LOCUS KB030668 6735647 bp DNA linear CON 19-MAR-2015 DEFINITION Pteropus alecto unplaced genomic scaffold scaffold74, whole genome shotgun sequence. ACCESSION KB030668 ALWS01000000 VERSION KB030668.1 DBLINK BioProject: PRJNA171993 BioSample: SAMN01103203 KEYWORDS WGS. SOURCE Pteropus alecto (black flying fox) ORGANISM Pteropus alecto Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus. REFERENCE 1 (bases 1 to 6735647) AUTHORS Zhang,G., Cowled,C., Shi,Z., Huang,Z., Bishop-Lilly,K.A., Fang,X., Wynne,J.W., Xiong,Z., Baker,M.L., Zhao,W., Tachedjian,M., Zhu,Y., Zhou,P., Jiang,X., Ng,J., Yang,L., Wu,L., Xiao,J., Feng,Y., Chen,Y., Sun,X., Zhang,Y., Marsh,G.A., Crameri,G., Broder,C.C., Frey,K.G., Wang,L.F. and Wang,J. TITLE Comparative analysis of bat genomes provides insight into the evolution of flight and immunity JOURNAL Science 339 (6118), 456-460 (2013) PUBMED 23258410 REFERENCE 2 (bases 1 to 6735647) AUTHORS Zhang,G., Cowled,C. and Wang,L. TITLE Direct Submission JOURNAL Submitted (06-AUG-2012) Department of Science and Technology, Beijing Genomics Institute, Shenzhen, 2nd Office Building, Beishan Industrial Zone, Beishan Road, Yantian District, Shenzhen, Guangdong 518083, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.06 Genome Coverage :: 110x Sequencing Technology :: Illumina HighSeq 2000 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6735647 /organism="Pteropus alecto" /mol_type="genomic DNA" /submitter_seqid="scaffold74" /db_xref="taxon:9402" /chromosome="Unknown" /sex="male" /tissue_type="kidney" /geo_loc_name="Australia: Anglican Church Grammer School, East Brisbane" /collection_date="Nov-2008" gene <4270..>24013 /locus_tag="PAL_GLEAN10008880" mRNA join(<4270..4536,11217..11359,22067..22156,22399..22462, 23253..23319,23407..23530,23617..23727,23872..>24013) /locus_tag="PAL_GLEAN10008880" /product="Synaptonemal complex central element protein 1" CDS join(4270..4536,11217..11359,22067..22156,22399..22462, 23253..23319,23407..23530,23617..23727,23872..24013) /locus_tag="PAL_GLEAN10008880" /codon_start=1 /product="Synaptonemal complex central element protein 1" /protein_id="ELK11778.1" /db_xref="UniProtKB/Swiss-Prot:Q32LK9" /translation="MAEPDLHKTTRDTGDTTRQRFSPRPRPSPRALGPWGSAPRSPGR EGHGAEREHSPGLAAGEQVEAGGGEGRWAVCAALGLRRLPGTHETGADTAGWWGSSRT VKQREGRGCSTPRNPQLAAVRRPQGLDHGCMVLSEKQAMLQECKERISILNSQIEEEK NRQRKLRLDFEEQLEELMSQHKDLWEFHRPEHLAQEIGALDSSKEQLLKEEKLVEAKL EDVRHRLCSQFGVKGYSDITEGLFLRSPEAASAVRLFEEENGLAQALLADAAQHHEQL QQKCQQLQQKRQRLKEELEKLGLQVPAQAQSKQEDGAGPAEAVSPGVRWQGTETAHER S" assembly_gap 13993..14131 /estimated_length=139 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 41677..41725 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<46236..>66820) /locus_tag="PAL_GLEAN10008881" mRNA complement(join(<46236..46726,47496..47810,47880..48060, 48737..48858,48998..49303,53750..54022,54494..54730, 55355..55678,59526..59669,61053..61367,63052..63232, 64784..64905,65637..65933,66694..>66820)) /locus_tag="PAL_GLEAN10008881" /product="Scavenger receptor cysteine-rich type 1 protein M130" CDS complement(join(46236..46726,47496..47810,47880..48060, 48737..48858,48998..49303,53750..54022,54494..54730, 55355..55678,59526..59669,61053..61367,63052..63232, 64784..64905,65637..65933,66694..66820)) /locus_tag="PAL_GLEAN10008881" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005044 - scavenger receptor activity [Evidence IEA]" /codon_start=1 /product="Scavenger receptor cysteine-rich type 1 protein M130" /protein_id="ELK11779.1" /db_xref="InterPro:IPR001190" /db_xref="InterPro:IPR017448" /db_xref="UniProtKB/Swiss-Prot:Q2VLG6" /translation="MVLPALHNVSCKGDEPALWECSLGAWTRSSCPHQWVVVALCAYG TFREIRLVKGRSPCAGLPEIRNANGVDRLCDLHQEEATVFCQELRCGPALQASRRDVG GRGKYMTCSGTEPTIRNCRLDNNLRQGCSSRQDAEVVCAGHTEARLVDGEHPCAGRLE VRRSLTWGSVCNADLDQATAHVLGCGRALSAPGAAHFGAGTGTIWLDELGCGGEESAL WQCPSRGWGRHDCGHKEDAGVFCAESVALRLRGGTQHCAGWLDVFYNGTWGAVCSNAL KDTSLSIVCKQLGCGEQGWLENRPVHTGVGASWVDNIECRGLRNSTLWHCPSAPWHPR SCAREEEVWITCAGPSPPLAPLPALEAGVLPMTFCLVLGTILSVVALVLGAQWCRRQG SCTGRAADSVALLKGGNHCEGLVQVQRAGRQGAVCGDSWSLDEAAVVCRQLGCGTARF APKYAVWYEETQLLLLQGVRCAGTEASLWDCALGPWGPVRGCACECYGVVQCSDSLVQ VCGLQAKETGVLCRSLGCGEALQASRPHNIQDPGDRSPKIVTCQGTESSIFNCKLDVN IWYQCNFLTEAQVVCSGHTEARLVDGEHPCAGRLEVRRGLTWGSVCDADLDQATAHVV CRELHCGSAVSRPRGAHFGPGSGPVWTEAFRCAGNESLLYQCPRGPGHQWFRLVNGSS SCEGRVELQVQGAWAPLCAAHWDLADATVLCHQLNCGSAVATPREGHFGDGDAPIWPD VFHCVGTEPYLWNCPVGTLGAPSCDPGNAATAVCSGLPDALRLRDGQSRCDGRVEVSL DGAWGRVLDDAWDLRGAGLGCGRALSAPGAAHFGAGTGTIWLDELGRGGEESALWQCP SRGWGRHDCGHKEDAGVFCAGLTDLRLQGGSQPCAGRPEVFYNGSWGGLCLTLSSATL GVLCQQLGCGPHGWPRAGTVSQRTPEALWVTSVQCRHRHDTSLWQCPSSPWDQQSCSS DMEAWVVCAGVCPVPFLSLVGPARYLLTRAPVSAEEGAVRVRGGEDGCSGRVELWRAG SWGTVCDDSWDLADAEVVCRQLGCGRAVGAPAGAAFGPGSGPVWLDEVGCGGSEASLW ACPAEPWGRTDCEHKEDAGVVCSREWAAEIALFLLCLGKRPRWWPSPGIRGCFGFC" assembly_gap 48079..48720 /estimated_length=642 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 60431..60832 /estimated_length=402 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 63395..64751 /estimated_length=1357 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 82619..82821 /estimated_length=203 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 83504..83851 /estimated_length=348 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<86775..>92900) /locus_tag="PAL_GLEAN10008882" mRNA complement(join(<86775..86905,87215..87327,87754..87835, 88011..88107,88496..88557,89970..90060,90279..90335, 90857..90937,92871..>92900)) /locus_tag="PAL_GLEAN10008882" /product="Mitochondrial GTPase 1" CDS complement(join(86775..86905,87215..87327,87754..87835, 88011..88107,88496..88557,89970..90060,90279..90335, 90857..90937,92871..92900)) /locus_tag="PAL_GLEAN10008882" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]" /codon_start=1 /product="Mitochondrial GTPase 1" /protein_id="ELK11780.1" /db_xref="InterPro:IPR002917" /db_xref="UniProtKB/Swiss-Prot:Q4PS77" /translation="MDLADLSEQQKIIQHLEREGLKNIIFTNCVKDENVKQIVPMVTA LVGSSYRYHRGENAEYCIMVIGVPNVGKSSLINSLRRQHLRKGKATRVGGEPGITRAV MSKIQVCERPPMFLLDTPGVLAPRIGSVETGLKLALCGTVLDHLVGEETLADYLLYTL NRHQLLGYVQHYGLDGACDDVVSVLKRVAVRLGKMQKVKVLTGTGDVNVIQPNYTAAA RDFLRTFRSGLLGPVMLDRDMLHTPPADP" assembly_gap 96189..96619 /estimated_length=431 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<98242..>106920) /locus_tag="PAL_GLEAN10008886" mRNA complement(join(<98242..98385,100954..101111, 101632..101744,103969..104221,105739..105938, 106640..>106920)) /locus_tag="PAL_GLEAN10008886" /product="Peroxisomal N(1)-acetyl-spermine/spermidine oxidase" CDS complement(join(98242..98385,100954..101111, 101632..101744,103969..104221,105739..105938, 106640..106920)) /locus_tag="PAL_GLEAN10008886" /codon_start=1 /product="Peroxisomal N(1)-acetyl-spermine/spermidine oxidase" /protein_id="ELK11781.1" /db_xref="InterPro:IPR002937" /db_xref="UniProtKB/Swiss-Prot:Q865R1" /translation="MANLFYSLIDQTREFLHAAETPVPSVGEYLKKELSQHAARWTED EGTRKLKLAILNSFFNLECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPGGYQGLPDH IVASLPQDVMTFNKPVKTIHWNGSFQEAVSPGETFPVLVECEDGTCFPAHHVVLTVPL GFLKERLDTFFEPPLPTEKAEAIRKVGFGTNNKIFLEFAEPFWEPGCQHIQVVWEDAS PLQDAAPAMRDTWFRKLIGFLVLPSFPSAHVLCGFIAGLESEFMETLSDAEVLQALTH VLRRATGNPQLPAPRAVLRSCWHSAPYTRGSYSYVAVGSTGDDIDLLAQPLPVGGEKP QLQILFAGEATHRMFYSTTHGALLSGWREADRLIALRDPQARPPEPRL" assembly_gap 107524..108475 /estimated_length=952 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 108708..108825 /estimated_length=118 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 111777..112238 /estimated_length=462 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 113442..113507 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <113508..>118032 /locus_tag="PAL_GLEAN10008887" mRNA join(<113508..113637,114193..114320,115087..115186, 116395..116499,116927..117046,117137..117204, 117967..>118032) /locus_tag="PAL_GLEAN10008887" /product="Enoyl-CoA hydratase, mitochondrial" CDS join(<113508..113637,114193..114320,115087..115186, 116395..116499,116927..117046,117137..117204, 117967..118032) /locus_tag="PAL_GLEAN10008887" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="Enoyl-CoA hydratase, mitochondrial" /protein_id="ELK11782.1" /db_xref="InterPro:IPR001753" /db_xref="UniProtKB/Swiss-Prot:Q58DM8" /translation="NRPKALNALCTDLVTELNEALQAFDDDPAVGAIVLTGGEKVFAA GADIKEMQSLTFQDCYSTRFLSFWDYLSQVKKPVIAAVNGYALGGGCELAMMCDIIYA GEKAQFAQPEILLGTIPGMGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI FPVETLLEEAIQCAEKIASNSKLIAVMAKEAVNAAFEMALTEGTKLEKKLFYSTFATE DRKEGMAAFVEKRKASFKDQ" gene <133558..