LOCUS KB304411 205020 bp DNA linear CON 19-MAR-2015 DEFINITION Capitella teleta unplaced genomic scaffold CAPTEscaffold_355, whole genome shotgun sequence. ACCESSION KB304411 AMQN01000000 VERSION KB304411.1 DBLINK BioProject: PRJNA175705 BioSample: SAMN02769627 KEYWORDS WGS. SOURCE Capitella teleta ORGANISM Capitella teleta Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Sedentaria; Scolecida; Capitellidae; Capitella. REFERENCE 1 (bases 1 to 205020) AUTHORS Simakov,O., Marletaz,F., Cho,S.J., Edsinger-Gonzales,E., Havlak,P., Hellsten,U., Kuo,D.H., Larsson,T., Lv,J., Arendt,D., Savage,R., Osoegawa,K., de Jong,P., Grimwood,J., Chapman,J.A., Shapiro,H., Aerts,A., Otillar,R.P., Terry,A.Y., Boore,J.L., Grigoriev,I.V., Lindberg,D.R., Seaver,E.C., Weisblat,D.A., Putnam,N.H. and Rokhsar,D.S. TITLE Insights into bilaterian evolution from three spiralian genomes JOURNAL Nature 493 (7433), 526-531 (2013) PUBMED 23254933 REFERENCE 2 (bases 1 to 205020) AUTHORS Hellsten,U., Grimwood,J., Chapman,J.A., Shapiro,H., Aerts,A., Otillar,R.P., Terry,A.Y., Boore,J.L., Simakov,O., Marletaz,F., Cho,S.-J., Edsinger-Gonzales,E., Havlak,P., Kuo,D.-H., Larsson,T., Lv,J., Arendt,D., Savage,R., Osoegawa,K., de Jong,P., Lindberg,D.R., Seaver,E.C., Weisblat,D.A., Putnam,N.H., Grigoriev,I.V. and Rokhsar,D.S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (19-DEC-2012) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://genome.jgi.doe.gov/Capca1 JGI Project ID: 16637 The DNA was provided by Daniel Rokshar(dsrokhsar@lbl.gov) The strain is available from Daniel Rokshar Contacts: Daniel Rokshar (dsrokhsar@lbl.gov) Igor Grigoriev (ivgrigoriev@lbl.gov) Assembly and annotation done by JGI. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Genome-Assembly-Data-START## Assembly Method :: JGI Jazz Assembler v. 10/16/2006 Assembly Name :: Capca1 Genome Coverage :: 7.9x Sequencing Technology :: Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..205020 /organism="Capitella teleta" /mol_type="genomic DNA" /submitter_seqid="CAPTEscaffold_355" /strain="I ESC-2004" /db_xref="taxon:283909" /chromosome="Unknown" assembly_gap 322..371 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2453..3414 /estimated_length=962 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <7548..10135 /locus_tag="CAPTEDRAFT_184506" mRNA join(<7548..7821,8725..8876,8938..9039,9162..9219, 9272..9424,9475..10135) /locus_tag="CAPTEDRAFT_184506" /product="hypothetical protein" CDS join(7548..7821,8725..8876,8938..9039,9162..9219, 9272..9424,9475..10085) /locus_tag="CAPTEDRAFT_184506" /note="GO_function: GO:8083 - growth factor activity; GO_process: GO:40007 - growth" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02050.1" /db_xref="InterPro:IPR001111" /db_xref="InterPro:IPR001839" /db_xref="JGIDB:Capca1_184506" /translation="MSWTKAGYVVVLFVLLIIADDVAASSTNDLRQQAIERLSRVFEV DRVPQQRFRRSPPEYMANLYDQVAYTDGISRSPNPYEADIVRGFLDKATFHQMHYAFN VSHLSNQEAVLEAELHLFKLRSPPPPPSSSDLHPSASLSHLRLYQVLDESAMHSPEGL RLLHQRRLSVHQNGWQIFKVGDTVLQWINDSSTNFGFLVTATLGTGHSVNETGVRFAQ RGQHHDSKQPVLVTFTDRARSDHFALNMADSVERIDAPSLPGNGQLASARREYIRFLN EGFRAQNGGTPLRKIRHYMTPEMHRQLTTSTQMSNPALRHRSRRSSSTRSKKSKRSQA NFNRFNRRKKKSCQRQELYVDFDEIGWSGWIISPKGYNAYHCKGACPFPLGQNQKPTN HATVQSIVHALRIGKEVEMPCCVPNKLFSISLLYFDDDENVILKQYDDMVAASCGCH" gene <11292..>15210 /locus_tag="CAPTEDRAFT_218108" mRNA join(<11292..11413,12007..12207,13139..13163,13892..14094, 14878..14937,15108..