LOCUS       KB741094              162556 bp    DNA     linear   CON 10-APR-2013
DEFINITION  Dendroctonus ponderosae unplaced genomic scaffold Seq_1102840,
            whole genome shotgun sequence.
ACCESSION   KB741094 APGK01000000
VERSION     KB741094.1
DBLINK      BioProject: PRJNA162621
            BioSample: SAMN01121785
KEYWORDS    WGS.
SOURCE      Dendroctonus ponderosae (mountain pine beetle)
  ORGANISM  Dendroctonus ponderosae
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga;
            Cucujiformia; Curculionidae; Scolytinae; Dendroctonus.
REFERENCE   1  (bases 1 to 162556)
  AUTHORS   Keeling,C.I., Yuen,M.M., Liao,N.Y., Docking,T.R., Chan,S.K.,
            Taylor,G.A., Palmquist,D.L., Jackman,S.D., Nguyen,A., Li,M.,
            Henderson,H., Janes,J.K., Zhao,Y., Pandoh,P., Moore,R.,
            Sperling,F.A., Huber,D.P., Birol,I., Jones,S.J. and Bohlmann,J.
  TITLE     Draft genome of the mountain pine beetle, Dendroctonus ponderosae
            Hopkins, a major forest pest
  JOURNAL   Genome Biol. 14 (3), R27 (2013)
   PUBMED   23537049
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 162556)
  AUTHORS   Keeling,C.I., Yuen,M., Liao,N.Y., Docking,R.T., Chan,S.K.,
            Taylor,G.A., Palmquist,D.L., Jackman,S.D., Nguyen,A., Li,M.,
            Henderson,H., Janes,J.K., Zhao,Y., Pandoh,P., Moore,R.,
            Sperling,F.A.H., Huber,D.P.W., Birol,I., Jones,S.J.M. and
            Bohlmann,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2013) BC Cancer Agency, Canada's Michael Smith
            Genome Sciences Centre, Suite 100, 570 West 7th Avenue, Vancouver,
            British Columbia V5Z 4S6, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: ABySS v. 1.3.0
            Assembly Name         :: DendPond_male_1.0
            Genome Coverage       :: 443.0x
            Sequencing Technology :: Illumina GAII
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..162556
                     /organism="Dendroctonus ponderosae"
                     /mol_type="genomic DNA"
                     /submitter_seqid="Seq_1102840"
                     /isolation_source="bolt of a lodgepole pine tree felled
                     from along the Kay Kay Forest Service Road"
                     /host="Pinus contorta"
                     /db_xref="taxon:77166"
                     /chromosome="Unknown"
                     /sex="male"
                     /dev_stage="pupa"
                     /geo_loc_name="Canada: Prince George, BC"
                     /lat_lon="54.043775 N 123.309222 W"
                     /collection_date="2006"
                     /note="single pupa"
     assembly_gap    1565..1610
                     /estimated_length=46
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    4408..4457
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6290..7533
                     /estimated_length=1244
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    7606..8036
                     /estimated_length=431
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    9815..9845
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    10035..10650
                     /estimated_length=616
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    10729..11005
                     /estimated_length=277
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    13881..13923
                     /estimated_length=43
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    14050..14099
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    16235..19133
                     /estimated_length=2899
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    22809..24140
                     /estimated_length=1332
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    24210..24441
                     /estimated_length=232
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    24528..24623
                     /estimated_length=96
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    33404..34080
                     /estimated_length=677
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    35906..36069
                     /estimated_length=164
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    36348..36609
                     /estimated_length=262
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    45307..47850
                     /estimated_length=2544
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    47942..48300
                     /estimated_length=359
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    53935..54014
                     /estimated_length=80
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    54383..54543
                     /estimated_length=161
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    55029..61510
                     /estimated_length=6482
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    69146..69709
                     /estimated_length=564
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    75503..75947
                     /estimated_length=445
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    79041..79699
                     /estimated_length=659
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    83873..86899
                     /estimated_length=3027
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    89694..90015
                     /estimated_length=322
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    90148..90197
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    95882..97448
                     /estimated_length=1567
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <103264..>108866
                     /locus_tag="YQE_09503"
     mRNA            join(<103264..103462,107674..107764,108000..108214,
                     108466..108610,108773..>108866)
                     /locus_tag="YQE_09503"
                     /product="hypothetical protein"
     CDS             join(<103264..103462,107674..107764,108000..108214,
                     108466..108610,108773..>108866)
                     /locus_tag="YQE_09503"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="ENN73895.1"
                     /translation="SGDGGSPAIWECPLCLAELTPDDFCELNACGHRACITCFQHYLR
                     VEITESRVCISCPECLEPMHPNEIKSILSNPALFEKYEDFMVRRVLAVDPDTRWCPAP
                     DCNFAVIASECASCPKLRCERPGCHSYFCYHCKAEWHPNQTCDAARAQRSPNLRSSSV