>135576 /locus_tag="PAL_GLEAN10008888" mRNA join(<133558..133730,134705..134846,135451..>135576) /locus_tag="PAL_GLEAN10008888" /product="Neuron-specific vesicular protein calcyon" CDS join(133558..133730,134705..134846,135451..135576) /locus_tag="PAL_GLEAN10008888" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0050780 - dopamine receptor binding [Evidence IEA]; GO_process: GO:0007212 - dopamine receptor signaling pathway [Evidence IEA]" /codon_start=1 /product="Neuron-specific vesicular protein calcyon" /protein_id="ELK11783.1" /db_xref="InterPro:IPR009431" /db_xref="UniProtKB/Swiss-Prot:Q9DCA7" /translation="MVKLGCSFSGKSGKDPGDQDEATTDSVPLISPLDVSQLQPPFSD QVGRPPLPALGTKGVLLGHLFAQVVIKTQTEYELTSMDQPKKFPDLEAQKLACSHSEE GRRLPTARMIAFAMALMGCVLIMYKAIWYDQFTCPDGFLLRVRP" assembly_gap 136121..136178 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <136193..>136474 /locus_tag="PAL_GLEAN10008889" mRNA <136193..>136474 /locus_tag="PAL_GLEAN10008889" /product="Neuron-specific vesicular protein calcyon" CDS 136193..136474 /locus_tag="PAL_GLEAN10008889" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0050780 - dopamine receptor binding [Evidence IEA]; GO_process: GO:0007212 - dopamine receptor signaling pathway [Evidence IEA]" /codon_start=1 /product="Neuron-specific vesicular protein calcyon" /protein_id="ELK11784.1" /db_xref="InterPro:IPR009431" /db_xref="UniProtKB/Swiss-Prot:Q9NYX4" /translation="MCTPLTLEMYYTEMDPERHRSILAAIGAYPLSRKHGTEPPSAWV KSHRMAKEGPKAPTQAGTAATAEPPGKPVAPEEEAERKAAGSVPPPAAQ" assembly_gap 149136..149623 /estimated_length=488 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 157750..157769 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <160552..>161761 /locus_tag="PAL_GLEAN10008890" mRNA join(<160552..160765,161349..>161761) /locus_tag="PAL_GLEAN10008890" /product="Homeobox protein MSX-3" CDS join(160552..160765,161349..161761) /locus_tag="PAL_GLEAN10008890" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="Homeobox protein MSX-3" /protein_id="ELK11785.1" /db_xref="InterPro:IPR000047" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR020479" /db_xref="UniProtKB/Swiss-Prot:P70354" /translation="MAPAPLVMNPSGLRTCGGDRAEPGPLPFSVESLLEAQRGLGREP TEPREERPRRAAEPRAWFPPSVRASSPRAPSPPPCTLRKHKNNRKPRTPFTTAQLLAL ERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKLTAKPL LPAFALPLPLGAHLHGSPATFGGAAGTLPQVQGLLAAPVTAYGLYYLS" assembly_gap 166256..166346 /estimated_length=91 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 171186..171340 /estimated_length=155 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <174758..>187941 /locus_tag="PAL_GLEAN10008892" mRNA join(<174758..174907,175767..175895,176628..176792, 177822..177981,178793..179000,179204..179403, 179673..179862,180470..180615,182007..182187, 182422..182602,183537..183709,183958..184086, 184449..184569,185118..185261,185811..185939, 186382..186545,187806..>187941) /locus_tag="PAL_GLEAN10008892" /product="Gamma-tubulin complex component 2" CDS join(174758..174907,175767..175895,176628..176792, 177822..177981,178793..179000,179204..179403, 179673..179862,180470..180615,182007..182187, 182422..182602,183537..183709,183958..184086, 184449..184569,185118..185261,185811..185939, 186382..186545,187806..187941) /locus_tag="PAL_GLEAN10008892" /note="GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005815 - microtubule organizing center [Evidence IEA]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IEA]" /codon_start=1 /product="Gamma-tubulin complex component 2" /protein_id="ELK11786.1" /db_xref="InterPro:IPR007259" /db_xref="UniProtKB/Swiss-Prot:Q9BSJ2" /translation="MSEFRIHHDVNELLSLLRVRGGDGAEVYIDLLQKNRTPYVTTTV SAHSAKVKIAEFSRTPEDFLKKYDELKSKNTRNLDPLVYLLSKLAEDKETLQYLQQNA KERAELAAGSSSSFSTPAAASKMSMQELEELRKQLGSVATGSTVQQSLELTRKMLRDK LNKKNLGQRLPVFPAWVYERPTLVGDFLTGSGAGMDTAVPIGSLPLASQELAVVEDLL YVLVGVDGRCIAAQPLTGRQGRTFLVDPNLDLSIKELVNRILPVAASYSTVTRFIEEK SSFEYGQVNHALAAAMRTLVKEHLILVTQLEQLQRQGLLSLQKLWFYIQPAVRSMDIL ASLATSVDKGECVGGSTLSLLHDRSVNYTGDSQAQELCLYLTKAASVPYFEILEKWIY RGIINDPYSEFMVEEHELQKEKIREDYNDKYWDRRYTVVQRQIPSFLQKMAGKVLSTG KYLNVVRECGHDVTCPVAKEVIYTLKERAYVEQIETAFNYASRVLLDFLMEEQELVAH LRSIKRYFLMDQGDFFVHFMDLTEEELKKPVDDITPTRLEALLELALRMSTANTDPFK DDLEIDLMPHDLVTQLLRVLAIETKQEKALVHADPTELTLSGLEAFSFDYVVKWPLSL IINRKALTRYQMLFRHLFYCKHVERQLCNVWVSNKTAKQRSLHSAKWFAGAFTLRQRM LNFVQNIQYYMMFEVMEPTWHVLERNLRSASNIDDVLGHHTSFLDSCLKDCMLTNPEL LRVFSKLMSVCVMFTNCMQRFTQSMKLDGELGRPALEHGTMLGPPTEAERAEERARKE LARKHLAEHADTPQLASGFEATISKFDKNFSAHLLDLLARLSVYSTSDCEHGMASVIS RLDFNGFYTERLERLSAERSQKVAPHVPVPRGPPAPAPRVAVTAQ" assembly_gap 190148..190295 /estimated_length=148 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <191250..>200583 /locus_tag="PAL_GLEAN10008893" mRNA join(<191250..191354,192324..192400,192517..192595, 192677..192753,192849..193155,193405..193467, 193566..193634,193921..194090,194176..194257, 194530..194678,194776..194953,195224..195313, 195468..195657,195738..195819,196064..196226, 197095..197179,197701..197815,198437..198581, 198968..199033,199164..199214,200308..>200583) /locus_tag="PAL_GLEAN10008893" /product="Disintegrin and metalloproteinase domain-containing protein 8" CDS join(<191250..191354,192324..192400,192517..192595, 192677..192753,192849..193155,193405..193467, 193566..193634,193921..194090,194176..194257, 194530..194678,194776..194953,195224..195313, 195468..195657,195738..195819,196064..196226, 197095..197179,197701..197815,198437..198581, 198968..199033,199164..199214,200308..200583) /locus_tag="PAL_GLEAN10008893" /note="GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]" /codon_start=1 /product="Disintegrin and metalloproteinase domain-containing protein 8" /protein_id="ELK11787.1" /db_xref="InterPro:IPR001590" /db_xref="InterPro:IPR001762" /db_xref="InterPro:IPR002870" /db_xref="InterPro:IPR006586" /db_xref="UniProtKB/Swiss-Prot:P78325" /translation="VAAPSAPLPHVEQYEVVWPQRLPGPRTRRALSSQLGLYPESVSY VLGADGRTFTLHLRKNRDLVGAGYTETYTAANGSQVTERLHKQDHCLYQGRVEGHPHS AASLSTCDGLRSDKCPDREGPKAQMLSRLRVGPPKGTRGRGSDSEPLRPALRGFFRAG SAVHLIEPLDGGGEAGRHALYQARHLRQKAGTCGVTNTSLESILGPRTSAAFRPRNRP LSQETRYVEVYVVTDSQEFQQLGSREAVRRRVLEVINHVDKLYQELRFRVVLVGLDIW NHNDKIDVSSQASTTLDNFLAWRAQHLLGRHPHDNAQLITGVDFTGNTVGLAKVSTMC SRDSAAVSQDHSQNPVGVASTMAHEMGHNLGMDHDEDIQGCYCPESRDRGGCVMAASI GSAFPRRFSHCSQADLERFMEKPRTACLANAPDPDRLVGGPVCGNGFVERGEQCDCGQ PQDCQNRCCNATSCQLAEGAECAHGTCCHECRVKPAGTLCRPLKDACDLEEHCDGQQP ACPEDVFQENGTPCPGGYCYAGACPTLAQRCQDLWGPGAWAAVDKCYAHSVPPDCRTW TPRSSRSVNKCGVLLCEGGRKPPERGSCSVTADSALCQALVLESGSGYEPVLDGTRCG QEQVCNHKAQCHCHPGWAPPSCAARLPHAHVASRSLLLPVLLPVLLLVVLVLTVAGVV ISRKARSPIWRRASGAPAGARAPAPASGPPEPAPATRPIRPSPAPRPTASTVTPKQPP PAPPATMCSPPFPVPVYTQQAPAQLRPAPPPKPLPEQKPKQVVKPTCVPPMPPVKPGP TQVSPSVPRQSPPGSGVVAVVHSAAQLSAPGHLVTATPTASFKCESASPVSMVAVTSA VPCVHRATTSLGELRI" assembly_gap 193491..193539 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 198303..198431 /estimated_length=129 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 204277..204434 /estimated_length=158 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 206788..206826 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 207451..207703 /estimated_length=253 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 210821..211057 /estimated_length=237 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<215058..>215635) /locus_tag="PAL_GLEAN10008894" mRNA complement(join(<215058..215429,215513..>215635)) /locus_tag="PAL_GLEAN10008894" /product="Homeobox protein VENTX" CDS complement(join(215058..215429,215513..215635)) /locus_tag="PAL_GLEAN10008894" /note="GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="Homeobox protein VENTX" /protein_id="ELK11788.1" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="UniProtKB/Swiss-Prot:O95231" /translation="MRTAFAAEQLSTLESSFQHRRYLGPLERRTLAQKVRLSEVQIKT WFQNRRMKRQRQHAPELCAPGFPSPLSALGSGLQLLHPWASLPGPWALAQPPGSFWDP CQVEQLPPARCTRWAPPGPGGPGAHVSCQRPRMPFEEVGQPRSPQLGCDMPSRPTRAG CVQS" assembly_gap 217734..217773 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 219223..219337 /estimated_length=115 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<225253..>234095) /locus_tag="PAL_GLEAN10008895" mRNA complement(join(<225253..225583,232480..232637, 233378..233659,233889..