>15210) /locus_tag="CAPTEDRAFT_218108" /product="hypothetical protein" CDS join(11292..11413,12007..12207,13139..13163,13892..14094, 14878..14937,15108..15210) /locus_tag="CAPTEDRAFT_218108" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02051.1" /db_xref="JGIDB:Capca1_218108" /translation="MAMVVPIRRDCRRLKDEKTTNTAQISRETQLKPKVTKGQRRPLF IVQKPNIRLLKERFGAVGHLRESAHSSADRQQHISSKALLLIVGCSDDACEELRSAQN HRITVRNRRTDAMLDYCHGFSINFQAQIVALSSLHKVLTVDCSDYHPFFTVRANDCSK YRSSFVTTDARQDDLDHLHNQHRTECTKKYIEFSCIKSFPRLVSDRSMTILKALKGKK EKHQYSYQAECSGEKTGHI" gene complement(<22046..>22657) /locus_tag="CAPTEDRAFT_218109" mRNA complement(<22046..>22657) /locus_tag="CAPTEDRAFT_218109" /product="hypothetical protein" CDS complement(22046..22657) /locus_tag="CAPTEDRAFT_218109" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02052.1" /db_xref="JGIDB:Capca1_218109" /translation="MGLKSDWWKAVNRIAMDYNLDGVYYMLKYRRLSAEGKRLARIPD GWVEKKAKEKVERNVTQRDLEKWRGKLKGMERTRRYAENRKDLRMERYPDSGDGVRVR MMVRGDSLMVRASANVAWRYDEDERNCVCGKEETKKHILFECPLYERHRIEWNKVWKM EKGQEDPMNGVLGFEVSSEMDCLILRSVGAIWREREKQERERE" assembly_gap 23500..23549 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<31874..>34448) /locus_tag="CAPTEDRAFT_218110" mRNA complement(join(<31874..31915,32791..32880,33493..33572, 33611..>34448)) /locus_tag="CAPTEDRAFT_218110" /product="hypothetical protein" CDS complement(join(31874..31915,32791..32880,33493..33572, 33611..34448)) /locus_tag="CAPTEDRAFT_218110" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02053.1" /db_xref="JGIDB:Capca1_218110" /translation="MQSLKLRQLLLSIAACLMGLLLLAGVFHPELGTNLVDYASSQRP PKMNATTTSRNMSSSYEKACGKSSVFYDLESALKDRASDDGTIILAGLVDAGYIDLGV NLHISSIVPHNICNILYIAVDPHQIGRTQEYDMPVYFHQTNLSHNLDIFGTEGFRNKT IVKLDVTYLALKMGYKVLLTDLDLFFRHNPIPFIKCGDDCDFAAQNNSYGKFVYNSGF IFLKNNERTKQFYRKMTKEAMTTSADDQNLFNGVQWKIPGLKGKFLDSDVFCVGLTDS RPSWEDKKTYEEWDVAARVKVHRPNNEGSQLSDENGTINDVSTYKECGDLFGSDFTRQ VQGREKTNIFSYTTG" assembly_gap 36304..36353 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 39190..41336 /estimated_length=2147 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 43375..43424 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <43460..>44868 /locus_tag="CAPTEDRAFT_218111" mRNA join(<43460..43515,43564..43656,43849..43987,44047..44139, 44188..44304,44353..>44868) /locus_tag="CAPTEDRAFT_218111" /product="hypothetical protein" CDS join(43460..43515,43564..43656,43849..43987,44047..44139, 44188..44304,44353..44868) /locus_tag="CAPTEDRAFT_218111" /note="GO_component: GO:5634 - nucleus; GO_function: GO:8168 - methyltransferase activity; GO_process: GO:6139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02054.1" /db_xref="InterPro:IPR007757" /db_xref="JGIDB:Capca1_218111" /translation="MKRMKTRKKSTQTPALSSKVPKAPILTTITVRTLLTPESALRIT SGMLVRYMHCDLDTYDMRDLDSKFDVILIEPPLEEYQRYLGVSREKFWSWQDIENLQI ESIAAQRSFIWIWCGFGEGLDAARRCLRKWGFRRCEDICWIKTNIKNPGHNKNLGPKA IFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLIIEEEFPPGSDEKPVEIFHIIEHF CLGRRRLHVFGRDLSIRPGWMTIGPDVTNTNYNAKTYNAYFNKTPDGFLTGCTEEIER LRPKSPPAKMKDGKGSGRGGRGGGGNKGGGGARGGGGRGNFSGRGGFQGRGRGGQRSG PPR" gene complement(45780..49947) /locus_tag="CAPTEDRAFT_184508" mRNA complement(join(45780..45998,46053..46364,46417..46752, 46805..46902,46951..47075,47130..47186,47240..47304, 47362..47574,49852..49947)) /locus_tag="CAPTEDRAFT_184508" /product="hypothetical protein" CDS complement(join(45912..45998,46053..46364,46417..46752, 46805..46902,46951..47075,47130..47186,47240..47304, 47362..47574,49852..49890)) /locus_tag="CAPTEDRAFT_184508" /note="GO_function: GO:4222 - metalloendopeptidase activity; GO_process: GO:6508 - proteolysis and peptidolysis" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02055.1" /db_xref="InterPro:IPR001431" /db_xref="InterPro:IPR007863" /db_xref="JGIDB:Capca1_184508" /translation="MKAVGRPTMSAIRTRGFAAQAAAKQQQPAKQDIHVSKQANGMVV AALENQAPVSRLAVYMKAGPRNEQPGEVGICHVMRNAANFTTQGASAFGLVKNMQQMG ANFTCATTRESMVYNLECTRDKVEKAVDYLVDVTCKPVYFPWEISDSKPQFQLDLGLL EGNPLAELSEALHQAAYRDGLGRSLYMPSHKIGTYTSEMLADYFLRNYTGSNMALVGV GIDHDTLSHLAAKFRFENNAKTPVSGSGYHGGEIRLDRPGAMVHAAVVTEGAGLALSV LQHAMGTGPCIKYSNNAATSRVGKAAAQATDNPVAASCVMSAYSDSGLFGFQVSCLAD DADKVLRSVKTAFADATKAGFTEQEVSAAKAQLKARYMMFLENSSNLVEDIGFQALTL GSVYDMEDGLKMIDAVTVDDVNKAAKKFINGKPTMAAVGDISKIPYLDQLL" assembly_gap 48596..48901 /estimated_length=306 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <58046..>60806 /locus_tag="CAPTEDRAFT_218115" mRNA join(<58046..58190,58330..58626,58678..59053,59104..59187, 59239..59410,59460..59574,59624..59697,59745..59958, 60013..60173,60225..>60806) /locus_tag="CAPTEDRAFT_218115" /product="hypothetical protein" CDS join(58046..58190,58330..58626,58678..59053,59104..59187, 59239..59410,59460..59574,59624..59697,59745..59958, 60013..60173,60225..60806) /locus_tag="CAPTEDRAFT_218115" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02056.1" /db_xref="JGIDB:Capca1_218115" /translation="MDSKVLNLKTHLRGVCAITESFLDNRFPSDDTQAPKFISLLCNM ISDESSCLMFIEETKFLSKVDYQLKCDPSEELLTFQMHVLSHVFITVASDLIPNLKSC LEALLRKPFLTPSWEKPSVRYAWIQSLGKILKGKQDEGLEMVLSEDFLVTLMKCYDDS SIFVGKEAVVLTAKLLWQLLIMTKHQDPILKLTEQIFSLSPISTSYKCNILRVREVLE TLNKLAVGSFDVLNEFLSVNNVRQKLLMTLKSVALTSDTVSVQALASSLALPFWRDDK ELFNLARNLFEEDHVPLPSLIIFKSVISKDEMNNARELISMPFMLSTRNSISSCDWLK SFMKKHKRKADQIIVHCLDLHKSLNPTEDDFVLLTELLTTGSNPLVSCRILQVLSDFM TNSQGVTLPVCNLLSVCLNLIKEVGCHQRVLTEVFHCILSTLAVRNAADILVVEISCD SLSGAIFGEVLSDIVQRKLCDLEWEIRDTSVEFLCCILTQLKGDKDMLDWLTANNLLM QAKQCLSDGERYVRASAIKTLTAAIKWNDLWIHFKNSKCNIVDQIINVIKTDSEAFPR RAAVEFISEIHFIDNSAAAHTIPIMKIAIDDFDWQVKLSVLEFWNKYWKSLERDDAIE HFTQIAGSLLIDGILDCDRSVQKLACSITVDIYSDYITCSSSALVEMEKKPEKDWKLD EFSKALASLDVEKRLREASRSIDEYDENPSSLLTDLMTSLNPSAIDPDADQFMIDCY" gene complement(60914..69307) /locus_tag="CAPTEDRAFT_229205" mRNA complement(join(60914..61187,61239..61446,61500..61673, 61725..61855,61908..62160,62211..62330,62378..62467, 62516..62703,62751..62895,62944..63336,63389..63435, 63485..63559,63606..63708,63762..63878,63925..64031, 64272..64440,64493..64621,64673..64843,64901..65162, 65210..65349,65393..65557,65614..66207,66559..66624, 66676..66744,66797..66865,66916..67062,67113..67204, 67303..67376,67464..67536,67603..67773,67827..68139, 68192..68283,69159..69307)) /locus_tag="CAPTEDRAFT_229205" /product="hypothetical protein" CDS complement(join(61033..61187,61239..61446,61500..61673, 61725..61855,61908..62160,62211..62330,62378..62467, 62516..62703,62751..62895,62944..63336,63389..63435, 63485..63559,63606..63708,63762..63878,63925..64031, 64272..64440,64493..64621,64673..64843,64901..65162, 65210..65349,65393..65557,65614..66207,66559..66624, 66676..66744,66797..66865,66916..67062,67113..67204, 67303..67376,67464..67536,67603..67773,67827..68139, 68192..68283,69159..69168)) /locus_tag="CAPTEDRAFT_229205" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02057.1" /db_xref="InterPro:IPR001680" /db_xref="JGIDB:Capca1_229205" /translation="MAQLWQHPYVNVFKHFNVQSWKKCSKEGEVTTVMDRQLKSTVHK ITGSIPAGNFIQLPKTSSQSLGLTGRFMYLLFRPLPGKYFVVHIDVATQDGMVVRVSF