LOCUS KB301649 332316 bp DNA linear CON 19-MAR-2015 DEFINITION Capitella teleta unplaced genomic scaffold CAPTEscaffold_287, whole genome shotgun sequence. ACCESSION KB301649 AMQN01000000 VERSION KB301649.1 DBLINK BioProject: PRJNA175705 BioSample: SAMN02769627 KEYWORDS WGS. SOURCE Capitella teleta ORGANISM Capitella teleta Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Sedentaria; Scolecida; Capitellidae; Capitella. REFERENCE 1 (bases 1 to 332316) AUTHORS Simakov,O., Marletaz,F., Cho,S.J., Edsinger-Gonzales,E., Havlak,P., Hellsten,U., Kuo,D.H., Larsson,T., Lv,J., Arendt,D., Savage,R., Osoegawa,K., de Jong,P., Grimwood,J., Chapman,J.A., Shapiro,H., Aerts,A., Otillar,R.P., Terry,A.Y., Boore,J.L., Grigoriev,I.V., Lindberg,D.R., Seaver,E.C., Weisblat,D.A., Putnam,N.H. and Rokhsar,D.S. TITLE Insights into bilaterian evolution from three spiralian genomes JOURNAL Nature 493 (7433), 526-531 (2013) PUBMED 23254933 REFERENCE 2 (bases 1 to 332316) AUTHORS Hellsten,U., Grimwood,J., Chapman,J.A., Shapiro,H., Aerts,A., Otillar,R.P., Terry,A.Y., Boore,J.L., Simakov,O., Marletaz,F., Cho,S.-J., Edsinger-Gonzales,E., Havlak,P., Kuo,D.-H., Larsson,T., Lv,J., Arendt,D., Savage,R., Osoegawa,K., de Jong,P., Lindberg,D.R., Seaver,E.C., Weisblat,D.A., Putnam,N.H., Grigoriev,I.V. and Rokhsar,D.S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (19-DEC-2012) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://genome.jgi.doe.gov/Capca1 JGI Project ID: 16637 The DNA was provided by Daniel Rokshar(dsrokhsar@lbl.gov) The strain is available from Daniel Rokshar Contacts: Daniel Rokshar (dsrokhsar@lbl.gov) Igor Grigoriev (ivgrigoriev@lbl.gov) Assembly and annotation done by JGI. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Genome-Assembly-Data-START## Assembly Method :: JGI Jazz Assembler v. 10/16/2006 Assembly Name :: Capca1 Genome Coverage :: 7.9x Sequencing Technology :: Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..332316 /organism="Capitella teleta" /mol_type="genomic DNA" /submitter_seqid="CAPTEscaffold_287" /strain="I ESC-2004" /db_xref="taxon:283909" /chromosome="Unknown" gene complement(1116..8442) /locus_tag="CAPTEDRAFT_162608" mRNA complement(join(1116..1615,4334..4392,5322..5495, 5593..5744,8171..8442)) /locus_tag="CAPTEDRAFT_162608" /product="hypothetical protein" CDS complement(join(1512..1615,4334..4392,5322..5495, 5593..5744,8171..8278)) /locus_tag="CAPTEDRAFT_162608" /note="GO_function: GO:5515 - protein binding" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05291.1" /db_xref="InterPro:IPR001478" /db_xref="JGIDB:Capca1_162608" /translation="MGECKEVSLRKMDTAQSWGFKLKGGVDMGMPLHLENCNPKGRAA AAGLGVGDTILSICGTNITQMTSMQIKQELLRAGNDLDLIIRNTCTKTCTTIFHCNTS FPRNGMQAFGGVAPGGPAAQRDEPRVQVVEESIPSLGGPKSKIIICRPQWLILTSSLV QSSMLAPKPASIFNRKKDDRSGYLHAKGPTIQKAYGES" assembly_gap 2088..2137 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3351..4052 /estimated_length=702 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5256..5305 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7505..7554 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(12101..>18228) /locus_tag="CAPTEDRAFT_227291" mRNA complement(join(12101..13890,14363..14417,14476..14569, 18099..>18228)) /locus_tag="CAPTEDRAFT_227291" /product="hypothetical protein" CDS complement(join(12670..13890,14363..14417,14476..14569, 18099..18228)) /locus_tag="CAPTEDRAFT_227291" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05292.1" /db_xref="JGIDB:Capca1_227291" /translation="MAEHTRYNAVNNCSQSKKKKIQSWHLLRFPSPERIRNRQVRLKA PINLLKVLLPLFAVIAIFSLLTALWLKCKYTERIKNYLNVPIERVQTTERPMTERINN KTSDYVCLGDSCEASSSSSTNSSELSPSSTQTKHSSLSSSSGFSGDSPNPSSVTSSEL PPSDPSSSSGFTGDSSKTSSFTSSDDLCPPTSTSDSQSSSSGINSSPSLTSNQGPSSS TGVYMRVRYKDITPKEPAKEICVDSNDRDLLAVCLSNNTSDCSSVGLESPIEDDYCRQ AKIHSSAPLEEPNEIRVDDDDPELAAHLAKRVETPCSSQSTVLEMSTESKKRHSPHQS AAGDFESETVVDSSCSIEMENLGDAGTTSDHDAEEVPSDVEGTDATADVQVESSQCIL TQFGDKADNFPSSILPSITRSNILPSLSDTNSVPESRILPSFCIPTPSTSPFHLDGGV SPDEGIHSMEFPENGTISEDPSDRLEEDLDGNIPTYGGHYITGAHESQA" gene complement(<19857..>26517) /locus_tag="CAPTEDRAFT_212023" mRNA complement(join(<19857..19966,20275..20589,20647..20809, 20857..20993,21033..21191,21245..21388,21446..21599, 21654..22013,22067..22170,22220..22376,22431..22567, 23601..23782,24292..24418,24488..24781,26442..