LOCUS KB030789 10931388 bp DNA linear CON 19-MAR-2015 DEFINITION Pteropus alecto unplaced genomic scaffold scaffold195, whole genome shotgun sequence. ACCESSION KB030789 ALWS01000000 VERSION KB030789.1 DBLINK BioProject: PRJNA171993 BioSample: SAMN01103203 KEYWORDS WGS. SOURCE Pteropus alecto (black flying fox) ORGANISM Pteropus alecto Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus. REFERENCE 1 (bases 1 to 10931388) AUTHORS Zhang,G., Cowled,C., Shi,Z., Huang,Z., Bishop-Lilly,K.A., Fang,X., Wynne,J.W., Xiong,Z., Baker,M.L., Zhao,W., Tachedjian,M., Zhu,Y., Zhou,P., Jiang,X., Ng,J., Yang,L., Wu,L., Xiao,J., Feng,Y., Chen,Y., Sun,X., Zhang,Y., Marsh,G.A., Crameri,G., Broder,C.C., Frey,K.G., Wang,L.F. and Wang,J. TITLE Comparative analysis of bat genomes provides insight into the evolution of flight and immunity JOURNAL Science 339 (6118), 456-460 (2013) PUBMED 23258410 REFERENCE 2 (bases 1 to 10931388) AUTHORS Zhang,G., Cowled,C. and Wang,L. TITLE Direct Submission JOURNAL Submitted (06-AUG-2012) Department of Science and Technology, Beijing Genomics Institute, Shenzhen, 2nd Office Building, Beishan Industrial Zone, Beishan Road, Yantian District, Shenzhen, Guangdong 518083, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.06 Genome Coverage :: 110x Sequencing Technology :: Illumina HighSeq 2000 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10931388 /organism="Pteropus alecto" /mol_type="genomic DNA" /submitter_seqid="scaffold195" /db_xref="taxon:9402" /chromosome="Unknown" /sex="male" /tissue_type="kidney" /geo_loc_name="Australia: Anglican Church Grammer School, East Brisbane" /collection_date="Nov-2008" assembly_gap 1062..1543 /estimated_length=482 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 30883..30912 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 37372..37409 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 39666..39682 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<52833..>60857) /locus_tag="PAL_GLEAN10013141" mRNA complement(join(<52833..53084,54224..54406,55332..55422, 56447..57158,60788..>60857)) /locus_tag="PAL_GLEAN10013141" /product="F-box only protein 5" CDS complement(join(52833..53084,54224..54406,55332..55422, 56447..57158,60788..60857)) /locus_tag="PAL_GLEAN10013141" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="F-box only protein 5" /protein_id="ELK09906.1" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR002867" /db_xref="UniProtKB/Swiss-Prot:Q9UKT4" /translation="MLQGLCHEFSPVLFSHPHFIDERGRKEESSTLSIKMKCDFSYNH VHSGLKLVKPDDSERLGSYTSACLEGSYKDCIKDYESLSDIGSPIGSPRIVELETENK PLHNKENQHVQPTLNSSDETEELETNGPYEDSGYSSFSQQSSINEHEEASFPLEENSS DSPQSCLLQTQSPDQYPNKNLLPALHFAKVVCSTLKKNSKRNSKIDWEKLKKYNVNFG LQNIIGRKMGLECVDVLSELFGRGLRHLLANILTQLSDMDLINVSKVSTTWKKILEDD KRALQLYNEAIRRVTEKSIKFSPHGSTRENVMVRTALASVQKAAAQPPPRKDARTKLS NPDDQKDSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDGYLQRATCKREGCGFD YCTRCLCNYHTSKDCSNGKPLKASYKMGPLPGTKKSKKNLRRL" gene complement(<70734..>81258) /locus_tag="PAL_GLEAN10013142" mRNA complement(join(<70734..70934,71681..71817,73237..73354, 74798..74961,75450..75633,77391..77470,81006..>81258)) /locus_tag="PAL_GLEAN10013142" /product="Peptide chain release factor 1-like, mitochondrial" CDS complement(join(70734..70934,71681..71817,73237..73354, 74798..74961,75450..75633,77391..77470,81006..81258)) /locus_tag="PAL_GLEAN10013142" /note="GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_function: GO:0003747 - translation release factor activity [Evidence IEA]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IEA]" /codon_start=1 /product="Peptide chain release factor 1-like, mitochondrial" /protein_id="ELK09907.1" /db_xref="InterPro:IPR000352" /db_xref="InterPro:IPR005139" /db_xref="UniProtKB/Swiss-Prot:Q2KI15" /translation="MRSRLLLSAARCLWARGAVAPARRHMSCDRLQLEELFARGGPLR TFLERQAGSESQVRGPELVAIAKLLSEREQELRETEHLLHDENEDLRKLAEDEIASCQ KEIAQLKHQIILLLVPSEEADENDLILEVTAGVGGQEAMLFTAEIFDMYQQYAAFKRW HFETLEYFPNEIGGLRHASASIGGSEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMT VAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQER SQLKNREMAMKKLRARLYSMYLEEETSKRYSARKIQIGTKGRSEKIRTYNFPQNRVTD HRINKSLHDLETFMQGEYLLDELVQSLKDYADYESLVEIISRKL" gene complement(<89657..>114432) /locus_tag="PAL_GLEAN10013143" mRNA complement(join(<89657..89845,98024..98258,99745..99834, 114314..>114432)) /locus_tag="PAL_GLEAN10013143" /product="Regulator of G-protein signaling 17" CDS complement(join(89657..89845,98024..98258,99745..99834, 114314..114432)) /locus_tag="PAL_GLEAN10013143" /note="GO_function: GO:0004871 - signal transducer activity [Evidence IEA]" /codon_start=1 /product="Regulator of G-protein signaling 17" /protein_id="ELK09908.1" /db_xref="InterPro:IPR000342" /db_xref="InterPro:IPR016137" /db_xref="UniProtKB/Swiss-Prot:Q9UGC6" /translation="MRKRQQSQNEGTPAVSQAPGSQRPNNTCCFCWCCCCSCSCLTVR NEERGEMAERPTHTTKMESIQVLEESQNPTSDEVLSWSQNFDKMMKAPAGRNLFREFL RTEYSEENLLFWLACEDLKKEQNKKVIEEKARTIYDDYISILSPKEVSLDSRVREVIN RNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVESTASSTSES" assembly_gap 127578..127607 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 153053..153095 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 168724..168833 /estimated_length=110 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 169194..169391 /estimated_length=198 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 220966..220978 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 223456..223469 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 242905..242942 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 291167..291177 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 302199..302236 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 328121..328540 /estimated_length=420 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 329770..329803 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 358466..358509 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 413053..413100 /estimated_length=48 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 413785..414239 /estimated_length=455 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 477687..477703 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 551052..551068 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <669116..>703923 /locus_tag="PAL_GLEAN10013144" mRNA join(<669116..669408,702265..702617,703388..>703923) /locus_tag="PAL_GLEAN10013144" /product="Mu-type opioid receptor" CDS join(669116..669408,702265..702617,703388..703923) /locus_tag="PAL_GLEAN10013144" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0004985 - opioid receptor activity [Evidence IEA]; GO_function: GO:0004988 - mu-opioid receptor activity [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]" /codon_start=1 /product="Mu-type opioid receptor" /protein_id="ELK09909.1" /db_xref="InterPro:IPR000105" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR001418" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/Swiss-Prot:Q95M54" /translation="MDSGTVPRNGSNCTDPFTHSSSCSPAPSPGSWVNFSHLDGNLSD PCGPNRSEVGGSASLCPPTSSPSMITAITIMALYSIVCVVGLFGNFLVMYVIIRYTKM KTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGTILCKIVISIDYYNMFTSIFT LCTMSVDRYIAVCHPVKALDFRTPRNAKIINVCNWILSSAIGLPVMFMATTKYRHGSI DCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDR NLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCL NPVLYAFLDENFKRCFREFCIPTSSAIEQQNSTRIRQNTRDHPSTAHTVDRTNHQVGS F" assembly_gap 672232..672247 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 710656..710742 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 718682..718733 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 721623..721765 /estimated_length=143 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<754653..>816218) /locus_tag="PAL_GLEAN10013145" mRNA complement(join(<754653..754859,762517..762710, 776275..776641,786369..786457,787772..787830, 793480..793551,795038..795111,808318..808374, 814383..814468,816158..>816218)) /locus_tag="PAL_GLEAN10013145" /product="Interactor protein for cytohesin exchange factors 1" CDS complement(join(754653..754859,762517..762710, 776275..776641,786369..786457,787772..787830, 793480..793551,795038..795111,808318..808374, 814383..814468,816158..816218)) /locus_tag="PAL_GLEAN10013145" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Interactor protein for cytohesin exchange factors 1" /protein_id="ELK09910.1" /db_xref="InterPro:IPR001849" /db_xref="UniProtKB/Swiss-Prot:Q8WWN9" /translation="MEEVLGGSEGVIAILVQQSDAPQEFSEQRCWKDWVLVEYGTFVR SDKAQEAVICLSTAAVDEDAGVNDAEKADGFVNLPDFTVERASECKKKHAFKISHPQI KTFYFAAENMQEMNVWLNKLGLAVIHRESTTKDEECYSESEQEDPDVAVETAHPPHSA GTLSPLAQQASSSSLKSSETSSSFSSLESTIKTSSSLTSLSKERQSWINMVNSSSTAE DVGQSIAIAVQLHSPAPSEANSCKALENSFAMSESGFLNSLSSDDTSSLSSNLDHLSV PDKPTGSKMMDREETKVPEDDEMEKLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCK NPSINEKLHKIRTLNSTLKCKEHDLAMINQLLDDPKLTATKYREWKVMNTLLIQDIYH QQQDPTAAPEGPPQGRESPPSSTSVENSI" assembly_gap 764918..767015 /estimated_length=2098 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 797536..798642 /estimated_length=1107 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 813787..813893 /estimated_length=107 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 848935..849345 /estimated_length=411 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 855351..855393 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 908464..908505 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<927519..>974074) /locus_tag="PAL_GLEAN10013146" mRNA complement(join(<927519..927817,930263..930352, 930850..931058,933437..933561,938311..938457, 938719..938787,942735..942794,944745..944864, 947413..947454,952189..952276,952833..953035, 953185..953354,958515..958599,959450..959613, 973939..>974074)) /locus_tag="PAL_GLEAN10013146" /product="Connector enhancer of kinase suppressor of ras 3" CDS complement(join(927519..927817,930263..930352, 930850..931058,933437..933561,938311..938457, 938719..938787,942735..942794,944745..944864, 947413..947454,952189..952276,952833..953035, 953185..953354,958515..958599,959450..959613, 973939..974074)) /locus_tag="PAL_GLEAN10013146" /note="GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0009966 - regulation of signal transduction [Evidence IEA]" /codon_start=1 /product="Connector enhancer of kinase suppressor of ras 3" /protein_id="ELK09911.1" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR001660" /db_xref="InterPro:IPR010599" /db_xref="InterPro:IPR010993" /db_xref="InterPro:IPR017874" /db_xref="InterPro:IPR019555" /db_xref="InterPro:IPR021129" /db_xref="UniProtKB/Swiss-Prot:Q6P9H4" /translation="MEEKGLWYLERVRECGSVGQPYVPMAQPESFSLQKADFSPRGQL SGLDDCLQQYVHKFEREKINGEQLLQISHQDLEELGVTRIGHQELVLEAVDLLCALHL DGLGSIQAGLANAVNMSQVRRVITEKDGAGSLEEERGLRANQVVSGKKELFPPMFAGG AFWEEALAGTKSLRRQQASVAIAGENYGLETDNMKNLVLKLRASSHNLQNYISSRRKS PAYDGTTSHKPPNEFLTSVVELIGAAKALLSWLDRAPFTGITDFSVTKNKIIQLCLDL TTTVQKDCLVAEMEDKVLTVVKVLNGICDKTIRSTTDPVMSQCACLEEVHLPNIKPGE GLGMYIKSTYDGLHVITGTTENSPADRSQKIHAGDEVIQVNQQTVVGWQLKNLVRKLR ENPTGVVLLLKKRPTGSFNFTPAPLKNLRWKPPLVQTSPPPTTTQSPESTMDTSLKKE KPAILDLYIPPPPAVPYSPRDENGSFVYGGFSKCKQPLPGPKGSESPNSFLDQESRRR RFTIADSDQLPGYSVETNIPPTKMRQKTPSYGKPRPLSMPADGSWMGIVDPFARPRGH GKKGEDALCRYFSNERIPPIIEENSSPPYRFSRPTTERQLVRGADYIRGSRCYINSDL HSSATIPFQEEGTKKKPVSVGAKSSSTEPSLLVSWFTRLKLLTH" assembly_gap 957294..957318 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 963018..963097 /estimated_length=80 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 976022..976122 /estimated_length=101 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1002469..1003552 /estimated_length=1084 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1017556..1018185 /estimated_length=630 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1028700..1028756 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1050850..1050874 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1066168..1066202 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1073874..1073933 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1078935..1079508 /estimated_length=574 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1106373..1106407 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1106839..1106852 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1114705..>1213137 /locus_tag="PAL_GLEAN10013147" mRNA join(<1114705..1114792,1139502..1139689,1144813..1144875, 1168626..1168709,1172078..1172122,1178258..1178419, 1180983..1181136,1182003..1182133,1184892..1185068, 1185986..1186065,1187768..1187885,1193274..1193405, 1193680..1193792,1195348..1195541,1198929..1199029, 1201569..1201682,1202643..1202799,1204591..1204724, 1206322..1206463,1208143..1208208,1210731..1210934, 1211684..>1213137) /locus_tag="PAL_GLEAN10013147" /product="Putative RNA-binding protein 16" CDS join(1114705..1114792,1139502..1139689,1144813..1144875, 1168626..1168709,1172078..1172122,1178258..1178419, 1180983..1181136,1182003..1182133,1184892..1185068, 1185986..1186065,1187768..1187885,1193274..1193405, 1193680..1193792,1195348..1195541,1198929..1199029, 1201569..1201682,1202643..1202799,1204591..1204724, 1206322..1206463,1208143..1208208,1210731..1210934, 1211684..1213137) /locus_tag="PAL_GLEAN10013147" /note="GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]" /codon_start=1 /product="Putative RNA-binding protein 16" /protein_id="ELK09912.1" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR006569" /db_xref="InterPro:IPR006903" /db_xref="InterPro:IPR008942" /db_xref="UniProtKB/Swiss-Prot:Q9UPN6" /translation="MDSRRHTMANKTSELDGKTSNLQKLLKDKGPALPLPPRGRGGRA SRCSPFSRLRRRLRLTLPTQRSGRRLFRRRARGLSIDNMEAVKTFNSEDCASTPACTD CFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPE YKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLN LWQKNNVFKSEIIQPLLDMAAGIPPPAVTPVLASTTAAMSNTPGTPVTPVTPANVVQG LPDPWVSQIANTDTLTAVAQILQSPQGQQFQQLIQTLQIQQQKPQPSILQALDAGLVV QLQALTAQLTAAAAAASTLNPLEQGVPFNKKLMDRFDFGEDSEHSEEPKKEIPTSQLS HVSESVNSSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPS QGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSRSRTHSR SRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKG LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVH RQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD DLEGFAEGGMIDQETVNTEWETVKSSEPVKETAPTTQSPAPVDKETVVTTQAEAFPPP VAMLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPFLRASFNPSQPPPGFMPPP VPPPVVPPPAIPPVVPSLVQPPLSMTPETVKDVGFGGLVLPGGSVAGSLAAGNVFNPP TKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSSSAILGGQPPNVTSNSGILGVQRP NVSSSSEILGVRPSNVSGSSGIIGAQPPNILNNSAILGIQPPGVSSSSGLLGVLPPNV PSSPGLIGVQPPNVPNASGLLAAQPPAGPQNLPPLGLSGQRLPVVPVLDLRPGLIPQA PGPRFPLLQPGLPPQRGIPPPSVLDAALHPPPRGPFPPGDIFSQPERPFLVPGRQSID NITNPEKRIPLGNENIQQEGDRDYRFPPIETRESMSRPPPVDVRDMVGRPVDPREGPG RPPLDGRDHFGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGPRDFDEREHRVLPV FAGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDF DFCREINGNRLGRERIQNTWVPPPHARVFDFFEGATSQRKGDSVPQVNGENTERHAQP PPLPVQNDPELYEKLTSSSEINKEKSDTVADIESEPVVESTETEGT" assembly_gap 1139036..1139483 /estimated_length=448 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1195953..1195973 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1267488..1267503 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1310688..>1311912) /locus_tag="PAL_GLEAN10013149" mRNA complement(join(<1310688..1310821,1311717..>1311912)) /locus_tag="PAL_GLEAN10013149" /product="hypothetical protein" CDS complement(join(1310688..1310821,1311717..1311912)) /locus_tag="PAL_GLEAN10013149" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09913.1" /translation="MAWPEPEEEKLPERRKERGLSGPRRRREEGLGEDSVANSITEVE CNDPEKSLWEFRQEVTEDFLKRYLASLRPWTFVDLGQNIKVLGSESSLYRALRKQITA APAPPNH" assembly_gap 1311124..1311161 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1322222..1322828 /estimated_length=607 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1324015..>1324257 /locus_tag="PAL_GLEAN10013150" mRNA <1324015..>1324257 /locus_tag="PAL_GLEAN10013150" /product="hypothetical protein" CDS 1324015..1324257 /locus_tag="PAL_GLEAN10013150" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09914.1" /translation="MSVHSEMGKQILRSSLSGGQHRSACCAPGPEPVTVMPPHFLPCG LLSIGEGATVRQRIVTIVWKHRAGSTQQTLDDLQRS" assembly_gap 1351673..1351717 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1354469..1354480 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1359951..1359996 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1363771..1363820 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1393266..1393472 /estimated_length=207 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1399783..>1469140 /locus_tag="PAL_GLEAN10013151" mRNA join(<1399783..1399842,1402785..1402878,1411659..1411723, 1413687..1413800,1429466..1430064,1430372..1430687, 1435816..1436251,1441332..1441504,1443754..1443978, 1452769..1452954,1453454..1453600,1455721..1455792, 1462533..1462694,1464127..1464237,1464418..1464496, 1466621..1466713,1467290..1467553,1469010..>1469140) /locus_tag="PAL_GLEAN10013151" /product="T-lymphoma invasion and metastasis-inducing protein 2" CDS join(1399783..1399842,1402785..1402878,1411659..1411723, 1413687..1413800,1429466..1430064,1430372..1430687, 1435816..1436251,1441332..1441504,1443754..1443978, 1452769..1452954,1453454..1453600,1455721..1455792, 1462533..1462694,1464127..1464237,1464418..1464496, 1466621..1466713,1467290..1467553,1469010..1469140) /locus_tag="PAL_GLEAN10013151" /note="GO_function: GO:0005057 - receptor signaling protein activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]" /codon_start=1 /product="T-lymphoma invasion and metastasis-inducing protein 2" /protein_id="ELK09915.1" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR003116" /db_xref="UniProtKB/Swiss-Prot:Q8IVF5" /translation="MSLSGDPSSGLSSFPLLTWQDFVLELQRHLFGQLILDERVVTLS VIPTALRDILCITGSFTPFTEKSFWDGRMDLIPIEDCLRFVSPVPDKRQTMEGNRKTA DGLYLASAKVKMGNSESQYTFQGSKNHSNTIPGAKQKPCSLKIRSIHAKDDKSLHGWG HASSGAGYKSRSLARSCLSHFKSNQPYASRLGGPACKVSKGNAYSKHRTNGSGSDFQG NHAAFLPENGFHYVAQDRAENHVASKDCNGHLLNCYGRNESAASTPPGEDRRSPRVLI KTLGKLDGCLRVEFHSGGAHGHRPGPPAGTEGAPGSSLSSLRELDPDAPLAGLAASGV RLSDEDIGAPASLSHRVSFASDMDMPSRVGHREPGPYASFTLPCRRSKAFTEDASKKD TLKARMRRISDWTGSLSRKKRKLQEPRSKEGSDYFDSRSDGLNVDGQGPFQASAALWS GGSAQLLSQRSESAHAIGSDPLRQDIYENFMRELEIGRTNTEHAETSTETAESSSESL SSLEQLDLLFEKEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLL FYETYGKHSLDQSGAPRCALFAEDSIVQAVPEHPKKEHVFCLSNSFGDVYLFQATSQT DLENWVTAIHSACASLFAKKHGKEDTVRLLKNQTKNLVQKIDIDSKMKKMAELQLSVV RDPKNRKAIENQIQQWEQNLEKFHMDLFRMRCYLASLQGGELPNPKSLLAATSRPSKL ALGRLGVLSVSSFHALVCSRDDSAFRKRTLSLTQRGRNKKGIFSSLKGLDTLARKGKE KRSSITQIFDSSGSHGFSGTQLPQNPNNSSKVDDLLHMYGSAVDGVPRDSTWEVQTYV HFQDNQEVSVTIKPEHRVEDILTLACKMRQLEPSHYGLQLRKSVDENTEYCIPAPYEY MQEQASVYDEIEVFPLNVYDVQLTKTGGVSDFGFAVTAQVDGHQHLSRIFVSDVLPHG LAYGEGLRKGNEIMTLNGEAVSDLDLKQMEALFSEKSVGLTLIARPPDTKGTLCTSWS DSDLFSRDQKSLLPPPNQSQLLEEFLDNFKKNTANGGLAGAWHCLSTAALPAGPSATV VPTSAGPSLEAASRQPGGSH" assembly_gap 1412726..1412758 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1424811..1424845 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1430141..1430363 /estimated_length=223 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1445085..1445102 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1445486..1445500 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1473313..1473566 /estimated_length=254 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1489022..1489587 /estimated_length=566 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1513068..>1527996 /locus_tag="PAL_GLEAN10013153" mRNA join(<1513068..1513190,1515747..1515815,1516483..1516608, 1517401..1517509,1520356..1520535,1522179..1522301, 1523867..1523925,1524549..1524654,1525522..1525609, 1525967..1526121,1527389..>1527996) /locus_tag="PAL_GLEAN10013153" /product="T-lymphoma invasion and metastasis-inducing protein 2" CDS join(1513068..1513190,1515747..1515815,1516483..1516608, 1517401..1517509,1520356..1520535,1522179..1522301, 1523867..1523925,1524549..1524654,1525522..1525609, 1525967..1526121,1527389..1527996) /locus_tag="PAL_GLEAN10013153" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_process: GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA]" /codon_start=1 /product="T-lymphoma invasion and metastasis-inducing protein 2" /protein_id="ELK09916.1" /db_xref="InterPro:IPR000219" /db_xref="UniProtKB/Swiss-Prot:Q8IVF5" /translation="MEGARDSQDPAPRPLARHLSDADRLRKVIQELMDTEKSYVKDLS CLFELYLEPLQNETFLTQDEMESLFGSLPEMLEFQKVFLETLEDGISASADFNVLETP SQFRKLLFSLGGSFLYYADHFKLYSGFCANHIKVQKVLERAKTDKAFKAFLDARNPTK QHSSTLESYLIKPVQRVLKYPLLLRELVSLTDHESEEHYHLTEALKAMEKVASHINEM QKIYEDYGTVFDQLVAEQSGTEKEVVFKRAVILVYKENCKLKKKLPSNSRPAHSSADL DPFKFRWLIPISALQVRLGNTAGTENNSIWELIHTKSEIEGRPETIFQLCCSDSESKT NIVKVIRSILRENFRRHIKCELPLEKTCKDRLVPLKNRVPVSAKLASSRSLKVLKNSS SGEWPGETGKGSSLDSDEGSLSSGTQSSGCHTAGGGHDPLKHPHAGSTEFSDSLIKES DILSDDEDYHQTLKQRSPTKDIEIQFQRLSISEDPDAPPAGQQAGTEGQPAAEQPKLV RGHFCAIKRKANSTRRDRGTLLKAQTRHQSLDSQAENANLDLSAVLEREFSVQSLASV VNEECFYESEAHGKS" assembly_gap 1524252..1524278 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1528674..>1536501) /locus_tag="PAL_GLEAN10013154" mRNA complement(join(<1528674..1528914,1536368..>1536501)) /locus_tag="PAL_GLEAN10013154" /product="Dimethyladenosine transferase 1, mitochondrial" CDS complement(join(1528674..1528914,1536368..1536501)) /locus_tag="PAL_GLEAN10013154" /codon_start=1 /product="Dimethyladenosine transferase 1, mitochondrial" /protein_id="ELK09917.1" /db_xref="UniProtKB/Swiss-Prot:Q8WVM0" /translation="MKVDVGVVHFTPLTQPRIAQPFKLVEKVVQNVFQFRRKFCHRGL GMLFPETQRLESTGKLLELADVDPTLRPRQLSVSHFKNLCDVYRKMCDEDPHLFAYNF REELKKNKSKFQEKDDTERYRL" assembly_gap 1549063..1549256 /estimated_length=194 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1549663..>1583539) /locus_tag="PAL_GLEAN10013156" mRNA complement(join(<1549663..1549895,1551853..1551931, 1566610..1566761,1568244..1568352,1580167..1580318, 1583407..>1583539)) /locus_tag="PAL_GLEAN10013156" /product="Mitochondrial dimethyladenosine transferase 1" CDS complement(join(1549663..1549895,1551853..1551931, 1566610..1566761,1568244..1568352,1580167..1580318, 1583407..1583539)) /locus_tag="PAL_GLEAN10013156" /note="GO_function: GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IEA]" /codon_start=1 /product="Mitochondrial dimethyladenosine transferase 1" /protein_id="ELK09918.1" /db_xref="InterPro:IPR001737" /db_xref="InterPro:IPR020598" /db_xref="UniProtKB/Swiss-Prot:Q2TBQ0" /translation="MAASGTLTSFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLT DKIVRKAGNLTNAYVYEVGPGPGGITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAP GKLRIVHGDVLTFKIEKAFPESLKRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENMSH RDGPFAYGRTQMTLTFQKEVAEHVLWEYRDGGSGLLPEVMTEFTQEVPGSAENHARGK QQHGRDESDVDGSSRFVFVAFWNCQIQKVCYDLLRVPHHRYETRDPCGHEAESSRERG VALGFCVPS" assembly_gap 1559113..1559158 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1568126..1568180 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1633395..