SNLFKEFKSTSTWLQFPFLCHAAKGSVSGQASIGGREHAGPAPHSAAWTVLCLDMQHI LSLYLNRRYSYIKNIKLCANMLLKNIFTSDSEYDPGEEIRRLTSWLDSNATRDVVHLA EGFPVEANKKPFDSIQFSDVKPSSKPGPKRVAAKTVISQAVTDRVNLVQRVAGPKRGA RKVVTELPAVGVDESGGALDITPTNDGEIHVYANPSENITVHQNRNNKVITSRTKPPS MVLPQKDEASSYQSLKPDPILRLKRIVGFGGTSTKHALWTQNGATVVYPSHAVVVAMQ MVVTWNIDRVTKGGQVSVMAKAHTDVDICRIRIAAFDDTRMVSCGRDNVRLWRVKDGS LRSAPVNLGEHHCMEFTDCCFEAGYDPARDPLDKLVYACSKLGHILEIDSRKVNVLHV RRLLPSEPKSRKDKIAFSSGSGIAINCMSINEAFCATGSEDGFLRLWPLDFKHVYLEA EHEGAVTAVDLSSEGTKILAGTCTGNLGILDVSTRGYTTIMRSHTSRISSFSIDTMRR HVATVAEDHTIRVWDLDTMQQLFDFSAPKECPCAIAYHPHQQVFACGFETGAVRIFNV ANTSMLAEHKQHRGKVVGLVFAPRGDYLYSAGSLGSLAIYDCSGDTYRLVRLLGNTLA KGESHAPHALAISPDGTRVAFIGPTDFTISIVEARSLDEVMRIDITNLQPADSNRSCI DTACQVAYAPSQVKQLLVTTSSNKLLKFDARTGKILAEIEHIHRNGCSALDVSQDGRH LVTAGDKVIKVWDYHMKLDLNFQVFIGHAETISRVAFTPDNSSFVSVGEAMLVWDFLA CHQEAPEAGGRNLQKNYFTGESFNNVVSEASDESDEVVIQADDHLDSRLSGHEAPSVE VDNNRTTLSTSLLSNKEAEIPSVQQHFRPRVKQHDLAQRRYTAPPNQAGLKLKSVLGY NGNGRGNMVWNADTGTFAYTSGCTIVVEDLNSGSQDLLQGHNEEISTLALQHDCQILA SASGPSGLSSSQICIWDLSSMTCKKVLSHHDNQIVSLAFSRDDRFLVSVGDYRDCSIV VWSTQSLSLLTSTRTPSPIHVLAWDPSSVNEFASVGSDIRFWLLDETSQQVSLNVHEA SLPEDLVEPHTMGAQQMVFTCLEYADDSTLYIATNNGKVTAWDTRHNTCFMHWEADAV EIDVLISRQGRLVTGSCSGSLRLWSVAGIPDMREQGTLSKGLTIEDDMVLGGALVSAA FDETMDMGIVGTACGTLWYINWTERNSLRLVSGHNAKISGMCMCDDLFLATSDLSGSL RIWSVADREQTVQFQVKDQSCLCLAFSPVKPIAPRLNSSVTSSAGSTVVCHSQPKTSE QLILPNIVAGYSDGTVRMFDLNAVEMVLKMHPHATATTAISFSSDGRMIISGGSDGLI AISSPTTGITVRVITDHKGAPICSLDVTTLQEQDFGITSPQLWLASSADRRVSVWSAD WSKDFCELVDWLTFPAPAFTPEGTVLRKGEQGYYDQVPPSLAKFSREEPDIVVYTGYG MQRNIQFYSLAQRKVLRTITLTHWASSLDLCLSTPLIGVGIKERLVKLFDYYEGSFQD FVGHEHSVGLMKFSPDGKTLFSASETELFQWQILV" gene complement(<71533..>76488) /locus_tag="CAPTEDRAFT_218117" mRNA complement(join(<71533..72372,73393..73579,75269..>76488)) /locus_tag="CAPTEDRAFT_218117" /product="hypothetical protein" CDS complement(join(71533..72372,73393..73579,75269..76488)) /locus_tag="CAPTEDRAFT_218117" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02058.1" /db_xref="InterPro:IPR005135" /db_xref="JGIDB:Capca1_218117" /translation="MYLRNHSLMTMLTPKKTNTKTTMGTTLNLGSWNSRGHGPDRLIY IEHLLQKCNILLIQEHWLFDSELSKLAYNSSTEITVMGSSGMDPEKLLVGRPYGGCAL LYKTCLRCSITPIPVVSRRIFACIIDMVEFPKFILINAYMPCDSHNIVLNDEYKEILN DVESVIVLHHEIDHVIIGGDLNTDISRVRSVHSAMLKEFCTRLSLRFCLSSPKNTVGF TYNNEATGAQSVLDHFIVSENLFGSIESSYSCLHEGDNLSDHLPVCLNLDVKASFAPQ SNAHALNRPSWQRATVQDKAAYQLRLKELLREVDIPFDVFSCRPFECVCQDHGRMIEQ YYSDVMSAMITASKECIPSRSKKKAAWWSTYVSHLQEESIFWHRIWLSSGRPRTGWVQ DIRKKTRAQYKRISSCDASLLCMLGAPLSSFVQDQWKRSVSDGEAALASAVAELRDVV RGHLSSILSIAEARRLLLEKKRGKRWTYQDRCTGTKRQLGYILVRRKWRNSVLNAEPY SSFCSVGSDHRVVSMKVRLSLRAPKTNPRIVYDWKTFAADSEMQEKYTVEVRNRFQIL EDEEDPSSRYQRFIEANMEATRTCVPRRKRVKASSSSKHPDIVQAREKMEEASRKLEE TGSDENGEQLKEAKELLFNTYDRLKEEKAIEACDRIQAAHGDGRYSEAWKVVNEMTEK KKAKEGQVAGASPEERVATWFTHFKNLLGTVPSEENSEGNISLCTQTLTSMTAHLPEK SMPKSSHL" gene <85290..>89902 /locus_tag="CAPTEDRAFT_229206" mRNA join(<85290..85435,85495..85543,86464..86605,86655..89044, 89100..89320,89372..89445,89506..89620,89683..