>234095)) /locus_tag="PAL_GLEAN10008895" /product="Protein very KIND" CDS complement(join(225253..225583,232480..232637, 233378..233659,233889..234095)) /locus_tag="PAL_GLEAN10008895" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]" /codon_start=1 /product="Protein very KIND" /protein_id="ELK11789.1" /db_xref="InterPro:IPR001895" /db_xref="InterPro:IPR008937" /db_xref="UniProtKB/Swiss-Prot:Q0KK55" /translation="MTDGPEKAVGPRGTPCPVGRRNHVPQRSRPGGRKLPFVPLASDA AAVSCPCGLPFPAPSVPHPRSGRAELQVNLLSKFLLIAKSCYEQRNFATAMQILGGLE HLAVRQSSVSPPDGPRPPRADPVLLGTGTATPGGSPVLSFQAWRTLPAKMAEVMEELK AVEVFLKSDSLCLMEGRRSRAQPTLPSARLLAMHIQQLETGGFTMTNGAHRWSKLSRP EDHAPFHAPNSPLPDSAWEDPGSPPGRPENHAPPPSAPPSLNAALLQTLGHLGDIVAI LGPLRDQLLTLNQHVEQLRGSFDQTVSLAVGFILGSAAAERGILADPRE" assembly_gap 225648..226593 /estimated_length=946 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 228022..228108 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 230959..231107 /estimated_length=149 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<236267..>267130) /locus_tag="PAL_GLEAN10008896" mRNA complement(join(<236267..236555,236760..236842, 237312..237518,238031..238210,238290..238437, 239113..239210,239537..239651,240830..241050, 241195..241292,241361..241454,246347..246732, 247371..247540,247946..248090,248293..248909, 248982..249144,249653..249734,250213..250290, 251720..251878,253128..253189,253945..254074, 255078..255727,256813..256930,257313..257453, 263095..263153,263586..263784,267041..>267130)) /locus_tag="PAL_GLEAN10008896" /product="Protein very KIND" CDS complement(join(236267..236555,236760..236842, 237312..237518,238031..238210,238290..238437, 239113..239210,239537..239651,240830..241050, 241195..241292,241361..241454,246347..246732, 247371..247540,247946..248090,248293..248909, 248982..249144,249653..249734,250213..250290, 251720..251878,253128..253189,253945..254074, 255078..255727,256813..256930,257313..257453, 263095..263153,263586..263784,267041..267130)) /locus_tag="PAL_GLEAN10008896" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]" /codon_start=1 /product="Protein very KIND" /protein_id="ELK11790.1" /db_xref="InterPro:IPR000651" /db_xref="InterPro:IPR001895" /db_xref="InterPro:IPR008937" /db_xref="InterPro:IPR011019" /db_xref="UniProtKB/Swiss-Prot:Q76NI1" /translation="MEPAVADFFEDDKDLDFYDFEPLPTLPEDEENVSLADILSLRDS GLSEQEAWAVCLECSLSVRSVARSAIFQTLCITPDTLAFNTSGNVCFMELLSDDPEGA FVPPEFDVTGNTFEAHVYSLGATLRAALEYVAEPEPRLSRDLEALLGQMQAEDPADRP DLESIVALCEEKMQPTSSCRLCRSLAAVGRRVLSIESFGAFQDVAESTWKGRLAPKSR GPRRQPGDHGPDPGALPVSQGPEHAGTPAPTSLLPTPLRNGERPSRQGLASLVLDTPW PLQRGHPRDVQAVPRALPEGLGATALCLSTEDQLPALSTEDQLPTPEISPAGPGEASP GGQRGHASSRAQPQSRLWPVQEAEHQQEGARGAGLSGDRDTGVPGQHPAERSYPPPPE EAADADGDTEAIGAAEDEQAPKAAAEQVACPQGVPLQELVAQLARPFEDHELWALCHA CLRALCTHRQHPGTYSSFFLAPEVAEQELATEKASVYGVAAVLWTAAKFSVPRDHKLA LPRRLKTLLLHMAGRSAQERPSAAEAVKVCSSYLLQRGMDSGEILARLRESACEAHQG DTVSRHGTSVVELHPSTAPAPRSGFVQVKGDPGIMPVQGFVPGQPSRCGGNSGLPGTS TSAATHFKPIILAPDSGAARDMPAQCSGDAGGKEPAEAHTAATHLGRSDQPAPGPGSR GAAPESPGGATLRDSAQGCPCPPAQASSARPRPCNPEKPGPEAWVPPGASAGDLRPQP PGPSLQHLAQLPSMASEGPGQEREGPPPAPCSTSPASPGVSPIQERDGQAPGSRPERP RAADCRPCPSGVDARPLPRPACASLQEATRLIQEEFAFDGYLDNGLEALIMGEYIHAL KDLTYATFCGAVSEKFCDLYWGERLLQSLFRVVNGRTSLPKNVGLGGRWRGGEGGRGC SDPHSDGSASDEARSSQPAGGGRAPTPSSPSGTQPSPHRAGKERPAARSGRAPCPPAL AHADSDELSRGNLEVGFRPQKPIKAEQEPNPAAADNQQPARGASDSEAVARPARSKEG GSAVSPGLAESQSCSPGWSSAFYEAECFGTDVHNYVKELELRKACGAPHTPSPELEQQ LMMEKRHYGKTLDFYRKLVQKEKRARGSEVKTMLSRLRGQLEEMQSRAQFLGLAKRYL QVLHAEQWGLEPCALPMVVSVAAAHCGTPDFSPLDESSSLIFYDVSKQPRAGRHKEAR VLQAGTPLGLMAFLYSRRQNALWGAFAGQPGLLAAWSLAKCGHSVLSPQRPWGDQGYV QQFLYTFRYFCTPQDFLLFLLDRMDSTLARAQQDPSSTFSKIYKRSFCLLQAWVEDCH AVDFARNADLLARIKDFISSKILPLDGSAERLLGLLEVGTDRRAEGAPRSTDLGDPRE AEEDVRPLNALCRRLSEDGIARKSFPWRLSRGHGLALPHHKEHQYSIASALPKPCFFE DFCGPYAKASVKGPCFLTEYSAHQLFTQLTLLQQELFQKCHPVHFLNSRALGVTDQSA AIPKATSESLPAKTCSLFLPNYVQDKYLLQLLRSADDVSTWVAAEIVTSHTSKVGSSV ALSSERGVGSDGTGPVAPCGVGFPQTPTPDKGKQRHGRWQR" assembly_gap 239007..239041 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 243379..243890 /estimated_length=512 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 253239..253317 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 258042..258180 /estimated_length=139 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 258551..258580 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 267143..267688 /estimated_length=546 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<271558..>286554) /locus_tag="PAL_GLEAN10008898" mRNA complement(join(<271558..272137,272326..272766, 273921..274019,278283..278428,281983..282106, 283094..283221,286111..>286554)) /locus_tag="PAL_GLEAN10008898" /product="Putative G-protein coupled receptor 123" CDS complement(join(271558..272137,272326..272766, 273921..274019,278283..278428,281983..282106, 283094..283221,286111..286554)) /locus_tag="PAL_GLEAN10008898" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004888 - transmembrane receptor activity [Evidence IEA]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO_process: GO:0007166 - cell surface receptor linked signaling pathway [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]" /codon_start=1 /product="Putative G-protein coupled receptor 123" /protein_id="ELK11791.1" /db_xref="InterPro:IPR000832" /db_xref="InterPro:IPR017981" /db_xref="UniProtKB/Swiss-Prot:Q86SQ6" /translation="MCSPQWHKNRAVASLQGGPGQGGGSGSRAGALVETPAESLCAAD SGSQECRQATPAGARGQDGARGQARLAELGAETRRVRHTSPPQRSTPHSESNEGIKPP ERRGGHGAGTRKPGATGERQSPVTASRAGVQEAQGVGPVDLGPELGDLKTVLPLPQHP GELLHPVVYACTAVMLLCLLTSVVTYLVHQRAIRISRRGRHALLNLCLHAALTFTAFA GGINRTESPTLCQAVGIVLHYSTLSTMLWIAVTARNIYQQVTRKAPPCPGADQPPSAQ QPLLRFYLISGGVPLIICGVTAATNIRNYGTEDEDSAYCWMAWEPSLGACYGPAAFIA LVTCVYFLGTYVQLRRHPERRYELRERPEEQQRLAGLGSQPXXXXXASLLQNEHPLKA QLRAAAFTLFLFAATWAFGALAVSQGHMLDMVFSCLYGAFCVTLGLFVLIHHCAKRDD VWRCWWRRCPALQATQSHVSCLSPATPCCAKMHCEQLAEDATHAHVHAEGDLGPGPHL HRCLQGRTKPPYFSQHRAAAAEREYAYHIPSSLDGSLRSSRTDSPPSSLESPAGLHPL ACCAQGDPFPLVSQPEGGDASPTLYGCPPRLGREAARGPAHFEMLRRTQSLPSGGPGQ NGLLQGTMPYGADSTGNIRTGPWRNETTV" assembly_gap 272170..272325 /estimated_length=156 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 272570..272583 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 278452..278522 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 280373..280467 /estimated_length=95 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 284603..284617 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 288395..288462 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 297206..297276 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 297763..297984 /estimated_length=222 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 324185..325466 /estimated_length=1282 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 325641..375639 /locus_tag="PAL_GLEAN10008899" /pseudo assembly_gap 338482..338532 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 345957..346033 /estimated_length=77 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 346315..346360 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 355370..355392 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 357485..358556 /estimated_length=1072 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 360504..360532 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 364156..364166 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 365050..365081 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 365811..365824 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 370508..370541 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 376901..377248 /estimated_length=348 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <377263..>390660 /locus_tag="PAL_GLEAN10008901" mRNA join(<377263..377325,377692..377862,380211..380290, 380641..380717,381514..381587,381974..382095, 382540..382619,383784..383939,386337..386496, 387334..387446,388414..388495,390180..>390660) /locus_tag="PAL_GLEAN10008901" /product="hypothetical protein" CDS join(377263..377325,377692..377862,380211..380290, 380641..380717,381514..381587,381974..382095, 382540..382619,383784..383939,386337..386496, 387334..387446,388414..388495,390180..390660) /locus_tag="PAL_GLEAN10008901" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11792.1" /db_xref="UniProtKB/Swiss-Prot:Q8IYW2" /translation="MVECVGALDAAATCQFLALAQSCSASEMMRGVLLTATANTGSSQ LAALLQLEHRLRQQTQTSTSLFASAEQRLAAISKVTEQHFNLLGEVPPSCRLLFLHHS PDRTHLYGAAYERPRPIAAAKGRVLQVGAGAQQCREQMQAEVYSEDVALSSGLGSAGT RFERERPSAQTLGDVLQDLETYLRPLSALLSCPEARTQSPMVLADVGKAKGRDKERKP SLAQAEPEAADVVLVVDRHLLELPLEGLAVFRGETTSSVSREFSLQMLCSRLRRETGS VVVDPYEEAQAAGAGARALSPVPVPVLGAHTPSGAGFGTPSSECVGGGAVPVQAEWEQ LLGSCEGFFFYGMESFLSHVSVESLAAANLAECQVMVLLDRARSYDSLQRQMAASSGK RRVSRDLQGRADTLVTAAQPRVAPHESQPGAVRAATPDHRVMPRDPSRPPPPLPQLCP FCPGAPCLGLHHTGPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXALLGWETLLQGFGLHQGPPRSLGTRLQLSGGGVWVPTWAVST" assembly_gap 385548..385800 /estimated_length=253 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 390400..390531 /estimated_length=132 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 390816..391231 /estimated_length=416 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 392807..392885 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 393957..395019 /estimated_length=1063 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 397284..397381 /estimated_length=98 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 399369..399491 /estimated_length=123 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 402168..402208 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 402506..403662 /estimated_length=1157 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <403702..