>26517)) /locus_tag="CAPTEDRAFT_212023" /product="hypothetical protein" CDS complement(join(19857..19966,20275..20589,20647..20809, 20857..20993,21033..21191,21245..21388,21446..21599, 21654..22013,22067..22170,22220..22376,22431..22567, 23601..23782,24292..24418,24488..24781,26442..26517)) /locus_tag="CAPTEDRAFT_212023" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05293.1" /db_xref="InterPro:IPR003961" /db_xref="JGIDB:Capca1_212023" /translation="MCARGFLVLLWLLTIGQIGAIFEHGDIKPDGDQYLFPGDTFQAE CILDPDYEHYDLFNASDMYFMGGVDIIHEHTHPSAHASLTLTLKNVSESDVGKFYCAL NTSKLQLRSDELLAATSLTIMDPPKPVEKFKCISDNFESMTCDWCDDPSVGQDYVKHI LYWKISWPVECAKGAFECRCHFGVGKENHFFKGYNYSMVVVSSNQAGVLRNQSAVSKT FHVDPRFIVKPAQVGRATATSSANRTAVINFKRPTSLAIALFYQVNLTSKWGEEFVID NISSASDVSVLAPHLTPATSYDIVIRCKPEVGGYWSDEVFIQVSTQVEAPDAPPVLPV GAFRLQPSSDCTGRKDCRELHLFWAPMEEKLQNGVIERYTVTYQSLEGEPESVSVPPN TLHRKLYIGLDLTFISLSASTSAGEGPSVSFHVENSSNVPAHPKIEYVERLSTDAVFF KWEIPPLEESVNGFTLLGCQGHPSVQACTGAIWNVSLAANVSQYLHNGYNSEDVYALT SNVGGSSSGMQDSWLCVYTATDNPEAPIIALQSMQEERSLRVQWDPLQCNQALNNPRI QNYVIYFTEEESNITSSLEVPQPQGKALIPHLKPFTFYQVWMCAVSVNNKTGLMSDRI ITQTLESVSLPPAPDLPPSNVNIVTIMSDRVLVEWSETAAPNGNISGYVITISADGLP VEHEASPLDRSAWVDGLYGYTNYSAVVYAATSAGLSPPSASQHFFTPVGAPGPVAILN ATNTDSDKYLTVHWSPPDPANGPLDHYTVHFDWTRHGINASTFDDTNVPFYEWVAPCE ADGEYEVITTVRAVNHNGTDMLRGETSQPLAVTVCSDPGMNSWETILRQVVDRHSGKI AETNSLEMADERHLAG" gene <31192..>32071 /locus_tag="CAPTEDRAFT_212024" mRNA join(<31192..31215,31432..31680,31973..>32071) /locus_tag="CAPTEDRAFT_212024" /product="hypothetical protein" CDS join(31192..31215,31432..31680,31973..32071) /locus_tag="CAPTEDRAFT_212024" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05294.1" /db_xref="JGIDB:Capca1_212024" /translation="MGGKQRALVRPRSTAVSQYLDTNFKDRLTGKRREEADKAYKIPG MREVAYSIKGEAVDTTNARVQGTNERGQTRSKHTSCATPQGGHHYSKLEALSVQVLSG RLGARSYGKTYYLGLSFYGGY" assembly_gap 38703..39694 /estimated_length=992 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 43358..43407 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <47992..>51027 /locus_tag="CAPTEDRAFT_212027" mRNA join(<47992..48007,48962..>51027) /locus_tag="CAPTEDRAFT_212027" /product="hypothetical protein" CDS join(47992..48007,48962..51027) /locus_tag="CAPTEDRAFT_212027" /note="GO_function: GO:3676; zinc ion binding - nucleic acid binding [PMID 8270]" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05295.1" /db_xref="InterPro:IPR006572" /db_xref="JGIDB:Capca1_212027" /translation="MDLSHECLSKMIGALRGRRLYVYVQNRSAAHQLEQLVALHEGIV DRFLSKDVHFLIINSEHTAPKKPMAPPPVHCSRGKAFLMHAMKAADAVMDPVQFAERW KITLVTVEEFLNFHYRHYPSGPLPKVISENLASSGAPTTKGYYMTPPCVKFEDVECRY KPQYMQFGRYPTIFDAHPITEFKDEPFVVNKSPKKKTKLPVKDVDHKKGYCEWCCVSY NSLENHVKKSKHLKMISNPKEFEALDEVIGQLPTMQDLVSRLQEKPSMAGNDSESGFA EGDKSEDFKCNVTEMKESKVGNAPTAADPTVKFDYSAITSASPMPAFDVDKIVFGENS VNTPPPAQQNQVKELLAHESNTKSNERTVPPATQPPQPDQSTSVNSSWAPYFNPMYGG YANQYYGSGYLSSYPSSYATTPASFYHPLQYPQMPYAMLPFGIHPNPMGQPSSQAYCS PHLPGPLNAHGSCPSLAAIGKPNVPTPTTSDCVPLPPTHASCPSLVSLPPAPDLSMPP NANQPSWPSQPVTPAFDIGSAPSNLSEPKLPSEHSKIPHALDTPPHKAEDDVPYNLNN SLQRLTMNCSATEVSESKSKATKEEGYSFDPLQFKVQDLFNIPDLTADAQPPKEDIKV EVTEVKSEDADTTLVEEPSKDETDLTPVQCKHQQPSKRKKVWIMLHIEELKFIIRRVT LSPKKMKKIAL" gene complement(52026..>62780) /locus_tag="CAPTEDRAFT_227292" mRNA complement(join(52026..52473,52523..52628,52683..52809, 52859..53054,53110..53153,53220..53488,53541..53675, 53731..53797,53849..53940,53997..54063,54125..54214, 54266..54325,54375..54540,54597..54718,54767..54920, 54976..55055,55105..55275,55329..55446,55506..55692, 55754..55958,56023..56238,56290..56465,56519..56636, 56692..56826,56891..56982,57037..57229,57280..57360, 57408..57767,57817..57933,57995..58073,58121..58206, 58256..58393,58429..58507,58661..58758,58807..59011, 59064..59219,59270..59388,59438..59554,59603..59733, 61806..61866,62733..>62780)) /locus_tag="CAPTEDRAFT_227292" /product="hypothetical protein" CDS complement(join(52161..52473,52523..52628,52683..52809, 52859..53054,53110..53153,53220..53488,53541..53675, 53731..53797,53849..53940,53997..54063,54125..54214, 54266..54325,54375..54540,54597..54718,54767..54920, 54976..55055,55105..55275,55329..55446,55506..55692, 55754..55958,56023..56238,56290..56465,56519..56636, 56692..56826,56891..56982,57037..57229,57280..57360, 57408..57767,57817..57933,57995..58073,58121..58206, 58256..58393,58429..58507,58661..58758,58807..59011, 59064..59219,59270..59388,59438..59554,59603..59733, 61806..61866,62733..62780)) /locus_tag="CAPTEDRAFT_227292" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05296.1" /db_xref="JGIDB:Capca1_227292" /translation="MDHGYSPSPCTDKSGEFYTKPFTIFRLFIMEKQDELLLLERVFL RIGSAETDEQLEQVLGKFLAPVLLKLSSEVEGVRKKVMEFLVHVNKRFKSRPTVQLPV EALLEQYRDPSISPFVTNFSILYIKMGFPRLSSEKQTELIPLLMQSVSGRPEPQQNSL LQLIIPALQHLKFPKSLQKKYELIGLNPVEDKTTTAIFLDFMLDMLLLPYNFASFTAR PKTAQTVPPPFAANTPNRAASATPPAPSPPPPAATSGLSEAAFKRAIGVGEIPLKPED LEKVKLGILEVLGAEIFAEQDILCHLVVGTSDTRYLNQDWNNPVVVAKLFSIFQGTVI LKGQRPYSKQNSKIKEDQKRVPAGGLLRAKIFPFLLKSKTAANQFPACVQVVFDCLYR EQTNAKLKSMAIQFVHHIIFHCEDTKFRPLGAVLLSGMVKFIKEAKEESKLRSMAYVA IGKIASRLPDLVKKDIGLLQTFFDAVSMEDGENRLAVQEALSMMRNAFQGLDPAQMKL MEALVLENIEKEQAQARRIAVQYAIAVFPADHLASRYALLLACSDNKEETANEAKKAL KPYASMEDGKEKEADKRLMPSFGDMVAYIQQRSDERVKTQQKYVTGSHILAFNPKTFA QVLLYLRNCLAYEAGIESPNASSISDLYEEAPKIALHLRSNYKSTSKGPLASYIRMIR QVLTALGSEESMMCLLEIVSVARDSLAKHFQPHLPWIKNFMFHSRDEIRSSAAQLYAT