>89902) /locus_tag="CAPTEDRAFT_229206" /product="hypothetical protein" CDS join(85290..85435,85495..85543,86464..86605,86655..89044, 89100..89320,89372..89445,89506..89620,89683..89902) /locus_tag="CAPTEDRAFT_229206" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02059.1" /db_xref="InterPro:IPR001715" /db_xref="JGIDB:Capca1_229206" /translation="MAAKVKALQQWCKRQCEGYRDVTVTNMTSSWKSGLAFCAIIHRY RPDLIDYDSLKKEDVFDNNKLAFDVAQNELNIPALLDPEDMVEMTVPDKLCIVTYVSQ YHNYFRKFEPAGGPGVTATRTPSKRPLPSLTRSEVTDSKKAKEQKEASLNQQTMKQIS PSDLQNGNAEPPKKYGTLGDRCCVCSQKVYIMERHMEGSKLYHRKCLRDLQRSSWSPT QKNFRETPPWNLEKRPLDQVDAPKAQEGKSHDLVKTLCGAPSVYKGFNASAKAVTPME VERPPPRPGHLPVGSSMDNNARKTRRDMPPRSMDSKSVKQKPDDSKVLSGLMMNLEKV RQHNAVSSVEKDSQPKAMLKPVEVPAKSAREPAKHVWEPVKPVREPFKPVTEPGKPFK DPVKPFKEPVKTGWEPVKPVMGRVKEPVETFPVARNRSTSPPKSILKHFDPVTSPSES APCPELGRSSSPPKSILKHTEFSPDTKQEDAPRRSILKRGSFDSESDEWDESLSTSPH RKKSILKGRGTDSGGSDPDSGPNSRVTSPSRSILKNSTEWLASPEPDDSPRRILKQSP LDHKESPRSILKKSLETPDASPVRSHVRLLPLITTPKDDKPKGILKTRSDDEGEKSVK TTWSPALLKAKKSPGAPSVSTSFAQNGNNEKPAWQVEAERRQKARGGKYVDPEKKHLL TSEDAKTADPMRAKSPVASAEVSRVKPEASVRPKKKQAPPPPAPVDIKKEHKTPQRNG HPLDKEMVVPPVNVPCYLGMNMNDILQKQMSLKKSRPPSTVQQYPIPSGPVDPVHSYH VPSPPPSPPPSLPPRKARIIRSPAFRIADEDAEQQQQDQNNNPPSPSAKRRILPDTDF SFSASRDFGLLDKLDGVSRTSPVPPGLPSFPPPPPPTHQWDSGDDHMNIPKRRVNAEA RMATLQIVQTLEGLDDQLRGLEEYGRDLEEKIRGGTDEAMDEDELMAQWFELVNQKNE LVRKESELMYRQRQQELEDLHEELEYDLRCLMDKPEDQKTSSDKIREDALLKELLDTV SQRNNIVDSMEEDRIRYMEEDQEIAEMLAQTSSSQKKKKKKNKKKEKKQKVKTPELSS SPDFEIDEIDCEKEREKDKKKGKFFGFSAS" gene complement(90989..94266) /locus_tag="CAPTEDRAFT_165907" mRNA complement(join(90989..91371,91427..91527,91581..91813, 92012..92108,92158..92220,94175..94266)) /locus_tag="CAPTEDRAFT_165907" /product="hypothetical protein" CDS complement(join(91255..91371,91427..91527,91581..91813, 92012..92108,92158..92220,94175..94229)) /locus_tag="CAPTEDRAFT_165907" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02060.1" /db_xref="InterPro:IPR007914" /db_xref="JGIDB:Capca1_165907" /translation="MWNTPKAGYSAQTQKLLKDMMQESKLNNFQKRQLNKVVSDGSNL PSSCHPTSSAKPRLHPQPRPQSKVINPREHSVQIRTKEEIESTGAYEREQFIPMPMSR YRGFYEEDKIRLANMMAYGEDLPPKNVKKARAMGKPKPQPKVDRFDELEKEVEERRSF LEEMVSLGKGHEYKAIIETEISRLIRDMELIDKKRSDELARLIAAEQKESTSSGIPHA SLS" assembly_gap 92628..92677 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 93669..93718 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 94349..101283 /locus_tag="CAPTEDRAFT_184514" mRNA join(94349..94442,97350..97590,97642..97742,97884..97996, 98045..98163,98217..98284,98334..98388,98438..98559, 98605..98761,98813..98941,99041..99115,99176..99256, 99312..99413,99470..99597,99949..100048,100179..100298, 100358..101283) /locus_tag="CAPTEDRAFT_184514" /product="hypothetical protein" CDS join(97354..97590,97642..97742,97884..97996,98045..98163, 98217..98284,98334..98388,98438..98559,98605..98761, 98813..98941,99041..99115,99176..99256,99312..99413, 99470..99597,99949..100048,100179..100298,100358..100441) /locus_tag="CAPTEDRAFT_184514" /note="GO_function: GO:3824 - catalytic activity; GO_process: GO:8152 - metabolism" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02061.1" /db_xref="InterPro:IPR000873" /db_xref="JGIDB:Capca1_184514" /translation="MAALRILLPRILSRPALWRHGNERFLSKTPCLSRDLNSVEPSAA GFNDYEAERRNFNMFVPEYYNFAKDVIDVWAAKEKSGVRDATPAFWWIGEKPGEEVKW SFADLSEKSKRVAHLLSSACGLKRKDKVIVILPRVPAWWLVNIACIRNGTILIPGTCQ LTARDIKHRILRSTAECLIVDDATADKVDQILPECPHVKAKILVGKASPGRKHDGWLM FDELYESANSEYTDVLTKSKDTMTIFFTSGTTGEPKMTEHSHASYGLAHHITGKYWLD LCQKDIHWSMSDTGWAKCAWSNLFAPWLRGACVFVHRLYKFDPLQVLQTLDDYPITTF CGPPTAYRMMVLEDMSKYKMASLRHCVSAGEPLNPDVMEQFFDGTGQIIREGYGQTES VLQCGIYRCIPNKPGSMGKPPPGIDLRIVNENYQEVKPGEEGLIGIKVKPHRPLGLFS RYLNEPVRTLSAFKGDYYITGDRAVQDEEGYFWFVGRADDIIISAGYRIGPFEVESAL IEHPAVAESAVVSSPDAERGEVVKAFIVRTNEFKDVNEEELINDLQTFVKEITAPYKY PRKIEFVDSLPKTPSEKIRRVDLREREWKK" assembly_gap 105260..105309 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 106391..106440 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<108664..