>404856 /locus_tag="PAL_GLEAN10008902" mRNA join(<403702..403866,404818..>404856) /locus_tag="PAL_GLEAN10008902" /product="Homeobox protein Nkx-6.2" CDS join(403702..403866,404818..404856) /locus_tag="PAL_GLEAN10008902" /codon_start=1 /product="Homeobox protein Nkx-6.2" /protein_id="ELK11793.1" /db_xref="UniProtKB/Swiss-Prot:Q9C056" /translation="MASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRL LKKHKPSNLALGWPVATTPVVSR" assembly_gap 403897..404782 /estimated_length=886 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 406106..406693 /estimated_length=588 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<406921..>555947) /locus_tag="PAL_GLEAN10008903" mRNA complement(join(<406921..407001,407744..407812, 410072..410183,418688..418761,424360..424431, 424647..424742,436018..436102,446527..446646, 448047..448099,452117..452220,459457..459520, 489863..489950,493214..493314,555855..>555947)) /locus_tag="PAL_GLEAN10008903" /product="Type I inositol-1,4,5-trisphosphate 5-phosphatase" CDS complement(join(406921..407001,407744..407812, 410072..410183,418688..418761,424360..424431, 424647..424742,436018..436102,446527..446646, 448047..448099,452117..452220,459457..459520, 489863..489950,493214..493314,555855..555947)) /locus_tag="PAL_GLEAN10008903" /note="GO_function: GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence IEA]" /codon_start=1 /product="Type I inositol-1,4,5-trisphosphate 5-phosphatase" /protein_id="ELK11794.1" /db_xref="InterPro:IPR000300" /db_xref="InterPro:IPR005135" /db_xref="UniProtKB/Swiss-Prot:Q14642" /translation="MRVWSSSVSVFKLHSSNVREVGYPGMKKLPDVVHSHKPHFVALH CQEFGGKNYEASMSHVDTFVKELLSSDAMKEFNRARVYLDENYRSQEQFTALGSFYFL HESLKNIYQFDFKAKKYRKVTGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFVR TRWSVGDCAFDLVNIHLFHDASNLVAWETSPSVYAGIRHKALGYVLDRIVDPRFEKVA YFVFGDFNFRLDAKSVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRRVMLQLEKK LFDYPDQGVFREGSTALLEFDKELSVFKDRLYELDISFPPSYPYSEDASQGQQYMNTR CPAWCDRVLMSLSAKELVLRSESEEKVVTYDHIGPNVCMGDHKPVFLAFRVAPGAGKA HAHVHKCCVVQ" assembly_gap 416588..416650 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 420228..420327 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 433841..434423 /estimated_length=583 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 442138..442239 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 446331..446487 /estimated_length=157 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 456281..456332 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 456946..456965 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 468742..468806 /estimated_length=65 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 480412..480707 /estimated_length=296 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 481440..481484 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 482491..482655 /estimated_length=165 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 487529..487551 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 491853..492008 /estimated_length=156 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 492761..492817 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 493419..493471 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 497248..497265 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 500293..500345 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 501943..502016 /estimated_length=74 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 511669..514423 /estimated_length=2755 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 516740..516797 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 517420..517624 /estimated_length=205 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 521792..521993 /estimated_length=202 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 527243..527414 /estimated_length=172 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 529986..530103 /estimated_length=118 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 536053..536123 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 536624..536657 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 541950..541959 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 547428..547471 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 547672..548293 /estimated_length=622 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 570567..570616 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 572879..573532 /estimated_length=654 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 583677..583693 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<592409..>593059) /locus_tag="PAL_GLEAN10008912" mRNA complement(<592409..>593059) /locus_tag="PAL_GLEAN10008912" /product="Translation initiation factor IF-2" CDS complement(592409..593059) /locus_tag="PAL_GLEAN10008912" /codon_start=1 /product="Translation initiation factor IF-2" /protein_id="ELK11795.1" /db_xref="UniProtKB/Swiss-Prot:A1BDF1" /translation="MAAATVAPVGTVPAVYAVPAVYTVPAVCTVPTVYTVPAVCTVRT VPTVYAVPAVCTVPAVCTLPAVYAVPAVYTVPAVCTVPTVYTVPAVCTVRTVPTVYAV PAVYTVPAVSTMPAVCTVLAVCTLPTVYAVPAVCVVPAVCTVRTVPTVCPVPAVCAMP AVCTDLRCRREESRPTLCSQAVALWEIKALGPWPAPSCPVPSAWGWTDTPSVLRAA" assembly_gap 593617..593681 /estimated_length=65 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 596708..596914 /estimated_length=207 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<611807..>630486) /locus_tag="PAL_GLEAN10008915" mRNA complement(join(<611807..612323,613050..613436, 627455..627831,630235..>630486)) /locus_tag="PAL_GLEAN10008915" /product="PWWP domain-containing protein 2B" CDS complement(join(611807..612323,613050..613436, 627455..627831,630235..630486)) /locus_tag="PAL_GLEAN10008915" /codon_start=1 /product="PWWP domain-containing protein 2B" /protein_id="ELK11796.1" /db_xref="InterPro:IPR000313" /db_xref="UniProtKB/Swiss-Prot:Q6NUJ5" /translation="MHLKFVKGRGRQPPLPGRGPGGAGGLRVPLSPRIHDACFLSTFC GGELEEKVKQHIRRTHEQRKRRRGAAPLEGIRKATEDPEINLKKFVETDDPVSRVPAG AFLGLREAPGAPFPSSEVISCVRGDVGTQLILTVWSADSLCFLRLQRLSRIDRERIQP GGHRLHARGVCLPVLVTMWARPCSPPPPLLRPQNDRRFRRLIDFRAGAGGSGLFGLPP STPLPQAEHTPVNGCQGSAPAEGDTEAMQLGTVPPPPACPEPPQPLAPPPPAGSLAPF PPYFEGAPFPPPLWLRNTYRQWVPQPPPRTIKRTRRRLSRNRDPGRLALSPICLRPRR VLCEKTDCASESVWGSDSLDESKSSSSDTCDLSSGDGMPGPSSSKDVGQTVPPLTVRL HTQSVSRCITEDGRTVAVGDIVWGKIHGFPWWPARVLDISLSQKEDGEPSWQEAKVSW FGSPTTSFLSTSKLSPFSEFFKLRFNRKKKGLYRKAITEAASAARLVGPGVRELLTQC AT" assembly_gap 612466..613041 /estimated_length=576 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 617476..619122 /estimated_length=1647 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 621931..622655 /estimated_length=725 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 631292..631303 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 631534..631599 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 631870..631887 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 632869..632929 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 635380..635802 /estimated_length=423 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<636631..>646178) /locus_tag="PAL_GLEAN10008916" mRNA complement(join(<636631..637136,638002..638154, 640936..640994,643419..643549,645984..