VTYFEATDESRTTALLGLLENLKNGVLESQHGSLVCCGYLIGLMLTGDLNDANKENII QALKDSVEFLDSSQALLSVGASSAIAEMARRGPLPLPDDTESGLSKRSLVEKLIKKLQ SSKESNKVREKAAVCLGNLCVGDKKFPFTDKVISGLMDAAAAKQMELHVTIGECLVSA ALGPKSSLNRDFWTTSEADFKAPDDCEDRVAHLLELLLTKYTRSANHHIRQAACIWLV ALVQNCGSHPSVNSQLMQAQSSFMAMLSENDEITQDVASKGLGIVYESCSAEQKKELV SVLVDTLTTGKRHKQQEVTGETQLFQEGALGKTPDGQGMSTYKELCSIASDLNQPDLI YKFMHLANHNATWNSKKGAAFGFSTIAAQAGEQLAPYLHQILPKLYRYQFDPNPRIQT AMSSIWDALVKDNKKTVDKYLKPIAEDLIRNLTNNQWRVRESSCMAVCELLRGRTVDD LVPYLPELWETMFRVRDDIKESVRNAADLAIKALSKTSIKLCDASQGSVGEAATSQVL PCLLKAGLGSQVQECRAIALATIVKISKTAGKLLKPHIPLLVTALLEALSTLEPQYLN YLSLHATMSSEETQDKLDTARLSASKTSPMMETVSLCVQFVDDSVLPKLIPSLTDLVR SGVGLGTKAGCASFIISIVGQCPKDITPYAGKILGALLNGLNDRNPTVRKSYASAIGY VVKVAKDSSVEKLLNKLKGWYLEKEDNSSVRAACGITVHAINQRSPDVLRRHGALVLP LAYLAMHETKAPESTEKDSSVWEEVWLDATPGTEAGLRLYMTEVVALAQTALDSQSWP MKAQGAATLSAVASKMQSQLGPPSLGVVLKALVTGLNGRIWDGKEELLKAVATVCTSC KNELLVARDGQPNVEQEVVGVVLKESQKERIAYRMEALTCLSAVLECYEVDRFSDVAA ILYPTIEEMKEKNSKQQASDHDVTHDLWLKYLQCVFDSLGQVWPHSADSQAEHGQKYC EYLCQSLTMSTWKVDTAALRSLKAFMKKSVILKEDKLKEMDTATVQPLLSPMVQPICK CLGNLKYSAVRSEALELTNLMVSRLTSANVLDILGHNQISALKVALETVSKENQMDLS DTASDILKSINTFCN" gene <64813..>68457 /locus_tag="CAPTEDRAFT_136028" mRNA join(<64813..64992,65050..65241,65334..65487,65535..65649, 65707..65803,65871..65967,66020..66138,66194..66343, 66396..66497,66551..66673,67871..68077,68269..>68457) /locus_tag="CAPTEDRAFT_136028" /product="hypothetical protein" CDS join(64813..64992,65050..65241,65334..65487,65535..65649, 65707..65803,65871..65967,66020..66138,66194..66343, 66396..66497,66551..66673,67871..68077,68269..68457) /locus_tag="CAPTEDRAFT_136028" /note="GO_component: GO:16020 - membrane; GO_function: GO:5216 - ion channel activity; GO_process: GO:6811 - ion transport" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05297.1" /db_xref="InterPro:IPR005821" /db_xref="JGIDB:Capca1_136028" /translation="MPSGESNSIHSDRPHCQEGDLLRRKLKFFFMNPCEKWRAKRRFP WKMVLQLVKIFFVTAQLALFGFDRGGHVDFLEKSNIAFKHLFLEGWQPSFETMPYPPA TGAFAVYTIPEFFSSVNYALRQYNLTEKVAIGTYHFSNPNATKPPVVMCNTFYKIGKI SAHNQSFLFDDTKIEDCFQLLPVIEYDESTQSAVAIYDVEKFLLLRNKSINFDSIISV ELKFSVKTVHLRKLSKVHTPDCFRFNISIFYDNSLHNGQMTVALSCSQEMLKCNGKVT SDVDEGPLLTLVTIFDAIVILVSSVSLFLCCRSLHRGNQLRKETSVFFEERLNHPLQV HSHFEFVNFWYIMIVINDLMTIVGSGLKIRIENKESAAYEACGVLLGTANLLVWFGVL RYLGFFEKYNILILTMKKSAPNILRFLVCAGVFYFGFTVCGWVVLGPYHLKFRTLSVA SECLFALVNGDELYVTFATIPNTGSYVWWYSRVFLYVFISFFIYVVLSVFISVIMDTY ETIKSYYEHGFPKTELQQFYDQITDEAHELFTQHPKQSRGSCCLCGCIPACIASCRNC ASSRDSME" gene complement(<69351..>71625) /locus_tag="CAPTEDRAFT_212030" mRNA complement(join(<69351..69377,69456..69586,70380..>71625)) /locus_tag="CAPTEDRAFT_212030" /product="hypothetical protein" CDS complement(join(69351..69377,69456..69586,70380..71625)) /locus_tag="CAPTEDRAFT_212030" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05298.1" /db_xref="InterPro:IPR002110" /db_xref="JGIDB:Capca1_212030" /translation="MSIFRLRNTVFESLENEINPHIVHAVFLEAHKNVQYPPIDLFRS LFICAAIFRGRDDVAEIALKNAENKYDVNYKQGYSSPLPLVAATQMCKYDLIEKLLLK KARVSLPGAGTEDDPGAVASALDVALKLDDVTAFRLMKSRSETPQLLEMATRHGAYRC AEECLHDQPFAVNGCKLSSRYSETPTPLVYALQRRDKRMVSLLLNAGASVNFSNSDGF TAMHYAADVPHDNIDQMEDIIQLLIAHQSDMNAVTCSGETPLSLFIARMLKAPNCEST HEGSTAGHVQAFVSRGCLLNPIRGKCALEACYSQFTSCLFRRIGSDAVPFLRWFDDLL TFLFSQGASFSGWDSSAVTINTILQGLSDIGTRLLAKSDNARRFKQLVDKIFIRLLCS HDRLPFNDGVCGYLTQSSVLSRRFLGFPQQTSLISRFECVIVTVAMVTCPFMHRKRSQ FGFHYFMEKKTILILQK" gene 72298..76684 /locus_tag="CAPTEDRAFT_181169" mRNA join(72298..72347,74915..75008,75072..75194,75247..75468, 75522..75690,75739..75945,75995..76159,76213..76272, 76331..76684) /locus_tag="CAPTEDRAFT_181169" /product="hypothetical protein" CDS join(72317..72347,74915..75008,75072..75194,75247..75468, 75522..75690,75739..75945,75995..76159,76213..76272, 76331..76516) /locus_tag="CAPTEDRAFT_181169" /note="GO_function: GO:4325 - ferrochelatase activity; GO_process: GO:6783 - heme biosynthesis" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05299.1" /db_xref="InterPro:IPR001015" /db_xref="JGIDB:Capca1_181169" /translation="MAAVSWSRFTAGVRFIVPHKGALSARCFSTAPVLNASSSKDNVQ PKTGILMLNMGGPEKLEHVSEFLERLFLDRDLMQLPVQNKLAPLIAKRRTPGIIEQYR EIGGGSPILKWTETQGEGMVKLLDQISPETAPHKFYVGFRYVHPLTEEAIEEMEKDRV QRAVAFTQYPQYSCSTTGSSVNAIYRHYAKRGQPSNILWSLIDRWPTHPGLVQAFTEC IEDELEKFPKEDRDDVVILFSAHSLPMKVVNRGDPYPQEVGATVQRVMERLNFRNSYR LVWQSKVGPLPWLGPQTDESIKGLVKNGRKNILLVPIAFTSDHIETLYELDLEYAKHL GEEVGAKMIRRASALNDRPSFIQAQAELVAEHLQANVAHSPQLPLRCPMCVNETCGHA KSWFKEHQDNLSALREREEMRAAKQG" gene 77442..79599 /locus_tag="CAPTEDRAFT_181174" mRNA join(77442..77560,77831..77942,77994..78042,78476..78529, 78596..79599) /locus_tag="CAPTEDRAFT_181174" /product="hypothetical protein" CDS 78694..79128 /locus_tag="CAPTEDRAFT_181174" /note="GO_component: GO:5634; small nucleolar ribonucleoprotein complex - nucleus [PMID 