>1655085) /locus_tag="PAL_GLEAN10013157" mRNA complement(join(<1633395..1633521,1647175..1647299, 1651390..1651536,1654855..>1655085)) /locus_tag="PAL_GLEAN10013157" /product="NADPH oxidase 3" CDS complement(join(1633395..1633521,1647175..1647299, 1651390..1651536,1654855..1655085)) /locus_tag="PAL_GLEAN10013157" /codon_start=1 /product="NADPH oxidase 3" /protein_id="ELK09919.1" /db_xref="InterPro:IPR013121" /db_xref="UniProtKB/Swiss-Prot:Q9HBY0" /translation="MVYQKEAQVHYSSGPRSLRPGSHAGHGIFREQLGLWGAPEEAEL AEDTAPGDRREVGIAPPSGPLRPDLDLAEFGLEVYFYWICRDPSAFEWFADLLLSLET RMSEQGKTHLLSYHIFLTGWDENQAIHIALHWDENTDVITGLKQKTFYGRPNWNNEFR QIAYNHPSSSIGVFFCGPKALSKTLRRMCRLHSSADPRGVHFYYNKESF" assembly_gap 1642783..1645703 /estimated_length=2921 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1655656..>1688961) /locus_tag="PAL_GLEAN10013158" mRNA complement(join(<1655656..1655733,1662270..1662432, 1665797..1666050,1667824..1667916,1672842..1672971, 1676164..1676345,1678851..1678996,1686888..1686972, 1687970..1688080,1688917..>1688961)) /locus_tag="PAL_GLEAN10013158" /product="NADPH oxidase 3" CDS complement(join(1655656..1655733,1662270..1662432, 1665797..1666050,1667824..1667916,1672842..1672971, 1676164..1676345,1678851..1678996,1686888..1686972, 1687970..1688080,1688917..1688961)) /locus_tag="PAL_GLEAN10013158" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0050660 - FAD or FADH2 binding [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]" /codon_start=1 /product="NADPH oxidase 3" /protein_id="ELK09920.1" /db_xref="InterPro:IPR000778" /db_xref="InterPro:IPR013112" /db_xref="InterPro:IPR013130" /db_xref="InterPro:IPR017927" /db_xref="InterPro:IPR017938" /db_xref="UniProtKB/Swiss-Prot:Q9HBY0" /translation="MGCWILNESLSVMFVSALAWARASAVCLNFNCMLILIPVSRNLI SFIRGSTICCRGPWRRQLDKNLKFHKLVAYGIAVNATIHIVAHLCNLERYHLSRSAET EGLRAALSQLGDAPNESYLNPIRAFHANPTTELLTTIAGITGLVISLALILIVTSSTE FIRQTSYELFWYTHHIFIIFFISLAIHGAGRMVRGQTPESLLLHNITFCRDHYAEWKA AAQCPVPQFSGKEPSAWKWVLGPVVLYACERVIRFWRFQQEVVITKVVSHPSGVLELH MKKRSFAMAPGQYVLIQCPAISSLQWHPFTLTSAPEEDFFSVHVRAAGDWTRALCEAF GADGQAPEESRSRPRLAVDGPFGATLMDVFHYPVSMCIAAGIGVTPFAALLKSIWYKC CESQTQPKLNKDYVFVIDAEVLILVLEIKFGFTSSQ" assembly_gap 1679289..1679482 /estimated_length=194 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1694497..1694564 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1718005..1718019 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1724706..1724726 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1728197..1728358 /estimated_length=162 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1867369..1867432 /estimated_length=64 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1889131..1889367 /estimated_length=237 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1899099..1899710 /estimated_length=612 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1948555..1948637 /estimated_length=83 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1958521..1958537 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1983466..1985155 /estimated_length=1690 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2022533..2022550 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2047187..2047248 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2050338..2051399 /estimated_length=1062 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2056169..2056188 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2119771..2119789 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2145028..2145719 /estimated_length=692 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2153478..2153521 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2208981..2209118 /estimated_length=138 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2244963..2245016 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2337528..2338053 /estimated_length=526 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2346660..2346693 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2349000..2349017 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2367428..2367451 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2415115..2415188 /estimated_length=74 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2430378..2430866 /estimated_length=489 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2463819..2463904 /estimated_length=86 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2496815..2496864 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2521257..2521689 /estimated_length=433 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2536922..2536961 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2551105..2552104 /estimated_length=1000 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2567914..2568497 /estimated_length=584 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2580849..2580873 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2581273..2581299 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2585530..2585562 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2605555..2605621 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2625428..2625675 /estimated_length=248 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2643963..2644309 /estimated_length=347 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2662363..2662442 /estimated_length=80 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2666900..2666911 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2670983..2670998 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2713203..2713236 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2713851..2713939 /estimated_length=89 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2714342..2715798 /estimated_length=1457 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2750799..2750826 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <2763312..>2766845 /locus_tag="PAL_GLEAN10013163" mRNA join(<2763312..2763497,2766774..>2766845) /locus_tag="PAL_GLEAN10013163" /product="AT-rich interactive domain-containing protein 1B" CDS join(2763312..2763497,2766774..2766845) /locus_tag="PAL_GLEAN10013163" /codon_start=1 /product="AT-rich interactive domain-containing protein 1B" /protein_id="ELK09921.1" /db_xref="UniProtKB/Swiss-Prot:Q8NFD5" /translation="MDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIG IQGRTPGAMGGMQYPQQQGQEELATDCINLVILDLYGDNFF" assembly_gap 2764631..2764897 /estimated_length=267 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2765306..2765340 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2767530..2767562 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2796019..2796049 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <2816066..>2856346 /locus_tag="PAL_GLEAN10013164" mRNA join(<2816066..2816283,2825848..2825968,2829971..2830120, 2856224..>2856346) /locus_tag="PAL_GLEAN10013164" /product="AT-rich interactive domain-containing protein 1B" CDS join(2816066..2816283,2825848..2825968,2829971..2830120, 2856224..2856346) /locus_tag="PAL_GLEAN10013164" /codon_start=1 /product="AT-rich interactive domain-containing protein 1B" /protein_id="ELK09922.1" /db_xref="UniProtKB/Swiss-Prot:Q8NFD5" /translation="MTLLSGLSAQGGDFTDRGSSLPSRASTADSFQEPLSVLRGGAVG RWFPALWSGSLFAAVSWRAAPAVLLFVWQSHRELALKSFLSKIYQSTGNLENRNEVFS LVLSQGKVLAQMPPQYGQQGVSGYCQQGQQPYYNQQPQPPHLPPQAQYLPPQSQQRYQ PQQDMSQEGYGTRSQPSLAPGKPNHEDLNLIQQERPSSLPVRH" assembly_gap 2854171..2854789 /estimated_length=619 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2864176..2864218 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2880967..2881019 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2887346..2887372 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2914696..2914745 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2929778..2929806 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <2936479..>3041444 /locus_tag="PAL_GLEAN10013166" mRNA join(<2936479..2936571,2945255..2945296,2989567..2989810, 3013537..3013626,3035427..3035606,3041401..>3041444) /locus_tag="PAL_GLEAN10013166" /product="AT-rich interactive domain-containing protein 1B" CDS join(2936479..2936571,2945255..2945296,2989567..2989810, 3013537..3013626,3035427..3035606,3041401..3041444) /locus_tag="PAL_GLEAN10013166" /codon_start=1 /product="AT-rich interactive domain-containing protein 1B" /protein_id="ELK09923.1" /db_xref="UniProtKB/Swiss-Prot:Q8NFD5" /translation="MGPRSLCPHDFSASWFHHNFQPAVLSRPSRQVEVLASEDTAFGL KDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPS PSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMT GTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHSGISSFQQSNSSGTYGPQMSQYGPQGS VRSVSLSSTGYC" assembly_gap 2937626..2937678 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2960127..2961705 /estimated_length=1579 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2965692..2965732 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3029020..3031319 /estimated_length=2300 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3048069..>3050300 /locus_tag="PAL_GLEAN10013167" mRNA join(<3048069..3048132,3048247..3048574,3050213..>3050300) /locus_tag="PAL_GLEAN10013167" /product="AT-rich interactive domain-containing protein 1B" CDS join(3048069..3048132,3048247..3048574,3050213..3050300) /locus_tag="PAL_GLEAN10013167" /codon_start=1 /product="AT-rich interactive domain-containing protein 1B" /protein_id="ELK09924.1" /db_xref="UniProtKB/Swiss-Prot:Q8NFD5" /translation="MCRGSVSGTASLASADERISKGNYSRPPTYSGVPSASYSGPGPG MGINANNQMHGQGPSQPCGAMPLGRLPSAGMQSRPFPGNMSSMTPSSPGMSQQGGPGM GPPMPTVNRKAQEAAAAVMQAAANSAQSRNVPSSTPRQLHGTECHATPRNPPHLCVE" gene <3050873..>3103735 /locus_tag="PAL_GLEAN10013168" mRNA join(<3050873..3051032,3056699..3056846,3065770..3065915, 3073701..3073810,3074524..3074682,3080316..3080525, 3083308..3083512,3088608..3088746,3088990..3089162, 3092576..3092726,3095293..3095389,3096680..3097463, 3099417..3099547,3102014..>3103735) /locus_tag="PAL_GLEAN10013168" /product="AT-rich interactive domain-containing protein 1B" CDS join(3050873..3051032,3056699..3056846,3065770..3065915, 3073701..3073810,3074524..3074682,3080316..3080525, 3083308..3083512,3088608..3088746,3088990..3089162, 3092576..3092726,3095293..3095389,3096680..3097463, 3099417..3099547,3102014..3103735) /locus_tag="PAL_GLEAN10013168" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]" /codon_start=1 /product="AT-rich interactive domain-containing protein 1B" /protein_id="ELK09925.1" /db_xref="InterPro:IPR001606" /db_xref="InterPro:IPR021906" /db_xref="UniProtKB/Swiss-Prot:Q8NFD5" /translation="MLSSCRLGPCIVEHRFDCYCHSCHRSDLLLHTPLHSECRDLICP EMHSRRHDLASQQTDSDPDPALPSARPRQTQQRSAARPVPAVRAWTGLDGRDWRSPPL RQGGFPGMNQSGLMASSSPYSQPMNNSSGLMNTQVPPYSVTPNMVNSSTASMGLADMM SPGESKLPLPLKADGKEEGAAQPESKTKDSYSSQGISQPPTPGNLPVPSPMSPSSASI SSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGSEPERKLWVDRYLTFM EERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAA SSLKKQYIQYLFAFECKIERGEEPPPEVFSTGETKKQPKLQPPSPANSGSLQGPQTPQ STGSNSMAEVPGDLKPPTPASTPHGQMTPMQGGRSSTVSVHDPFSDASDSSFPKRNSM TPSAPYQQSMSMPDVMGRVPYEPNKDPFGGMRKVPGSSEPFMTQGQLPTSGMQDMYNQ SPSGAMSSLGLGQRPQFPYGTSYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQP NYKRHMDGMYGPPAKRHEGDMYNMQYGSQQQELYNQYGGSYSGPDRRPVQGQYAYPYS RERMQGPGQVQPHGIPPPMMGGPMQSSSSEGPQQSMWATRNDMPYPYPNRQGPGGPAQ APPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQPYMSSSASMQPITRPPQSSYQTPP SLPNHISRAPSPASFQRSLESRMSPSKSPFLPSMKMQKVMPAVPTSQVTGPPPQPPPI RREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINI LLYDDSTVATFNLSQLSGFLELLVEYFRKCLIDIFGILTEYEVGDPSQKALGHNAVKK GDSQALADDSGEEEEDAECTDGEEDEEEEEEEEDGGKAGTEKGSTASTPPDATADPRE KPRQASKFDKLPIKVVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHF ESKMEIPPRRRPPPVSSAGRKKEQEGKADSEEQQEKSIIATIDDVLSARPGALPEDAT PGAQTESSKFPFGIHQAKSHRNIKLLEDEPRSRDETPLCTVAHWQDSLAKRCICVSNI VRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSK DEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPF PTVGPNSVLSPQRLVLEALCKLSIQDSNVDLILATPPFSRQEKFYATLVRYVGDRKNP VCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHTLMHMQ PPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICD VLFQIGQL" assembly_gap 3104563..3104624 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3111904..3112870 /estimated_length=967 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3125005..3125050 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3130463..3130479 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3141626..3141701 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3150803..3151499 /estimated_length=697 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3154704..3155241 /estimated_length=538 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3180065..3180084 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3182097..3182940 /estimated_length=844 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3186363..>3187361) /locus_tag="PAL_GLEAN10013169" mRNA complement(<3186363..>3187361) /locus_tag="PAL_GLEAN10013169" /product="L-lactate dehydrogenase A-like 6B" CDS complement(3186363..3187361) /locus_tag="PAL_GLEAN10013169" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]" /codon_start=1 /product="L-lactate dehydrogenase A-like 6B" /protein_id="ELK09926.1" /db_xref="InterPro:IPR001236" /db_xref="InterPro:IPR001557" /db_xref="InterPro:IPR015955" /db_xref="InterPro:IPR022383" /db_xref="UniProtKB/Swiss-Prot:Q9BYZ2" /translation="MATVKGELMSNLTSEEGVHRNKISIIGTGSVGMACAISILLKGL SDELALVDASEDKVKGETMDLQHGSPFMKMPNIVCSKDYLVTANSNLVVITAGARQEK GETRLNLVQRNVAIFKSIISNIIQYSPHCKLIVVSNPVDILTYVAWKLSEFPQNRVIG SGCNLDTARFRFLIGQKLGIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDI GTDKDPEQWNNVHKDVIASAYDIIKMKGYTSWAIGLSVADLSESILKNLKRVHPVSTI VKGLYGINEEVSLSVPCVLGENGITDLIKVKLTPEEEARLKKSAETLWKLQKDLKF" assembly_gap 3193779..3193837 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3193995..>3205747) /locus_tag="PAL_GLEAN10013170" mRNA complement(join(<3193995..3194092,3197792..3197876, 3198328..3198465,3204719..3204819,3205423..>3205747)) /locus_tag="PAL_GLEAN10013170" /product="hypothetical protein" CDS complement(join(3193995..3194092,3197792..3197876, 3198328..3198465,3204719..3204819,3205423..3205747)) /locus_tag="PAL_GLEAN10013170" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09927.1" /db_xref="InterPro:IPR009792" /db_xref="UniProtKB/Swiss-Prot:Q5R987" /translation="MGPFLGDGLGGHRPRGRTGGHRHGIFPALQRGVRIWGQRPFPGQ VFRWNRGESGTFLLRLALTPPGPSGCRTQSRRLINMEAAGAGDGERSSGLEAPGSTDD RLFLVKGGIFLGTVAAAGMLAGFVTTLSLAKKKSPEWFNKGSVATAALPESGSSLALR ALGWGSLCAWCGVGVISFAVWKALGVHSLKSSTFEMTGFFVIKFLVGSSWTRLFVTGF VLSGGFIHLETTARSESPAQIPELLAHGPT" assembly_gap 3199371..3199396 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3217724..3217743 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3234714..3234784 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3242095..3243228 /estimated_length=1134 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3256200..3256478 /estimated_length=279 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3263467..3264205 /estimated_length=739 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3314028..3314042 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3315237..3315276 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3372282..>3463643 /locus_tag="PAL_GLEAN10013173" mRNA join(<3372282..3372372,3406186..3406344,3433426..3433563, 3436870..3436930,3455228..3455330,3463245..>3463643) /locus_tag="PAL_GLEAN10013173" /product="Putative palmitoyltransferase ZDHHC14" CDS join(3372282..3372372,3406186..3406344,3433426..3433563, 3436870..3436930,3455228..3455330,3463245..3463643) /locus_tag="PAL_GLEAN10013173" /note="GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Putative palmitoyltransferase ZDHHC14" /protein_id="ELK09928.1" /db_xref="InterPro:IPR001594" /db_xref="UniProtKB/Swiss-Prot:Q8BQQ1" /translation="MGTLLRTSFSDPGVLPRATPDEAADLERQIDIANGTSSGGYRPP PRTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGKRNY RFFYMFILSLSFLTVFIFAFVITHVILRSQQTGFLNALKDTPARYPFCLIDRRGYVQP DTPQPAAPPNGMAAYGATQPQSDMCDQDQCIQSTKFVLQAAATPLLQSEPSLTSDELH LPGKPGLGTPCASLTLGQPTPPSSMPNLSTEAALTDILPLKEEHVGHQFLTPEEAPSP PRLLAGSPLAHSRTVHVLGLASQDSLHEDSVRGLVKLSSV" assembly_gap 3382203..3382220 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3385976..3386033 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3397664..3397937 /estimated_length=274 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3448742..3448802 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3454920..3454970 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3476921..3477335 /estimated_length=415 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3491377..>3491556 /locus_tag="PAL_GLEAN10013176" mRNA <3491377..>3491556 /locus_tag="PAL_GLEAN10013176" /product="hypothetical protein" CDS 3491377..3491556 /locus_tag="PAL_GLEAN10013176" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09929.1" /translation="MSGASVQFDILPRAQDPDPPAADYSLAGEAFQLNRLQLVGDATL ITSHQLARVFSLVIG" assembly_gap 3500313..3503478 /estimated_length=3166 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3511858..3511951 /estimated_length=94 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3519087..3519098 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3526606..>3561892) /locus_tag="PAL_GLEAN10013177" mRNA complement(join(<3526606..3527154,3561809..>3561892)) /locus_tag="PAL_GLEAN10013177" /product="hypothetical protein" CDS complement(join(3526606..3527154,3561809..3561892)) /locus_tag="PAL_GLEAN10013177" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09930.1" /translation="MAPGSARRFAEVPPQPGSPQLGARPGDQEALIQGRQALCVLYNA PHNPPPRLVWSQVRVTAQTDMRENTALLPQLSPNIRKEGDSWQSFQRGAQRSYLHGRS WRQTVAGPTFPCLRLIPLVLWTHLCAARSGHRSPPVFTSNPLLYTGLPLQQPPSLLPL PALLCGLLHLLLSASRHSPRWDVRCLSFVPRETPTFALGGICQRRWDPGQ" assembly_gap 3562049..3562879 /estimated_length=831 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3570108..3570232 /estimated_length=125 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3580607..3580987 /estimated_length=381 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3584688..3584707 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3589449..>3641067 /locus_tag="PAL_GLEAN10013178" mRNA join(<3589449..3589526,3592037..3592111,3593339..3593464, 3607542..3607707,3609325..3609475,3612721..3612805, 3614845..3614970,3615091..3615208,3624489..3624619, 3628547..3628650,3629848..3629951,3632862..3632939, 3634103..3634179,3635283..3635372,3637173..3637287, 3638958..3639049,3641020..>3641067) /locus_tag="PAL_GLEAN10013178" /product="Sorting nexin-9" CDS join(3589449..3589526,3592037..3592111,3593339..3593464, 3607542..3607707,3609325..3609475,3612721..3612805, 3614845..3614970,3615091..3615208,3624489..3624619, 3628547..3628650,3629848..3629951,3632862..3632939, 3634103..3634179,3635283..3635372,3637173..3637287, 3638958..3639049,3641020..3641067) /locus_tag="PAL_GLEAN10013178" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0035091 - phosphoinositide binding [Evidence IEA]; GO_process: GO:0007154 - cell communication [Evidence IEA]" /codon_start=1 /product="Sorting nexin-9" /protein_id="ELK09931.1" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR001683" /db_xref="InterPro:IPR011511" /db_xref="InterPro:IPR019497" /db_xref="UniProtKB/Swiss-Prot:Q91VH2" /translation="MYYFASEPGNNELTVNEGEIITITNLDVGGGWLEGKNSRGERGL VPTDYVEILPNDAKDSFSCGNSVADQAFLDSLSASTAQANASAANSNNQVSSGNDPWS AWSASKSGNWDSTDGWGAKPEGAAAQRNTSNNWDTAFGHPQAYQGPATGDDDDWDEDW DDPKSSSPYFKDSESAEAGGAARGNSRAGSSSMKLPLNKFPGFAKPGMEQYLLAKQLA KPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVN HRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHP VIAESEVFQQFLNFRDEKEWKTGKRKAEKDELVGVMIFSTMEPEAPDLDLIEIEQKCE AVGKFTRAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGET DLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGAHKGAIEK VKESDKLVATSKITPQDKQNMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQ VQFYETIAEKLRQALGRFPVM" assembly_gap 3656403..3657010 /estimated_length=608 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3678476..3678836 /estimated_length=361 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3681777..>3756656 /locus_tag="PAL_GLEAN10013181" mRNA join(<3681777..3681876,3691039..3691309,3694948..3695173, 3702457..3702540,3711193..3711254,3715298..3715394, 3717766..3717938,3719055..3719136,3719749..3719898, 3725023..3725172,3725257..3725422,3735105..3735186, 3735878..3736018,3743536..3743728,3749555..3749713, 3750746..3750902,3751855..3751972,3755540..3755758, 3755854..3755932,3756480..>3756656) /locus_tag="PAL_GLEAN10013181" /product="Synaptojanin-2" CDS join(<3681777..3681876,3691039..3691309,3694948..3695173, 3702457..3702540,3711193..3711254,3715298..3715394, 3717766..3717938,3719055..3719136,3719749..3719898, 3725023..3725172,3725257..3725422,3735105..3735186, 3735878..3736018,3743536..3743728,3749555..3749713, 3750746..3750902,3751855..3751972,3755540..3755758, 3755854..3755932,3756480..3756656) /locus_tag="PAL_GLEAN10013181" /note="GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]" /codon_start=1 /product="Synaptojanin-2" /protein_id="ELK09932.1" /db_xref="InterPro:IPR000300" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR002013" /db_xref="InterPro:IPR005135" /db_xref="InterPro:IPR015047" /db_xref="UniProtKB/Swiss-Prot:O15056" /translation="VSSPAPEEKEVIRGQYGKLTDAYGCLGELRVKSGGASLSFLVLV TGCTSVGRIPEAEIYKITAIDFYPLQEGAKEEDRLAALRKVLNSGVFYFSWPNDGSRF DLTVRAQKQGDDSYEWGNSFFWNQLLHVPLRQHQVSCCDWLLKVICGVVAIRTVYASH KQAKVCLISRISCARAGARFHTRGVNDDGHVSNFVETEQTIYMDDGVSSFVQIRGSVP LFWEQPGLQVGSHHLKLTRGLEANAPAFDRHMVLLKEQYGKQVVVNLLGSRGGEEVLN RAFKKLLWASCHAGDTPMINFDFHQFAKGGKLEKLENLLRPQLKLHWEDFDVFARGED VSPRFQKGTLRMNCLDCLDRTNAVQSFLALEVLHLQLESLGLSSKPVADRFVESFKAM WSLNGHSLSKMFTGSRALEGKAKVLHLQLESLGLSSKPVADRFVESFKAMWSLNGHSL SKMFTGSRALEGKAKVGKLKDGARSVSRTIQSNFFDGVKQEAIKLLLVGDVYTEEAVD KGRMLLDNTALLDDSSPADIFAVGFEEMVELSAGNIVNASTTNRKMWGEQLQRAISRS HRYILLTSAQLVGVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHS SSFCFVCSHLTAGQSQVKERNEDYREITQKLSFPTGRNIFSHDYVFWCGDFNYRIDLT YEEVFYFVKRQDWKKLLEFDQLQLQKSNGKIFKDFHEGSINFGPTYKYDVGSAAYDTS DKCRTPAWTDRVLWWRKRQPFDRTAEELNLLDNDLDADTKVRHTWSPGILKYYGRAEL QASDHRPVLAIVEVEVQEVDVGARERVFQEVSSFQGPLDATVVVNLQSPTSEEKNEFP EDVRTELMQTLGNYGTIVLVRINQGQMLVTFADSHSALNVLDVDGMKVKGRAVKIRPK TKDWLKGLQEEIIRKRDSLPCVSPTASSCLLEENFDFTSLDYESEGK" assembly_gap 3720071..3723075 /estimated_length=3005 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3726660..3731096 /estimated_length=4437 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3731586..3735079 /estimated_length=3494 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3738580..3743031 /estimated_length=4452 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3743759..3743915 /estimated_length=157 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3746278..3747596 /estimated_length=1319 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3756682..