>646178)) /locus_tag="PAL_GLEAN10008916" /product="Leucine-rich repeat-containing protein 27" CDS complement(join(636631..637136,638002..638154, 640936..640994,643419..643549,645984..646178)) /locus_tag="PAL_GLEAN10008916" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Leucine-rich repeat-containing protein 27" /protein_id="ELK11797.1" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR003591" /db_xref="UniProtKB/Swiss-Prot:Q9C0I9" /translation="MEGDAPGAAGEGGGSGPARSTATASPAEDIRGRINGVLSSASPI LDLSQSGLRHLGEIFRIPTLKQLHLQRNALRALPADFFQLLPNLTWLDLRHNRVTALP PGIGAHRYLKTLLLERNPIKTLPVELGGVATLTALSLRHCPLEFPPPPVVQQGLGAVL AFLRFCAVQRAPSGEPAPPGGKRSHGPPLLLGGPQESRPAGGAHSPEPRGTTGHLPPA ETLDLSVPRPSAEPPEEWPSTEEIRRFWTLRQEIVGLEQARILTNQLLAAELPPNLRE ALHTQKAARPVLPRVLRCARPGCLPRSLPSSSLCERPVRLLVTTLPPLTTRHSQPGVG LAASNSGPKEEVA" assembly_gap 639603..639987 /estimated_length=385 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 643018..643059 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 643838..644605 /estimated_length=768 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 647318..647611 /estimated_length=294 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 653622..653992 /estimated_length=371 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 656701..656766 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 664373..664606 /estimated_length=234 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 671001..671151 /estimated_length=151 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 672625..672649 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 673999..674268 /estimated_length=270 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <677503..>699120 /locus_tag="PAL_GLEAN10008918" mRNA join(<677503..677905,687337..687392,690307..690458, 692967..693140,694047..694084,694173..694262, 694572..694675,695193..695309,696515..696640, 696755..696886,698989..>699120) /locus_tag="PAL_GLEAN10008918" /product="Serine/threonine-protein kinase 32C" CDS join(677503..677905,687337..687392,690307..690458, 692967..693140,694047..694084,694173..694262, 694572..694675,695193..695309,696515..696640, 696755..696886,698989..699120) /locus_tag="PAL_GLEAN10008918" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]" /codon_start=1 /product="Serine/threonine-protein kinase 32C" /protein_id="ELK11798.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:Q86UX6" /translation="MPTDVSAGPRCSWLRWALAAWSFGVPGNLVVGGHVREEVSRMRK KGCETLRAWLSRDVPVLRAPRAACVSPFSRGAECGLRKARTGRRCRTGHMGRACSTPA LRGPFPLAELTFPTVGAGSSLWGRHPTPALKDLNFDHFQILRAIGKGSFGKVCIVQKR DTEKMYAMKYMNKQQCIERDAVRHVFRELEILQEIEHVFLVNLWYSFQDEEDMFMVVD LQLGGDLRYHLQQNVQFSEDTVRLYICELALALDYLRSQHIIHRDVKPDNILLDEQGH AHLTDFNIATIIKDGERATALAGTKPYMAPEIFQSFVNGGTGYSFEVDWWSVGVMAYE LLRGWRPYDIHSGNAVESLVQLFSTASVQYVPSWSKDMVALLRKLLAVSPEHRVSSLQ DMRAAPSLAGVLWDHLGEKKVEPGFVPNKGRLHCDPTFELEEMILESRPLHKKKKRLA KSRSRDSSRDSAQSDPTSQPLPAPEAGRVDGEASADGEEVRPSLPMCGPICPSAGSG" assembly_gap 692414..692585 /estimated_length=172 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<701809..>723669) /locus_tag="PAL_GLEAN10008919" mRNA complement(join(<701809..701900,701981..702146, 703486..703665,703966..704136,704729..704870, 705173..705329,706018..706138,706479..706547, 707736..707816,707900..707961,708659..708823, 710673..710857,711352..711420,721535..721641, 723415..>723669)) /locus_tag="PAL_GLEAN10008919" /product="Dihydropyrimidinase-related protein 4" CDS complement(join(701809..701900,701981..702146, 703486..703665,703966..704136,704729..704870, 705173..705329,706018..706138,706479..706547, 707736..707816,707900..707961,708659..708823, 710673..710857,711352..711420,721535..721641, 723415..723669)) /locus_tag="PAL_GLEAN10008919" /note="GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]" /codon_start=1 /product="Dihydropyrimidinase-related protein 4" /protein_id="ELK11799.1" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR011059" /db_xref="UniProtKB/Swiss-Prot:O35098" /translation="MAAASHAASRLALQRHCACGSESAALRGTAGGLCGCVSACRFVL ACPVRLCVSRVPVRVGACRCVSACHCVPVRQYVSVRVECVPALDTETGSGTQLCSGEV SPAGAFGLSGLGLSRDCLAGGKVVNDDQSFYADVYVEDGLIKQIGENLVVPGDIRTID AHGLMVLPGGVDVHTRLQMPVLGMTPADDFCQGTKAALAGGTTMILDHVCPDAGVSLL AAFEQWRERADSGACCDYSLHVDVPRWHESIREELEALVRDKGVNSFLVFMAYKDRCQ CTDGQMYEVFSIIRDLGAVAQVHAENGDIVEEEQKRLLELGIAGPEGHVLSRPEEVEA EAVYRAVTVAKQANCPLYVTKVMSKSAADVIAQARRRGVVVFGEPITASLGTDGSHYW SQNWAKAAAFVTSPPINPDPTTADHLSSLLSSGDLQVTGSAHCTFTTAQKAVGKDDFT LIPEGTNGVEERMSVVWEKCVASGKMDENDFVAVTSTNAAKIFNFYPRKGRVAVGSDA DLVIWNPKATKIISAKSHNLNVEYNVFEGVECRGAPVVVISQGRVVLEDGNLSVTPGA GRFVPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVMVPAKTGGGAQARASCA GKIPVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS" assembly_gap 714294..714305 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 714645..714681 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 714901..716195 /estimated_length=1295 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 719987..720012 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<729053..>729343) /locus_tag="PAL_GLEAN10008920" mRNA complement(<729053..>729343) /locus_tag="PAL_GLEAN10008920" /product="hypothetical protein" CDS complement(729053..729343) /locus_tag="PAL_GLEAN10008920" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11800.1" /translation="MTECGLRTQGPPAPGNPDRFTWTPEDRVPVTPWGGDGDAVPPLL GPRALTDGHVTLPSRAHDAVPAWAQMERADRTDASSPGVSLRARDVNARALR" assembly_gap 729491..729543 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 730489..730567 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<733029..>760365) /locus_tag="PAL_GLEAN10008921" mRNA complement(join(<733029..733280,734126..734203, 734291..734359,735141..735206,738249..738302, 738397..738495,738725..738823,739181..739243, 739514..739597,741292..741420,742313..742441, 743801..743920,744627..744662,745816..745947, 746631..746777,747310..747429,748784..748999, 760231..>760365)) /locus_tag="PAL_GLEAN10008921" /product="Janus kinase and microtubule-interacting protein 3" CDS complement(join(733029..733280,734126..734203, 734291..734359,735141..735206,738249..738302, 738397..738495,738725..738823,739181..739243, 739514..739597,741292..741420,742313..742441, 743801..743920,744627..744662,745816..745947, 746631..746777,747310..747429,748784..748999, 760231..760365)) /locus_tag="PAL_GLEAN10008921" /codon_start=1 /product="Janus kinase and microtubule-interacting protein 3" /protein_id="ELK11801.1" /db_xref="UniProtKB/Swiss-Prot:Q5DTN8" /translation="MSKKGTGGRGKGDKADVLAGLQAANEELRAKLTDIQIELQQEKS KMEEMKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVKEADRHLGSPRRELP YASGAGDASDHPGSPEQQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKR LREAESQYKPLLDKNKRLTRKNEDLSHTLRRMENKLKFVTQENLEMRQRAEIIRRPSS LNDLDQSQDEREADFLKLQILEQQNLIDELSKTLETAGYVKSVLRSNPTELPLYSEGV SHGCSQERDKLLRYRKQRKKMAKLPKPVVVETFFGYDEEASLESDGSSISYQTDRTDQ TPCTPEDDLEEGMAKEETELRFRQLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQ LQAEAHRAQTRIEDLERALAEQGQDMKWIEEKQALYRRNQELVEKIKQMETEEARLKH EVQDGKDQNELLEFRILELEERERKSPAINFHHTPFVDGKSPLQAYCEAEGVTDILVT ELMKKLDILGDNANLTNEEQVVVIQARTVLTLAEKWLQQIEETESALQRKMVDLESEK ELFSKQKGYLHEELDYRKQALDQAHKHILELEAMLFDALQQDAGAKVAEVLSEEEREK LRVAVEQWKRQVMSELRERDAQILRERMELLQLAQQVRAWGRDCSLRGRPR" assembly_gap 733327..733383 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 736825..737430 /estimated_length=606 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 738651..738684 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 739845..739871 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 750814..750888 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 754351..755794 /estimated_length=1444 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 762123..762700 /estimated_length=578 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 763278..763855 /estimated_length=578 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 768981..769073 /estimated_length=93 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 777401..777709 /estimated_length=309 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 780205..780248 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 782406..783512 /estimated_length=1107 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 786546..786604 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 787103..787405 /estimated_length=303 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 790249..790435 /estimated_length=187 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 792862..792978 /estimated_length=117 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 798473..798730 /estimated_length=258 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 806799..807834 /estimated_length=1036 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <813118..>817435 /locus_tag="PAL_GLEAN10008923" mRNA join(<813118..813343,814274..814421,814779..814863, 815862..815968,816045..816194,817390..