5732]" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05300.1" /db_xref="InterPro:IPR001163" /db_xref="JGIDB:Capca1_181174" /translation="MSKVAGKEKAVSLNTLLCLLQGCVGRCTTIELRNDDSILGTIDH VDIQMNVFLSTITFTRAKTGQQSQLDKLYVQGKNIRYVHIPDDMDMMACIEGQVSLAK TIRDHKDKRKPKARSRAQCRKDVDAKVAAIRSKLEAKVNLME" gene complement(80127..86388) /locus_tag="CAPTEDRAFT_227295" mRNA complement(join(80127..81281,81332..81444,81501..81570, 81622..81772,81824..81949,82002..82105,82155..83156, 83214..83326,83383..83489,83549..83693,83749..83867, 86282..86388)) /locus_tag="CAPTEDRAFT_227295" /product="hypothetical protein" CDS complement(join(81226..81281,81332..81444,81501..81570, 81622..81772,81824..81949,82002..82105,82155..83156, 83214..83326,83383..83489,83549..83693,83749..83867, 86282..86380)) /locus_tag="CAPTEDRAFT_227295" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05301.1" /db_xref="JGIDB:Capca1_227295" /translation="MAEKSVSDSAGERKGRKAARLPPNPVQRLQYRELGGIHGHHRNS VRNQVFQKLPGRLGFSLRGLVDETVLQEGHVFLGFTKNGKCVLSYTLHLEADEHTAYP IYVYRLQWWRFVPYKRLLKIGEVRLFGEEEIQQDLFIAFCEWSTNDSAVVIHGYCAPC DNEEKHACYVTVTAVPPIEPCEDCSQLLILYAQNSYGSQSGSAQPRCLNHAFTVHTKY EVAPPYPSFVPKVFLKMDGVVVLNTGDSLVALSVDIEDNHGGFGFHLYSPRVTRSEST MSSISSTISDEQEERLFSDVELTEPLLLVHSPHFSRATPKDTTNVGGVNLDFRPASAV RERHASTGKENLNFSKLGGSPVAGETSTAVTARPHRSLDVYNFEGSTPKKEEDSDADS PKAASYRGTLSFASFQRGAQMSNGAEGEIVLPSESQETVSEERDLFEKPSGLPRSLLS TQRAFTANLSLVPPDGFSMKGVAFSPGYNKLDTASSTCSSCVSSPLILQSESQCFTYS VRRYVESFGQVRPDSPIDIEDDLNLAYHSLLPLEVHGANYSTMRLLTKQCLTPHMPCV VVKQLTLDIEHYLGETVRTSADWGHRYLSFTDYDIQIVEVSPDTSEVIAVVYVLIRAR PPKDPHKHTHSGRSLPKLYQSRFKLLWNLQTGSYNTLDVEDLFEVSPIKQAEIIRKRW HPGLHVCDALQRRFAVPQAFPHSVHVLTNEAVFKGQSLKMILDRHHYVAILL" gene complement(87747..>90550) /locus_tag="CAPTEDRAFT_181179" mRNA complement(join(87747..88839,88988..89155,89212..89307, 89582..89744,90206..>90550)) /locus_tag="CAPTEDRAFT_181179" /product="hypothetical protein" CDS complement(join(88577..88839,88988..89155,89212..89307, 89582..89744,90206..90550)) /locus_tag="CAPTEDRAFT_181179" /note="GO_function: GO:4437 - inositol or phosphatidylinositol phosphatase activity" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05302.1" /db_xref="InterPro:IPR000760" /db_xref="JGIDB:Capca1_181179" /translation="MPRSTVIKLNPIGLAVGCIFACVGLWALGVPQYFFGSHEEVNYD VSLRELLSAGIDVARRGGDVVKKIRLGREEDLNAETKGKTLEGAAELKTEGDMQSHIA MMYALKKGFNGISVVSEEHDNLNPDLSKVEAPNKMRSEITHLTEDLKVPLKDITVWID PLDATQEYTEDLRQYVTTMMCVAVKGVPIIGVIHMAFDEETYWGFVDHGVSSNLKSVA PNTSAKERIIVSRSHAGTVEEVVKKSMGEATEIIPAGGAGYKTVQVIKGDADAYVHVT RIKKWDICAGNAIINAAGGEMTTMHGGKIDYDKAGDPKNDEGLLATMSNHKKFLDVFE PEYDALQKKH" gene complement(<94759..>96470) /locus_tag="CAPTEDRAFT_212035" mRNA complement(join(<94759..94977,96107..96158,96316..>96470)) /locus_tag="CAPTEDRAFT_212035" /product="hypothetical protein" CDS complement(join(94759..94977,96107..96158,96316..96470)) /locus_tag="CAPTEDRAFT_212035" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05303.1" /db_xref="JGIDB:Capca1_212035" /translation="MAIVFTSENIIGSSPERPTAEDTLQDLGLECAHLWLKNLDVEER WLQETGELSGKERGRREKERERKQEDINEDLEYSISLIELLRRARAKGADVCTAEEYS NLDDRVETCQVASNNDVINVIIESVIKDVIKEVSPNKFE" gene <96795..99181 /locus_tag="CAPTEDRAFT_227297" mRNA join(<96795..96809,97899..97990,98110..98212,98272..98427, 98484..98559,98614..99181) /locus_tag="CAPTEDRAFT_227297" /product="hypothetical protein" CDS join(96795..96809,97899..97990,98110..98212,98272..98427, 98484..98559,98614..98627) /locus_tag="CAPTEDRAFT_227297" /note="GO_function: GO:4840 - ubiquitin conjugating enzyme activity; GO_process: GO:6464; ubiquitin cycle - protein modification [PMID 6512]" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05304.1" /db_xref="InterPro:IPR000608" /db_xref="JGIDB:Capca1_227297" /translation="MASMEKRLQKELQALQRDPPVGVKVDTDKLTSNLSEWTVNLTGA PGTLYEGENFVLHFKFGSRYPFDSPQVIFGGANIPVHPHVYSNGHICLSILTEDWSPA LSVQSVCLSIVSMLSSCKEKKRPPDNAIYVKTCSKNPKKTRWWYHDDQV" gene complement(<101670..>102128) /locus_tag="CAPTEDRAFT_212037" mRNA complement(join(<101670..102028,102083..>102128)) /locus_tag="CAPTEDRAFT_212037" /product="hypothetical protein" CDS complement(join(101670..102028,102083..102128)) /locus_tag="CAPTEDRAFT_212037" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05305.1" /db_xref="JGIDB:Capca1_212037" /translation="MKSFFALSLICLASAELKNCGSEFFDNDDFMCCNGVVSPRPDCS ERVNHECCGTVGFDNGANQCCFGRIQLRQGERENNKCCGEIAFDNAQQMCCHGLVNAR PAGDEIDHKCCSGFAFNQLESKCRDGQISPRG" gene 104199..105178 /locus_tag="CAPTEDRAFT_975" mRNA join(104199..104228,104293..104393,104732..104957, 105011..105178) /locus_tag="CAPTEDRAFT_975" /product="hypothetical protein" CDS join(104299..104393,104732..104957,105011..105142) /locus_tag="CAPTEDRAFT_975" /note="GO_process: GO:15671 - oxygen transport" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05306.1" /db_xref="InterPro:IPR000971" /db_xref="JGIDB:Capca1_975" /translation="MVLSGAQAAAIQGNWKNIEAQAQEYANALFLKYLTANPGDQARF