>110239) /locus_tag="CAPTEDRAFT_218121" mRNA complement(join(<108664..109342,110235..>110239)) /locus_tag="CAPTEDRAFT_218121" /product="hypothetical protein" CDS complement(join(108664..109342,110235..110239)) /locus_tag="CAPTEDRAFT_218121" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02062.1" /db_xref="JGIDB:Capca1_218121" /translation="MGNNSLTSIDPRTGKIVRFHLWPHPDKVGETLWDFVDNYNLNSI IERKPVTLPSLVQSLTLFDRFVAFGDSWSFINPRTQKALSIPSHQGWRVVLQSMKGGC IELLLDRNFSFVSLRKFNQDHVENLHSRIRSFNGNNQHPMVSEYVNAIRCLACAASTT ELLDRDINKGQNCLPDGELGIQSASGSSPSLAEESEVQQYERMLAIPALEENMLRDFS RWRGDRRPG" assembly_gap 114509..114558 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<114827..>120115) /locus_tag="CAPTEDRAFT_218122" mRNA complement(join(<114827..114963,115501..115666, 115727..115954,116008..116132,116184..116364, 116669..116849,116913..117109,117268..117365, 118295..118502,120062..>120115)) /locus_tag="CAPTEDRAFT_218122" /product="hypothetical protein" CDS complement(join(114827..114963,115501..115666, 115727..115954,116008..116132,116184..116364, 116669..116849,116913..117109,117268..117365, 118295..118502,120062..120115)) /locus_tag="CAPTEDRAFT_218122" /note="GO_function: GO:3824 - catalytic activity; GO_process: GO:8152 - metabolism" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02063.1" /db_xref="InterPro:IPR000873" /db_xref="JGIDB:Capca1_218122" /translation="MATKKKLNSTHSFTCLIQVDSGSGDKYTFAELQNAVHNIAGHLH VLDFSKGSNLALCATNCAEILLMAYASWKLGGVVTFLNPLLKPGETRGQIAKAKVDFI FMDKEQYQKLIEVIPDDITIVTKDGVEGVPSFSSLKEPISWEMPSFTPDVEARAAIFF SSGTTGPPKAVSLSHKNFLTEIHGINTLLEADMLMNPKWTSVVVYLPLSHAYAFILST LDMTIGATTILMPRFDPKKYLQLITDYQTELMILVPPIAVLFAKNKDLVAQFDLSCVQ SMFCAAAVLLPEVAADLQKIIPTKAKYIAQAYGMTEVSGASHWTPSESFMEKHGSPDS TTNVGVIIPNYKIAIRDLETGEFLPAYKTGEICTSGPGVMMGYLGNKDATDATIGADG WLKTGDIGYYDKNGYFYIVDRLKELIKYKGYQVSPSELEDLLLSHPKIADAGVVGFPD LESGELPSALIVLKPGEDLSVDQIREFVSEKAAPFKKLRGPVEIVPQIQKSASGKILR RVILSDFLEKHGNREK" gene complement(<122936..>123736) /locus_tag="CAPTEDRAFT_218123" mRNA complement(join(<122936..123142,123344..>123736)) /locus_tag="CAPTEDRAFT_218123" /product="hypothetical protein" CDS complement(join(122936..123142,123344..123736)) /locus_tag="CAPTEDRAFT_218123" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02064.1" /db_xref="JGIDB:Capca1_218123" /translation="MEEIVTNYHYNRDEASFKTLIEETVKKSVAEVTESLQKTVNDLK DTVSAAFRKQDEKVSDLEEQLQRAETENKNLRSKLAKVATTIAIKDTDKDVYSRKWNG IIHGIPGQAKEHEQATERKVRDMAAQNLKKSLAIEETLHRNRKKKAAKVIYSRTWPYI TLKHGDGSYYHPKNCADDLVRHFYGQDINIDDIDINDML" assembly_gap 131636..133091 /estimated_length=1456 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <135917..>137643 /locus_tag="CAPTEDRAFT_218124" mRNA join(<135917..136097,136165..136318,136598..136812, 137600..>137643) /locus_tag="CAPTEDRAFT_218124" /product="hypothetical protein" CDS join(135917..136097,136165..136318,136598..136812, 137600..137643) /locus_tag="CAPTEDRAFT_218124" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02065.1" /db_xref="JGIDB:Capca1_218124" /translation="MNIETNPMDMTLRNVRLNGFASKEICTACLKVDSSQLDSKKVME LATNIESCSLMAEDLSAPVSTRYKKKPIKLKTEDHMAGVDPISDAREVNALPEIQNVL AVEGLVIGRRAFGDRLVENLGSKVMSMTFNRCFQIGDGCKNPILGRDLSEEIGYISFP PIQQSKIPSLPITPEIYKIPTKETETGQFRHVFFGVV" assembly_gap 137891..140977 /estimated_length=3087 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(141967..>145143) /locus_tag="CAPTEDRAFT_165912" mRNA complement(join(141967..142349,142526..142644, 142701..142820,142867..143009,143065..143124, 143196..143365,143411..143551,143605..143687, 144341..144456,144509..144563,144626..144714, 144770..144825,145065..