>817435) /locus_tag="PAL_GLEAN10008923" /product="BCL2/adenovirus E1B 19 kDa protein-interacting protein 3" CDS join(813118..813343,814274..814421,814779..814863, 815862..815968,816045..816194,817390..817435) /locus_tag="PAL_GLEAN10008923" /note="GO_component: GO:0005740 - mitochondrial envelope [Evidence IEA]; GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_process: GO:0043065 - positive regulation of apoptosis [Evidence IEA]" /codon_start=1 /product="BCL2/adenovirus E1B 19 kDa protein-interacting protein 3" /protein_id="ELK11802.1" /db_xref="InterPro:IPR010548" /db_xref="UniProtKB/Swiss-Prot:Q12983" /translation="MVAACTVRFWTQRQRCSPHGWTHTPGGPSRAAVGSLPGAGPSQP LSPQLRCCSRRVGCAWQHLHAISGEGSRLSFCSWVELHFSNGSASSAPASVSMYNGDM EKILLDAQHESGRSSSKSSHCDSPPRSQTPQDTNRVSEADSHSIGEKNSSQSEEDYLE RRKEVESILKKNSDWIWDWSSRPENVPPKEFLLRRPRRTAALSMRNTSVMKRGGVCSA EFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF" assembly_gap 822752..822822 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 835027..835092 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 841158..841833 /estimated_length=676 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <846701..>993498 /locus_tag="PAL_GLEAN10008925" mRNA join(<846701..846811,992980..>993498) /locus_tag="PAL_GLEAN10008925" /product="hypothetical protein" CDS join(846701..846811,992980..993498) /locus_tag="PAL_GLEAN10008925" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11803.1" /translation="MLAFRQHRGLSSRAGGTFPVDNPLPTQEDGLDLELHQWAIRKMF SAGRREAPRPAHATAAARVSGAVRSPGESEAGHRLWGPRADVPRPCSPRCERHLRCQR SPPHLVVVARTPKPGQEACAGRLCLLGASSLDEPIPDSPQANAAGEGPPEPRAAAAVA SQLLEQFPNPDQTHQTINTLTLEAAVAKETRGDGQRGTGDVAPALFFTT" assembly_gap 847039..847311 /estimated_length=273 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 847756..848096 /estimated_length=341 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 852808..852941 /estimated_length=134 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 855276..855286 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 859152..862487 /estimated_length=3336 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 863744..863760 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 868763..868881 /estimated_length=119 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 879388..880084 /estimated_length=697 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 880659..881156 /estimated_length=498 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 884636..884816 /estimated_length=181 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 885634..886283 /estimated_length=650 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 890583..890854 /estimated_length=272 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 892367..893486 /estimated_length=1120 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 895735..896216 /estimated_length=482 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 909772..909851 /estimated_length=80 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 912246..912561 /estimated_length=316 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 919598..921236 /estimated_length=1639 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 927156..930488 /estimated_length=3333 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 933124..933178 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 945449..945806 /estimated_length=358 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 948715..948728 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 951142..951195 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 956774..957214 /estimated_length=441 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 959408..959512 /estimated_length=105 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 959885..960185 /estimated_length=301 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 962409..963206 /estimated_length=798 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 966607..967424 /estimated_length=818 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 970244..970326 /estimated_length=83 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 999117..999251 /estimated_length=135 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1001060..1001956 /estimated_length=897 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1002622..1002702 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1002984..1003217 /estimated_length=234 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1020216..1020225 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1029754..1029766 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1030724..1030764 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1032447..1032496 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1036701..1037651 /estimated_length=951 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1047643..1047697 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1057977..1058259 /estimated_length=283 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1061163..1061176 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1062618..1062750 /estimated_length=133 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1065155..1066221 /estimated_length=1067 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1070720..1070802 /estimated_length=83 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1074261..1075188 /estimated_length=928 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1077447..1077698 /estimated_length=252 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1077953..1082293 /estimated_length=4341 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1082499..1082655 /estimated_length=157 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1085318..1087418 /estimated_length=2101 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1092469..1095157 /estimated_length=2689 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1097991..1102769 /estimated_length=4779 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1106243..1106401 /estimated_length=159 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1115826..1115882 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1116625..1116739 /estimated_length=115 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1119414..1119542 /estimated_length=129 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1122194..1122394 /estimated_length=201 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1134021..1134766 /estimated_length=746 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1146699..1147535 /estimated_length=837 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1148968..>1164791 /locus_tag="PAL_GLEAN10008927" mRNA join(<1148968..1149135,1157882..1157971,1162428..1162546, 1164635..>1164791) /locus_tag="PAL_GLEAN10008927" /product="Transcription elongation regulator 1-like protein" CDS join(1148968..1149135,1157882..1157971,1162428..1162546, 1164635..1164791) /locus_tag="PAL_GLEAN10008927" /codon_start=1 /product="Transcription elongation regulator 1-like protein" /protein_id="ELK11804.1" /db_xref="InterPro:IPR002713" /db_xref="UniProtKB/Swiss-Prot:Q3B807" /translation="MLRLTLSLFLRTEGHLSPGPEEAEREDEDTKTPPPQTLLPLEER ATHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRVREEYKE KRSKLLLAREGFRKLLEESRVSPRTTFKEFAEKYGHDQRFRLVQKRKDQEHFFNQFIL ILKKRDKENRLRLRKMR" assembly_gap 1150322..1150340 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1158576..1159176 /estimated_length=601 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1160463..1160952 /estimated_length=490 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1162863..1163206 /estimated_length=344 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1169182..1169234 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1171603..1171820 /estimated_length=218 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1179091..1179215 /estimated_length=125 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1182960..1183214 /estimated_length=255 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1185033..1185085 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1189623..1189790 /estimated_length=168 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1195073..1195168 /estimated_length=96 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1198014..1198373 /estimated_length=360 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1198621..1198724 /estimated_length=104 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1199320..1199449 /estimated_length=130 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1200443..1200495 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1204193..1204502 /estimated_length=310 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1216985..1217336 /estimated_length=352 