>3767511 /locus_tag="PAL_GLEAN10013183" mRNA join(<3756682..3756783,3758734..3758932,3760361..3760473, 3761605..3761713,3765007..3765158,3766783..>3767511) /locus_tag="PAL_GLEAN10013183" /product="Synaptojanin-2" CDS join(3756682..3756783,3758734..3758932,3760361..3760473, 3761605..3761713,3765007..3765158,3766783..3767511) /locus_tag="PAL_GLEAN10013183" /codon_start=1 /product="Synaptojanin-2" /protein_id="ELK09933.1" /db_xref="UniProtKB/Swiss-Prot:O15056" /translation="MVRRAGGSPSNGRGGSGSLLRPSLEKVKVGLFRVVALCTPQPDP DPLVHAPPCPPDDADLAELKQELEAVGDFRHRSPSRSLSVPSRPRPPHPPQRPPPPTG LMVKKSASDVSISSGTHGQYSILQTAKLLPGAPQQAPKARTGISKPYNVKQIKTTNAQ EAEAAIRCLLEARGGALGEALSATALGDQAPSTVDPAAGVAPRLPRRPAPRVPAIKKP TLRRTGKPTSPEEPFGQQAARFTIEPLETSLETPPLATAPPVPKPRTLQPGRDAERRP SVGKPEPYDAPAVATTPLVEVPPLVPQVPPRRKKSAPAAFHLQVLQTNSQLLQGLACG GSNGPPAHQPDGGALFPPSAFLGSASAASSETDGPQGTKPEAAPALGDYQDPFWSLLQ HPKLLNNAWLSKSSDPLDSGSRHLEKAHTAPQQVSGTAAEEPSPEHRHKDFGHWVAVS DKDQRTVLQVFDPLERT" assembly_gap 3757126..3758077 /estimated_length=952 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3762739..3763810 /estimated_length=1072 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3779061..>3813702) /locus_tag="PAL_GLEAN10013184" mRNA complement(join(<3779061..3779197,3780716..3780859, 3783165..3783262,3783927..3784021,3785026..3785167, 3786182..3786286,3786570..3786720,3791282..3791444, 3793176..3793289,3804637..3804765,3805773..3805894, 3807633..3807764,3808738..3808827,3809850..3809986, 3812551..3812587,3813390..>3813702)) /locus_tag="PAL_GLEAN10013184" /product="Protein SERAC1" CDS complement(join(3779061..3779197,3780716..3780859, 3783165..3783262,3783927..3784021,3785026..3785167, 3786182..3786286,3786570..3786720,3791282..3791444, 3793176..3793289,3804637..3804765,3805773..3805894, 3807633..3807764,3808738..3808827,3809850..3809986, 3812551..3812587,3813390..3813702)) /locus_tag="PAL_GLEAN10013184" /note="GO_function: GO:0005488 - binding [Evidence IEA]" /codon_start=1 /product="Protein SERAC1" /protein_id="ELK09934.1" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/Swiss-Prot:Q2TBM9" /translation="MCSHYQPSLLVLHLSGGSINSHSKDRWPPDGDIPFAGSCFLSLS QQPLLPLRCLWTVPVRQLKHLSLAAHGLGELLHRRSHFQAPIENGPLLLQPRVAWPFD KAGNIIKLTGSLILGGSLFLTYEALALKKSLTLDSQVVEREKMKSYIYVNTVPIDKRE NHGILYQARKELHKAVRKVLATSAKILQGPFADTFSTVDLEDHECAVWLLLQKSRSDD RAARMQAVQEMLAARHWHDYQYRTIAQACDLRTLIGLARSKESDLRFFLRPPRLPSLK EDSTIEEELRHLLASLPQTELDECIQYFTSLALSESSQSLAAQKGGLWCFGGNGLPYA ESFGEVPSAAVEMFCLDALVKHSEISTHCDKIEANGGLQLLQRLYQLHKDCPKVQRNI MRIIGNMALNEHLHSPIVQSGWVSILAEAMKSQDIMEASHAARTLANLDRETVREKYQ DGVYVLHPQYRTRSKLIWIVEVGLGGKEIGNQISLGLDLKRLEKVYVSQPIKADVLFV HGLMGAAFKTWRQQDNDQVLNEKVSEDETRYTTCWPKTWLARDCPSLRIISVEYDTSL SDWRARCPMERKSIAFRSNELLRKLRAAGVGDRPVIWVSHSMGDSPALKTLQDDFLEF AKDKNFQVLNFVETLPTSIGSMIKLHVVPVESADLGIGDLIPVDVNHLNICKPEKKDA FLYQRTLRFIRETLAKDLEN" assembly_gap 3798372..3798413 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3828771..3828782 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3855230..>3855469 /locus_tag="PAL_GLEAN10013186" mRNA <3855230..>3855469 /locus_tag="PAL_GLEAN10013186" /product="hypothetical protein" CDS 3855230..3855469 /locus_tag="PAL_GLEAN10013186" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09935.1" /translation="MPYIVLSVNNFIEKPIEFRRIRDQCCFCILQTEEWRPERWRDVP ALISHQAVVQMTAGPCDRVCSSVLTSFAMRWLKQK" gene complement(<3855598..>3870368) /locus_tag="PAL_GLEAN10013187" mRNA complement(join(<3855598..3855830,3865058..3865218, 3870298..>3870368)) /locus_tag="PAL_GLEAN10013187" /product="hypothetical protein" CDS complement(join(3855598..3855830,3865058..3865218, 3870298..3870368)) /locus_tag="PAL_GLEAN10013187" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09936.1" /translation="MREQNISQITMNGKWKQRLAVWTMNTASYDTRKKPVGAVYETMA TETDCPLGGSGSLDPWRPGSWPPELSSSSFSVIALRMPAQGWEATDGGAERAEQIESV ARIWAGLGKPAWTSRGCAGASLDTHLVGEGLAALWEAARNESPGAGSRGLQC" assembly_gap 3859913..3860616 /estimated_length=704 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3874143..>3877334 /locus_tag="PAL_GLEAN10013188" mRNA join(<3874143..3874268,3877179..>3877334) /locus_tag="PAL_GLEAN10013188" /product="hypothetical protein" CDS join(3874143..3874268,3877179..3877334) /locus_tag="PAL_GLEAN10013188" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09937.1" /translation="MRTVKEAIEVEQKWHPCSVHSVVQGTLLAHNRERTRAGTASKFS EEGLPKEFLPQQSAASAREHNAVVCAVRMTDVLIVKELDPRRYSRTSVS" assembly_gap 3899891..3900010 /estimated_length=120 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3906111..>3906629 /locus_tag="PAL_GLEAN10013190" mRNA <3906111..>3906629 /locus_tag="PAL_GLEAN10013190" /product="Tubby-related protein 4" CDS 3906111..3906629 /locus_tag="PAL_GLEAN10013190" /codon_start=1 /product="Tubby-related protein 4" /protein_id="ELK09938.1" /db_xref="UniProtKB/Swiss-Prot:Q9JIL5" /translation="MYAAVEQGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEG WLATGNGRGVVGVTFTSSHCRRDRNTPQRINFNLRGHNSEVSRGALSLSSGPSQWGFR APLLPSARNLLCFSFLDWLPGEAWQTVPSVLSVLSVPVGRISGGAPGHLLGTRDRTSL PSHHSEQAPCST" assembly_gap 3923200..3923240 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3935710..>3938249) /locus_tag="PAL_GLEAN10013191" mRNA complement(join(<3935710..3935802,3938019..>3938249)) /locus_tag="PAL_GLEAN10013191" /product="hypothetical protein" CDS complement(join(3935710..3935802,3938019..3938249)) /locus_tag="PAL_GLEAN10013191" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09939.1" /translation="MAGRSTLCLWGKKPKGFCDHGWGLWLGQSQLLEQQEEAERARHL NPAKGIGRHTLLPSAPRTAAGPPVETRFSAKGLDLLAGHTGSQSVVGDSTNSQEGRFT ALGKS" assembly_gap 3941820..3941889 /estimated_length=70 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3967368..>4036490 /locus_tag="PAL_GLEAN10013192" mRNA join(<3967368..3967463,3978939..3979067,3983016..3983177, 3997801..3997981,3999351..3999485,4003975..4004141, 4013335..4013559,4014654..4014888,4021890..4022034, 4024649..4024793,4026001..4026094,4028997..4029140, 4032209..4033104,4033402..4034721,4036374..>4036490) /locus_tag="PAL_GLEAN10013192" /product="Tubby-related protein 4" CDS join(3967368..3967463,3978939..3979067,3983016..3983177, 3997801..3997981,3999351..3999485,4003975..4004141, 4013335..4013559,4014654..4014888,4021890..4022034, 4024649..4024793,4026001..4026094,4028997..4029140, 4032209..4033104,4033402..4034721,4036374..4036490) /locus_tag="PAL_GLEAN10013192" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0023034 - intracellular signaling pathway [Evidence IEA]" /codon_start=1 /product="Tubby-related protein 4" /protein_id="ELK09940.1" /db_xref="InterPro:IPR000007" /db_xref="InterPro:IPR001496" /db_xref="InterPro:IPR008983" /db_xref="InterPro:IPR011046" /db_xref="UniProtKB/Swiss-Prot:Q9NRJ4" /translation="MVGKSKGTGYCSHRLQPCPEHGQGRSPGFRFRVVLVRWNEPYQK LATCDADGGIFVWIQYEGRWSVELVNDRGAQVSDFTWSHDGTQALISYRDGFVLVGSV SGQRHWSSEINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHEADGV LGMSWNYPAFLVEDSSESDTDSDDYAPPQDGPAAYPIPVQNIKPLLTVSFTSGDISLM NNYDDLSPTVIRSGLKEVVAQWCTQGDLLAVAGMEWQTQLNDLPNGPLLKSAMVKFYN VRGEHIFTLDTLVQRPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIA SALREDKDVSKLTLPPRLCSYLSTAFIPTIKPPIPDPNNMRDFVSYPSAGNERLHCTM KRTEDDPEVGGPCYTLYLEYLGGLVPILKGRRISKLRPEFVIMDPRTDGKSDEIYGNS LISTVIDSCNCSDSSDIELSDDWAAKKSPKIPRASKSPRLPRINIEARKSPKLSRAAQ EMSRSPRLPMRKPSIGSPSLTRREFPFEDVTQHNYLAQVTSNIWGTKFKIVGLAAFLP TSLGAVIYKTSLLHLQPRQMTIYLPEVRKVSTDYVHLPVFSPNVFSEDEDDLPVTGAS GVPENNPPCTVNIPIAPIHSSAQAMSPTQSIGLVQSLLANQNVQLDVLTNQTTAVGAP EHASDNATQYPVSNRYSSPGQVIFGGVEMGRLIPNPPQLSLPSAPGVAQLSVVDHGGD RELEHLQKPVKALRPAPSLAAEGDAVVFGATQEVQVAKLNPPPPYPGTIPAAPTTAAP PPPLPPPQPPVDVCLKKGDFSLYPTAAHYQPPLGYERITTFDSSGNVEEVCRPRTRML CSQNTYTLPGPGSSATLRLTATEKKVPQPCTSATLNRLTVPRYSIPTGDPPPYPDLAG PLGPSSYSLLSPPDGARERTDYVNSAFTEDEALSQHCPVEKPLRHPALPEAAVAVKRP PPYQWDPVLGEDIWVPQERTAQTAVPNPLKLPPLVVGQSQHLDVSRVPFVSPKSPASP TATFQTGYGMGVPYPGSYNTPPLPGVQAPCSPKDTLSPTQFAQQEPAVVLQPAYPPSL SYCTLPPMYPGSSTCSSLQLPPIALHPWNSYSACPPVQNPQGTLPPKAHLVVEKPLVS PPPTDLQSHLGTEVMVETADNFQEVLSLTESPVPQRTEKFGKKNRKRLDSRAEEGNVQ AVTEGKVKKEARTLSDFNSLISSPRLGREKKKVKSQKDQLKAKKLNKTSEFQDSSESE PELFISGDELMNQSQGSKKGWKSKRSLRTASELEEFKCRKASEKEDGRLGSQGFVYVM ANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFGRIDGNAYILDFQYPF SAVQAFAVALANVTQRLK" assembly_gap 3967752..3967787 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4018189..4018217 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4033144..4033394 /estimated_length=251 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4041874..4041926 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4053803..4054503 /estimated_length=701 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4069580..4069970 /estimated_length=391 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4073273..4073343 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4075633..4075733 /estimated_length=101 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4078864..>4079121 /locus_tag="PAL_GLEAN10013195" mRNA <4078864..>4079121 /locus_tag="PAL_GLEAN10013195" /product="hypothetical protein" CDS 4078864..4079121 /locus_tag="PAL_GLEAN10013195" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09941.1" /translation="MRLYTLSKRHFVLVFVVFFVCFGLTVFIGIRGKVQVWILLSFLV LLLQRFLAQPSCTHLLSPAKGPVVRPPSGGVTLLPSHTARA" gene <4085263..>4108856 /locus_tag="PAL_GLEAN10013196" mRNA join(<4085263..4085319,4087027..4087117,4088343..4088464, 4091829..4091939,4096297..4096377,4097811..4097910, 4098388..4098518,4098716..4098807,4099738..4099795, 4104216..4104318,4104816..4104867,4106358..4106440, 4107434..4107529,4108319..4108385,4108778..>4108856) /locus_tag="PAL_GLEAN10013196" /product="Transmembrane protein 181" CDS join(<4085263..4085319,4087027..4087117,4088343..4088464, 4091829..4091939,4096297..4096377,4097811..4097910, 4098388..4098518,4098716..4098807,4099738..4099795, 4104216..4104318,4104816..4104867,4106358..4106440, 4107434..4107529,4108319..4108385,4108778..4108856) /locus_tag="PAL_GLEAN10013196" /codon_start=1 /product="Transmembrane protein 181" /protein_id="ELK09942.1" /db_xref="UniProtKB/Swiss-Prot:Q9P2C4" /translation="GPKVIQTSAANFSLNNSKKIKPIQIRSNPLSKYNQQLWLTCVVE LDHSKETFSQISFPMTVKVSGVAQDGTTTFINSKAHNRTRTLTCARKCAEIIVAHLGY LNYTQYTVIVGFEHLDVPVKEMNFIWKTYNSAFSKLEVWFRFVFVVLTFIVTCLFGHS LRKFSMRDWGIEQKWMSILLPLLLLYNDPFFPLSFLVNSWFPGMLDDLFQSVFLCALL LFWLCVYHGIRVQGERKCLTFYLPKFFIVGLLWLASVTLGIWQTVNELHDPTYQYRVD TGNFQGMKMFFMVVTAVYILYLLFLIVRACSELRHMPYVDLRFEFLTALTFVVLVISI VILYLRFGAQVLQDNFVAELSTHYQNLPPAEFLSLYGLLNFYLYTLAFVYSPSTNALY ESQLKDNPAFSMLNDSEDDVIYGSDYEEMPLQNGQAIRAQYQEGSDSD" assembly_gap 4102521..4103923 /estimated_length=1403 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4112985..>4122956) /locus_tag="PAL_GLEAN10013198" mRNA complement(join(<4112985..4113055,4113373..4113450, 4113878..4114001,4116702..4116743,4122765..>4122956)) /locus_tag="PAL_GLEAN10013198" /product="Dynein light chain Tctex-type 1" CDS complement(join(4112985..4113055,4113373..4113450, 4113878..4114001,4116702..4116743,4122765..4122956)) /locus_tag="PAL_GLEAN10013198" /codon_start=1 /product="Dynein light chain Tctex-type 1" /protein_id="ELK09943.1" /db_xref="InterPro:IPR005334" /db_xref="UniProtKB/Swiss-Prot:P63172" /translation="MDKRLALDNKMYARVTPATYEEHLLSLHLADHFFSLDDAGVTLL SQPCPSMEKTLGRATAALCSTSFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVV EQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCI VSTFGLSI" assembly_gap 4119202..4119631 /estimated_length=430 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4135935..>4198657 /locus_tag="PAL_GLEAN10013199" mRNA join(<4135935..4136044,4137838..4137931,4180124..4180258, 4187459..4187637,4190844..4190946,4192759..4192929, 4195152..4195257,4196185..4196287,4197230..4197435, 4198548..>4198657) /locus_tag="PAL_GLEAN10013199" /product="Synaptotagmin-like protein 3" CDS join(4135935..4136044,4137838..4137931,4180124..4180258, 4187459..4187637,4190844..4190946,4192759..4192929, 4195152..4195257,4196185..4196287,4197230..4197435, 4198548..4198657) /locus_tag="PAL_GLEAN10013199" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]" /codon_start=1 /product="Synaptotagmin-like protein 3" /protein_id="ELK09944.1" /db_xref="InterPro:IPR000008" /db_xref="InterPro:IPR008973" /db_xref="InterPro:IPR010911" /db_xref="InterPro:IPR011011" /db_xref="InterPro:IPR018029" /db_xref="UniProtKB/Swiss-Prot:Q4VX76" /translation="MAREVDLNSLQDLERELILQVLYRDQAVQNVEEERVRSLKTHLQ HLRWKGGKGVSQEDKEKSCARCQRKVSAPDILKPLSQESPKRLTLPVLKQEDLPPRVK PSTLFSGGLRQGSLISINSTCTEMGNFDNANVTGEIEFAIRYCFKTHSLEICIEACRN LAYGEDKKKKCNPYVKTYLLPDRSSQGKRKSGVQRSTVDPTFQETLKYQVEPAQLVTR RLQVSVWHLGTLARRVFLGEVIIPLATWDFKDSTTQSSRWYPLRAKAEKYEEGLLPNN GELAVRAKLVLPAGPSKLQESQEGAGQPSCDGQLCLVVLGAKDLPVRSDGTLNSFVRG CLTLPDKQKLRLKSPVLKKQACPQWKHSFVFNGVSPSQLRQSSLELTVWDRAAFGVND RLLGGARLGSKEDPAGGADSGSQSKLQWQRVLSSPNLWTDITLILH" assembly_gap 4136432..4137257 /estimated_length=826 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4137936..4137991 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4160059..4160186 /estimated_length=128 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4198295..4198363 /estimated_length=69 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4200487..>4226377) /locus_tag="PAL_GLEAN10013201" mRNA complement(join(<4200487..4200651,4200810..4201058, 4202499..4202591,4202881..4203041,4203634..4203764, 4204153..4204316,4209304..4209400,4215889..4216035, 4216893..4216976,4217417..4217691,4218626..4218721, 4223178..4223261,4226348..>4226377)) /locus_tag="PAL_GLEAN10013201" /product="Ezrin" CDS complement(join(4200487..4200651,4200810..4201058, 4202499..4202591,4202881..4203041,4203634..4203764, 4204153..4204316,4209304..4209400,4215889..4216035, 4216893..4216976,4217417..4217691,4218626..4218721, 4223178..4223261,4226348..4226377)) /locus_tag="PAL_GLEAN10013201" /note="GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0019898 - extrinsic to membrane [Evidence IEA]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IEA]" /codon_start=1 /product="Ezrin" /protein_id="ELK09945.1" /db_xref="InterPro:IPR000299" /db_xref="InterPro:IPR000798" /db_xref="InterPro:IPR008954" /db_xref="InterPro:IPR011259" /db_xref="InterPro:IPR018979" /db_xref="InterPro:IPR018980" /db_xref="InterPro:IPR019748" /db_xref="InterPro:IPR019749" /db_xref="InterPro:IPR019750" /db_xref="UniProtKB/Swiss-Prot:P15311" /translation="MLPRMPGAPLINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIG LREVWYFGLQYVDNKGFPTWLKLDKKVSAQEVRKENPLQFKFRAKFYPEDVSEELIQD ITQKLFFLQVKDGILSDEIYCPPETAVLLGSYAVQAKFGDYNKDTHKSGYLSSERLIP QRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDSAMLEYLKIAQDLEMYGINYFEIKNKK GTDLWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFY APRLRINKRILQLCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERQQLETEKK RRETVEREKEQMMREKEELMLRLQDYELKTKKAEKELSDQIQRALQLEEERKRAQEEA ERLEAERMAALRSKEELEKQAVDQIKSQEQLAAELAEYTAKIALLEEARRRKEDEVEE WQHRAREAQDDLVKTKEELHLVMTAPPPPPPAYEPVGYHVQDNLQDEGTENSGYSAEL SSEGILDDRNEEKRITEAEKNERVQRQLMTLSNELSQARDENKRTHNDIIHNENMRQG RDKYKTLRQIRQGNTKQRIDEFEAM" assembly_gap 4203387..4203420 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4231160..4231227 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4241925..>4242182) /locus_tag="PAL_GLEAN10013202" mRNA complement(<4241925..>4242182) /locus_tag="PAL_GLEAN10013202" /product="hypothetical protein" CDS complement(4241925..4242182) /locus_tag="PAL_GLEAN10013202" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09946.1" /translation="MTGVLVAVGGSASQGGQEGTPGGGDRAEQCAERRGLHWVKEEAG NGLCRRPVWRESRMKFLMETSYAAFLADRDQAFGGSPQGEA" assembly_gap 4245982..4247043 /estimated_length=1062 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4251246..4251274 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4278527..4278577 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4290382..4291664 /estimated_length=1283 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4325050..4328949 /estimated_length=3900 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4358506..>4377515) /locus_tag="PAL_GLEAN10013203" mRNA complement(join(<4358506..4358849,4359258..4359344, 4360918..4361080,4362652..4362855,4363852..4363997, 4365393..4365534,4374422..4374509,4377436..>4377515)) /locus_tag="PAL_GLEAN10013203" /product="Radial spoke head protein 3 like protein" CDS complement(join(4358506..4358849,4359258..4359344, 4360918..4361080,4362652..4362855,4363852..4363997, 4365393..4365534,4374422..4374509,4377436..4377515)) /locus_tag="PAL_GLEAN10013203" /codon_start=1 /product="Radial spoke head protein 3 like protein" /protein_id="ELK09947.1" /db_xref="InterPro:IPR009290" /db_xref="UniProtKB/Swiss-Prot:A8E4N3" /translation="MGTYTYTSRPRALTCQRRRYRDGLIQPAEEPMPYGNIMYDRRVI RGNTYALQTVPLHGQPDSIEIQRQQQAQKRALARKRNREQLRPRTPEPVEGRKHVDVQ TELYLEEIADRIIEVDMECQTDAFLDRPPTPLFIPAKTGKDVATQILEGELFDFDLEV KPMLEVLVGKTIEQSLLEVMEEEELANLRASQYAYEELRNAELAEIQRLEEQERRHRE EKERRKQQQWDVIHKHNETSQKIAARAFAQRYLADLLPSVFDSLRDGGYFFDPIERDI EIGFLPWLMNEVDKTMEHSMVGRIVLDMLIRDVVDRRLRMYERKEDKQQSEQLETGPG GTETARGSLAEAEFQDQSASQSQRPLPDRHSLPRSPNEGRYTEKMSSREKELMEEEEE EEEEEEEEAGSREMRKSLGKEELLQ" assembly_gap 4377688..4379991 /estimated_length=2304 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4380768..4382214 /estimated_length=1447 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4387940..>4388419 /locus_tag="PAL_GLEAN10013204" mRNA <4387940..>4388419 /locus_tag="PAL_GLEAN10013204" /product="Ubiquitin-conjugating enzyme E2 S" CDS 4387940..4388419 /locus_tag="PAL_GLEAN10013204" /note="GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_process: GO:0043687 - post-translational protein modification [Evidence IEA]" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 S" /protein_id="ELK09948.1" /db_xref="InterPro:IPR000608" /db_xref="InterPro:IPR016135" /db_xref="UniProtKB/Swiss-Prot:Q1RML1" /translation="MASRSFDLSNRQVTIEGPKGTVYAGGLSRMKLLLGKDFPAPPAK GDLLTEIFHPNVGASGEICANALKRDWAAELGIRHVLLTIKCPLMHPNREPALDEEAG RLLLQGHEEDAAASTDPVALGGPGGAEGPVARKHAVERDKKLVAKKKTDQKRPLRRL" assembly_gap 4429136..4429607 /estimated_length=472 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4432099..4432159 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4449297..4449402 /estimated_length=106 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4461118..4461255 /estimated_length=138 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4471237..4471263 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4473545..4473562 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4491388..4493931 /estimated_length=2544 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4514143..4514166 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4518852..4519853 /estimated_length=1002 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4524427..4527657 /estimated_length=3231 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4541889..4541898 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4543153..4543874 /estimated_length=722 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4555563..4555611 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4556108..>4615531 /locus_tag="PAL_GLEAN10013207" mRNA join(<4556108..4556350,4558149..4558242,4563102..4563308, 4567870..4567968,4569833..4569950,4571736..4571923, 4572639..4572746,4575413..4575601,4577187..4579616, 4582067..4582167,4584108..4584219,4585168..4585620, 4592211..4592279,4593931..4594074,4596266..4596496, 4601139..4601247,4606027..4606106,4610026..4610055, 4610811..4610972,4612339..4612461,4615416..>4615531) /locus_tag="PAL_GLEAN10013207" /product="Fibronectin type III domain-containing protein 1" CDS join(4556108..4556350,4558149..4558242,4563102..4563308, 4567870..4567968,4569833..4569950,4571736..4571923, 4572639..4572746,4575413..4575601,4577187..4579616, 4582067..4582167,4584108..4584219,4585168..4585620, 4592211..4592279,4593931..4594074,4596266..4596496, 4601139..4601247,4606027..4606106,4610026..4610055, 4610811..4610972,4612339..4612461,4615416..4615531) /locus_tag="PAL_GLEAN10013207" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Fibronectin type III domain-containing protein 1" /protein_id="ELK09949.1" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR008957" /db_xref="UniProtKB/Swiss-Prot:Q4ZHG4" /translation="MWPFAATRNLSPVGGIDGIEWFSQIFIAVLRSDILDDTLKLPTY RWVSGLLQLEFAELGPCLESVKNKVHWPHPMGSVFLVDRENVLLAETRPEKQQPRPPL GLAQSDCYLLEKEVPNKPLRVRVRPSDDRLSVAWKAPRLSGAKSPRRSRGFLLGYGES GRKMNYVPLTRDERTHEIKKLASESVYVVSLQSLNSRGRSQPVYRAALTKRKVSEEDE LDLPEDINVRVMSSQSVLVAWLDPVLEKQKKAVASRQYTVRYREKGELARWDYKQISH RRVLIENLIPDTMYEFAVRISQGERDGKWSTSVFQRTPESAPTTAPENLNVWPVNGKT TAVTVAWDALPETEGKVKEYILSYAPALKPFGAKSLTYPGETTSALVDGLQPGERYLF KIRASNRRGMGPHSKAFIVAMPASRNVKNLLDLKNKIPGHGGVPRKPQLHPKTEGLEL QSTELTDQEELDSQGDPPTMPSETQDQKRQQRPPSRSVHPVLASGRTAVRVRTSALPR KEGVDKSGSWLPSQPRLGAPSWASVSSAPQTPTEGSPHRPANLPSSSADNDSLDQEAE EPATGSLHAKDTTPEHLRPKSAAHARPAVWPRRQAASGALRDRSSVHQGSKAALPARR APHSEVGEENSSASAPPLRLSPPHGETLRLLPTEPHPRAPLSRGWKEGHHVPAAKANA PSHPTKSSSVSSRLAPRTQASERADTSDGDGDDDAEDEERRAKATAPTLRARLPAGPP VSGHFRNKPFAAHGRYPNRLGSGRGPRIQLSSSAPSTASPRVPSRGNSQPASDLRRGA GIHGEEMEAEDEEPLPPTVGNHHVPSSSSAQSASRGVDPLKRGPQKGTGLPRKEFLAE NPKSTETWAGTHPQDKALPSKAQDVQQSTHAAVEGDSPKRLVSSARPHMARSQHHPGA SAPKRKYGHPQAGRPHPASQESASFSDPDASRGGQSPNPASSRGVPPTSPQNQNEYSK SRYGGSHDDSTETEARGVRAPSHSAQTKDATPSLPKHRQVEAPAGSAGDSRLRRPPGS SLRPARPYAHTRTRVPGRAGPQVVGRKDGASQATPSKREPLTAKSQQSVSAEEEEEDA GFLKGGKDEDPLSPSVSKWPSSVPGGSKHAEETEPATVPVPPRAGAPQAENSTPAPVR RPPPPGSSGRASHLPPRQPPRSSATPRPPGGTPAWPQAATHAPRVPVSTTPMLSLRQR MMISRFRNPFSRQPVRPSFRQGYNGRPSAEGKVLPGSNGKPSAQRIINGPQGTKWVVD LGRGLVLNAEGRYLQDSHGNPLRVKLGGDGQTIVDLGGTPVVSPDGLPLFGQGRHGKP LASAQDKPILSLGGKPLVGLEVIKTTTRAPTTTQRPATTPRRSLTTARPLTTTRRTTS TLRPTTTTLRPTTTTLRPTTTVRTTTQTTTTPEPTTAIPTCPPGTLERHDEAGNLIMG SSGLPECHPEEDDFSGSETDVTTPTEEPYVVYDEDYESETSRPPATIKTTTAAAIPAV ITPESTISSFPEEEFDLAGKKRFVAPHVTYLSKDPSAPCSLTDALDHFQVDSLDEIIP SDMRKSDLPPQHAPRNITVVAMEGCHSFVIVDWDKASPGDVVTGYLVYSASYEDFIRN KWSTQASAVTHLPIENLKPNTRYYFKVQAKNPHGYGPISPSVSFITESDNPLLVVRPP GGEPIWIPFAFKHDPGYTDCHGRQYVKRTWYKKFVGVVLCNSLRYKIYLSDNLKDTFY NIGDSWGRGEDHCQFVDSHLDGRTGPQSYIEALPNIQGYYRQYRQEPVSFGSIGFGTP YYYVGWYECGVSIPGKW" assembly_gap 4558856..4559345 /estimated_length=490 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4577048..4577114 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4580695..4580946 /estimated_length=252 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4585666..4587120 /estimated_length=1455 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4595126..4595898 /estimated_length=773 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4632577..4632637 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4665472..4665505 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4666151..4666168 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4697609..4697668 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4722893..4722920 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4733470..4733524 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4742132..4742171 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4758449..4758472 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4775183..4775232 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4778378..