PKFAEVPLGDLRSNADFNSQTIVIVKALSGIVANLGDIQKAAELLRQRVRTHYKRNIT MAQFERLLDLLPMFVQENALAGGDVADAWRIAIADLMPAMRDEYSRLQ" gene 111595..134134 /locus_tag="CAPTEDRAFT_162628" mRNA join(111595..111759,112348..112531,112599..112764, 112817..112910,112973..113071,113123..113304, 113361..113480,113534..113735,113797..113892, 113946..114209,114265..114560,114616..114767, 114823..115030,115083..115255,115305..115582, 116461..116664,116724..116804,116865..117269, 118385..118503,118556..118855,118906..119146, 119200..119326,119387..119630,119686..119935, 119987..120115,120165..120527,120582..120754, 120807..121173,121230..121424,121475..121814, 121870..122072,122125..122368,122421..122698, 122757..122876,123311..123451,123509..123619, 123687..124052,124104..124256,124312..124452, 124507..124600,125077..125225,125286..125440, 125837..125990,126048..126212,126267..126455, 126511..126873,126934..127036,127093..127280, 127330..127893,127945..128295,129726..129908, 129964..130207,130261..130566,130617..130756, 130811..130978,131031..131166,131607..132106, 132160..132310,132377..132488,132557..132713, 132849..132929,132983..133114,133171..133426, 133486..134134) /locus_tag="CAPTEDRAFT_162628" /product="hypothetical protein" CDS join(111670..111759,112348..112531,112599..112764, 112817..112910,112973..113071,113123..113304, 113361..113480,113534..113735,113797..113892, 113946..114209,114265..114560,114616..114767, 114823..115030,115083..115255,115305..115582, 116461..116664,116724..116804,116865..117269, 118385..118503,118556..118855,118906..119146, 119200..119326,119387..119630,119686..119935, 119987..120115,120165..120527,120582..120754, 120807..121173,121230..121424,121475..121814, 121870..122072,122125..122368,122421..122698, 122757..122876,123311..123451,123509..123619, 123687..124052,124104..124256,124312..124452, 124507..124600,125077..125225,125286..125440, 125837..125990,126048..126212,126267..126455, 126511..126873,126934..127036,127093..127280, 127330..127893,127945..128295,129726..129908, 129964..130207,130261..130566,130617..130756, 130811..130978,131031..131166,131607..132106, 132160..132310,132377..132488,132557..132713, 132849..132929,132983..133114,133171..133426, 133486..133769) /locus_tag="CAPTEDRAFT_162628" /note="GO_component: GO:30286 - dynein complex; GO_function: GO:3777 - microtubule motor activity; GO_process: GO:7018 - microtubule-based movement" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05307.1" /db_xref="InterPro:IPR004273" /db_xref="JGIDB:Capca1_162628" /translation="MWMDCGEGKLLQSFENMMKKVMVPALRSQESWGSFLDSNQSRVE DFMESLDSFIKSLIGARENMEGHVTLADSDVGVIVDGLNTASDYQSAANNSEIHEKLE ELLATWSKQIEQVLAESEQIRREADDIGPVAELSYWKTRMAKFNTLLEQIKSPRCKAV VGVLCAAKSKSIKRWREMDARITDAANEAKDNVKYLYTLEKFFGPLVKCNPASMLEHI PSLMNAIRMIYSISSYYNTSERMTSLFVKVTNQMITTSKAYIKSDVSKIWEHPRAVLL NRINEAINLNKEYQRQFHKTKERLRLNPNERQFEFSENYIFGKFDTFCKRLEKVSDMI NTMNGYANIGNVRIEGIDTIAVRYKTIVEATKKKNYDILDHRKGEFDTDYLEFRSQFD SLQMQIQSFVDSWFERSLSTEQAIELLNKVESIQGPNLELKDKYMKILSNYSRDLETV RKLYQKQKAEPVVPRNLPPVAGKISWARQLYRRIEAPMKVFKTNADILKSEEAKKIIR NYNKMAAVLMEYELLYHRSWFRAVESARSGLTASLLVRHPETKVLYVNFDPQILELIQ EAKYLLKLNLSIPESALYLCKKEDKVKEVRVALGEMLLDYERVKNDIPTCLVPLMKPF IDRVEEALSPGLVALSWSSLNADDYLENIYKVMGELERLNRRCNDILDCRIEAVLEEM SLTPLCDLPEDEAVTVDKFLHLTEECCKEASQNLTKQSLLVESSINEMVSMLKEPLSE EELMKMMPEDSNNEPDAYITLLNTFTQRNTESLVKCTRLSLDAIKRRVQMTNRYSRSS EAQDESKAPLFRTDIVLAIPNIIMRPSLEDIQSVLNKSVQVILKMTSHVPQWEHLCQQ QRQQQKVMKKVNELESQAIDVGDDVKINPAFVIKSLHKIVAEHKDIVKIIIQLNSIVA TIKPDVQELLDQFLTYSELWETEPAVKVKEFMETKPIMSEFEANLRYFNNLEETIGEM QATFRVGPIQFFSESLRLALITETRNWKQAYGRHLNEKCGREMDEILDFFDTMQKRLG RPIKDLDDIRGHMAALMEIRENEIRIDMTMTPIEEAYVMLAKYGQHHNDGNAERVDSL PYGWKLLKQQVLQVQANLLEIQPEFKMDLLNGVEKFKTDTQEFYDDYGEKGPMVEGIQ PREASDRLNIYQARFDELWRKYQTYSGGEELFGLEVTDYPDLQRIRKELNLLQKLYSL YNDVLEKVNGYFDIAWVEIDIEKINVELLDFQNKCRKLPKALKEWQAYLELSKTITDF NETCPLLEMMANKAMMTRHWERISTLTGHTFDVDSDNFLLRNLMEAPLLENKEDIEDI CISAVKEKDIEAKLKQVVNDWSVQVFQFGPFKTRGELLLKGDTTTETVTLMEDSLMVL GSLMSNRYNAPFKPKIQEWVQKLTGTTEIIENWLIVQNLWIYLEAVFVGGDIAKQLPQ EAKRFSNIDKSWQKIMQRAHENPNVVLCCMGDDTLSQLLPHLLEQLEICQKSLTGYLE KKRLLFPRFFFVSDPALLEILGQASDSHTIQAHLLSVFDNTKTVTFDEKVYDRILSIN SQEGETVQLDEFVLAQGNVENWLGDLLRLTRKSVHGVIRTAAITIQDPAFKLLEFENM FPAQVGLLGLQMIWTRDSEIALTSARVDKKIMSQMNQKFLEILNTLIDVTTQELTKIE RTKYETLITIHVHQKDIFDDLVKMHIKTPTDFEWLKQSRFYFKEDEDKCIVSITDVDF IYQNEFLGCTERLVITPLTDRCYITLSQALGMSLGGAPAGPAGTGKTETTKDMGRCLG KFVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQIAIVLVAK KERKSVFVFTDGDNVEMDPEFGLFLTMNPGYAGRQELPENLKINFRTVAMMVPDRAII IRVKLSGCGFIQNLILSKKFYTLYKLCEEQLSKQVHYDFGLRNILSVLRTLGASKRAS PQDSEPTIVMRVLRDMNLSKLVDEDEPLFLSLIEDLFPGMVLDKGTYPEMEGAIEHQV EEFGLIYHAPWILKLIQLFETQRVRHGMMTLGPSGAGKTKCIHVLMKSMAECGEPHKE MRMNPKAISAPQMFGRLDVATNDWTDGIFSTLWRRTHKKKKGEHIWLVLDGPVDAIWI ENLNSVLDDNKTLTLANGDRIPMATNCKIIFEVHNIDNASPATVSRNGMVFMSSSVID