtccctc tgcagcccac caaggctcag gacacatttt ttcagagtag agaatacagt 2701 agtgtgtttc tgttgtattt gtctgagtgt ctgtgtgatt atctgaatgt ggagtgtgtg 2761 tgtgtctgtg tgtatctgta aataattgag tctcaaatgc actttagcaa catgccagca 2821 acaactgttg ggtgtattga aataatccta ataacaatat ttttagtatt actacatagg 2881 aaatttgtac aaacgagctt tatgatgcat gtatatgaca aagagagaaa gaaaacttcc 2941 ttgagatata tgttgagttt taggttttgt agctttcaat tctaaaattc agcattacta 3001 ctgtttttgt ttttggtttt tctttgtccc attgtgtaga tctttatagt gggctattgc 3061 cctggacaga ctgattcttt ttcttcatgc catctcgctt actggactag gatacaattg 3121 attgttttcc tacttatctt tgaccctctc taccacttgt acatgcttgt ttatttctca 3181 gttagtccat cataaatatc atgtatgcta cagggcaaaa agaacggctt agtatgctca 3241 ttgttgtatc ttaatgcttg ttgcgaagaa atgaccaaag agaaagttgt atgtttttaa 3301 ggagtgtaaa agtgcagtct ctacatttac aatccacagg ggttttggtt gacaatatgt 3361 aggtttgtgt ggtggcttca aagtagatta gttgggctgg acgtgggagg tcccgaggga 3421 ggagggatga atattttctt acacacttta aatactaaaa tctttgttac aaacacagtt 3481 cggatactag cttttacccc ttacacttta tatcttgatt tctgtctctg tctgtctctg 3541 tctctctgtt tctgtctcta tctctgtctc tctcatccca tctctgactt cctggttgca 3601 atcctaattc ttccactaca ttcagcattt cagatcttca ctttcagtat tcagccctac 3661 agcctgagga catattaatc tctggagaag ggagagcttt gggagcagtg acagttgtct 3721 agatagcatg gagggccatg tcaagcgccc catgaatgca tttatggtgt ggtcccgtgg 3781 agagaggcgc aagttggctc aacagaatcc cagcatgcag aattcagaga tcagcaagca 3841 tctgggatat cagtggaaaa gccttacaga agccgaaaaa aggccctttt tccaggaggc 3901 gcagagactg aagaccctac acagagagaa atatccaaac tataaatatc agcctcatcg 3961 aagggttaaa gtgccacaga ggagttatac tttgcagcgt gaagttgcct caacaaaact 4021 gtacaacctg ctgcaatggg acaacaacct acacactatc atatacggac aggactgggc 4081 tagagctgca caccagtcct ccaagaacca gaaaagcatt tatttacagc ctgtggacat 4141 ccccactgga tacccactac agcagaaaca gcagcaccag cagcagcagc acgtgcacct 4201 gcagcagcag cagcagcagc agcaccagtt ccactag //