>4882896) /locus_tag="PAL_GLEAN10013210" mRNA complement(join(<4778378..4778697,4781266..4781368, 4874912..4875024,4876685..4876864,4877455..4877571, 4882306..4882508,4882874..>4882896)) /locus_tag="PAL_GLEAN10013210" /product="Superoxide dismutase [Mn], mitochondrial" CDS complement(join(4778378..4778697,4781266..4781368, 4874912..4875024,4876685..4876864,4877455..4877571, 4882306..4882508,4882874..4882896)) /locus_tag="PAL_GLEAN10013210" /note="GO_function: GO:0004784 - superoxide dismutase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]" /codon_start=1 /product="Superoxide dismutase [Mn], mitochondrial" /protein_id="ELK09950.1" /db_xref="InterPro:IPR001189" /db_xref="InterPro:IPR019831" /db_xref="InterPro:IPR019832" /db_xref="UniProtKB/Swiss-Prot:P41976" /translation="MLSRAACSTSRKLATALGSLSSRQKYTLPDLPYDYGALEPHINA QIMELHYTKHHAAYVNNLNATENKYLEALEKGDLSTQIALQPALKFNGGGHINHTIFW TNLSPNGGGEPKGELLEVIKRDFGSFAKFKEKLTTVSAGVQGSGWGWLGFNKEQGRLQ IAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWDNKHPEAS ANWPVTSFPPRGKHKFGIQPNPPERRDTAPRPHSAASPSPDGRTLHSFLVDDKEMEPA GHVLWGVATSYMWITRLRMQRFVNQPQPVEPATSKSDASCQELKPEQGFSRGGKTTLP EETVSISVCLGRQILTML" assembly_gap 4778833..4778884 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4784231..4784276 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4790911..4792056 /estimated_length=1146 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4806410..4806823 /estimated_length=414 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4808923..4808956 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4809352..4809405 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4826934..4827394 /estimated_length=461 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4834362..4834371 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4847077..4847096 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4872074..4874057 /estimated_length=1984 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4879337..4880001 /estimated_length=665 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4882597..4882607 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4897940..4897955 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4901145..4901158 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4902348..4903184 /estimated_length=837 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4909218..>4925041 /locus_tag="PAL_GLEAN10013211" mRNA join(<4909218..4909247,4911356..4911411,4913821..4913879, 4914952..4915079,4918173..4918351,4923054..4923208, 4924458..>4925041) /locus_tag="PAL_GLEAN10013211" /product="Pre-mRNA-splicing regulator WTAP" CDS join(4909218..4909247,4911356..4911411,4913821..4913879, 4914952..4915079,4918173..4918351,4923054..4923208, 4924458..4925041) /locus_tag="PAL_GLEAN10013211" /codon_start=1 /product="Pre-mRNA-splicing regulator WTAP" /protein_id="ELK09951.1" /db_xref="UniProtKB/Swiss-Prot:Q15007" /translation="MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKY TDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQ PSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAK CRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGM QSTILVLQQQLKETRQQLAQYQQQQSQAPAPSTSRTTSSEPVGQAEAAGKDCSRLANG PSNGSSSRQRTSGSGFHREGDTTEDDFPPSPGNGNKASNSSEERTGRGGGSYVNQLSA GYESVDSPTGSENSLTHHSNDTDSNHDPQEENSVSGKGNRTAGSRHVQNGLDSSVNVQ GSVL" assembly_gap 4931472..4931879 /estimated_length=408 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4932001..>4945135 /locus_tag="PAL_GLEAN10013212" mRNA join(<4932001..4932055,4932718..4932852,4935595..4935776, 4937076..4937193,4942052..4942195,4943059..4943181, 4943778..4943932,4944454..4944564,4944965..>4945135) /locus_tag="PAL_GLEAN10013212" /product="Acetyl-CoA acetyltransferase, cytosolic" CDS join(4932001..4932055,4932718..4932852,4935595..4935776, 4937076..4937193,4942052..4942195,4943059..4943181, 4943778..4943932,4944454..4944564,4944965..4945135) /locus_tag="PAL_GLEAN10013212" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="Acetyl-CoA acetyltransferase, cytosolic" /protein_id="ELK09952.1" /db_xref="InterPro:IPR016039" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="UniProtKB/Swiss-Prot:Q9BWD1" /translation="MSAGSDSVVIVSAARTVIGSFNGALSTVPVYDLGSAVIKEVLKR AAVAPKDVSEVIFGHVLAAGCGQNPARQASMGAGIPYSVPAWSCQMVCGSGLKAVCLA AQSIMVGDSSIVVAGGMENMSKAPHLAYLRAGVRIGETPLTDSILHDGLTDAFLNYHM GITAENVAKKWQVSREDQDKFALLSQNRTESAQKAGHFDKEIVPVFVSSRKGLTEVKT DEFPHHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADNRGLTP LGQIVSWSQVGVEPSIMGIGPIPAIKQAVAKAGWSLEDVDVFEINEAFAALSVAIVKE LGLDPEKVNIQGGAIALGHPLGASGCRILVTLLHTLERKGGRRGVAALCIGGGMGIAM CVQRE" gene complement(<4945363..>4954147) /locus_tag="PAL_GLEAN10013213" mRNA complement(join(<4945363..4945579,4945955..4946118, 4946281..4946473,4946776..4946899,4947238..4947413, 4950063..4950189,4950480..4950661,4950965..4951075, 4951465..4951562,4952622..4952750,4952944..4953029, 4954084..>4954147)) /locus_tag="PAL_GLEAN10013213" /product="T-complex protein 1 subunit alpha" CDS complement(join(4945363..4945579,4945955..4946118, 4946281..4946473,4946776..4946899,4947238..4947413, 4950063..4950189,4950480..4950661,4950965..4951075, 4951465..4951562,4952622..4952750,4952944..4953029, 4954084..4954147)) /locus_tag="PAL_GLEAN10013213" /note="GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]" /codon_start=1 /product="T-complex protein 1 subunit alpha" /protein_id="ELK09953.1" /db_xref="InterPro:IPR002423" /db_xref="InterPro:IPR017998" /db_xref="UniProtKB/Swiss-Prot:Q32L40" /translation="MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKM LVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLK NADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDDLGRDCLINAAKTSMSSKV IGINGDFFANMVVDAVLAIKYTDVRGQPRYPVSSINILKAHGRSQMESLLINGYALNC VVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQ KILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANL EGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSL HDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPN TLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTL VKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGGYEDAVHSGALDD" gene <4955422..>4959852 /locus_tag="PAL_GLEAN10013214" mRNA join(<4955422..4955473,4955758..4955944,4959028..4959259, 4959781..>4959852) /locus_tag="PAL_GLEAN10013214" /product="39S ribosomal protein L18, mitochondrial" CDS join(4955422..4955473,4955758..4955944,4959028..4959259, 4959781..4959852) /locus_tag="PAL_GLEAN10013214" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]" /codon_start=1 /product="39S ribosomal protein L18, mitochondrial" /protein_id="ELK09954.1" /db_xref="InterPro:IPR005484" /db_xref="UniProtKB/Swiss-Prot:Q3ZBR7" /translation="MALRSRCRELLSICRNPGCGVAVFSTSSKPEVKPEVDPLENEAI APEFINRNPRNLELLALARKERGWGTVWPSREFWHRLRVVRTQHHIEAVVEHRNGQVV VSASTREWAIKKYLYSTRNVVACESIGRVLAGRCLEAGINFMVYQPTPWEAASDSMQR LRNAMTEGGVVLQEPRRIYE" gene <4961694..>4982945 /locus_tag="PAL_GLEAN10013215" mRNA join(<4961694..4961769,4962225..4962282,4964735..4964858, 4965040..4965128,4966417..4966517,4967987..4968063, 4968250..4968393,4968911..4968980,4970401..4970486, 4973278..4973333,4974626..4974725,4975033..4975208, 4975322..4975420,4982861..>4982945) /locus_tag="PAL_GLEAN10013215" /product="Poly(A)-specific ribonuclease PARN-like domain-containing protein 1" CDS join(4961694..4961769,4962225..4962282,4964735..4964858, 4965040..4965128,4966417..4966517,4967987..4968063, 4968250..4968393,4968911..4968980,4970401..4970486, 4973278..4973333,4974626..4974725,4975033..4975208, 4975322..4975420,4982861..4982945) /locus_tag="PAL_GLEAN10013215" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]" /codon_start=1 /product="Poly(A)-specific ribonuclease PARN-like domain-containing protein 1" /protein_id="ELK09955.1" /db_xref="InterPro:IPR006941" /db_xref="InterPro:IPR012337" /db_xref="UniProtKB/Swiss-Prot:Q5R6R6" /translation="MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSHPEQI RYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK IKQNILTGNWKVRSSLDKDQIKVVINEVTRWLDLAEEGDWMTLPGIAGFQAFEVQLVL RQALPDIWTVLRDQGVIVKKVSKQHRWYLENTSCDRESCWKEKILLSARGFSVFFQML VKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPVLIDTKNVTKDIWKP FFAVLLKVAHLLLWRVHSAGSIPEPSFPLYLDVLAPYVNQVNLIRAGVPKINFSGPDH PSTRPPILILSVRKWPGVTEQQVYREFQNLCKFDVRRLTRSQFLLLTNKFKDARSILK EYRCHPTLQVSLYRYWRHSPNINCVLQHRHKNCRESLLTGLGTSGWDWRQLDAE" assembly_gap 4962144..4962160 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4985243..4985279 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4986300..4986589 /estimated_length=290 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5000765..5000804 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5001370..>5002347 /locus_tag="PAL_GLEAN10013217" mRNA <5001370..>5002347 /locus_tag="PAL_GLEAN10013217" /product="MAS proto-oncogene" CDS 5001370..5002347 /locus_tag="PAL_GLEAN10013217" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]" /codon_start=1 /product="MAS proto-oncogene" /protein_id="ELK09956.1" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR000820" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/Swiss-Prot:P12526" /translation="MDESNMTSFVVEQSANASSDRNASVGDPHQKIPVVHWVIMSLSP LGFVENGILLWFLCFRMRRNPFTVYITHLSIADISLLFCIFILTVDYALDYELSSGYY YTIVTLSVTFLFGYNTGLYLLTAISVERCLSVLYPIWYRCHRPKHQSAFVCALLWALS CLVTSMEYVMCIDSEGQSHSRSDCRAVIIFIAVLSFLVFTPLMVVSSTVLVVKIRKNA WASHSSKLYMVITVTIVIFLIFAMPMRLLYLMYYEHWSASGNFHHISLLFSTINSSAN PCIYFFVGSSRKKRFKESLKVVLTRAFKDEMQPRRQEDSGNATAIETVV" assembly_gap 5015085..5015109 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5015620..5015665 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5038113..5038196 /estimated_length=84 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5045568..5045673 /estimated_length=106 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5052551..5052993 /estimated_length=443 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5055979..>5150640 /locus_tag="PAL_GLEAN10013219" mRNA join(<5055979..5056094,5071809..5071948,5081189..5081313, 5082867..5082965,5086942..5087074,5089633..5089762, 5091448..5091553,5094087..5094249,5094416..5094581, 5095358..5095461,5100469..5100633,5103143..5103283, 5104299..5104442,5105536..5105673,5106288..5106507, 5106931..5107108,5107755..5107870,5108339..5108507, 5109710..5109889,5112026..5112127,5113410..5113511, 5115369..5115564,5118313..5118483,5119088..5119128, 5119347..5119520,5121293..5121380,5122002..5122217, 5122936..5123066,5123321..5123418,5128491..5128627, 5129685..5129875,5131326..5131452,5132115..5132234, 5132570..5132826,5133132..5133350,5134861..5135010, 5138306..5138467,5139635..5139842,5140206..5140352, 5141582..5141816,5142553..5142689,5143085..5143199, 5144094..5144240,5144847..5145034,5146272..5146458, 5148201..5148350,5149399..5149468,5150224..>5150640) /locus_tag="PAL_GLEAN10013219" /product="Cation-independent mannose-6-phosphate receptor" CDS join(5055979..5056094,5071809..5071948,5081189..5081313, 5082867..5082965,5086942..5087074,5089633..5089762, 5091448..5091553,5094087..5094249,5094416..5094581, 5095358..5095461,5100469..5100633,5103143..5103283, 5104299..5104442,5105536..5105673,5106288..5106507, 5106931..5107108,5107755..5107870,5108339..5108507, 5109710..5109889,5112026..5112127,5113410..5113511, 5115369..5115564,5118313..5118483,5119088..5119128, 5119347..5119520,5121293..5121380,5122002..5122217, 5122936..5123066,5123321..5123418,5128491..5128627, 5129685..5129875,5131326..5131452,5132115..5132234, 5132570..5132826,5133132..5133350,5134861..5135010, 5138306..5138467,5139635..5139842,5140206..5140352, 5141582..5141816,5142553..5142689,5143085..5143199, 5144094..5144240,5144847..5145034,5146272..5146458, 5148201..5148350,5149399..5149468,5150224..5150640) /locus_tag="PAL_GLEAN10013219" /note="GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]" /codon_start=1 /product="Cation-independent mannose-6-phosphate receptor" /protein_id="ELK09957.1" /db_xref="InterPro:IPR000479" /db_xref="InterPro:IPR000562" /db_xref="InterPro:IPR009011" /db_xref="InterPro:IPR013806" /db_xref="UniProtKB/Swiss-Prot:P11717" /translation="MYTGPEAKEVKGMSEGQWGRTSGGERTVGRGQATQSHQNYTWEA FDTNNHVLYKISVCGNVDVAQCGASSAVCMHDLKTNSYRSVGDSLLKSATRTVLEFNT TVNCDLKQRTNRVQSSITFLCGKTLGTPEFIATADCVHYFEWRTTAACKKDTFKANKE VPCYAFDGEFRKHDLNPLIKLSGAYLVDDSDPDTTLFINVCRDIDSLRGSDPQLRACP AGTAACLVRGDQAFDVGQPKGGLKFVGKDRLVLTYVKEEAGKPDFCDGHSPAVTVTFV CPSERREGTVPKLTASSNCRYEVEWVTEYACHRDYLESSTCSLSSEQHDIAIDLKPLS LDGARHYTSDTKEYTFYLNICGEIEAKVCHEKQAAVCQVKKTDSTQVKVAGRFQNQTL RYSDGDLTLIYFGGEECSSGFQRMTVINFECSETAGDGGRGAPVFTGEVDCTYFFTWD TKYACVKEKESLLCSVTDGKRRYDLSALARHAEPEQNWEAVDGSQKEKEKKHFFINIC HRVLQEGQARGCPEDAAACSVDKSGSKNLGKFIASPTKEKGNIQLSYSDGDTCGDEKK ITTNITLVCKPGDLESAPVLRTSRDDGCFYEFEWHTAAACVLSRTEGDNCTVFDSQAG FSFDLSPLTKKDGSYKVETEKYDFYINVCAAVSGSFCQPGSGACQVAKRQVALPSYGC SFRSLVLTGDLFGNRDKKSWNLGLSNAKLSYYDGMIQLNYKDGTPYNNEKHTPRATLI TFLCDRDAGVGVPEYQEEDDSAYNFRWYTSYACPEEPLECMVTDPSTMEQYDLSRLAV SEGSRGENWYAMDSAGEHNAWRKYYINVCRPLSPVPGCDRYAAACQMKYVKDQGSFSE VVSISNLGVARTGPTVEGSGSLLLEYVNGSACTTSYGRRTTYTTRIHLVCSRGSLNTH PIFSLIWECVVTFLWNTEAACPVLITTDTDEACSIRDPNSGFVFDLNPLNSSQGYQVF SIGKTFVFNVCGTMPICGTLNGKPASGCEGETETGDLKTLKPERLVGLEKTLQLSTEG FITLTYEGLHSTTKGARDAFIIRFVCNDDLYPGTAKFLHQDIDSGLGIRNTFFEIETA LACVPSPVDCQVTDPAGNEYDLSGLSKSAVGSCLVSEDNSQNLGVVQISPQAAANGSL SIVYVNGGKCGNQRYSTRITLECAHTAGSPMFQLLDGCEYVFLWRTVEACPVVRAEGD NCEVKDPRHGNLYDLKPLGLNDTVVRSGEYTYYFRVCGKLSSDVCSTDDKSKVISSCQ EKQGPQGFQRVAGLFTQKLTYENGLLKMNYTGGDTCHKVYQRSTTVFFYCDRSTQKPV FLKETSDCSYLFEWRTQYACPPFNLTECSFKDEAGNNYDLSSLSRYSDNWEAVTGTGS TEHYLINVCKSLSPHPGSEPCSPEAAVCLLGGSKPVNLGRVRDSPQWVDGVAVLKYVD GDSCPDQIRKKSTTIRLTCSENQVNSRPMFISAVEDCEYTFTWPTSAACPVRRMEHGD CQVTNPATGHLFDLNSLSGKSGTTAAYSEKGLVFISVCGENENCAPGVGACFGQTRIS VGKASTRLTYVDQVLQLVYEEGSPCPSKSGLKYKSVISFVCRPEAGPTNRPMLISLDK QTCTLFFSWHTPLACEQVMECSVRNGSSIIDLSPLIHRTGGYEAYDESEDDASDTNPD FYINICQPLNPMHGVACPAGAAVCKVPVNGPPIDIGRVTGPPILNSVANEVYLNFESS TPCLADKHFNYTSLITFHCKRGVSMGTPELLRTSDCDFVFEWETPLVCPDEVKEDGCS LTDEQLLYSFNLSSLSKNTFKVTHDSRTYSVGVCTAAAGLDEGGCKDGGVCLLSQTKG ASFGRLASMRLDYRHQDEAVILSYANGDLCPPETEYGEPCVFPFTFRGKSYEECVVES RARLWCATTADYDRDHEWGFCRHSNSHRTSSIIFKCDEEADIGGPRVFSETRGCEVTF EWKTKVVCPPEKMECKFVQNHRTYDLRLLSSLTGSWFFAHQGASYYINLCQKIYKGPL DCSDRASICKKSASGDVQVLGLVHTQRLDVIDDKVIVTYSKGDPCGENRTTSTVIELT CAKTVGRPSFKRFDVDSCTYYFSWDSRAACAVKPQEVQMVNGTITSPINGKSISLGDI YFKLFSASGDIRTNGDKYLYEIQLSSITNSKYPACTGANICQVKPNDQHFSRKVGTSD KTKYYVQDGDLDVVFTSSSKCGKDKTKSVSSTIFFHCDPLVKDGIPEFSHETADCQYL FSWYTSAVCPLGDFDGASAEEDTPEHKGLSERSQAVGAVLSLLLVALTGCLLTLLLYK KERRETVMSKLTNCCRRSADVSYKYSKVNKEEEADENETEWLMEEIQLPAPRPGKEGQ ENGHITTKSVKADALTSLHGDDQDSEDEVLTIPEVRVHSARGTGADSAQQMRHPQRKV LREPGADRVGLVRGEKGARPTPRPVPPKPVNSGGLVSFHDDSDEDLLNI" assembly_gap 5076921..5078193 /estimated_length=1273 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5084330..5084358 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5086063..5086082 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5119300..5119336 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5140384..5140544 /estimated_length=161 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5151705..5151736 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5157811..>5184646 /locus_tag="PAL_GLEAN10013222" mRNA join(<5157811..5158029,5163257..5163360,5165160..5165314, 5166188..5166356,5167556..5167670,5167888..5167994, 5170495..5170709,5174230..5174338,5181175..5181287, 5182339..5182438,5184544..>5184646) /locus_tag="PAL_GLEAN10013222" /product="Solute carrier family 22 member 1" CDS join(5157811..5158029,5163257..5163360,5165160..5165314, 5166188..5166356,5167556..5167670,5167888..5167994, 5170495..5170709,5174230..5174338,5181175..5181287, 5182339..5182438,5184544..5184646) /locus_tag="PAL_GLEAN10013222" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]" /codon_start=1 /product="Solute carrier family 22 member 1" /protein_id="ELK09958.1" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR016196" /db_xref="InterPro:IPR020846" /db_xref="UniProtKB/Swiss-Prot:A7MBE0" /translation="MSTTDDILQQIGEFGLFQKLVFLPLCLLSALFAPVYVGIVFLAF TPDHRCLSPGVAELSQRCGWSLAEELNLTFDLVCENSWRVDLFQSCVNAGFFISFLGV GYVADRFGRKLCLLATTLISIVFGILMAIVPDYTSLLLFRLLQGLVSKGSWAAGLTMI TEFVGLGYRRTVVILYQTAFSVGLVLLCGVAYALPHWRRLQLAMSLPTLLLLLCFWYV PESPRWLLSQKKNTQAVKILDRIAQKNGKPTPADLKMLSLKEDATEKLSPSFADLFRT PQLRKHTFILMYLWFTSSVLYQGLIMHLGATGGDLYLDFLFSALMEFPAAFVILVTVD RVGRLYPMAASNLVAGAACLAMIFIPHDLYWLSTAVACLGRMGITIAFQMVCLVNTEL YPTFIRNLGVMVCSSMCDLSGIVTPFLVFRLIEFWQGLPLILFVALSLVAGGVTLLLP ETKGVALPETIEDVEKLQRKAKPKENTIYLQVQTSELQGLGRDISLGTKGQR" assembly_gap 5158052..5158223 /estimated_length=172 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5222566..5222713 /estimated_length=148 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5227042..5227076 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5227439..5227478 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5230314..5230360 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5267463..5268398 /estimated_length=936 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5270397..5270675 /estimated_length=279 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5301008..>5517491 /locus_tag="PAL_GLEAN10013224" mRNA join(<5301008..5301184,5307918..5308021,5311189..5311343, 5312871..5313039,5313907..5314024,5336990..5337087, 5337207..5337421,5347320..5347419,5459544..5459734, 5468097..5469460,5476885..5477127,5479421..5479567, 5484619..5484776,5487935..5488048,5489502..5489601, 5489706..5489789,5490856..5491122,5492407..5492556, 5494702..5494863,5495357..5495490,5496089..5496167, 5498359..5498425,5501383..5501479,5502285..5502416, 5505639..5505739,5506403..5506483,5509362..5509553, 5510655..5510725,5511727..5511843,5513016..5513175, 5514843..5514965,5515558..5515664,5517183..>5517491) /locus_tag="PAL_GLEAN10013224" /product="Mitogen-activated protein kinase kinase kinase 4" CDS join(5301008..5301184,5307918..5308021,5311189..5311343, 5312871..5313039,5313907..5314024,5336990..5337087, 5337207..5337421,5347320..5347419,5459544..5459734, 5468097..5469460,5476885..5477127,5479421..5479567, 5484619..5484776,5487935..5488048,5489502..5489601, 5489706..5489789,5490856..5491122,5492407..5492556, 5494702..5494863,5495357..5495490,5496089..5496167, 5498359..5498425,5501383..5501479,5502285..5502416, 5505639..5505739,5506403..5506483,5509362..5509553, 5510655..5510725,5511727..5511843,5513016..5513175, 5514843..5514965,5515558..5515664,5517183..5517491) /locus_tag="PAL_GLEAN10013224" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]" /codon_start=1 /product="Mitogen-activated protein kinase kinase kinase 4" /protein_id="ELK09959.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR016196" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:Q9Y6R4" /translation="MPTLRASPRPWCELSAPQNSPPPVGQSVPWGSSSPSRLVARSPL LGKPGQLRAQPGPEQFDLVCVNAWMLDLTQAILNLGFLAGAFTLGYAADRYGRIVIYL ISCFGVGVTGVVVAFAPNFPVFVVFRFLQGVFGKGTWMTSYVIVTEIVGSKQRRIVGI VIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPNFLFLLYYWVVPESPRWLITRKEGD KALKILRSVAKCNGKYLSPSYSEITVTDEEVSNPSFLDLVRTPQMRKCTLILMFAWFT SAVVYQGLVMRLGIVGGNLYIDFFISGVVELPGALLILLTIDRFGRRLPFAASNVVAG VACLVTAFLPEGVLASVCGGLVMLLPETKGITLPETVDDVEKLGRQECALRDSACRIS ESDPEDFSDETNAENLYGASPPSTPRQMKRMSAKHQRNNIGRPASRTNLKEKMNASSQ PANRDGGRPAESVEEYSYKQEKKVRAALRTTERDHKKNVQCSFMLDSVGGSLPKKPIP DVDLNKPYLSLGCSNAKLPVSVPVPIARTARQTSRTDCPADRLKFFETLRLLLKLTSV SKKKDREQRGQENTSAFWFNRSNELIWLELQAWHAGRTINDQDLFLYTARQAIPDIIN EILTFKVNYGSFAFVRNGASFNGTSVEGQCRAPHGTRIVGYSTYHEHLQRQRVSFEQV KRIMELLEYIEALYPSLQALQKDYERYAAKDFQDRVQALCLWLNITKDLNQKLRIMGT VLGIKNLSDIGWPVFEIPSPRSSKGNEPEDEGEDMEGELKELESSTEESEEEQTSDPG APETTQPTDSSFGSQPQACRSKKLERLGSEDDSVGWGTPDGSTEAGFSRHCLTSIYRP FVDKALKQMGLRKLILRLHKLMDGSLQRARIALVKSDRPVEFSEVPDPMWGSDYVQLS RTPPSSEQKCSTVSWNELKAMDLPSFEPAFLVLCRVLLNVIHECLKLRLEQRPAGEPS LLSIKQLVRECKEVLKGGLLMKQYYQFMLLGLPHGPGAAGCNMDAFEEDLHKMLMVYF DYMRSWIQMLQQLPQASHSLKNLLEEEWNFTKEITHYIRGGEAQAGKLFCDIAGMLLK STGSFLESGLQERCAELWASADDSASDEIRRSVIEISRALKELFHEARERASKALGFA KMLRKDLEIAAEFILSAPVRDLLEVLKSKQYVKVQIPGLENLQVFVPDFLAEEKTVIL QLLNAAAGKDCSKDSDDVLMDAYLLLTKHSDRARDLDDSWATWEAPPVKIVPQVETVD TLRSMQVDNLLLVVTQSAHLIIQRKAFQQSIEGLMTLRQEQTSSQPVIAKALQQLKND ALELCNRISDAIDRVDHIFTSEFDAEVDESESVTLQQYYREAMIQGYNFGFEYHKEVV RLMSGEFRQKIGDKYISFARKWMNYVLTKCESGRGTRPRWATQGFDFLQAIEPVFISA LPEDDFLSLQALMNECIGHVIGKPHSPVTAIHRNSPRPVKVPRCHSDPPNPHLIIPTP EGFSTRSHSSPAASAASAAAAAAASGRPGPSGSDPAPPKLISSAHDARGSSVPENDRL ASIAAELQFRSLSRHSSPTEERDEPAYPKGDSSGSARRSWELRTLISQTKDTASKQGP IEAIQKSVRLFEEKRYREMRRKNIIGQVCDTPKSYDNVMHVGLRKVTFKWQRGNKIGE GQYGKVYTCISVDTGELMAMKEIRFQPNDHKTIKETADELKIFEGIKHPNLVRYFGVE LHREEMYIFMEYCDEGTLEEVSRLGLQEHVIRLYSKQIAIAINVLHEHGIVHRDIKGA NIFLTSSGLIKLGDFGCSVKLKNNAQTMPGEVNSTLGTAAYMAPEVITRAKGEGHGRA ADIWSLGCVVIEMVTGKRPWHEYEHNFQIMYKVGMGHKPPIPERLSPEGKDFLCHCLE SEPRMRWTASQLLDHSFVKVWQTAVQSPPRLMLGSCLQLSLKDNGTLKYGMSVSVSEV ERN" assembly_gap 5344642..5344655 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5348012..5348099 /estimated_length=88 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5357973..5358017 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5366221..5366245 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5376979..5376991 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5377976..5378084 /estimated_length=109 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5384247..5384337 /estimated_length=91 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5410241..5411449 /estimated_length=1209 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5419521..5419631 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5431406..5432056 /estimated_length=651 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5436942..5436975 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5447962..5449978 /estimated_length=2017 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5496255..5497607 /estimated_length=1353 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<5526484..>5591502) /locus_tag="PAL_GLEAN10013225" mRNA complement(join(<5526484..5526578,5527901..5528099, 5529719..5529794,5531735..5531837,5533162..5533315, 5534382..5534543,5547026..5547195,5591325..>5591502)) /locus_tag="PAL_GLEAN10013225" /product="1-acyl-sn-glycerol-3-phosphate acyltransferase delta" CDS complement(join(5526484..5526578,5527901..5528099, 5529719..5529794,5531735..5531837,5533162..5533315, 5534382..5534543,5547026..5547195,5591325..5591502)) /locus_tag="PAL_GLEAN10013225" /note="GO_function: GO:0008415 - acyltransferase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase delta" /protein_id="ELK09960.1" /db_xref="InterPro:IPR002123" /db_xref="UniProtKB/Swiss-Prot:Q5E9R2" /translation="MDLAGLLKSQFLCHLVFCYVFIASGLIVNTIQLFTLLLWPINKQ LYRRINCRLSYCISSQLVMLLEWWSGTECVIHTDPQAYPKFGKENAIVVLNHKFEIDF LCGWSLAERFGVLGGSKVLAKKELAYVPIIGWMWYFTEMVFCTRKWEHDRKTVAKGLL RLRDYPEKYFFLIHCEGTRFTEKKHQISMQVAQAKGLPGLKHHLLPRTKGFAITVRGL RDVVSAVYDCTLNFRNNENPTLLGVLNGKKYHADLYVRRIPLEEVPEDGDECAAWLHK LYQEKDALQEEYCRTGTFPGTPMVPPRRPWALLNWLFWASLLLCPFVRFLVSMVSSGS SLTLASFVLVLFVASMGVRWMIGVTEIDKGSAYGDTDSKQKQND" assembly_gap 5530972..5531012 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5584214..5584563 /estimated_length=350 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5585912..5585932 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5624779..5624827 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5625974..5625989 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5629581..5629597 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<5658653..