WDPIIKGWVKKRPPNQADTIYSTFESIWPDLFRFVMQSLLPKMVMLECMYVRQALDIL EGLFPGEDENKELAPEHMQMLIVFAMMWSLGALLELDDRKKLETFMREHESDLPLPTC EGDDTIFEYVSTDNGQWEHWRERVPEYLYPTDSVPDYLGILVPNVDNIRTDFLIEIIA KQDKAVLLIGEQGSAKTVIIQGYCFKYDPEMHIFKSFNFSSASTPLMFQRTVESYVDK RMGTTYGPPAGKKMTVFVDDINMPIINEWGDQVTNEITRQMMEMRGFYNLEKPGEFTN IVDIQMMGAMIHPGGGRNDIPERLKRQFNIFNCTLPSNASIDKVFRTIGVGYFIQERG FPEEVVQNVGCLVPATRKLWQRVKIKMLPTPAKFHYVFNLRDLSRIWQGMLVGTSEIV TTTKILMSLWKHECSRVFADRFTTQEDKDWFEKTLKQVAEEECGAALTNEMMEEPYFV DFLRDAPEPTGEEGDDAEFEDPKVYEPIESYQQLLDRLHSYQAQYNENVRGSQMDMVF FKDAMTNLVKISRVIRTPKGHCLLVGVGGSGKQSLTRLASFIAGYKIFQITLSRSYNV GNLMDDLKFLYRTAGAEGKGITFIFTDNEIKDEAFLEYMNNVLSSGEVSNLFARDEMD EILQELVAVMKKEHPRRPPTNENLYQYYMSRVKANLHVTLCFSPVGEKFRSRSLKFPG LISGCTMDWFQRWPKDALVAVSRHFLASYDLVCSPAVKEAVQNSMGEFQDLVAEMCAE YFQRFRRQTHVTPKSYLSFISGYKAIYDQKKGEIGILAERMNTGLEKLIEATGAVNEL SKELAVKEKELAVASKKADQVLAEVTVSAQAAEKVKAQVQKVKDKAQGIVDEIVEDKG KAELKLEAARPALEEAEAALGTIKSSHISTVRKLAKPPHLIMRIMDCVLLLFQRRLEL VTADPERVCPKPSWSDAMKLMSGSSFLQGLLTFPKDTINGETVELLQAYLQMDDYNLE TAKKVCGDVAGLCAWTRAMAFFYSINKEVLPLKANLAVQEARYQGAQADLNKAQGQLD EKQKELDFVQAQYDAAMSEKQTLLDDAESCRRKMINATALIDGLSGERVRWTEASKNF EAQINRLVGDSLLAAGFLSYTGPFNQEFRSLMMKNWKKEMLQARIPFSDDINVVTMLV DNATISEWNLQGLPNDELSIQNGLIVTKATRYPLLIDPQGQGKTWIKSREGDKELQIS NLNHKYFRTHLEDALSLGRPLLLEDVGEELDPALDNVLEKNFIKSGSTFKVKVGDKEC DVLNGFRLYITTKLGNPAYTPEISARTSIIDFTVTMKGLEDQLLGLVILTEKKELEAE RTKLMEEVTANKRKMQDLEDNLLYRLTSTQGSLVEDESLIEVLRVTKSTAQDVKEKLT IAAETEVRINTAREEFRPVATRGSVIYFVIVEMSEVNNMYQTSLRQFLGLFNVSMLRS VKSPVTGKRIANIIDYLTFCTFKYTIRGLYEVDKFLFTILMTLKIQMNSNSIRNDEFQ CFIKGGAALDLNAVEPKPKKWISDMTWLNLVELSKQQQFSQILGQVARNDRAWKDWFD SDTPEEMPIPDGYGTSLDTFHKLLLVRSWCPDRAIPMAKIYVGEVMGKRFAEGVILDM EEMWDESEARCPMICFLSMGSDPTDNIERLAKSKGIRCSSISMGQGQEVHARRLMANS MAEGHWVLLQNCHLGLAYMDELLEVVTNTETVHSAYRCWITTEPHPKFPINLLQSSIK FTAEPPQGVKAGLKRTYGLISQDQLDVSNMPQWKPILYGVAFLHTTVQERRKFGPIGW NIPYEFNQSDFTSTIQFVQNHLDDMDPKKGVSWNTVRYMVGEVQYGGRVTDDYDKHLL LTYAKVWFGEGMFSDNFQFYTGYKIPRCKTVDEYKNFIDELPMVDSPETFGLHPNADI TNQTNTANTMLTTIVSIQPKDSGGSGGETRESVVYRLADDMLDKLPPDYVAHEVKDRL KKMGHLSPLNIFLRQELDRMQKVISEVGSTLRDLKLAIDGTIIMSENLRDALDNMYDA RIPNTWKRISWQSATLGFWFTDLLDRNNQFRAWLFEGRPNCFWMTGFFNPQGFLTAMR QEITRAHKGWALDAVVLDNEVTRLVQEDITSGPSEGTYIHGLYLDGAGWDRRNIRLLE PSPKVLYSPLPVVHVFAINADRRKGANLYECPVYKKPNRTDLTYIFPLLLKTAKDPDH WTLRGVALLCDTK" gene <141636..>142758 /locus_tag="CAPTEDRAFT_136006" mRNA join(<141636..141756,141816..141937,141991..142132, 142184..142548,142606..>142758) /locus_tag="CAPTEDRAFT_136006" /product="hypothetical protein" CDS join(141636..141756,141816..141937,141991..142132, 142184..142548,142606..142758) /locus_tag="CAPTEDRAFT_136006" /note="GO_process: GO:7050 - cell cycle arrest" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05308.1" /db_xref="InterPro:IPR001715" /db_xref="InterPro:IPR003108" /db_xref="JGIDB:Capca1_136006" /translation="MRQPSLTGEPDEDNDFLAALKEEALLLVKEDLCEWLTTVLGVEV NTENFITVLDTGVHVCRLAKLIQDQAQTAFNNGACKKAPPSSKISHRANAKTGTWFAR DNTANFIQWCKDYGVKSECLFESEGLVMHRDERGVVLCLLELARIGASYGFPAPSLIK MEKEIEKEEKMSAMAAAPALGKKNRNEPQSRKNSAPVDDLESEVRDEMTMYALPTKNL LQIRRIQDAWHCDLTRISQGKYIIGGKQIFIRLRGRKAMVRVGGGWDTLDHYLATHFP QKIKEFSNGDAYFLHIKSRYKSVA" assembly_gap 144481..144530 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 145397..226804 /estimated_length=81408 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <229014..>229244 /locus_tag="CAPTEDRAFT_70746" mRNA join(<229014..229136,229191..>229244) /locus_tag="CAPTEDRAFT_70746" /product="hypothetical protein" CDS join(<229014..229136,229191..>229244) /locus_tag="CAPTEDRAFT_70746" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05309.1" /db_xref="JGIDB:Capca1_70746" /translation="GVNRHFQMICIHDRMNTATQKKISSKQIWAHLANMYDLSALHES EIVPFPNKELEFQLP" gene <230501..232728 /locus_tag="CAPTEDRAFT_181186" mRNA join(<230501..230587,230643..230742,230804..230919, 230979..231065,231150..231176,231238..231278, 231337..231368,231435..231556,231619..231653, 231716..231803,231894..232028,232081..232252, 232299..232398,232450..232531,232581..232728) /locus_tag="CAPTEDRAFT_181186" /product="hypothetical protein" CDS join(230501..230587,230643..230742,230804..230919, 230979..231065,231150..231176,231238..231278, 231337..231368,231435..231556,231619..231653, 231716..231803,231894..232028,232081..232252, 232299..232398,232450..232531,232581..232691) /locus_tag="CAPTEDRAFT_181186" /note="GO_function: GO:3824 - catalytic activity; GO_process: GO:8152 - metabolism" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05310.1" /db_xref="InterPro:IPR001354" /db_xref="JGIDB:Capca1_181186" /translation="MTTPSIITALTVRDIRFPTSLEAHGSDAINDPDYSCAYVILETD TGLRGCGLTFTIGRGNEIVCKAIDAYKRMVVGTHLSTIYGGFGTFWHKLTQDPQMRWL GPEKGVTHLAVAAIINALWDLWGKIENKPVWKLLASMGPEEIVPLIDFQYISDVLTPE EAVEILKKSRAGILEREKSFLNSGYPAYTTSAGWLGYSEDKIKRLCRQAKDEGFTRFK VKVGLSKEDDERRLALVRHEIGDQCTLMVDANQRWDVQEAIKWMKPLTKYNLLWIEEP TSPDDVLGHATIAKALAPYGVGVATGESCQNRVLFKQLLQAQGLNFCQIDSCRLGGVN EILAVYLMAHKFDVPVCPHAGGVGLCEMVIHLQAFDYLGISTTQHNRVIEYVDHLHEH FVNPVQVAGGRYMAPTAAGYSTEMKESSLRKYEYPSGSEWQRLFSEGKFTLN" gene complement(232730..