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1219230..1219389 /estimated_length=160 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1236176..1236472 /estimated_length=297 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1247044..1247730 /estimated_length=687 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1258496..1258666 /estimated_length=171 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1263558..1263779 /estimated_length=222 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1270875..1271019 /estimated_length=145 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1272440..1272838 /estimated_length=399 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1276339..1279594 /estimated_length=3256 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1299395..1299434 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1306320..1306336 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1314792..1315070 /estimated_length=279 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1317598..1318183 /estimated_length=586 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1326918..1326937 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1328737..1328764 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1332690..1333152 /estimated_length=463 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1337409..1337504 /estimated_length=96 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1346852..1347130 /estimated_length=279 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1354220..1354264 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1354893..1355141 /estimated_length=249 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1366179..1366191 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1366696..1366706 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1384258..1384490 /estimated_length=233 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1386151..1386175 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1392682..1392747 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1395440..1395515 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1405001..1405102 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1423998..1424016 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1426459..1426505 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1428663..1428958 /estimated_length=296 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1429464..1429498 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1434923..1435496 /estimated_length=574 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1440761..1440782 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<1442447..>1465601) /locus_tag="PAL_GLEAN10008931" mRNA complement(join(<1442447..1442500,1445526..1445618, 1445704..1445743,1448190..1448242,1449805..1449862, 1451911..1451972,1452209..1452381,1457083..1457284, 1458107..1458181,1465545..>1465601)) /locus_tag="PAL_GLEAN10008931" /product="Glutaredoxin-3" CDS complement(join(1442447..1442500,1445526..1445618, 1445704..1445743,1448190..1448242,1449805..1449862, 1451911..1451972,1452209..1452381,1457083..1457284, 1458107..1458181,1465545..1465601)) /locus_tag="PAL_GLEAN10008931" /note="GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]" /codon_start=1 /product="Glutaredoxin-3" /protein_id="ELK11805.1" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR012336" /db_xref="InterPro:IPR013766" /db_xref="UniProtKB/Swiss-Prot:Q9JLZ1" /translation="MNGVMAELAREHPQVSFVKLEAEAVPEVSEKYEISSVPTFLFFK NSQKIDRLDGAHAPELTKKVQRHASVGSLPPSGNEHPKEDLSLRLKKLTHAAPCMLFM KGTPQEPRCGFSKQMVEILNKHNIQFSSFDILSDEEVRQGLKTYSNWPTYPQLYVSGE LIGGLDIIKELEASEELDTVCPKAPKLEERLKVLTNKASVMLFMKGSKQEAKCGFSKQ ILEILNSTGVEYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGGLDIVKELKEN GELLPVLKGGNE" assembly_gap 1446296..1446347 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1466908..1467055 /estimated_length=148 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1470321..1470785 /estimated_length=465 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1483655..>1496186 /locus_tag="PAL_GLEAN10008932" mRNA join(<1483655..1483723,1493444..1493617,1493725..1493802, 1495986..>1496186) /locus_tag="PAL_GLEAN10008932" /product="hypothetical protein" CDS join(1483655..1483723,1493444..1493617,1493725..1493802, 1495986..1496186) /locus_tag="PAL_GLEAN10008932" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11806.1" /translation="MDTLALGRWRRRRPEELQVPGDAKRARRSPDAAAQDWGRPQVTA SGPTTWASRGSPGPEAQPGGRLPVGRPDANQGPRSAGAPGSGGSGGSGGSGGRACRRC AAGESCKVLPSHAGKRFSSHGLTLVSPAGTSVAALAVAAAITTAVAAALVSSRGCRKA RPVVPVVVEGTSS" assembly_gap 1490841..1490873 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1499883..1499919 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1529062..1529201 /estimated_length=140 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1535764..1535849 /estimated_length=86 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1536134..1536144 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1546444..1547122 /estimated_length=679 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1547817..1548366 /estimated_length=550 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1551318..1551368 /estimated_length=51 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1553914..>1631271 /locus_tag="PAL_GLEAN10008935" mRNA join(<1553914..1554141,1556254..1556317,1557032..1557087, 1560020..1560093,1561690..1561758,1631064..>1631271) /locus_tag="PAL_GLEAN10008935" /product="Transcription factor COE3" CDS join(1553914..1554141,1556254..1556317,1557032..1557087, 1560020..1560093,1561690..1561758,1631064..1631271) /locus_tag="PAL_GLEAN10008935" /codon_start=1 /product="Transcription factor COE3" /protein_id="ELK11807.1" /db_xref="UniProtKB/Swiss-Prot:Q9H4W6" /translation="MPRRRPLGGQCAWAESLPQEPGRRAHALPAPRCPPDSWKPGREA ARRALTRARRHQGQDPGARGVRSGLRAAGAGEEPNNEKTNNGIHYKLQLLYSNGVRTE QDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPV IIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVRLPRTRPRAASRRPSADVARPLVLRG FGAARTGALAKLML" assembly_gap 1554803..1556056 /estimated_length=1254 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1558757..1558837 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1559040..1559893 /estimated_length=854 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1566848..1566858 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1572938..1572970 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1578861..1579603 /estimated_length=743 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1583276..1583428 /estimated_length=153 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1612554..1612580 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1613158..1613252 /estimated_length=95 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1617537..1617685 /estimated_length=149 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1621206..1621582 /estimated_length=377 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1622262..1622332 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1624454..1624488 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1634225..1634290 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1634297..>1666002 /locus_tag="PAL_GLEAN10008936" mRNA join(<1634297..1634501,1639870..1640000,1640428..1640554, 1657707..1657795,1663722..1663899,1664816..