>5691264) /locus_tag="PAL_GLEAN10013226" mRNA complement(join(<5658653..5658765,5665259..5665376, 5691109..>5691264)) /locus_tag="PAL_GLEAN10013226" /product="E3 ubiquitin-protein ligase parkin" CDS complement(join(5658653..5658765,5665259..5665376, 5691109..5691264)) /locus_tag="PAL_GLEAN10013226" /note="GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="E3 ubiquitin-protein ligase parkin" /protein_id="ELK09961.1" /db_xref="InterPro:IPR002867" /db_xref="UniProtKB/Swiss-Prot:O60260" /translation="MRAETSQHPFRYSSSGDCLAELGAPEGMLDFIQNLRITVVITGV LEIALINKAYRVDEKAAEQARWEESSKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQP QCQLEWCWNCGCEWNRSCMGAHWFDV" assembly_gap 5671719..5672539 /estimated_length=821 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5682160..5682192 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5688907..5689016 /estimated_length=110 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5693002..5693074 /estimated_length=73 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5698673..5698697 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5701313..5701367 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5713063..5713576 /estimated_length=514 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5718668..5718894 /estimated_length=227 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5727023..5728126 /estimated_length=1104 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5748133..5749327 /estimated_length=1195 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5760321..5760460 /estimated_length=140 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5760831..5760855 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5782842..5782861 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5794680..5796187 /estimated_length=1508 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5828322..5828750 /estimated_length=429 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5836483..5836539 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5856533..5856652 /estimated_length=120 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5878293..5878918 /estimated_length=626 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5891624..5891989 /estimated_length=366 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5893835..5894042 /estimated_length=208 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5897446..5897460 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5912328..5912347 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5966187..5966398 /estimated_length=212 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5975907..5976139 /estimated_length=233 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5980955..5981029 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6012766..6012809 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6015534..6015585 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6018967..6019089 /estimated_length=123 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6050058..6050106 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6070348..6070399 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6072416..6072601 /estimated_length=186 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6073262..6073284 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6085281..6085329 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6088130..6088183 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6105831..6105889 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6119278..6120822 /estimated_length=1545 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6147363..6147375 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6162134..6162143 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6183806..6183839 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6203807..6204815 /estimated_length=1009 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6206353..6206692 /estimated_length=340 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6224684..6224704 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6231864..6231950 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6239410..6239476 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6240110..6240129 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6292271..6292345 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6298976..6299010 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6317761..6317852 /estimated_length=92 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<6322829..>6359719) /locus_tag="PAL_GLEAN10013230" mRNA complement(join(<6322829..6323025,6359521..>6359719)) /locus_tag="PAL_GLEAN10013230" /product="E3 ubiquitin-protein ligase parkin" CDS complement(join(6322829..6323025,6359521..6359719)) /locus_tag="PAL_GLEAN10013230" /codon_start=1 /product="E3 ubiquitin-protein ligase parkin" /protein_id="ELK09962.1" /db_xref="UniProtKB/Swiss-Prot:O60260" /translation="MKPGGKGQERNTAGNSPRDATGASEREPESLTRVDFSSSVLPTD SVGLAVILTEDREDDAPPAGKPASGVYIASSPGPNKDSIPDARGHICLATPAKTSVAP VSEKRLSSRLCIETCNMLLIIDARQQLCV" assembly_gap 6323553..6323660 /estimated_length=108 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6348478..6348519 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6364924..6365011 /estimated_length=88 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6366470..6366540 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6377080..6378762 /estimated_length=1683 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6383689..6386410 /estimated_length=2722 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6391517..6395857 /estimated_length=4341 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6402501..6402522 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6415340..6415460 /estimated_length=121 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6420269..6420338 /estimated_length=70 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6438951..6438995 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6477336..6477387 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6498469..6498608 /estimated_length=140 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6514114..6514172 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6514900..6514954 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6530053..6530197 /estimated_length=145 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6560162..6565565 /estimated_length=5404 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6603756..6603811 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6608891..6608906 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6613082..6613092 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6658665..6658697 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6666227..6666336 /estimated_length=110 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6690082..6690231 /estimated_length=150 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <6690572..>6830301 /locus_tag="PAL_GLEAN10013236" mRNA join(<6690572..6690727,6753152..6753286,6828392..6828515, 6830144..>6830301) /locus_tag="PAL_GLEAN10013236" /product="Parkin coregulated protein" CDS join(6690572..6690727,6753152..6753286,6828392..6828515, 6830144..6830301) /locus_tag="PAL_GLEAN10013236" /codon_start=1 /product="Parkin coregulated protein" /protein_id="ELK09963.1" /db_xref="InterPro:IPR019399" /db_xref="UniProtKB/Swiss-Prot:Q96M98" /translation="MVAEKETLSLNKCPDKLPKRTKLLAQQPLPGHQPHALVSEGFTV KAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKNISVM GTTPSKWHWSLTCGVTFAWAQAWSRIDCAILAKLHPGCLMNFGSQHSSDSAHKAHVAK ARAAGADAGSSDVQLRDYARNGDQALQKLR" assembly_gap 6714068..6714184 /estimated_length=117 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6736610..6738165 /estimated_length=1556 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6757231..6757263 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6758482..6758497 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6781294..6781545 /estimated_length=252 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6790580..6790620 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6810090..6813302 /estimated_length=3213 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6842417..6842445 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <6848881..>6931270 /locus_tag="PAL_GLEAN10013238" mRNA join(<6848881..6848979,6914721..6914798,6915598..6915769, 6931017..>6931270) /locus_tag="PAL_GLEAN10013238" /product="Parkin coregulated protein" CDS join(6848881..6848979,6914721..6914798,6915598..6915769, 6931017..6931270) /locus_tag="PAL_GLEAN10013238" /codon_start=1 /product="Parkin coregulated protein" /protein_id="ELK09964.1" /db_xref="InterPro:IPR019399" /db_xref="UniProtKB/Swiss-Prot:Q96M98" /translation="MGSVAEWDVAYDGWREGLVLISTLSGHGRISRQVCFIRSPSPVA SFLHDIAIASVTLQAVEIEKLDYHHYLPLFFDGLCEMAFPYEFFARQGIHDMLEHGGN KILPVIPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSADMVGEALVPYYRQILPILN IFKNMNGESSPESECLLSPEKGPWFEAEFISSTFRAYYCR" assembly_gap 6879313..6879327 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6901895..6902119 /estimated_length=225 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6920678..6920692 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6930989..6931007 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6954808..6954834 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6965055..6965416 /estimated_length=362 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6994049..6994316 /estimated_length=268 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6995587..6995598 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7024231..7024516 /estimated_length=286 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7076642..7076696 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7140946..7140996 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7143791..7143833 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7164271..7164287 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <7186763..>7187152 /locus_tag="PAL_GLEAN10013242" mRNA <7186763..>7187152 /locus_tag="PAL_GLEAN10013242" /product="hypothetical protein" CDS 7186763..7187152 /locus_tag="PAL_GLEAN10013242" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09965.1" /translation="MGFHVGATPSVLVSAFGPPHGDYRHGHCTPETPTPSQTSNPPQG ESPVLLQIPWQRWQRRASLSGGPRVLCAPPADGGRGVLVPQRHTRFSTRRERFSGKEE EDGVTCRVDDYSSDSLLQIDPSSSSGR" assembly_gap 7199621..7201436 /estimated_length=1816 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7222861..7222883 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <7235190..>7329037 /locus_tag="PAL_GLEAN10013244" mRNA join(<7235190..7235348,7254394..7254510,7298448..7298595, 7324459..7324542,7325900..7326175,7328958..>7329037) /locus_tag="PAL_GLEAN10013244" /product="Protein quaking" CDS join(<7235190..7235348,7254394..7254510,7298448..7298595, 7324459..7324542,7325900..7326175,7328958..7329037) /locus_tag="PAL_GLEAN10013244" /note="GO_function: GO:0003723 - RNA binding [Evidence IEA]" /codon_start=1 /product="Protein quaking" /protein_id="ELK09966.1" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR018111" /db_xref="UniProtKB/Swiss-Prot:Q5W9D5" /translation="FLFLTEISRVRKDMYNDTLNGSTEKRSAELPDAVGPVVQLQEKL YVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNW EHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAVKGEDSLKKMQLMELAILNG TYRDANIKSPTAQAAPRIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTP HPTAAIVPPGPEAGLIYTPYEYPYTLAPATSILEYPIEPSGVLGAVATKVRRHDMRVH PYQRVVTADRG" assembly_gap 7251623..7251642 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7260736..7260766 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7268179..7270878 /estimated_length=2700 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7331958..7332720 /estimated_length=763 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7345740..7345870 /estimated_length=131 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7352933..7353043 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7362734..7363495 /estimated_length=762 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7375185..7375218 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7377484..7377904 /estimated_length=421 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7380610..7380642 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7387451..7387502 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7393669..7393724 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7396194..7396233 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7398754..7398887 /estimated_length=134 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7399236..7399294 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7401158..7401614 /estimated_length=457 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7435352..7435459 /estimated_length=108 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7492864..7493008 /estimated_length=145 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7514158..7514208 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7547365..7547463 /estimated_length=99 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7552486..7552528 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7556861..7556957 /estimated_length=97 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7562598..7562666 /estimated_length=69 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7632970..7633004 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7645978..7646013 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7655210..7655263 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7680012..7680079 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7690273..7690286 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7693337..7693348 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7698529..7698567 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7699575..7699665 /estimated_length=91 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7704570..7704600 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7705892..7705974 /estimated_length=83 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7721416..7721620 /estimated_length=205 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7726195..7726380 /estimated_length=186 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7750225..7750568 /estimated_length=344 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7786683..7786736 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7810031..7810061 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7814459..7814500 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7819280..7819295 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7823268..7823316 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7826207..7826235 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7827023..7828931 /estimated_length=1909 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7853126..7853531 /estimated_length=406 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7911701..7911729 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7937671..7937720 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7945612..7945664 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7946827..7946898 /estimated_length=72 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7975529..7975542 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7995313..7996306 /estimated_length=994 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 7996856..8000627 /estimated_length=3772 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8009460..8017484 /estimated_length=8025 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8114905..8115297 /estimated_length=393 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8128321..8128359 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8162362..8162371 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8177833..8177849 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8188287..8188341 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8216745..8217056 /estimated_length=312 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8227928..8228008 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8242351..8242365 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8251829..8251955 /estimated_length=127 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8262713..8263043 /estimated_length=331 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8275486..8275711 /estimated_length=226 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8297002..8297711 /estimated_length=710 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8310521..8312341 /estimated_length=1821 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8340634..8341212 /estimated_length=579 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8344440..8345908 /estimated_length=1469 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8350823..8350999 /estimated_length=177 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8357395..8357457 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<8371014..>8375529) /locus_tag="PAL_GLEAN10013255" mRNA complement(join(<8371014..8371142,8373207..8373329, 8374090..8374212,8375020..>8375529)) /locus_tag="PAL_GLEAN10013255" /product="hypothetical protein" CDS complement(join(8371014..8371142,8373207..8373329, 8374090..8374212,8375020..8375529)) /locus_tag="PAL_GLEAN10013255" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09967.1" /db_xref="UniProtKB/Swiss-Prot:Q5T5N4" /translation="MEALRAAGRPNSVQPRRAPERASEGAQRRRRPLHLGPPEPQQAL QAPRDHPAPLAQRPRAAGAESDGGRSAAGPEGXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXALAAADHDEHRYVSSHLAGATRADKYRAFLRFQKEVVAKQDLLRSDLARSQA ALCHEKKLEQELQKVCVCDPRQFHKLQVLAAVFEDVCNSSLLFGDILREVKNEYELYM AILLKSPHTAQYQVPARDEPGFRLHPASPAAGAQSLLAQVQELEKWSLRSAAIGQAKE ELRALVKATKVALEHNDK" assembly_gap 8375208..8375301 /estimated_length=94 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8375572..8380256 /estimated_length=4685 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8387700..8387768 /estimated_length=69 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<8394963..>8459780) /locus_tag="PAL_GLEAN10013256" mRNA complement(join(<8394963..8395080,8396100..8396188, 8398719..8398799,8401377..8401488,8408065..8408237, 8413156..8413311,8414354..8414504,8416168..8416251, 8418301..8418443,8428947..8429133,8431892..8431984, 8435065..8435207,8441095..8441146,8442711..8442769, 8443772..8443822,8445096..8445251,8447270..8447410, 8458129..8458178,8459180..8459300,8459727..>8459780)) /locus_tag="PAL_GLEAN10013256" /product="cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A" CDS complement(join(8394963..8395080,8396100..8396188, 8398719..8398799,8401377..8401488,8408065..8408237, 8413156..8413311,8414354..8414504,8416168..8416251, 8418301..8418443,8428947..8429133,8431892..8431984, 8435065..8435207,8441095..8441146,8442711..8442769, 8443772..8443822,8445096..8445251,8447270..8447410, 8458129..8458178,8459180..8459300,8459727..8459780)) /locus_tag="PAL_GLEAN10013256" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]" /codon_start=1 /product="cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A" /protein_id="ELK09968.1" /db_xref="InterPro:IPR002073" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR023088" /db_xref="UniProtKB/Swiss-Prot:Q9Y233" /translation="MVAAAVPAAGPRFSGRVEYQDTNMQGVVYELNSYIEQRLDTGGD NQLLLYELSSIIKIATKADGFALYFLGECNNSLCIFTPPGVKEGRPRLVPAGPIAQGT TTSAYVAKSRKTLLVEDILGDERFPKGTGLESGTRIQSVLCLPIVTAIGDLIGILELY RHWGKEAFCLSHQEVATANLAWASVAIHQVQVCRGLAKQTELNDFLLDVSKTYFDNIV AIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGRPIFKKTKEIR FSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGV VQMVNKISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHSECIYRVTMEKLSYHS ICTAEEWQGLMRFSLPGRLCKEIELFHFDIGPFENMWPGIFVYMVHRSCGTSCFELEK LCRFIMSVKKNYRRVPYHNWKHAVTVAHCMFAILQSSRGLFTDLERKGLLIACLCHDL DHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSGEYEQVL EIIRKAIIATDLALYFGNRKQLEEMHQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKL WPVTKLTANDIYAEFWAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYT TLTQIFPPTEPLLKACRDNLSQWEKVLRGEETAVWISSQPVAPGTSEKLPLKIDD" assembly_gap 8412694..8412751 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8450879..8450991 /estimated_length=113 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<8467204..>8601357) /locus_tag="PAL_GLEAN10013260" mRNA complement(join(<8467204..8467338,8468601..8468629, 8486893..8487021,8521556..8521681,8601231..>8601357)) /locus_tag="PAL_GLEAN10013260" /product="cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A" CDS complement(join(8467204..8467338,8468601..8468629, 8486893..8487021,8521556..8521681,8601231..8601357)) /locus_tag="PAL_GLEAN10013260" /codon_start=1 /product="cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A" /protein_id="ELK09969.1" /db_xref="UniProtKB/Swiss-Prot:Q9Y233" /translation="MSDLPRRRRSDATRLPRGRSPVRLAPERPELASRPRRALGGRKA KSVDVEAIHRDVTVDDMEVEKTEGKEGRVRIEERKSPPFTGLTDEKVKAYLSLHPQVL DEFVSESVSAETVEKWLKRKNNKPEDESAPREVSRLNLGSPEKIFDFVVSEGGGEGMP SGGGLSPGAGLLCVVACGQQR" assembly_gap 8486000..8486043 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8522436..8522839 /estimated_length=404 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8532500..8533792 /estimated_length=1293 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8546995..8547056 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8549011..8549026 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8558439..8558657 /estimated_length=219 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8558872..8558939 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8562009..8562034 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8565623..8565719 /estimated_length=97 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8571409..8572959 /estimated_length=1551 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8581635..8581722 /estimated_length=88 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8590835..8591679 /estimated_length=845 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8611531..8611878 /estimated_length=348 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8638602..8639297 /estimated_length=696 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8658982..8659144 /estimated_length=163 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8666514..8666625 /estimated_length=112 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8681235..8681785 /estimated_length=551 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8706520..8707959 /estimated_length=1440 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8728804..8729767 /estimated_length=964 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8737402..8737547 /estimated_length=146 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8748442..8748482 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8753038..8753079 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8762537..8762799 /estimated_length=263 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8790281..8790377 /estimated_length=97 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8791370..8791406 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8802391..8802479 /estimated_length=89 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8804534..8804749 /estimated_length=216 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8836421..8836559 /estimated_length=139 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8837300..8837528 /estimated_length=229 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8847454..8849867 /estimated_length=2414 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8868564..8869110 /estimated_length=547 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8874811..8875228 /estimated_length=418 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8877232..8877345 /estimated_length=114 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<8879931..