>240944) /locus_tag="CAPTEDRAFT_162634" mRNA complement(join(232730..233902,233959..234246, 234301..234396,234839..234965,237066..237247, 237319..237447,237502..237563,240899..>240944)) /locus_tag="CAPTEDRAFT_162634" /product="hypothetical protein" CDS complement(join(233777..233902,233959..234246, 234301..234396,234839..234965,237066..237247, 237319..237447,237502..237563,240899..240944)) /locus_tag="CAPTEDRAFT_162634" /note="GO_function: GO:4672; ATP binding - protein kinase activity [Evidence 4674] [PMID 5524]; GO_process: GO:6468 - protein amino acid phosphorylation" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05311.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000961" /db_xref="JGIDB:Capca1_162634" /translation="MGNAATAKKGDPAENVKAFLAAAKDDFNKKWDEPAQNTASLDEF DRIKTLGTGSFGRVMLVQHKATKQHYAMKILDKQKVVKLKQVEHTLNEKKILQAISFP FLVSLEYSFKDNSNLYMVLEFVTGGEMFSHLRRIGRFSEPHSRFYAAQIVLVLEYLHH LDIMYRDLKPENLLIDEVGYLKVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNK AVDWWALGVLVYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQV DLTKRYGNLKNAVNDIKTHKWFQTTDWIAIYQKKVEAPFIPKCKGPGDPSNFDDYEEE PLRISSTEKCAKEFADF" gene complement(254598..>259419) /locus_tag="CAPTEDRAFT_227301" mRNA complement(join(254598..255171,255242..255359, 255556..255626,255678..255783,259370..>259419)) /locus_tag="CAPTEDRAFT_227301" /product="hypothetical protein" CDS complement(join(255118..255171,255242..255359, 255556..255626,255678..255783,259370..259419)) /locus_tag="CAPTEDRAFT_227301" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05312.1" /db_xref="JGIDB:Capca1_227301" /translation="MAIHGSNSYEFSFEQGSHQDAGFAEGLQIGGKAGEDEGHRLGQV QGSKVGSEVGFYKGFASAWHNILLKDSSEKHRKKLKVLSQLLGLIDGFPLQEPQDPSL QEKMEAMRAKYKQVSSLLGVVPEKSQELCF" gene <259920..>261001 /locus_tag="CAPTEDRAFT_212049" mRNA join(<259920..260044,260099..260283,260339..260457, 260511..260555,260616..260726,260906..>261001) /locus_tag="CAPTEDRAFT_212049" /product="hypothetical protein" CDS join(259920..260044,260099..260283,260339..260457, 260511..260555,260616..260726,260906..261001) /locus_tag="CAPTEDRAFT_212049" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05313.1" /db_xref="JGIDB:Capca1_212049" /translation="MPLDGRAAFQLGVLLLALPLQLLISSYYNAGDETQRTFILNRLI TKAAVIKEQLFTWDTWQNWCQDLYNKVKMLKSLNQESDAGTDDPALEESYKAHSREYF GASKEPRYPRPPHVKYRVGQVIKHKKWGYRGIIVGWDPYTKAPESWIKEMHPADKPHW RKKPSYSVLVDTRDRPEPQATYVAEENIEVVTNTKVIHPAIDDYFYKYDGAQYLPRPK YKSLYPQG" assembly_gap 262706..262755 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 265124..268666 /locus_tag="CAPTEDRAFT_181192" mRNA join(265124..265244,266249..266305,266358..266601, 266660..266856,266911..267002,267050..267184, 267245..267474,268037..268230,268286..268666) /locus_tag="CAPTEDRAFT_181192" /product="hypothetical protein" CDS join(266250..266305,266358..266601,266660..266856, 266911..267002,267050..267184,267245..267474, 268037..268230,268286..268484) /locus_tag="CAPTEDRAFT_181192" /note="GO_component: GO:5677 - chromatin silencing complex; GO_function: GO:3677 - DNA binding; GO_process: GO:6342; regulation of transcription, DNA-dependent - chromatin silencing [PMID 6355]" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05314.1" /db_xref="InterPro:IPR003000" /db_xref="JGIDB:Capca1_181192" /translation="MNSNSTISLRLRLTNPKPSSHQKSEASAPSSAPEMTCCLHSCLH DNHSIMPSDERIEVTTTLPPKSSAMKFKIAWGPKGGAKFHRTCWDAVVKSSRARAKKS IVVEMSAKEKEMVKVAAKTAETHDSLARIQAEAKRIAAMITKAKHLVAFTGAGISTSA GIGDFRGKSGKWTEEDRHGYDHEPEAKRSRVDSDSNGVEGEEVPYEDLRPTFTHDAIF KLSEMNHLKHIISQNADGLHLLSGISHTGLSELHGNVFIERCEKCGHRYERSFYVMDD VACEYFEEKAELGHTDIIRPKHAKECTTCGLNHRTGRMCEEKNCDGHLMDSIINFGDL LEAAILKKAEDEAKKSDVMLILGSTVTVTPASALVTMGTKPLKLIICNRQKTQFDDIC DEKDKTNGEKHGARVFGDCDVLMREVMKCILSQDAFEEWNEQRKERLRIYNENRPK" gene complement(<271512..>272117) /locus_tag="CAPTEDRAFT_65438" mRNA complement(<271512..>272117) /locus_tag="CAPTEDRAFT_65438" /product="hypothetical protein" CDS complement(<271512..>272117) /locus_tag="CAPTEDRAFT_65438" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05315.1" /db_xref="JGIDB:Capca1_65438" /translation="LTDQEIAQVEMFYRSHKTDVFVSQCIVYLYVGSSASGLPQPSSM AGAGALPDTAGGENWTYMKSGVLVVVMDTGESRRNRKLSIVLAERGTGFVLWKDNLDH LTEYQAPQPCFQTMHLSNDHSKLAGLRFADAAAAVIFHQKISSLTSDPQDSAMRLSGN SKKSKEKKAKGKGSKQKQKLPTKADISSPCCFTHVTKLDRTD" gene complement(<273098..>275919) /locus_tag="CAPTEDRAFT_212052" mRNA complement(join(<273098..273225,273909..274077, 275752..>275919)) /locus_tag="CAPTEDRAFT_212052" /product="hypothetical protein" CDS complement(join(273098..273225,273909..274077, 275752..275919)) /locus_tag="CAPTEDRAFT_212052" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05316.1" /db_xref="JGIDB:Capca1_212052" /translation="MALGSGANCSYYSAACSRVSLAPLQCAERSITATELSSGCRKWK QNSFPNNMASCQPAAFGKAPRNPAAEAPVYIGLGSIRASVDRPETVVCCPPFPAIGLR DPEYSQDYRLMWKYLNLIPLPRRCACYEFAAVKNCFKNSAGFEAGIARLLTR" gene 278809..