                     AYSQDSQHRDDIKPCPRCQVLIVKMDDGSCNHMMCAVCGAEFCWLCMKEINDLHFLRK
                     KKILWQLGTLVGAPIGIALVAGITVPAMVI"
     assembly_gap    106047..106628
                     /estimated_length=582
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    109411..109855
                     /estimated_length=445
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    109933..110449
                     /estimated_length=517
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    111783..115394
                     /estimated_length=3612
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    115538..115982
                     /estimated_length=445
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    116060..116509
                     /estimated_length=450
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    119059..120501
                     /estimated_length=1443
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<121707..>123858)
                     /locus_tag="YQE_09504"
     mRNA            complement(join(<121707..122533,122838..123100,
                     123157..123435,123586..>123858))
                     /locus_tag="YQE_09504"
                     /product="hypothetical protein"
     CDS             complement(join(122939..123100,123157..123435,
                     123586..>123858))
                     /locus_tag="YQE_09504"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="ENN73896.1"
                     /translation="VVPDIQAFKSETCLEDTENDLTLPIPKCYYAHYSPGESEREIIP
                     PSFALVLENIKPQGFQSENFAIGLDLNQARAAIEAIAKVHSFSLCLKIFQGQILLEKY
                     PFLFQTSQASDSYQQLVERDLPQLFEFLESKTELQHILKKFNELRPHTKEIIENLLSA
                     EEPMALITHTDFWCNNLMFREVQGVCECTILDWQMVTYSRPTNDIALLLVGSVPADLR
                     REHTDRLLDLYWAKLTQDK"
     assembly_gap    123929..124407
                     /estimated_length=479
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    124493..128427
                     /estimated_length=3935
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    131575..134759
                     /estimated_length=3185
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    137000..140697
                     /estimated_length=3698
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    141773..141822
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    143841..148292
                     /estimated_length=4452
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <150033..>160489
                     /locus_tag="YQE_09505"
     mRNA            join(<150033..150305,154164..154340,159526..>160489)
                     /locus_tag="YQE_09505"
                     /product="hypothetical protein"
     CDS             join(<150036..150305,154164..154340,159526..160131)
                     /locus_tag="YQE_09505"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="ENN73897.1"
                     /translation="MITPLLAGLAVGIGVPILLFYVYGVVPVSLCRNGGCGGSSASEE
                     LSTPAPDTSSVDAISTKEPANPSIGEVSLSLASGSHRDADRESASTVALAGSLHQAAQ
                     RLEVQADLASAQRFSLSSLTESVNASITLDDGGASVRALAGSLMNYKQVNGSDSCSCL
                     TTEDGTSERVRFDDNVSFIAANQAEKTSIGSSCSFRARCSKSNMGKASPAQDTLSNDS
                     IYIDMDDKTPRKFSSQAAALRSQFFHSINECKPASKSLDDKTIIEVSNETLDKTMVPV
                     IKETKSIVICQLRPASASSIVSFNDQLKVDGSSNKNCSSESLHNSSVPLITESQNIVI
                     RPVKMSSTIMHESTQL"
     assembly_gap    150372..150521
                     /estimated_length=150
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    150586..153406
                     /estimated_length=2821
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    153482..154153
                     /estimated_length=672
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    157112..157155
                     /estimated_length=44
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    157830..159293
                     /estimated_length=1464
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <162028..>162526
                     /locus_tag="YQE_09506"
     mRNA            join(<162028..162139,162219..>162526)
                     /locus_tag="YQE_09506"
                     /product="hypothetical protein"
     CDS             join(<162028..162139,162219..>162526)
                     /locus_tag="YQE_09506"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="ENN73898.1"
                     /translation="MNIVADWPGSTHDSTIFNSCRLKARIEIGEFGNNVLLGDSGYGL
                     KSYLLTPLLNPSNESQRLYNECHIRTRNCIERTIGVWKRRFPVLAYGLRCKLETSLTV
                     IVATAVLHNIAQEMNEADPPPPENLSIDEFHYLIESGN"
CONTIG      join(APGK01047941.1:1..1564,gap(46),APGK01047942.1:1..2797,gap(50),
            APGK01047943.1:1..1832,gap(1244),APGK01047944.1:1..72,gap(431),
            APGK01047945.1:1..1778,gap(31),APGK01047946.1:1..189,gap(616),
            APGK01047947.1:1..78,gap(277),APGK01047948.1:1..2875,gap(43),
            APGK01047949.1:1..126,gap(50),APGK01047950.1:1..2135,gap(2899),
            APGK01047951.1:1..3675,gap(1332),APGK01047952.1:1..69,gap(232),
            APGK01047953.1:1..86,gap(96),APGK01047954.1:1..8780,gap(677),
            APGK01047955.1:1..1825,gap(164),APGK01047956.1:1..278,gap(262),
            APGK01047957.1:1..8697,gap(2544),APGK01047958.1:1..91,gap(359),
            APGK01047959.1:1..5634,gap(80),APGK01047960.1:1..368,gap(161),
            APGK01047961.1:1..485,gap(6482),APGK01047962.1:1..7635,gap(564),
            APGK01047963.1:1..5793,gap(445),APGK01047964.1:1..3093,gap(659),
            APGK01047965.1:1..4173,gap(3027),APGK01047966.1:1..2794,gap(322),
            APGK01047967.1:1..132,gap(50),APGK01047968.1:1..5684,gap(1567),
            APGK01047969.1:1..8598,gap(582),APGK01047970.1:1..2782,gap(445),
            APGK01047971.1:1..77,gap(517),APGK01047972.1:1..1333,gap(3612),
            APGK01047973.1:1..143,gap(445),APGK01047974.1:1..77,gap(450),
            APGK01047975.1:1..2549,gap(1443),APGK01047976.1:1..3427,gap(479),
            APGK01047977.1:1..85,gap(3935),APGK01047978.1:1..3147,gap(3185),
            APGK01047979.1:1..2240,gap(3698),APGK01047980.1:1..1075,gap(50),
            APGK01047981.1:1..2018,gap(4452),APGK01047982.1:1..2079,gap(150),
            APGK01047983.1:1..64,gap(2821),APGK01047984.1:1..75,gap(672),
            APGK01047985.1:1..2958,gap(44),APGK01047986.1:1..674,gap(1464),
            APGK01047987.1:1..3263)
//