>8959961) /locus_tag="PAL_GLEAN10013263" mRNA complement(join(<8879931..8880045,8880161..8880222, 8881100..8881234,8881981..8882245,8882677..8882861, 8959533..>8959961)) /locus_tag="PAL_GLEAN10013263" /product="Brachyury protein" CDS complement(join(8879931..8880045,8880161..8880222, 8881100..8881234,8881981..8882245,8882677..8882861, 8959533..8959961)) /locus_tag="PAL_GLEAN10013263" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO_process: GO:0045449 - regulation of transcription [Evidence IEA]" /codon_start=1 /product="Brachyury protein" /protein_id="ELK09970.1" /db_xref="InterPro:IPR001699" /db_xref="InterPro:IPR002070" /db_xref="InterPro:IPR008967" /db_xref="UniProtKB/Swiss-Prot:Q9GL27" /translation="MFAVVGPRRPCGGPETLTASPLTQCGAGGVPGPSSICGDRDGNK GPVRDFSAVSAHLRIARGSAETHRERREGGLEPHGGTPHRSASLRRPAGARGLHGAPE ASTGHPRPPRAPEASTGRPRPPRGARGKAILAERLASSPHQGAGKSLQYRVDHLLSAV ESELQAGSEKGDPTERELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGL DPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAP VSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAY QNEEITALKIKYNPFAKAFLDAKERSDHKDVMEEPGDSQQSGYSQRTVCCSPPGVPCL GSDR" assembly_gap 8881375..8881400 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8882865..8883562 /estimated_length=698 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8884510..8884524 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8889402..8890496 /estimated_length=1095 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8896200..8896740 /estimated_length=541 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8900394..8900466 /estimated_length=73 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8913530..8913652 /estimated_length=123 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8916207..8916239 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8921103..8921181 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8931496..8931511 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8936731..8937055 /estimated_length=325 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8953474..8953622 /estimated_length=149 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8962995..8964306 /estimated_length=1312 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<8965965..>9000577) /locus_tag="PAL_GLEAN10013264" mRNA complement(join(<8965965..8966271,8973543..8973572, 8974860..8974918,8976220..8976255,8978202..8978283, 8979369..8979451,8980027..8980113,8998477..8998726, 8999822..8999954,9000535..>9000577)) /locus_tag="PAL_GLEAN10013264" /product="Vesicle transport protein SFT2A" CDS complement(join(8965965..8966271,8973543..8973572, 8974860..8974918,8976220..8976255,8978202..8978283, 8979369..8979451,8980027..8980113,8998477..8998726, 8999822..8999954,9000535..9000577)) /locus_tag="PAL_GLEAN10013264" /note="GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]" /codon_start=1 /product="Vesicle transport protein SFT2A" /protein_id="ELK09971.1" /db_xref="InterPro:IPR005336" /db_xref="InterPro:IPR007305" /db_xref="UniProtKB/Swiss-Prot:Q8WV19" /translation="MKKSPEIISGRMTFALCCYSLAFMRFAYKVQPRNWLLFACHATN EVAQLIQGGRLIKHDPGSALHFRFREKAVRVAVPSPHCIGQQVEALEAMELVDLDGSG STQSGPVLEYRYVVRPLCEYRHHLLVGGRDGGGSRREADGVLDASSLSFSTRLRWFAI CFVSGVLFSILGTGLLWLPGGLKLFAVFYTFGNIAALASTCFLMGPMKQLKKMFETTR LLATIIMILCFVLTLCAALWWHKKGLALLFCILQFLSMTWYSLSYIPYARSRRVQEER RLAGGSDAAWGPQHGLETSALCKRRALCGSRTAATVSCGHLAPATRSWAPDLCGCLGS GHSALFFPEADAPLPKCPSCWAGTGYVAGGPGESQ" assembly_gap 8967490..8967660 /estimated_length=171 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8984050..8984115 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8985008..8985519 /estimated_length=512 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 8991361..8991384 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9007404..9007690 /estimated_length=287 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9015712..9015779 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9017106..9018134 /estimated_length=1029 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9022804..9022836 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<9024991..>9083525) /locus_tag="PAL_GLEAN10013267" mRNA complement(join(<9024991..9025116,9027091..9027228, 9029827..9029944,9031362..9031438,9033990..9034151, 9035032..9035190,9036831..9036920,9043206..9043331, 9044207..9044337,9046607..9046709,9053933..9053997, 9054538..9054626,9056200..9056270,9059237..9059379, 9060788..9060825,9063029..9063135,9064474..9064553, 9066630..9066710,9074484..9074565,9078355..9078471, 9083436..>9083525)) /locus_tag="PAL_GLEAN10013267" /product="Ribosomal protein S6 kinase alpha-2" CDS complement(join(9024991..9025116,9027091..9027228, 9029827..9029944,9031362..9031438,9033990..9034151, 9035032..9035190,9036831..9036920,9043206..9043331, 9044207..9044337,9046607..9046709,9053933..9053997, 9054538..9054626,9056200..9056270,9059237..9059379, 9060788..9060825,9063029..9063135,9064474..9064553, 9066630..9066710,9074484..9074565,9078355..9078471, 9083436..9083525)) /locus_tag="PAL_GLEAN10013267" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]" /codon_start=1 /product="Ribosomal protein S6 kinase alpha-2" /protein_id="ELK09972.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000961" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR017892" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:Q9WUT3" /translation="MLPARLTLVGRGAAVPCGSAMFHPSEVDGKEEGVVKEIDISHHV KEGFEKADPSQFELLKVLGQGSYGKVFLVRKVKGSDARQLYAMKVLKKATLKVRDRVR SKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKF YLAELALALDHLHSLGVIYRDLKPENILLDEEGHIKITDFGLSKEAIDHDKRAYSFCG TIEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMALVLKAKLGMP QFLSPEAQSLLRALFKRNPCNRLGAGSDGVEEIKRHPFFATIDWNKLYRKEIKPPFKP AVGRPEDTFHFDPEFTARTPTDSPGVPPSANAHHLFRGFSFVASSLAQEASQQEAPSA PVHPVVQQLHGNNVHFTDGYEVKEDLGVGSYSVCKRCVHKATDAEYAVKIIDKSKRDP SEEIEILLRYGQHPNIITLKDVYDDGRLVYLVTELMRGGELLDRILQHRCFSEREASH VLCTVAKTVDYLHSQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLM TPCYTANFVAPEVLKRQGYDAACDIWSLGILLYTMLAGFTPFANGPDDTPEEILARVG SGEYALSGGNWDSISDAAKDVVSKMLHVDPHQRLTAVQVLKHPWIVNREGLSQNQLSR QDVHLVKGAMAATYFALNRTPRAPRLEPVLSSSLAQRRGMKRLTSTRL" assembly_gap 9025430..9025591 /estimated_length=162 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9037113..9037448 /estimated_length=336 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9044676..9044780 /estimated_length=105 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9051408..9051434 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9051759..9052723 /estimated_length=965 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9069325..9069546 /estimated_length=222 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9074675..9074763 /estimated_length=89 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9090856..9090873 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9106342..>9109421 /locus_tag="PAL_GLEAN10013272" mRNA join(<9106342..9106438,9109135..>9109421) /locus_tag="PAL_GLEAN10013272" /product="hypothetical protein" CDS join(9106342..9106438,9109135..9109421) /locus_tag="PAL_GLEAN10013272" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09973.1" /translation="MTADVSKAKSSTVTRSLECQQNVSSRAVLGLPDHIQTDFVYRSQ LGRSCNLQPSHLHWVLVPEARGQWTPAHDAHDKCSPPRLSATARGSAVDLLTVGSFCL SHARAEPRRTHNHSQNVTLVSLSRL" assembly_gap 9126278..9126925 /estimated_length=648 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9137332..9137910 /estimated_length=579 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9147490..9147512 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9153838..9154102 /estimated_length=265 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9154470..9154777 /estimated_length=308 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9157743..9157786 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9173622..9173682 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9177317..9177332 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9183304..9183422 /estimated_length=119 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9193407..9194208 /estimated_length=802 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9206901..9207294 /estimated_length=394 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9213474..9213573 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9220797..9220865 /estimated_length=69 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9226237..9228206 /estimated_length=1970 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9231547..9234082 /estimated_length=2536 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9270715..9270737 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<9281961..>9298128) /locus_tag="PAL_GLEAN10013278" mRNA complement(join(<9281961..9282296,9283728..9283802, 9285210..9285255,9286443..9286556,9289937..9290007, 9297291..9297453,9298040..>9298128)) /locus_tag="PAL_GLEAN10013278" /product="Ribonuclease T2" CDS complement(join(9281961..9282296,9283728..9283802, 9285210..9285255,9286443..9286556,9289937..9290007, 9297291..9297453,9298040..9298128)) /locus_tag="PAL_GLEAN10013278" /note="GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0033897 - ribonuclease T2 activity [Evidence IEA]" /codon_start=1 /product="Ribonuclease T2" /protein_id="ELK09974.1" /db_xref="InterPro:IPR001568" /db_xref="UniProtKB/Swiss-Prot:Q9CQ01" /translation="MEPAAARRALLCSVCLALWCLRCAHGLRSRLAVSLDRGVACAAL VDRNRFSEPVVRPPAISVLQFAAPCGRNKSGTSSRAKAGEDLVQDMKIYWPDVIHSSD NCTHLWKHEWEKHGTCAAQLDALNSQKKYFGKGLDLYKGLALNSMLEKFGIIPSGNYY QIADIKDALANVYGVIPKIQCLPPKQDEEVQTLGQIELCFTKDLQLRNCTEHREPEAR GRGAWPAGVATGLEVCKDGPAFYPPPQXXXXXXXXXXXXEERAAGRCSWTGEAKAAFA ALDVGRFRCSAFHVPSASRFW" assembly_gap 9282084..9282117 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9287253..9287369 /estimated_length=117 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9295956..9296171 /estimated_length=216 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9315125..9315795 /estimated_length=671 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9319488..>9342490 /locus_tag="PAL_GLEAN10013279" mRNA join(<9319488..9319545,9320012..9320100,9320744..9320881, 9323278..9323358,9325444..9325657,9334372..9334575, 9335887..9335955,9340112..9340151,9341028..9341124, 9342410..>9342490) /locus_tag="PAL_GLEAN10013279" /product="FGFR1 oncogene partner" CDS join(<9319488..9319545,9320012..9320100,9320744..9320881, 9323278..9323358,9325444..9325657,9334372..9334575, 9335887..9335955,9340112..9340151,9341028..9341124, 9342410..9342490) /locus_tag="PAL_GLEAN10013279" /note="GO_component: GO:0005813 - centrosome [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0034453 - microtubule anchoring [Evidence IEA]" /codon_start=1 /product="FGFR1 oncogene partner" /protein_id="ELK09975.1" /db_xref="InterPro:IPR006594" /db_xref="InterPro:IPR018993" /db_xref="UniProtKB/Swiss-Prot:Q2YDD1" /translation="QNKTPLVNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQ PETSTFQSLEGRENLARDLGIVEAEGTVGGPLLLEVIRRCQQKGRGPAGVEGALDLSD AHSPPKSPEERTSPHTAPSKIPRYKGQGKKKTSGQKSGAKVTCMRAEGRAARGADRGR AGHLRALSSYYLGPCGADRGRAGRLWALSSRCGGEPDLSRSRLGWNQSAVSPCPHFSF LSFLVRASEPSKQGGSLASLSDAPSFKSGLSALPGAPSSKDSESKRANTVLKDLKLVN DKIGSLGLGTGEDDDYADDFNSTSHRSEKSELSIGEDIEEDLSVGLDDANTSDKLDDL TQDLTVSQLSDVADYLEDVAFT" assembly_gap 9326733..9326795 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9332083..9333261 /estimated_length=1179 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9333770..9333873 /estimated_length=104 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9338887..9338919 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9362243..9362260 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9372321..9372353 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9375254..9375330 /estimated_length=77 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9383702..9383950 /estimated_length=249 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9385835..9385875 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9387268..9387539 /estimated_length=272 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9393732..9394742 /estimated_length=1011 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9397652..9397795 /estimated_length=144 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9402582..>9403783 /locus_tag="PAL_GLEAN10013282" mRNA join(<9402582..9402590,9402694..9402884,9402970..>9403783) /locus_tag="PAL_GLEAN10013282" /product="C-C chemokine receptor type 6" CDS join(9402582..9402590,9402694..9402884,9402970..9403783) /locus_tag="PAL_GLEAN10013282" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0016493 - C-C chemokine receptor activity [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]" /codon_start=1 /product="C-C chemokine receptor type 6" /protein_id="ELK09976.1" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR000355" /db_xref="InterPro:IPR004067" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/Swiss-Prot:P51684" /translation="MSTELMNSSVSYLNDNYSELDYTIDYDSLVCSLQEVRAFSRLFV PIAYSLICVFGLLGNILVVVTFAHATGSWVFSNALCKLTKGVYTINFTCGMLLLACVS LDRYVAIVQATKSFRLRARTLAHRRAVCLAVWALSVLISSSTFAFNQKYALQGGDVCE PRFHPAADPLPWKLLVLGLQLLFGFFVPLVFMVFCYVFIVRTLVQAQNSKRHKAIRVI IAVVLVFLACQIPHNVVLLVTAANLGKVNRSCNAEKLIGYAKNLTEVLAFLHCCLNPV LYAFIGQRFRKYFLKIMKDLWCVRRKQKSPGFSCSRLYSETFISRQNSETVDNDNPSS FTM" assembly_gap 9414253..9414721 /estimated_length=469 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9417359..9417379 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<9418129..>9419076) /locus_tag="PAL_GLEAN10013283" mRNA complement(<9418129..>9419076) /locus_tag="PAL_GLEAN10013283" /product="Putative G-protein coupled receptor 31" CDS complement(9418129..9419076) /locus_tag="PAL_GLEAN10013283" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]" /codon_start=1 /product="Putative G-protein coupled receptor 31" /protein_id="ELK09977.1" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/Swiss-Prot:O00270" /translation="MRAPNCSVHGDDAVAVAVGSLLLLESGLGLLANAVALWALLFRL KAWKPYAVYLFHLAVADLLLTVCLPFRAAFFLRRKAWSPGLAPCRALLFLWGLSRGVG VAFLTSVALDRYFRVVHPRLKVNLLTPRGAQVISGLVWLLAGALSHQSFLVSEAECPR SDPGEGVSFRLSWQEALSFLRFILPFGLILFCSASIIRTLRKRLRDPDKQPKLQRARA LVAAVAVLFALCFLPNFLAQVSMAVFLGTDSCRVQRALAHAADVTSSLTGLQSVLNPV VYCFSSPAFRHSYRKVFYTLRGRGPGAPAPACDSRDSYS" assembly_gap 9423814..9424151 /estimated_length=338 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9434722..9435727 /estimated_length=1006 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<9440716..>9462166) /locus_tag="PAL_GLEAN10013285" mRNA complement(join(<9440716..9440981,9457172..9457297, 9458127..9458356,9458957..9459138,9462080..>9462166)) /locus_tag="PAL_GLEAN10013285" /product="Protein unc-93 like protein A" CDS complement(join(9440716..9440981,9457172..9457297, 9458127..9458356,9458957..9459138,9462080..9462166)) /locus_tag="PAL_GLEAN10013285" /codon_start=1 /product="Protein unc-93 like protein A" /protein_id="ELK09978.1" /db_xref="InterPro:IPR010291" /db_xref="InterPro:IPR016196" /db_xref="UniProtKB/Swiss-Prot:Q710D3" /translation="MERTLRNVLVVSLGFLLLFTAYGGLQSLQSSLYSEEGLGVTVLS TLYGAVLLSSMLLPPLLIRTLGCKWTIVASMSCYVAFSLGNFYASWYTLIPTSILLGL GAAPLWSAQGTYLTLMGNVQAEEAGRVARDVVNRYFGIFFLIFQSSGVWGNLISSLVF GQLPTHEPIPEQQLLSCGARDCLMAKAPTNSTQRVPQKLIYTLLGIYTVLYGVLFEKD KEAAFANYRLGEALGFVVAFGYSAFLCVSVKLYILLGVLCLTMAAYGIVEYQESQDLG RPPAGGATRPAEEGETQTKM" assembly_gap 9449195..9450687 /estimated_length=1493 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9454975..9455233 /estimated_length=259 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9459643..9459704 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9481072..9481247 /estimated_length=176 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9491085..9492715 /estimated_length=1631 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9516264..9516302 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9518651..9518723 /estimated_length=73 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9524893..>9525120 /locus_tag="PAL_GLEAN10013288" mRNA <9524893..>9525120 /locus_tag="PAL_GLEAN10013288" /product="hypothetical protein" CDS 9524893..9525120 /locus_tag="PAL_GLEAN10013288" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09979.1" /translation="MWTAGTPASGSTPCSGHLCFQVSRLPAPGRPVTSDLHVGSEQQV RPEAQGNVDLNRACPVLMPPRISGVSPRLAR" assembly_gap 9526029..9526139 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<9541781..>9542161) /locus_tag="PAL_GLEAN10013289" mRNA complement(<9541781..>9542161) /locus_tag="PAL_GLEAN10013289" /product="hypothetical protein" CDS complement(9541781..9542161) /locus_tag="PAL_GLEAN10013289" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09980.1" /translation="MRRNRNLEHTLALAALPPARHVAQSAARNPRRSRNFRHRPRPGL RLRTRSVASAAGRPDGRRRLTVCGCVERGVTERALGTDRLCESFRDLSESHRRRDALA GCGGPCGQPGLSPSVQELVACWGR" assembly_gap 9550631..9551370 /estimated_length=740 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9556135..9556295 /estimated_length=161 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9559034..9559787 /estimated_length=754 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9567109..9568576 /estimated_length=1468 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9569939..>9570544 /locus_tag="PAL_GLEAN10013291" mRNA <9569939..>9570544 /locus_tag="PAL_GLEAN10013291" /product="hypothetical protein" CDS 9569939..9570544 /locus_tag="PAL_GLEAN10013291" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09981.1" /translation="MAGRSLPEGPASCGSDGDTLLRPGEPWTPIGRQEAEPSCVLAHP ALVPTRRVRRSVARLLRAEIVSQPLLAPPPHSSPALGLPSVRGSPQRTPPSAPSGNTP TAPKQRAAETAACTKPSSRLDKAPSCPHEFTADTSKGQRSDCKGHTVRLAEIGWVRLS HVLIFMKKLTLAAAQTRRRYRRGDLATPLTAPVGLTCVFAL" assembly_gap 9576332..9576361 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9584546..9584681 /estimated_length=136 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9593595..9594968 /estimated_length=1374 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9597130..9597140 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9599415..9599491 /estimated_length=77 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9600195..9600230 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9619075..9619115 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9623836..9623909 /estimated_length=74 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9638236..9638475 /estimated_length=240 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9645355..9647093 /estimated_length=1739 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9654388..>9756501 /locus_tag="PAL_GLEAN10013292" mRNA join(<9654388..9654510,9666817..9666969,9675909..9676104, 9679184..9679299,9680919..9681082,9683761..9683921, 9686094..9686251,9688390..9688501,9689531..9689692, 9696743..9696837,9697662..9697924,9703116..9703185, 9706855..9706973,9710474..9710535,9710664..9710869, 9713493..9713638,9713952..9714046,9714527..9714792, 9716198..9716341,9717879..9718077,9719995..9720113, 9722278..9722364,9734594..9734659,9734816..9734889, 9735282..9735400,9736791..9736985,9737497..9737591, 9737880..9738065,9740455..9740709,9740757..9740909, 9741035..9741457,9743488..9743523,9748579..9748716, 9752125..9752380,9755415..9755499,9756348..>9756501) /locus_tag="PAL_GLEAN10013292" /product="Afadin" CDS join(9654388..9654510,9666817..9666969,9675909..9676104, 9679184..9679299,9680919..9681082,9683761..9683921, 9686094..9686251,9688390..9688501,9689531..9689692, 9696743..9696837,9697662..9697924,9703116..9703185, 9706855..9706973,9710474..9710535,9710664..9710869, 9713493..9713638,9713952..9714046,9714527..9714792, 9716198..9716341,9717879..9718077,9719995..9720113, 9722278..9722364,9734594..9734659,9734816..9734889, 9735282..9735400,9736791..9736985,9737497..9737591, 9737880..9738065,9740455..9740709,9740757..9740909, 9741035..9741457,9743488..9743523,9748579..9748716, 9752125..9752380,9755415..9755499,9756348..9756501) /locus_tag="PAL_GLEAN10013292" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]" /codon_start=1 /product="Afadin" /protein_id="ELK09982.1" /db_xref="InterPro:IPR000159" /db_xref="InterPro:IPR000253" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR002710" /db_xref="InterPro:IPR008984" /db_xref="InterPro:IPR018444" /db_xref="UniProtKB/Swiss-Prot:P55196" /translation="MLATTELLWLTQEIMLATPLPSPGLRTVPSGVFHAVLGGRWGCG NSAVSPGPRYCSAEVLGLAPVPVPPLAEVPPLAEVPPLSIHHSPAACQDLEFHGVMRF YFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEER RLDTDEKPLVVQLNWNKDDREGRFVLKNENDAVAPKKAQSNGPEKQEKEGVIQNFKRT LSKKEKKEKKKREKEATRQASDKDDRALQGDDIENCRLAAELYKDMPETSFTRTISNP EVVMKRRRQQKLERRMQEFRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADF AVAEALEKYGLEKENPKDYCIARVMLPPGAQHSDEKGAKEIILDDDECPLQIFREWPS DKGILVFQLKRRPPDYVPRKAKKHADGKPARAKERADGGGPALPPEKLPYLVELSPDG SDSRDKPKLYRLQLSVTEVGTEKLDDSSIQLFGSGIQPHHCDLTNMDGVVTVTPRSMD AETYVEGQRISETTMLQSGMNVRFGASHVFKFVDPSVDHALTKRPVDGGLTAKGPRHK PGVVQETAFEFGGDVHSGMALPTSKSTTRLDSDRVSSASGTAERGMVKPVSRVGQQPD YRRQESRSQDAAGPEPTLPASIEFRESSEDSFLSAIINYTNSSTVHFKLSPTYVLYMA CRYVLSSQYRPDVSPTERTHKVIAIVNRMVSMMEAVIQKQKNIAGALAFWMANASELL NFIKQDRDLSRITLDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPDENSLQRP KIDAVLHTLTGAMCLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTGPESGLCSHYW GAIIRQQLGHVEAWAEKQGLELAADCHLSRIVQATTLLTMDKYAPDDIPNINSTCFKL NSLQLQALLRSYHCAPDEPFIPADLIENVVAVAENTADELARSDGRDVQLQEDPDLQL PFLLPEDGYSCDVVRNVPSGLQEFLDPLCQRGFCRLVPHARSPGTWTVYFEGADYESH LMRDSTELASIARAQPLRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVK GGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTTSVVTLEVAKQGAIYHGLA TLLSQPSPTMQRLSDRRGSAKPRPKSEGFELYNSSAQNGSPESPQPPWAEYSEPKKLP GDDRLTKNRADHRSSPNVATDQPPGPGCKTAHAPGTAARVTSVSTGNLCTEEQSPPPR PEAYPIPTQTYAREYFTFPASKSQDRVAPPQHQWADYEEKPRAHVDGSHSSIAVQRVT RSQEELREDKAYQLERHRLEGTLDRKSDSDVWLNQGSSLGSSTSSQEHLDPASKSGTP ASTLTRSGPGRWKTPAATPPVPMGWLNQGSSLGSSTSSQEHLDPASKSGTPASTLTRS GPGRWKTPAATPPVPMGPEKPATLPRPQETVIRELQPQQQPRTIERRDLQYITVSKEE LSSGDSLSPDPWKRDAREKLEKQQQMHIVDMLSREIQELQGKAERSAEEGDRLRKLML EWQFQKRLQESKQKDEDEEDEEDDDVDTVLIMQRLEAERRARQTAVPAISVLDLLQDE ERQRQRQLEEMQRREAEDRARQDAARGQQQEEARAKRDAEEKRRQEEGYYSRLEAERR RQHDEAERRLLAPVIILRMHIKFQFDLWREKEEEREREEKKKKKKKKKKKKEVVAYNE EEEEEEDCGPAGPNSYTGSTGTLFGAHDAYRDLREKPPKSHDADPPASSGAPENLTFR ERQRLFSQGHDVSNKVKASRKLTELENELNTK" assembly_gap 9655719..9655800 /estimated_length=82 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9682446..9682479 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9717076..9717190 /estimated_length=115 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9740930..9741012 /estimated_length=83 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9760420..9760498 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9761049..9761563 /estimated_length=515 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9766038..9766276 /estimated_length=239 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9777421..9777431 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9783116..9783222 /estimated_length=107 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9786494..9786583 /estimated_length=90 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9787204..9787243 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9790072..