>283464 /locus_tag="CAPTEDRAFT_227304" mRNA join(278809..278935,282606..282730,282786..>283464) /locus_tag="CAPTEDRAFT_227304" /product="hypothetical protein" CDS join(278870..278935,282606..282730,282786..283464) /locus_tag="CAPTEDRAFT_227304" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05317.1" /db_xref="JGIDB:Capca1_227304" /translation="MPSEISHVYILEKQNSSVNYLKANKKTLTLVAAKDRGQLTQTAA MSLVNIGLLKEIMYEGKQHRHFAALLILTSASLALQLVAGMMSLFISNVRHYYSKYND DPAGACCIHLCGCQCSWKAPEDQCCSSLCPIEITTNTYEEHEMRILQQNAEMHKNAFD AQLDELKTKHEVEHLMVVLDRARSEEQRLRAMGGDPKNDIEEVNRQLKGITEELAAAQ ERKKALEKALSEAEISRRQSNALVVHAENIERNFVLKKITFWQNGVNYLFYVVLVINA FITGLGLTDSSRA" assembly_gap 288459..288508 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <288637..290374 /locus_tag="CAPTEDRAFT_181194" mRNA join(<288637..288780,288840..288936,289730..289928, 290103..290374) /locus_tag="CAPTEDRAFT_181194" /product="hypothetical protein" CDS join(288637..288780,288840..288936,289730..289928, 290103..290220) /locus_tag="CAPTEDRAFT_181194" /note="GO_function: GO:16491 - oxidoreductase activity; GO_process: GO:8152 - metabolism" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05318.1" /db_xref="InterPro:IPR002198" /db_xref="JGIDB:Capca1_181194" /translation="MFPSHDPTLFLSGAFQSVIKIYGHYDLLVNNAGIGSTPDYEHLL RINLSAVIEGTLSAMSHMRKDKGGRGGLIVNIASTTGLAPAPFAPVYAASKHGVVGFS RSFGPAVEPLGVKVLCLCPSFANTEIHLGRLKYVEKWETIDRIMEVSEVASAFAKLVD EEVNGSVLGVYHDGAEYQFRRKARL" gene complement(<299318..>299530) /locus_tag="CAPTEDRAFT_135987" mRNA complement(<299318..>299530) /locus_tag="CAPTEDRAFT_135987" /product="hypothetical protein" CDS complement(299318..299530) /locus_tag="CAPTEDRAFT_135987" /note="GO_component: GO:5834 - heterotrimeric G-protein complex; GO_function: GO:4871 - signal transducer activity; GO_process: GO:7186 - G-protein coupled receptor protein signaling pathway" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05319.1" /db_xref="InterPro:IPR001770" /db_xref="JGIDB:Capca1_135987" /translation="MNKFQEGLQAQRKLVEQLRAEAAMQRLPVSECISEMMKFCDSQQ DSDVLIKGFAKQNDNPFKEKGGCTIL" gene complement(305261..>306762) /locus_tag="CAPTEDRAFT_227306" mRNA complement(join(305261..305852,306222..306280, 306553..>306762)) /locus_tag="CAPTEDRAFT_227306" /product="hypothetical protein" CDS complement(join(305564..305852,306222..306280, 306553..306762)) /locus_tag="CAPTEDRAFT_227306" /note="GO_component: GO:5834 - heterotrimeric G-protein complex; GO_function: GO:4871 - signal transducer activity; GO_process: GO:7186 - G-protein coupled receptor protein signaling pathway" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05320.1" /db_xref="InterPro:IPR001770" /db_xref="JGIDB:Capca1_227306" /translation="MPYVLSENAYEAKRVKLVEEVEQRRVHLDMERCMLSKTLQEMFA YCAQHAPQDPLIFPAKENPYKEKSGCVPHPHPPQTSALLSSFSLIRSHVEHRPAEAPR GAAPRGAQRAADAVVPQPQGPDQLHGAEQGRRPADRRHRQEGEPVPGEELLLHPLSMP LPRISSSSFSPPLFPSSPLMALNQC" assembly_gap 317302..319956 /estimated_length=2655 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 321023..321444 /estimated_length=422 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 323894..325536 /estimated_length=1643 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 326813..331360 /estimated_length=4548 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <331399..>332163 /locus_tag="CAPTEDRAFT_212057" mRNA join(<331399..331429,331479..331603,331662..331703, 331753..331935,331987..>332163) /locus_tag="CAPTEDRAFT_212057" /product="hypothetical protein" CDS join(331399..331429,331479..331603,331662..331703, 331753..331935,331987..332163) /locus_tag="CAPTEDRAFT_212057" /note="GO_component: GO:5622; ribosome - intracellular [PMID 5840]; GO_function: GO:3735 - structural constituent of ribosome; GO_process: GO:6412 - protein biosynthesis" /codon_start=1 /product="hypothetical protein" /protein_id="ELU05321.1" /db_xref="InterPro:IPR000244" /db_xref="JGIDB:Capca1_212057" /translation="MQLILTVDIEGIGFKGETVTVSKRVGRNYLLISGAAVYVTPENL AKWAEIRKNLPKTVTQSIWARKTMRRLSEMNLPIPMHPRHPWTLSPAHVVVAFRKQGV ELNESCIILPEEPIKEHGPAEFQVLVNGKDTVEIHALIFPIDLENPDDLPEDFPPVWG DQTANMTDIVLEALARNQAANSPSS" CONTIG join(AMQN01007881.1:1..2087,gap(50),AMQN01007882.1:1..1213, gap(702),AMQN01007883.1:1..1203,gap(50),AMQN01007884.1:1..2199, gap(50),AMQN01007885.1:1..31148,gap(992),AMQN01007886.1:1..3663, gap(50),AMQN01007887.1:1..101073,gap(50),AMQN01007888.1:1..866, gap(81408),AMQN01007889.1:1..35901,gap(50),AMQN01007890.1:1..25703, gap(50),AMQN01007891.1:1..28793,gap(2655),AMQN01007892.1:1..1066, gap(422),AMQN01007893.1:1..2449,gap(1643),AMQN01007894.1:1..1276, gap(4548),AMQN01007895.1:1..956) //