>145143)) /locus_tag="CAPTEDRAFT_165912" /product="hypothetical protein" CDS complement(join(142159..142349,142526..142644, 142701..142820,142867..143009,143065..143124, 143196..143365,143411..143551,143605..143687, 144341..144456,144509..144563,144626..144714, 144770..144825,145065..145143)) /locus_tag="CAPTEDRAFT_165912" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02066.1" /db_xref="InterPro:IPR001680" /db_xref="JGIDB:Capca1_165912" /translation="MAAAYSQALALDARYNAYRTPNNPQFRTLYIRRRSQLLRESAKK ENDPTARKDYIKIRASLLSQRYGAPALSEQSSMRSRTVSIRSMNKSNIASLESLDLVG RSKMERSSSRHLGFDGSAGPVPTSVAEASRAMGGDKSIGENYAFAGMHHIFDQHKAAV TSVKFAHDDKSRLACSSLDSQISICQIVPPPATVICVLDGHKKGVTVDFVWSLSNDSI LSTSLDGTTRLWDVASGSCLRLMQDPGGAMVLCCSFQPLNNNIFVTGNADQKVHVHNL STGKVIKGGSAKVLGRVLCLCFDATGHLLWTGDDHGFIFSFLFDVASGKLTKAKRITV CEGSPVTCMSARMWISREARDPSLLANCGVNALCLFKIATEDGSLQLKRTFPIKQQRE AVRSTFCPLMSFRQGACVVTGSEDCSVYFFDIEREQKQCLNKLQGHSAPVLDVCFNYD ESMLASCDSQGLVIVWKRELKGV" gene 145205..149943 /locus_tag="CAPTEDRAFT_184521" mRNA join(145205..145375,147383..147528,147579..147699, 147751..147829,147878..147997,148056..148141, 148193..148311,148372..148510,148560..148660, 148714..149075,149124..149296,149789..149943) /locus_tag="CAPTEDRAFT_184521" /product="hypothetical protein" CDS join(145217..145375,147383..147528,147579..147699, 147751..147829,147878..147997,148056..148141, 148193..148311,148372..148510,148560..148660, 148714..149075,149124..149296,149789..149920) /locus_tag="CAPTEDRAFT_184521" /note="GO_component: GO:5622 - intracellular; GO_function: GO:4527 - exonuclease activity" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02067.1" /db_xref="InterPro:IPR006055" /db_xref="JGIDB:Capca1_184521" /translation="MAKTREAKKETDESVDKKKNGVTKKQTRTDSKRRKLKAYKAILS INGKELQPKVTLSFELIPHRLPMVRLSEDGAISNYYLPVDVKQLINYSLHGQLNQLPR CCKFIARSLVPKCCLIVVRNLGADDVNYELFPSLKTHFFEGFPMTSPIGYCSTIAEEL FGQVPAHKDAELRTVSTHDKFSRTRLLLTPLQMSRERIPMPISNWRETATYAGFQYTK ASYDPVTSDSPLLAVDCEMCLTAGGRKELTRVSITDESHNILYDTYVKPDTEIVDYLT RFSGVTEEIMNSCTMTLADVQKDFQRILPADSILCGHSINFDLNALKLFHPYIIDSST IYNLSGMSNKKEGLKRLSEKFLRSYIQMSDAGHCSKEDASATMKLIQLKLRNDYRFGN VLLNGQIEAPNKDTDLAVPTDLLPTSLRVIHLQKHTDFNTKKEKISSKLFRPNSDPQR NVYFYRKSVHDFSSQCLLETLAQSERRAAIVCHGSDCNAFASKNSSVIEVSCRKQCSK LFRSSIETNYLIYAQMQAAERTQSKLQRLDRTIGRMYDALPKNSLACVVFEGREDADR CLNGMVFCALKR" gene <152206..>154716 /locus_tag="CAPTEDRAFT_218127" mRNA join(<152206..153150,154678..>154716) /locus_tag="CAPTEDRAFT_218127" /product="hypothetical protein" CDS join(152206..153150,154678..154716) /locus_tag="CAPTEDRAFT_218127" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02068.1" /db_xref="JGIDB:Capca1_218127" /translation="MVSMIAMPSETPTGYALKHLPRPNRRGGGLALIQSSAIHTTPLC NISRPSFEGFETNISHKKCSICLVAIYRPPSSSPAKYFNEFSDVMSSIIATCNDIIIV GDFNIHLDTPHIPSAKGLISIMDDMNLYQHVHEPMHINGHTLDFVMTFSLTPVHVQVN EVDRSVSSDRFAVLFKLYFDRPPNVKRKFCVRKWKAIDIAALNDEINRLPLSTGDPSS VYTQCMNSITQRLAPPTEIVIEKTKCHRLERKWRRGSLTVDREIYQSQCRQLRLSRDK AKSDFIHGKLRNTSSPNDTHTILNHLLHKQKRVDLPQHDFSTGSLSLSLVV" gene complement(158764..163489) /locus_tag="CAPTEDRAFT_165918" mRNA complement(join(158764..159436,159494..159586, 159711..159880,160608..160706,160756..160825, 160876..161134,161186..161298,163178..163489)) /locus_tag="CAPTEDRAFT_165918" /product="hypothetical protein" CDS complement(join(159410..159436,159494..159586, 159711..159880,160608..160706,160756..160825, 