>9796983 /locus_tag="PAL_GLEAN10013298" mRNA join(<9790072..9790148,9791053..9791127,9792591..9792716, 9794349..9794525,9795478..9795629,9796298..9796489, 9796820..>9796983) /locus_tag="PAL_GLEAN10013298" /product="Kinesin-like protein KIF25" CDS join(9790072..9790148,9791053..9791127,9792591..9792716, 9794349..9794525,9795478..9795629,9796298..9796489, 9796820..9796983) /locus_tag="PAL_GLEAN10013298" /note="GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]" /codon_start=1 /product="Kinesin-like protein KIF25" /protein_id="ELK09983.1" /db_xref="InterPro:IPR001752" /db_xref="UniProtKB/Swiss-Prot:Q9UIL4" /translation="MVMPLRCLAVVTVQRHWMFPDEAGVRVYGPAEPQTAVFEDVCPL LTSLLDGYDVCILALGQTGSGKTYTMLGPPSDAPRDVGLVPRAVEGLFRLISENPSRS TQVEVSVMEVYNNDIFDLLAKDGRTAVPGVKPEVSTTKEGRKEVSPLTRVAVCSAGEC TALIRAGLQLRAQHATAVHAASSRSHLIVTVTVTTAPSCHSSAEQPWSPTAPQEAGPP QPAAGRRRGASRRASPGSPGASPAGPAAHAEQVHAKLQLVDLAGSECAGVSGVTGSAL RETSCINRSLAALADVLRALWERRGHVPYRNSKLTHVLQDALGD" assembly_gap 9791713..9791729 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9799890..9799970 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9807159..>9807461 /locus_tag="PAL_GLEAN10013300" mRNA <9807159..>9807461 /locus_tag="PAL_GLEAN10013300" /product="hypothetical protein" CDS 9807159..9807461 /locus_tag="PAL_GLEAN10013300" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09984.1" /translation="MVALSSFLSYKDIYVSGLTQCAVAVLPRAMRGHPRPFPPPLTGG PLSPDPASSLSRPCLVTFSDFHCLDTVVSSLGPTDRPSARRPYRTSVTLPRTPAGE" assembly_gap 9808057..9808141 /estimated_length=85 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9809692..9809914 /estimated_length=223 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9811739..9811798 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9813068..9813191 /estimated_length=124 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9815826..9815871 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9830201..9831331 /estimated_length=1131 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9832964..9833608 /estimated_length=645 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9839503..9839728 /estimated_length=226 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9840495..9840854 /estimated_length=360 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<9848359..>9936139) /locus_tag="PAL_GLEAN10013302" mRNA complement(join(<9848359..9848676,9849455..9849939, 9850884..9851147,9935797..>9936139)) /locus_tag="PAL_GLEAN10013302" /product="Dapper like protein 2" CDS complement(join(9848359..9848676,9849455..9849939, 9850884..9851147,9935797..9936139)) /locus_tag="PAL_GLEAN10013302" /codon_start=1 /product="Dapper like protein 2" /protein_id="ELK09985.1" /db_xref="UniProtKB/Swiss-Prot:Q5SW24" /translation="MHCSVRSFQENKKFREALLKSCPFWCSRSLQRQDPGGPSSDLLP ATATEDHPTIKERRQDSGGQEPGLATRGSTTPPRILSRSRMGTSRRTLPGEKLPEPSV NGGQIRLKQLIQSFYELSDGGSCSLSASCASVCSDRLSSSLGALLPASPNSRTSTGDC RPWSADETTVCGAPVPSWEPRATEEGSGRRLQATSRPRPVSTGDLDRVLPAEAGPQNA SVDPKATSFLCRGMDLPPHRLDPECQRDLECGGGREADPYPSPLHAVAPQTPLFALTR ETPKSDGHAPPSKPLPRTSGPSSIRPGPVLEAGPAGAYIDRLLRLRGRGEPPRGSADE QRSSGWEAAPSQGAESNSHPKKLTCAPGADRSAAECASLLHSAVTETSEDEASDYTAN RFGDGESSGSDVGAGVGGSGGCPARPRVHPHRPAHAPASARPALPPAPKLYHVKASRA LKRKIRRFQPAALKVMTTV" assembly_gap 9848883..9849251 /estimated_length=369 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9852870..9852881 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9856855..9857339 /estimated_length=485 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9862435..9863508 /estimated_length=1074 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9864859..9868009 /estimated_length=3151 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9869769..9869928 /estimated_length=160 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9870153..9871832 /estimated_length=1680 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9877371..9877792 /estimated_length=422 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9886283..9887022 /estimated_length=740 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9889936..9890145 /estimated_length=210 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9895226..9895290 /estimated_length=65 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9897859..9898233 /estimated_length=375 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9908065..9909365 /estimated_length=1301 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9915117..9915135 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9916199..9916787 /estimated_length=589 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9917092..9917145 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9920245..9920346 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9938664..9939006 /estimated_length=343 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9941085..9941100 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9944984..9945009 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9949030..9949506 /estimated_length=477 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9950013..9950191 /estimated_length=179 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9950695..9951593 /estimated_length=899 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9953408..9953767 /estimated_length=360 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <9957144..>10026428 /locus_tag="PAL_GLEAN10013303" mRNA join(<9957144..9957297,9959662..9959862,9965174..9965280, 9966548..9966647,9980534..9980581,9983514..9983564, 9984732..9984806,10001129..10001315,10004518..10004600, 10019146..10019245,10021200..10021474,10026364..>10026428) /locus_tag="PAL_GLEAN10013303" /product="SPARC-related modular calcium-binding protein 2" CDS join(<9957144..9957297,9959662..9959862,9965174..9965280, 9966548..9966647,9980534..9980581,9983514..9983564, 9984732..9984806,10001129..10001315,10004518..10004600, 10019146..10019245,10021200..10021474,10026364..10026428) /locus_tag="PAL_GLEAN10013303" /note="GO_component: GO:0005578 - proteinaceous extracellular matrix [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]" /codon_start=1 /product="SPARC-related modular calcium-binding protein 2" /protein_id="ELK09986.1" /db_xref="InterPro:IPR000716" /db_xref="InterPro:IPR002350" /db_xref="InterPro:IPR011497" /db_xref="InterPro:IPR018249" /db_xref="InterPro:IPR019577" /db_xref="UniProtKB/Swiss-Prot:Q9H3U7" /translation="DKDKDCSLDCGGSPQKPLCASDGRTFLSRCEFQRAKCKDPQLEI AYRGSCKDSDMLLDINRFGGLAPLPTQWPLGGALDEEEGPEFHRRPSGAREPFTQQPA SSGLRILHRCPLRSRPHMSRCVAERKYTQEQARKELQQVFIPECNDDGTYSQVQCHSY TGYCWCVTSNGRPISGTAVAHKTPRCPGSIGEKLPQREGTGRTDDASAPALETQPQGD EEDIASRYPTLWTEQVKSRQNKTNKNSVASCDEEQQSALEEARQPKNDNVVVPECAHG GLYKPVQCHLSTGYCWCVLVDTGRPVPGTSTRYEQPKCDHTARAHPIKARDLYKGRQL PGCPGAKKNEFLTSVLDALSTDMVHAVSDPSAPGRLSEPDPSHTLEERVVHWYFKLLD KNSSGDIGKKEIKPFKRFLRKKSKPKKCVKRFVDYCDANNDKSLSVHELMGCLGVTEE EGRGSARKRHTPKGNAERAPSRQVSVSAFQP" assembly_gap 9965335..9965594 /estimated_length=260 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9972185..9972215 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 9972745..9972801 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10021501..10021579 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10027182..10033504 /estimated_length=6323 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10049879..10050176 /estimated_length=298 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10059112..10059329 /estimated_length=218 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10067046..10067115 /estimated_length=70 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10069331..10069456 /estimated_length=126 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10080206..10080219 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10094890..10094954 /estimated_length=65 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10096731..10096758 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10111297..10111730 /estimated_length=434 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10116852..10120872 /estimated_length=4021 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10122244..10123670 /estimated_length=1427 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10124679..10124790 /estimated_length=112 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10125533..10127274 /estimated_length=1742 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10129260..10130374 /estimated_length=1115 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10140604..10140964 /estimated_length=361 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10142669..10142924 /estimated_length=256 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10149325..10153101 /estimated_length=3777 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10154594..10158491 /estimated_length=3898 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10162841..10165610 /estimated_length=2770 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10166596..10167086 /estimated_length=491 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10167708..10171436 /estimated_length=3729 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10173741..10173799 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10175876..10178964 /estimated_length=3089 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10180746..10184515 /estimated_length=3770 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10189403..10189414 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10195170..10195313 /estimated_length=144 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10199962..10200017 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10204566..10206587 /estimated_length=2022 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10217091..10217166 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10217604..10218048 /estimated_length=445 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10225313..10226092 /estimated_length=780 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10228047..10228360 /estimated_length=314 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10228753..10229143 /estimated_length=391 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10232918..10232947 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10243732..10244766 /estimated_length=1035 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10247673..10249901 /estimated_length=2229 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10250279..10252029 /estimated_length=1751 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10254169..10256263 /estimated_length=2095 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<10257284..>10257586) /locus_tag="PAL_GLEAN10013308" mRNA complement(<10257284..>10257586) /locus_tag="PAL_GLEAN10013308" /product="hypothetical protein" CDS complement(10257284..10257586) /locus_tag="PAL_GLEAN10013308" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09987.1" /translation="MPTPLLNADRCARLVQSCGVLVPVRHELRWLQSAVWTASLDDGF RSLRTAQQAADSGAHLEALHGQPGWAKFRLELMWQLEAPSRESFFGLPREVRRSLR" assembly_gap 10267298..10267701 /estimated_length=404 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10269917..10271197 /estimated_length=1281 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10273670..10273680 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10275535..10275545 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<10281904..>10309464) /locus_tag="PAL_GLEAN10013312" mRNA complement(join(<10281904..10282031,10289527..10289666, 10291437..10291534,10291933..10292204,10292621..10292848, 10294267..10294501,10295124..10295242,10296354..10296513, 10297167..10297274,10297443..10297661,10298038..10298190, 10298267..10298394,10298873..10299046,10299643..10299819, 10299961..10300131,10302362..10302458,10302548..10302688, 10304425..10304702,10306287..10306371,10307439..10307995, 10309413..>10309464)) /locus_tag="PAL_GLEAN10013312" /product="Thrombospondin-2" CDS complement(join(10281904..10282031,10289527..10289666, 10291437..10291534,10291933..10292204,10292621..10292848, 10294267..10294501,10295124..10295242,10296354..10296513, 10297167..10297274,10297443..10297661,10298038..10298190, 10298267..10298394,10298873..10299046,10299643..10299819, 10299961..10300131,10302362..10302458,10302548..10302688, 10304425..10304702,10306287..10306371,10307439..10307995, 10309413..10309464)) /locus_tag="PAL_GLEAN10013312" /note="GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0007155 - cell adhesion [Evidence IEA]" /codon_start=1 /product="Thrombospondin-2" /protein_id="ELK09988.1" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR000884" /db_xref="InterPro:IPR001007" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR003129" /db_xref="InterPro:IPR003367" /db_xref="InterPro:IPR006209" /db_xref="InterPro:IPR006210" /db_xref="InterPro:IPR008859" /db_xref="InterPro:IPR008985" /db_xref="InterPro:IPR013091" /db_xref="InterPro:IPR017897" /db_xref="UniProtKB/Swiss-Prot:Q95116" /translation="MLWMLVLPGLWASCSAQAGDQDEDTVVDLFSASNINRKTIGAKQ FRGPDPGGPAYRFVRFDYIPPVGAAALGRITRAMRAREGFFLMATLKQDRKTKGTLLA LEGPGASHRQFEIVSNGPADTLDLTYWLDGTQHVLSLEDVGLADSQWKNVTIQVTAET FSLYVGCDLIDSFALDEPFYEQLKTDKSRMYVAKGSSRDSHFRGLLQHVRLVFENSVE GALSMNGCPHGQGAEANAISEDTETLRLSPPGTEHVVPGAEHVVPGAEHVVPSTEHVV SGTEHMVPGAEQRPGVCERSCEELSSMVSELSGLRVIVNQLHENLHKVSSDNQFLWEL IGGPPKTRNVSACWQDGRFFAENETWVVDSCTKCACQKFKTVCHQISCPPATCASPTV AEGECCPSCFPSADGEEGWSPWAEWTECSATCGPGTQQRGRSCDVTSNTCLGPSIQTR ACSLGKCDNRIRQDGGWSHWSPWSSCSATCGLGNITRIRLCNSPVPQMGGKACKGSGR ETKGCQGPPCPIDGRWSPWSPWSACTVTCAGGIRERTRVCNSPEPQHGGQACVGDVRE QQMCSRRACPIDGCLSNPCFPGAECSSFPDGSWACGSCPAGFLGNGTHCEDLDECAVV TDVCFSTGKSHRCVNTRPGFHCLPCPPRLKGSQPFGVGLEAARMEKQVCEPENPCKDK THSCHQHAECIFLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNKNLVCATNATY HCVKDNCPHLPNSGQEDFDKDGVGDACDEDDDNDGVSDEKDNCQLLFNPRQFDYDKDE VGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGD GVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDEDGHQNNQDNCPYISNANQADH DHDGKGDACDSDDDNDGVPDDRDNCRLVFNPDQEDTDGDGRGDACKDDFDNDSVPDID DVCPENNAISETDFRNFQMVHLDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFD EFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQPTRAYGYS GVSLKVVNSTTGTGEHLRNALWHTGNTAGQVRTLWHDPKNIGWKDYTAYRWHLTHRPK TGYMRVLVHEGKQVMADSGPVYDHTFAGGRLGLFVFSQEMVYFSDLKYECRGHNLDTD AGKWVTPETQTHVAVRWEFHVGAEPPSSPAPLPVA" assembly_gap 10285466..10285533 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10292453..10292467 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10311786..10312073 /estimated_length=288 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10318599..10318632 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10338862..10338890 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10340574..10340753 /estimated_length=180 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10341828..10343012 /estimated_length=1185 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10344527..10344908 /estimated_length=382 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10346003..10347391 /estimated_length=1389 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10348698..10349972 /estimated_length=1275 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <10361845..>10362594 /locus_tag="PAL_GLEAN10013314" mRNA <10361845..>10362594 /locus_tag="PAL_GLEAN10013314" /product="hypothetical protein" CDS 10361845..10362594 /locus_tag="PAL_GLEAN10013314" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09989.1" /translation="MIGARGWRRESRNPQSAPSFQSRCLFRVEATDAPDVPAVAARRP PPEAALHGQLSNARTRCRTQRFGMAGAPMSRYVTACHVSPWQDTSHCHTTSCQNVSRC VLSCHATSQDAKTCLAVLHHVMPFLTTSHYATPHHVSPCQDMSRCVTPRYATEGQHHG PYSSSSVCSGLQESVGEGRLFAEIICWFACHKDNTWEVAFEKAPQLPGIEVTANLQMA HHKRTQKKLQSSDPASIMTLSFVSRNCADAQ" gene complement(<10363073..>10363285) /locus_tag="PAL_GLEAN10013315" mRNA complement(<10363073..>10363285) /locus_tag="PAL_GLEAN10013315" /product="hypothetical protein" CDS complement(10363073..10363285) /locus_tag="PAL_GLEAN10013315" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09990.1" /translation="MSLDPRRGGLHARHSAETEETENTSVGDDVARGHSPVAEGIRGG RPFGARFSAMFTNFGRPPTLGSYAVL" assembly_gap 10385812..10385874 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10397420..10397465 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10401092..10401280 /estimated_length=189 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10405782..10405816 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10408095..10408116 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10414930..10415070 /estimated_length=141 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10417096..10417156 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10419348..10419725 /estimated_length=378 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <10430058..>10430369 /locus_tag="PAL_GLEAN10013317" mRNA <10430058..>10430369 /locus_tag="PAL_GLEAN10013317" /product="hypothetical protein" CDS 10430058..10430369 /locus_tag="PAL_GLEAN10013317" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09991.1" /translation="MQGDGEQDHRLTARSRLRPPSGQRPVTEEEGAGLQALGMGYLIW VAIPELEELRRSQGKRPVPGTDEFESNREQLEHLAKAQRQQLTVRKRPITQRPHAERK Q" assembly_gap 10431174..10431240 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10460046..10460062 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10460316..10460576 /estimated_length=261 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10462864..10463708 /estimated_length=845 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <10463742..>10464017 /locus_tag="PAL_GLEAN10013318" mRNA <10463742..>10464017 /locus_tag="PAL_GLEAN10013318" /product="hypothetical protein" CDS 10463742..10464017 /locus_tag="PAL_GLEAN10013318" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09992.1" /translation="MEVAHVSMRWVQSGRHCKFRARDLCRRRHPTVWGLALRVPTPSG LHKRACSPSHSSASLARIGTGRGCGPDLSTQLSPEELHRNEHQLQNL" gene complement(<10465079..>10490627) /locus_tag="PAL_GLEAN10013319" mRNA complement(join(<10465079..10465228,10466185..10466263, 10470189..10470310,10470572..10470639,10471638..10471744, 10473173..10473293,10474249..10474369,10475915..10475985, 10477454..10477505,10478514..10478627,10479831..10479955, 10483140..10483161,10490439..>10490627)) /locus_tag="PAL_GLEAN10013319" /product="WD repeat-containing protein 27" CDS complement(join(10465079..10465228,10466185..10466263, 10470189..10470310,10470572..10470639,10471638..10471744, 10473173..10473293,10474249..10474369,10475915..10475985, 10477454..10477505,10478514..10478627,10479831..10479955, 10483140..10483161,10490439..10490627)) /locus_tag="PAL_GLEAN10013319" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="WD repeat-containing protein 27" /protein_id="ELK09993.1" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019781" /db_xref="InterPro:IPR019782" /db_xref="UniProtKB/Swiss-Prot:A2RRH5" /translation="MAEPPGDFCTDEGCAGDVVVEKYLAESKESASHVQLACRGPHCA FPVDGSELGVWNAGDPSRQNADFLLQGSPPRGTIVGTLLGKVLYLRLSPDDRVAAVCA GNKVFLLDVETQSTLAELEGHQGPVTAAEFCPWQAHVIISVSEDRSFKVWDHRLGSLI YSSSVLAASPLLSLFVDERSQQLVTGCAAGQLWIFSMVERHHYRRVTHVDLRKTGESF FTRRVGSHLCSLLGESQPPWASELEQGAGTEVALPVLSLAPCDLSLVLHPECASCLSP ENASCLWIGSSAGLFVFNLANFEFEAVLQYRDFRNLSIQVTGSCAMTNEAGSDKAFCV LTSLFGNQIAVLEVSVPALLRSWQRPAPARPLSVLPSGPGRRAGPAAGVPQPRQVVRV HGGAAVPRLSLLVALPLVLRVAHFSPIVAGLVVLLTRPRLVSAPGGFEILQQTI" assembly_gap 10466069..10466177 /estimated_length=109 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10480588..10480756 /estimated_length=169 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10490838..10490961 /estimated_length=124 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <10496480..>10497034 /locus_tag="PAL_GLEAN10013321" mRNA <10496480..>10497034 /locus_tag="PAL_GLEAN10013321" /product="hypothetical protein" CDS 10496480..10497034 /locus_tag="PAL_GLEAN10013321" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09994.1" /db_xref="UniProtKB/Swiss-Prot:Q6AY64" /translation="MAAPWKSALLMLLASQAVSWVNSFDEEEVPEEWILLHVVQGQIG AGNYSYLRLNHEGKIVLKMQSLKGDADLYVSDSTLHPSFDDYELQSATCGQDIVFIPA HFQRPVGIGVYGHPSHHQSEFEMKVYYDRTIEQYPFGETAYSDGTESSQKHAYAPEDA SQEEESVLWTILISILKLVLEILF" assembly_gap 10497196..10497210 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10497495..10497806 /estimated_length=312 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<10498300..>10514016) /locus_tag="PAL_GLEAN10013322" mRNA complement(join(<10498300..10498385,10499449..10499637, 10499916..10500024,10504459..10504614,10506414..10506567, 10508095..10508204,10508795..10508944,10509037..10509170, 10510825..10510908,10511529..10511659, 10513964..>10514016)) /locus_tag="PAL_GLEAN10013322" /product="PHD finger protein 10" CDS complement(join(10498300..10498385,10499449..10499637, 10499916..10500024,10504459..10504614,10506414..10506567, 10508095..10508204,10508795..10508944,10509037..10509170, 10510825..10510908,10511529..10511659,10513964..10514016)) /locus_tag="PAL_GLEAN10013322" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="PHD finger protein 10" /protein_id="ELK09995.1" /db_xref="InterPro:IPR001965" /db_xref="InterPro:IPR011011" /db_xref="InterPro:IPR019787" /db_xref="UniProtKB/Swiss-Prot:Q8WUB8" /translation="MGSGDSSRSCETSSQDLGFSYYPAENLIEYKWPPDETGEYYMLQ EQVSEYLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDL MIKEYPAKHAEYSVILQEKERQRITDHYKEYSQMQQQNTQKVEASKVPEYIKKAAKKA AEFNSNLNRERMEERRAYFDLQTHVIQVPQGKYRVLPTERTKVSSYPVALIPGQFQEY YKRYSPDELRYLPLNTALYEPPLDPELPALDSDGDSDEAEEGRGGERRRAEGTSDSSS GNVSEGEGLPDSQDESLQGRQRSRDKAATPRKDAPKRSVLSKSVPGYKPKVIPNALCG ICLKGKESNKKGKAESLIHCSQCDSSGHPSCLDMTMELVSMIKTYPWQCMECKTCIIC GQPHHEEEMMFCDVCDRGYHTFCVGLGAIPSGRWICDCCQRAPPTPRKMGRRGKNSKE G" assembly_gap 10515715..10516704 /estimated_length=990 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<10523722..>10535974) /locus_tag="PAL_GLEAN10013323" mRNA complement(join(<10523722..10523832,10525606..10525764, 10527505..10527654,10528300..10528506, 10535867..>10535974)) /locus_tag="PAL_GLEAN10013323" /product="Tctex1 domain-containing protein 3" CDS complement(join(10523722..10523832,10525606..10525764, 10527505..10527654,10528300..10528506,10535867..10535974)) /locus_tag="PAL_GLEAN10013323" /codon_start=1 /product="Tctex1 domain-containing protein 3" /protein_id="ELK09996.1" /db_xref="InterPro:IPR005334" /db_xref="UniProtKB/Swiss-Prot:Q8IZS6" /translation="MEKRGRGAAAPSNLAPQQPSAGPRKERRPSMFEKEAYAQILRER LRESIHDVQYVEPPFDDSIADIGKEWKSALAKLRFANSYRMEPLKKFQAYSVEAKVQQ LLKFWTPGTREFSVTGSPLRHSPKPNPTPEAFLVLKLPPTLQLTRCISSVTTDESLKD VKYDDKAFSHLSLELADRILIVVKEFGYYRYKFIIKVLFIQKAGQAINVASRWIWDVA WDSWVAAKHETETYVALALVFALYCE" assembly_gap 10536147..10536410 /estimated_length=264 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <10539111..>10559225 /locus_tag="PAL_GLEAN10013324" mRNA join(<10539111..10539276,10540472..10540611, 10541502..10541603,10541879..10541968,10543839..10543936, 10544383..10544454,10545454..10545753,10546514..10546616, 10549375..10549404,10550991..10551059,10551576..10551749, 10553474..10553557,10555120..10555196,10555709..10555834, 10556199..10556417,10557264..10557377,10558973..>10559225) /locus_tag="PAL_GLEAN10013324" /product="hypothetical protein" CDS join(<10539111..10539276,10540472..10540611, 10541502..10541603,10541879..10541968,10543839..10543936, 10544383..10544454,10545454..10545753,10546514..10546616, 10549375..10549404,10550991..10551059,10551576..10551749, 10553474..10553557,10555120..10555196,10555709..10555834, 10556199..10556417,10557264..10557377,10558973..10559225) /locus_tag="PAL_GLEAN10013324" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09997.1" /db_xref="UniProtKB/Swiss-Prot:Q4R6F2" /translation="ILEDPITTCLSPSVYDMICKLGFEVGGSHDINSIVTPDGEVCWK TLTDCVICAESAQGLDYWGSVRLLGPVCEAIHSHLSHLPRRQLEMQFAQWLQWTSSPE LFAEIFDALESLQSPAISLSLMKLTSCLERSLGDVFLLIGKECPFLLRDLLASEELAH VFGQSVMNVLEVFVGCPRGLNLRNVLWHGFAAPHEVPAKYCSTMVLLMAGLGQLLNSY LQHTECQQSPAPLAVAEGGLLTLMAPAAPLRSPAAYRSGLQRHSPSAFTYLQLVSMVV LKKVRCFADVTHEAPSVLEELMKKSTFILRIMLPYWELALIKFKSHRFADCAMLLLTQ LETGLRNVFATVNKCPRRLLTAESTALYTTFDEILAKHLNDGQVNQLPLFLGDPAMEF LWDFLNHQEGPRVRDRLSHGEVSLPGFPKEITDQLLAFSIVLLLRFVDEDVASVFKEK AAVKSLLSLAEGYSARFHPLSRLKKQVLSCERSLRVWPLLPLPEEAAREIARLEGNSE TNACSSLIIRITRELYHHLPENHCVFTGLENLPIEKCPQLLPELCSIRVPTLFCPRAV LEVLAVLQNIGRRCAHVSRQVAASWEQRHHQWVEKRLRSRQRRNYLCMLSSVKLLSPM LYLILLLIALELVNIHMVHGKNAHEYQQYLKFLKSLLQYTENLAAHTSPEKNKWVETV GLTHAALLKMRAFSEKEQMLMHLAKKPTSEAALWKYGSDTSGHVRKPLSNLALSSA" assembly_gap 10558431..10558594 /estimated_length=164 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10561308..10561622 /estimated_length=315 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10564296..10564366 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10564783..10565091 /estimated_length=309 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10574715..10574927 /estimated_length=213 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10576986..10577512 /estimated_length=527 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10580870..10581024 /estimated_length=155 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10582182..10582510 /estimated_length=329 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10584895..10585095 /estimated_length=201 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10601804..10603012 /estimated_length=1209 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10604662..10604796 /estimated_length=135 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10605948..10606689 /estimated_length=742 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10607101..10608109 /estimated_length=1009 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10622275..10622646 /estimated_length=372 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10627195..10627246 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10657453..10657529 /estimated_length=77 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10659904..10660339 /estimated_length=436 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10660560..10660669 /estimated_length=110 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10661774..10662252 /estimated_length=479 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10664276..10664707 /estimated_length=432 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10667094..10667546 /estimated_length=453 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10667812..10667858 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10670937..10670967 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10675564..10676514 /estimated_length=951 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10679108..10679281 /estimated_length=174 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10684280..10684466 /estimated_length=187 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10684743..10684793 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10698483..10698633 /estimated_length=151 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10711857..10711881 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10715110..10715955 /estimated_length=846 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10720761..10720901 /estimated_length=141 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10722837..10722960 /estimated_length=124 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10746476..10746493 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10760273..10760331 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10761901..10761939 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10765668..10765720 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<10773550..>10783712) /locus_tag="PAL_GLEAN10013331" mRNA complement(join(<10773550..10774150,10777258..10778032, 10779096..10779312,10779394..10779563,10779670..10779800, 10780272..10780332,10782114..10782371,10782589..10782649, 10783308..10783508,10783659..>10783712)) /locus_tag="PAL_GLEAN10013331" /product="Delta-like protein 1" CDS complement(join(10773550..10774150,10777258..10778032, 10779096..10779312,10779394..10779563,10779670..10779800, 10780272..10780332,10782114..10782371,10782589..10782649, 10783308..10783508,10783659..10783712)) /locus_tag="PAL_GLEAN10013331" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0007154 - cell communication [Evidence IEA]; GO_process: GO:0007219 - Notch signaling pathway [Evidence IEA]; GO_process: GO:0007275 - multicellular organismal development [Evidence IEA]" /codon_start=1 /product="Delta-like protein 1" /protein_id="ELK09998.1" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001774" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR006209" /db_xref="InterPro:IPR006210" /db_xref="InterPro:IPR011651" /db_xref="UniProtKB/Swiss-Prot:O00548" /translation="MGRRCALALAVVSALLCQVWSSGVFELKLQEFVNKKGLLGNRNC CRGGAGPPPCACRTFFRVCLKHYQASVSPEPPCTYGSAVTPGTFSLIIEALHTDSPDD LATENPERLISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRFVCDEHYYGEGCSVFC RPRDDAFGHFTCRDRGEKVCNPGWRGQYCTEAICLPGCDEQHGFCDKPGECKCRVGWQ GRYCDQCIRYPGCLHGTCQQPWQCTCQEGWGGLFCNQDLNYCTHHKPCRNGATCTNTG QGSYTCSCRPGFAGADCEAETDECAGQPCRNGGSCTDLENSYSCSCPPGFYGRVCELS AMACADGPCFNGGRCSDNPEGGYTCHCPVGFSGFNCEKKVDACSSSPCANGAQCVDLG DAYLCRCLAGFAGRHCDDNVDDCAPSPCAHGGTCRDGVNAFSCTCPPGYAGRNCSAPV SRCEHAPCHNGATCHQRDRRYLCECAEGYGGPNCQFLLPPVNFSEPHMEGRAGPLPWA AVCAGVVLVLVLLLGCAAAVVCVRLRLQKARPPSDPGRGETETMNNLANCQREKDLSV SVVAAPQLKNTNEKADLQAGHGAEKSSLKARCPRLDCNLAQELTGDAAGRDPHSKRDA EGQPQGSAGEGKGAPTLRGFLPVTFRLDVVLTFQNVDRAALSAPRGGQLHWPPLRLRV GAPSSQDEGPPTPPHLRGSKLVPTWRVTVCYCGYSDARPPHTWAVSILCCQRPGPLLR APQPGSAASLAREPGRASGSSSHRAVALRLCSPRSDERLEAVSRATGARAAXXXXXXT ARHSAVARLRERTARHSAAARLRERTVRHSAVAPRVLLAVDSAW" assembly_gap 10773688..10773706 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10783035..10783298 /estimated_length=264 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10784225..10784929 /estimated_length=705 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10785623..10785675 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10787203..10787292 /estimated_length=90 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10789338..10789449 /estimated_length=112 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10790700..10790801 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<10797389..>10798243) /locus_tag="PAL_GLEAN10013332" mRNA complement(<10797389..>10798243) /locus_tag="PAL_GLEAN10013332" /product="hypothetical protein" CDS complement(10797389..10798243) /locus_tag="PAL_GLEAN10013332" /codon_start=1 /product="hypothetical protein" /protein_id="ELK09999.1" /translation="MRPRRRGQGTQLRGREVTGPTGPGGERRGESRAQGTDGGAAGAG AQVPGTRXXXXXXXXXXXXXXXXXXXXHGASGQGGRDGAEPRAQPAEPRPNGRERRPT ALSPQAQPYLQMRSTAGDAPALPSPPSPRRGCSALPLPLGALPLQGPPPEGRSRASEG RSRASAAPEGRGAQAPRPLPGNRTRSEGRRPGVSASGGLGVRRSRLPAGAGGALSLPP SASRVSAARWSSGHVGHLTPRFRARTKSVRSPQPPASCRAVTESGALAAGSVAGRWEN ERGCPRQP" assembly_gap 10798031..10798089 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10799153..10799206 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10804747..10805046 /estimated_length=300 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <10806662..>10819894 /locus_tag="PAL_GLEAN10013334" mRNA join(<10806662..10807822,10809525..10809705, 10819725..>10819894) /locus_tag="PAL_GLEAN10013334" /product="Constitutive coactivator of peroxisome proliferator-activated receptor gamma" CDS join(10806662..10807822,10809525..10809705, 10819725..10819894) /locus_tag="PAL_GLEAN10013334" /codon_start=1 /product="Constitutive coactivator of peroxisome proliferator-activated receptor gamma" /protein_id="ELK10000.1" /db_xref="UniProtKB/Swiss-Prot:A6QNT4" /translation="MGVRGLQGFVGSACPHTRTAVNFKELAELHRSQHPGCAPTVVVD AMCCLRYWYTPESWVCGGQWREYFAALRDFVTAFTTVGIKLVFFFDGMVEQGKRAVWV RRRLKNNQEIARIFHYIKSHGEQPGRNMFFLPSGLAIFTRFALKTLGQETLCSLQEAD YEVASYGLQHNCLGILGEDTDYLIYDTCPYFSISELCLDSLDTVMLCREKLCESLELS LADLPLLACLLGNDTVPEGLFESFRFQCLSSYTSARKNSDKRGNVILAVADHISKVLR LHQGEKKLEEMLPLGQNKALFYKGVASYLLPGQTSPWIFQKPKGITTLGKQIVSVSTD PEFKPESLVCTHPESKEETPVCTHPETEQEDPMNMEPEMKQQVTMVSDTEILKVARAQ HVQAESYLVYGVMTSGEIECSNTLEDALDQALPSQAFVYRPMRQRVYSLLLGAGGGGA SGGPVVQEWFVHSGNPLRHPDLVRPLPMNVPGTDIPAVSTVPQSSGGFTVEML" gene <10825022..>10841212 /locus_tag="PAL_GLEAN10013335" mRNA join(<10825022..10825132,10827871..10827963, 10834828..10835034,10836246..10836354,10841088..>10841212) /locus_tag="PAL_GLEAN10013335" /product="Constitutive coactivator of peroxisome proliferator-activated receptor gamma" CDS join(10825022..10825132,10827871..10827963, 10834828..10835034,10836246..10836354,10841088..10841212) /locus_tag="PAL_GLEAN10013335" /codon_start=1 /product="Constitutive coactivator of peroxisome proliferator-activated receptor gamma" /protein_id="ELK10001.1" /db_xref="UniProtKB/Swiss-Prot:Q96EK7" /translation="MDTLLACLDLSSSREELQAVESRFQALCCLLTYLFVQVDTLSLE DLHAFIAQALCLQGKSLGQLMDLQLEHVDPRAVQLGSLLVRGLSMLVLVNSACGFPWS SSDFMPWNVFDGKLFHEKYLQSERGYTAEVLVEQDRSRLTRFHDLKSIVCKACVREDR RIVSRQHWRPHHSVAVQAGDAASNRPAPRGSAVRGVLQPWTQALRALTRQTVCL" assembly_gap 10829313..10829322 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10835481..10835511 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10845041..10845230 /estimated_length=190 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10848555..10848583 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10855494..10855698 /estimated_length=205 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10879088..10879245 /estimated_length=158 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<10882444..>10895154) /locus_tag="PAL_GLEAN10013337" mRNA complement(join(<10882444..10882629,10883457..10883563, 10888586..10888715,10891046..10891127,10892729..10892836, 10895042..>10895154)) /locus_tag="PAL_GLEAN10013337" /product="Proteasome subunit beta type-1" CDS complement(join(10882444..10882629,10883457..10883563, 10888586..10888715,10891046..10891127,10892729..10892836, 10895042..10895154)) /locus_tag="PAL_GLEAN10013337" /note="GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]" /codon_start=1 /product="Proteasome subunit beta type-1" /protein_id="ELK10002.1" /db_xref="InterPro:IPR001353" /db_xref="UniProtKB/Swiss-Prot:Q2TBX6" /translation="MLSSSAAYAGPGRDPAMEPHSAAGPVQLRFSPYAFNGGTVLAIA GEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKM YKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQR DSFKAGGSASAMLQPLLDNQVGFKNMQNVEHIPLSLDRAMRLVKDVFISAAERDVYTG DALKVCIVTKEGIREETIPLRKD" gene <10899012..>10906854 /locus_tag="PAL_GLEAN10013339" mRNA join(<10899012..10899065,10902290..10902435, 10904402..10904489,10905023..10905114,10906653..>10906854) /locus_tag="PAL_GLEAN10013339" /product="TATA-box-binding protein" CDS join(10899012..10899065,10902290..10902435, 10904402..10904489,10905023..10905114,10906653..10906854) /locus_tag="PAL_GLEAN10013339" /note="GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003702 - RNA polymerase II transcription factor activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]" /codon_start=1 /product="TATA-box-binding protein" /protein_id="ELK10003.1" /db_xref="InterPro:IPR000814" /db_xref="InterPro:IPR012294" /db_xref="UniProtKB/Swiss-Prot:P29037" /translation="MDQNSSLPPYAQGLASPQTPQLFHSQTLTTAPLPGTTPLYPSPV TPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVI MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV GSCDVKFPIRLEGLVLTHQQFXXXXXRSAVTST" assembly_gap 10906816..10906829 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10911832..10911952 /estimated_length=121 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<10914283..>10929703) /locus_tag="PAL_GLEAN10013340" mRNA complement(join(<10914283..10914441,10915640..10915753, 10916846..10916949,10918253..10918384,10918762..10919004, 10929547..>10929703)) /locus_tag="PAL_GLEAN10013340" /product="Programmed cell death protein 2" CDS complement(join(10914283..10914441,10915640..10915753, 10916846..10916949,10918253..10918384,10918762..10919004, 10929547..10929703)) /locus_tag="PAL_GLEAN10013340" /note="GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Programmed cell death protein 2" /protein_id="ELK10004.1" /db_xref="InterPro:IPR002893" /db_xref="InterPro:IPR007320" /db_xref="UniProtKB/Swiss-Prot:Q2YDC9" /translation="MTPDQEPQGKAPRTFSADLSPPDLPFVAFVLLRSLDLRDTMQPS ARSGGGRGVFRNQLPRKNDFYSYEPPSDDPPPEAGASLCLQLKSGAHLCRVCGCLGPK TCSRCHKAFYCSREHQTLDWRLGHKQACTQSGDLDNTVPDHNFLFPEFEIIIETEDEI TPEDVEKVDESEIVGSMGEVPEEELDSMAKHESREDTIFQNFKTKIAQEPEQILRYGR GIAPIWVSGENIPQEQDIPDCPCGAKRIFEFQVMPQLLNYLKADRLGRSVDWGVLAVY TCAESCRLGAGYTEEFVWKQEIADTP" assembly_gap 10918095..10918169 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10919561..10919762 /estimated_length=202 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 10928666..10928710 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(ALWS01059702.1:1..1061,gap(482),ALWS01059703.1:1..29339, gap(30),ALWS01059704.1:1..6459,gap(38),ALWS01059705.1:1..2256, gap(17),ALWS01059706.1:1..87895,gap(30),ALWS01059707.1:1..25445, gap(43),ALWS01059708.1:1..15628,gap(110),ALWS01059709.1:1..360, gap(198),ALWS01059710.1:1..51574,gap(13),ALWS01059711.1:1..2477, gap(14),ALWS01059712.1:1..19435,gap(38),ALWS01059713.1:1..48224, gap(11),ALWS01059714.1:1..11021,gap(38),ALWS01059715.1:1..25884, gap(420),ALWS01059716.1:1..1229,gap(34),ALWS01059717.1:1..28662, gap(44),ALWS01059718.1:1..54543,gap(48),ALWS01059719.1:1..684, gap(455),ALWS01059720.1:1..63447,gap(17),ALWS01059721.1:1..73348, gap(17),ALWS01059722.1:1..121163,gap(16),ALWS01059723.1:1..38408, gap(87),ALWS01059724.1:1..7939,gap(52),ALWS01059725.1:1..2889, gap(143),ALWS01059726.1:1..43152,gap(2098),ALWS01059727.1:1..30520, gap(1107),ALWS01059728.1:1..15144,gap(107),ALWS01059729.1:1..35041, gap(411),ALWS01059730.1:1..6005,gap(43),ALWS01059731.1:1..53070, gap(42),ALWS01059732.1:1..48788,gap(25),ALWS01059733.1:1..5699, gap(80),ALWS01059734.1:1..12924,gap(101),ALWS01059735.1:1..26346, gap(1084),ALWS01059736.1:1..14003,gap(630),ALWS01059737.1:1..10514, gap(57),ALWS01059738.1:1..22093,gap(25),ALWS01059739.1:1..15293, gap(35),ALWS01059740.1:1..7671,gap(60),ALWS01059741.1:1..5001, gap(574),ALWS01059742.1:1..26864,gap(35),ALWS01059743.1:1..431, gap(14),ALWS01059744.1:1..32183,gap(448),ALWS01059745.1:1..56469, gap(21),ALWS01059746.1:1..71514,gap(16),ALWS01059747.1:1..43620, gap(38),ALWS01059748.1:1..11060,gap(607),ALWS01059749.1:1..28844, gap(45),ALWS01059750.1:1..2751,gap(12),ALWS01059751.1:1..5470, gap(46),ALWS01059752.1:1..3774,gap(50),ALWS01059753.1:1..29445, gap(207),ALWS01059754.1:1..19253,gap(33),ALWS01059755.1:1..12052, gap(35),ALWS01059756.1:1..5295,gap(223),ALWS01059757.1:1..14721, gap(18),ALWS01059758.1:1..383,gap(15),ALWS01059759.1:1..27812, gap(254),ALWS01059760.1:1..15455,gap(566),ALWS01059761.1:1..34664, gap(27),ALWS01059762.1:1..24784,gap(194),ALWS01059763.1:1..9856, gap(46),ALWS01059764.1:1..8967,gap(55),ALWS01059765.1:1..74602, gap(2921),ALWS01059766.1:1..33585,gap(194),ALWS01059767.1:1..15014, gap(68),ALWS01059768.1:1..23440,gap(15),ALWS01059769.1:1..6686, gap(21),ALWS01059770.1:1..3470,gap(162),ALWS01059771.1:1..139010, gap(64),ALWS01059772.1:1..21698,gap(237),ALWS01059773.1:1..9731, gap(612),ALWS01059774.1:1..48844,gap(83),ALWS01059775.1:1..9883, gap(17),ALWS01059776.1:1..24928,gap(1690),ALWS01059777.1:1..37377, gap(18),ALWS01059778.1:1..24636,gap(62),ALWS01059779.1:1..3089, gap(1062),ALWS01059780.1:1..4769,gap(20),ALWS01059781.1:1..63582, gap(19),ALWS01059782.1:1..25238,gap(692),ALWS01059783.1:1..7758, gap(44),ALWS01059784.1:1..55459,gap(138),ALWS01059785.1:1..35844, gap(54),ALWS01059786.1:1..92511,gap(526),ALWS01059787.1:1..8606, gap(34),ALWS01059788.1:1..2306,gap(18),ALWS01059789.1:1..18410, gap(24),ALWS01059790.1:1..47663,gap(74),ALWS01059791.1:1..15189, gap(489),ALWS01059792.1:1..32952,gap(86),ALWS01059793.1:1..32910, gap(50),ALWS01059794.1:1..24392,gap(433),ALWS01059795.1:1..15232, gap(40),ALWS01059796.1:1..14143,gap(1000),ALWS01059797.1:1..15809, gap(584),ALWS01059798.1:1..12351,gap(25),ALWS01059799.1:1..399, gap(27),ALWS01059800.1:1..4230,gap(33),ALWS01059801.1:1..19992, gap(67),ALWS01059802.1:1..19806,gap(248),ALWS01059803.1:1..18287, gap(347),ALWS01059804.1:1..18053,gap(80),ALWS01059805.1:1..4457, gap(12),ALWS01059806.1:1..4071,gap(16),ALWS01059807.1:1..42204, gap(34),ALWS01059808.1:1..614,gap(89),ALWS01059809.1:1..402, gap(1457),ALWS01059810.1:1..35000,gap(28),ALWS01059811.1:1..13804, gap(267),ALWS01059812.1:1..408,gap(35),ALWS01059813.1:1..2189, gap(33),ALWS01059814.1:1..28456,gap(31),ALWS01059815.1:1..58121, gap(619),ALWS01059816.1:1..9386,gap(43),ALWS01059817.1:1..16748, gap(53),ALWS01059818.1:1..6326,gap(27),ALWS01059819.1:1..27323, gap(50),ALWS01059820.1:1..15032,gap(29),ALWS01059821.1:1..7819, gap(53),ALWS01059822.1:1..22448,gap(1579),ALWS01059823.1:1..3986, gap(41),ALWS01059824.1:1..63287,gap(2300),ALWS01059825.1:1..73243, gap(62),ALWS01059826.1:1..7279,gap(967),ALWS01059827.1:1..12134, gap(46),ALWS01059828.1:1..5412,gap(17),ALWS01059829.1:1..11146, gap(76),ALWS01059830.1:1..9101,gap(697),ALWS01059831.1:1..3204, gap(538),ALWS01059832.1:1..24823,gap(20),ALWS01059833.1:1..2012, gap(844),ALWS01059834.1:1..10838,gap(59),ALWS01059835.1:1..5533, gap(26),ALWS01059836.1:1..18327,gap(20),ALWS01059837.1:1..16970, gap(71),ALWS01059838.1:1..7310,gap(1134),ALWS01059839.1:1..12971, gap(279),ALWS01059840.1:1..6988,gap(739),ALWS01059841.1:1..49822, gap(15),ALWS01059842.1:1..1194,gap(40),ALWS01059843.1:1..66926, gap(18),ALWS01059844.1:1..3755,gap(58),ALWS01059845.1:1..11630, gap(274),ALWS01059846.1:1..50804,gap(61),ALWS01059847.1:1..6117, gap(51),ALWS01059848.1:1..21950,gap(415),ALWS01059849.1:1..22977, gap(3166),ALWS01059850.1:1..8379,gap(94),ALWS01059851.1:1..7135, gap(12),ALWS01059852.1:1..42950,gap(831),ALWS01059853.1:1..7228, gap(125),ALWS01059854.1:1..10374,gap(381),ALWS01059855.1:1..3700, gap(20),ALWS01059856.1:1..71695,gap(608),ALWS01059857.1:1..21465, gap(361),ALWS01059858.1:1..41234,gap(3005),ALWS01059859.1:1..3584, gap(4437),ALWS01059860.1:1..489,gap(3494),ALWS01059861.1:1..3500, gap(4452),ALWS01059862.1:1..727,gap(157),ALWS01059863.1:1..2362, gap(1319),ALWS01059864.1:1..9529,gap(952),ALWS01059865.1:1..4661, gap(1072),ALWS01059866.1:1..34561,gap(42),ALWS01059867.1:1..30357, gap(12),ALWS01059868.1:1..31130,gap(704),ALWS01059869.1:1..39274, gap(120),ALWS01059870.1:1..23189,gap(41),ALWS01059871.1:1..18579, gap(70),ALWS01059872.1:1..25862,gap(36),ALWS01059873.1:1..50401, gap(29),ALWS01059874.1:1..14926,gap(251),ALWS01059875.1:1..8479, gap(53),ALWS01059876.1:1..11876,gap(701),ALWS01059877.1:1..15076, gap(391),ALWS01059878.1:1..3302,gap(71),ALWS01059879.1:1..2289, gap(101),ALWS01059880.1:1..26787,gap(1403),ALWS01059881.1:1..15278, gap(430),ALWS01059882.1:1..16800,gap(826),ALWS01059883.1:1..678, gap(56),ALWS01059884.1:1..22067,gap(128),ALWS01059885.1:1..38108, gap(69),ALWS01059886.1:1..5023,gap(34),ALWS01059887.1:1..27739, gap(68),ALWS01059888.1:1..14754,gap(1062),ALWS01059889.1:1..4202, gap(29),ALWS01059890.1:1..27252,gap(51),ALWS01059891.1:1..11804, gap(1283),ALWS01059892.1:1..33385,gap(3900), ALWS01059893.1:1..48738,gap(2304),ALWS01059894.1:1..776,gap(1447), ALWS01059895.1:1..46921,gap(472),ALWS01059896.1:1..2491,gap(61), ALWS01059897.1:1..17137,gap(106),ALWS01059898.1:1..11715,gap(138), ALWS01059899.1:1..9981,gap(27),ALWS01059900.1:1..2281,gap(18), ALWS01059901.1:1..17825,gap(2544),ALWS01059902.1:1..20211,gap(24), ALWS01059903.1:1..4685,gap(1002),ALWS01059904.1:1..4573,gap(3231), ALWS01059905.1:1..14231,gap(10),ALWS01059906.1:1..1254,gap(722), ALWS01059907.1:1..11688,gap(49),ALWS01059908.1:1..3244,gap(490), ALWS01059909.1:1..17702,gap(67),ALWS01059910.1:1..3580,gap(252), ALWS01059911.1:1..4719,gap(1455),ALWS01059912.1:1..8005,gap(773), ALWS01059913.1:1..36678,gap(61),ALWS01059914.1:1..32834,gap(34), ALWS01059915.1:1..645,gap(18),ALWS01059916.1:1..31440,gap(60), ALWS01059917.1:1..25224,gap(28),ALWS01059918.1:1..10549,gap(55), ALWS01059919.1:1..8607,gap(40),ALWS01059920.1:1..16277,gap(24), ALWS01059921.1:1..16710,gap(50),ALWS01059922.1:1..3600,gap(52), ALWS01059923.1:1..5346,gap(46),ALWS01059924.1:1..6634,gap(1146), ALWS01059925.1:1..14353,gap(414),ALWS01059926.1:1..2099,gap(34), 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