160876..161134,161186..161298,163178..163237)) /locus_tag="CAPTEDRAFT_165918" /note="GO_component: GO:16020 - membrane; GO_function: GO:5488 - binding; GO_process: GO:6810 - transport" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02069.1" /db_xref="InterPro:IPR001993" /db_xref="JGIDB:Capca1_165918" /translation="MQQDFFLKEKTVAMIETLLQSPLIKSTLAGSLSGTCSTLLFQPL DMLKTRIQSPKALGCNPGAINIAITVVRSEKLKGLWRGCVPSLTRTVPGVGVYFGSMN WLRTTFGSSDPSAWESVAIGGCARTVAGVTMLPFTVIKTRFESAQFQYKGMGNALATI YKGEGVKGLFSGMRATLLRDVPFSGLYLLMYDRSKKVVREYQLVSTPTAPMVHFSCGI CSGFVAAVVTQPADVVKTHMQLDPSKYHSVRFVIHNIYAKDGVHGFFRGTVLRTMRRS MMAAFAWTFFEEMIKRVGLN" gene <175273..>180522 /locus_tag="CAPTEDRAFT_218129" mRNA join(<175273..175595,178475..178591,178760..178841, 179238..179379,180362..>180522) /locus_tag="CAPTEDRAFT_218129" /product="hypothetical protein" CDS join(175273..175595,178475..178591,178760..178841, 179238..179379,180362..180522) /locus_tag="CAPTEDRAFT_218129" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02070.1" /db_xref="JGIDB:Capca1_218129" /translation="MDFDNRLRLHNPANGVSDNAWIDGDDEPWYLDDEDNQVDEVIRA VVSPRRRRSMPRCKQTWHSDSSEPDIGAAPEEVDIEQLLAESLELSPILERVDYQGFS ARNMHSQPLHTGAASQLHTLGDDVMIQRRYDSRRSVDLASQFKERFEQDQLLIEVFIF GAPIICWGPTQEHSRKGFSHSQTLPEFPKCEVPGSPPDIRSSLRVQVLTSRSRNRTKS QDSGIQPSFILLADPFMCFCHKRSISPRTKFRLGCSQCTLEFNSSRNKLLLIADTV" gene <194288..202422 /locus_tag="CAPTEDRAFT_184525" mRNA join(<194288..194385,196017..196260,196768..196831, 198875..198988,199045..199233,199358..199472, 199596..199697,200023..200158,200376..200489, 200540..200764,200820..200986,201041..201162, 201216..201508,201563..202422) /locus_tag="CAPTEDRAFT_184525" /product="hypothetical protein" CDS join(194288..194385,196017..196260,196768..196831, 198875..198988,199045..199233,199358..199472, 199596..199697,200023..200158,200376..200489, 200540..200764,200820..200986,201041..201162, 201216..201508,201563..202267) /locus_tag="CAPTEDRAFT_184525" /codon_start=1 /product="hypothetical protein" /protein_id="ELU02071.1" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR003961" /db_xref="JGIDB:Capca1_184525" /translation="MILSFSALFGAVERQDMETARMMLDSNGLDVNRVNDDDLTVLDI AIMSNHVPMAKMLLSHGAKENPQCESILTPLADPFSYLWRPFNAKYSRRVDHPLTLSK HGQTDKQFRAKWLNHMDYRLKLMRRMKSGYDHAQCPEPPTNVQLSVSSSSSLLVHFNE PNHHNGAVVTRYKVEWSCFEDFSVIAGEQVIDDPRCLQYEIPDLVQGNCYYVRVSAWN VKGFGDPCPSCPVSATPSSWREVSGLPPRCEGKLNLLDGVFAGLQEIKTKEGVEKSNQ NGVSPMPPRKSTVRKSIKNLFSSAPKFQKTLKRGVYLACLLCSEDRILVTNEDIMPII EVDESYSSASLNSDFHWLMKISCNWEDVKSLRREIDKSTSAGVMPFRSKLLQACSQLQ SVLGVQDLGQLHHSPIRDSDGSVVLIAVNYIKDPKVVTSTHVKWVSLGKVQRRVSSTV EQSESPLAPESLLSAVPELLSYARLSTFSLNRGLYLGYLKLKSSVDLIRIMVPEALPN VLPHIKIRDCPNISKEEWQWFRNLTLNEMRCPPTPAQSDFQSLLTSACSNLLEHLGIS EDEGVSHRLYDVEVIELSEDVSFLLLLPPVEGVCSVPGHQEDTPAQRALQCLSLPVQV FEMIHMSTYQREHLHRFCRASCALETDAHLAQQAQREAFSSEEVSVAKQRVDKLNSLQ QTLDEAWKGLRWTLDIIAYARDKTLRGGLPLSILFAPPPSPTDSPSISRKEATTSAND VASSTCSDCGYHSDISSLDSQRDGAAEEAAPEEIWFRACRQPGILRVYAAYETGLARG TSVKLHVTPKTTSREVVNLVVQQLNKAVLCRGLQAPVYGVDELRDFCLVAVIGARERV LRDEYQPLQLQNPWTKGRLYVRLQANLLAAIEHGHVTTV" CONTIG join(AMQN01009007.1:1..321,gap(50),AMQN01009008.1:1..2081,gap(962), AMQN01009009.1:1..20085,gap(50),AMQN01009010.1:1..12754,gap(50), AMQN01009011.1:1..2836,gap(2147),AMQN01009012.1:1..2038,gap(50), AMQN01009013.1:1..5171,gap(306),AMQN01009014.1:1..43726,gap(50), AMQN01009015.1:1..991,gap(50),AMQN01009016.1:1..11541,gap(50), AMQN01009017.1:1..1081,gap(50),AMQN01009018.1:1..8068,gap(50), AMQN01009019.1:1..17077,gap(1456),AMQN01009020.1:1..4799,gap(3087), AMQN01009021.1:1..64043) //