>1666002) /locus_tag="PAL_GLEAN10008936" /product="Transcription factor COE3" CDS join(1634297..1634501,1639870..1640000,1640428..1640554, 1657707..1657795,1663722..1663899,1664816..1666002) /locus_tag="PAL_GLEAN10008936" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Transcription factor COE3" /protein_id="ELK11808.1" /db_xref="InterPro:IPR002909" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/Swiss-Prot:O08791" /translation="MGACRRLGAPYGQRGALLQPRFHIRFVPQVVVSTTVNVDGHVLA VSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQV VFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPT IDYGFQRLQKVIPRHPGDPERLPKEIILKRAADIAEALYSVPRNHNQIPALGSTPAHS GMMGVNSFSSQLAVNVSETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYSTVSTSM NGYGSGAMANLGVPGSPGFLNGSSANSPYGSKCLFLSHVITQLHFHCEVKCVRCSGVL WCELLDRRKGGSEAGRPRDHGPLTCAGPRATPVXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXAPRVPASPSPLRQSRESLHGGSGTGAARERSG GAVSAAGSVLPLSRTGLHGQSSRSPRGQEAATWPAXXXXXXXXXXXXXXASEPEGPGG PRPSEGAACARRCL" assembly_gap 1634944..1634982 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1638971..1639023 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1661510..1662231 /estimated_length=722 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1663033..1663404 /estimated_length=372 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1665188..1665686 /estimated_length=499 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1665890..1665929 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1678690..1678718 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1687634..1687690 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1688230..1688349 /estimated_length=120 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1695736..1695888 /estimated_length=153 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1703172..1703194 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1708978..1709001 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1716455..1716627 /estimated_length=173 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1727923..1728003 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1734672..1734685 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1738684..1739878 /estimated_length=1195 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1751047..1751148 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1761084..1761253 /estimated_length=170 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1769154..1770397 /estimated_length=1244 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1776347..1776409 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1778030..1778074 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1781369..1781529 /estimated_length=161 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1795443..1796343 /estimated_length=901 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1819444..1819506 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1820622..1820703 /estimated_length=82 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1839139..1839148 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1878532..1878630 /estimated_length=99 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1878901..1879241 /estimated_length=341 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1888969..1889000 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1894217..1894261 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <1898267..>1899142 /locus_tag="PAL_GLEAN10008942" mRNA join(<1898267..1898425,1898513..>1899142) /locus_tag="PAL_GLEAN10008942" /product="hypothetical protein" CDS join(1898267..1898425,1898513..1899142) /locus_tag="PAL_GLEAN10008942" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11809.1" /translation="MDTVMAPNRLFYQAVPTLQKAFFFYAPCSRTSRQRDRAVTSTQQ TRQLRAAPQTCPQRRTCKSPLARDHGNASPRGGEGSRRNGAQPAALNVCSKSSRHGFP NIRISCHDHKTENHNAVTTRQVCHLKNSLCPQGVTKPHTDPRAEVAEKGHSELVQAGQ RRFAAALKTSPEVPTQEGPLGSSRRCGSPGSDPAGLAIIRVFEQHPWSSTPAGLGHCP ALFMDPEDSDGSRIPGEATTEGQKPKVTCVVPTSSPFDRRVNCS" assembly_gap 1902776..1903036 /estimated_length=261 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1927859..1927926 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1931512..1931529 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1937032..1937324 /estimated_length=293 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1961781..1961861 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1962882..1962904 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1963548..1963776 /estimated_length=229 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2011674..2011720 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2028011..2028118 /estimated_length=108 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2028884..2028930 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2045538..2045897 /estimated_length=360 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2061959..2061972 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2065654..2065669 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2068503..2069705 /estimated_length=1203 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2074245..2078085 /estimated_length=3841 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2087849..2088659 /estimated_length=811 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2090506..2090685 /estimated_length=180 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2094546..2094652 /estimated_length=107 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2113500..2113538 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2117184..2117255 /estimated_length=72 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2128493..2128584 /estimated_length=92 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2130206..2130236 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2138896..2138905 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2141225..2141239 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2150854..2150915 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2166507..2168379 /estimated_length=1873 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2180356..2181155 /estimated_length=800 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2192194..2192205 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2221008..2221084 /estimated_length=77 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2227652..2227664 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2243213..2243437 /estimated_length=225 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2251882..2251921 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2282770..2289533 /estimated_length=6764 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2298604..2298947 /estimated_length=344 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2317889..2317949 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2318965..2319241 /estimated_length=277 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2321237..2321290 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2330213..2330358 /estimated_length=146 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2338776..2338786 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2362475..2362760 /estimated_length=286 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2369286..2369347 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2387796..2387847 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2394166..2394195 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2395756..2395952 /estimated_length=197 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2407969..2410089 /estimated_length=2121 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2416128..2416173 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2426740..2426758 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2436356..2436950 /estimated_length=595 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2439168..2439210 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2443503..2443569 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2446089..2449466 /estimated_length=3378 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2450727..2451197 /estimated_length=471 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2461544..2461678 /estimated_length=135 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2462312..2462345 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2463207..2463401 /estimated_length=195 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2468546..2468598 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2469168..2469223 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2475272..2475308 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2477836..2477945 /estimated_length=110 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2484374..2484430 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2508828..2508857 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2515994..2516955 /estimated_length=962 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2536632..2536914 /estimated_length=283 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2546026..2546100 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2564311..2564327 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2581392..2581427 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2591805..2591820 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2594838..2594895 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2612175..2612249 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2616552..2616564 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2617390..2617486 /estimated_length=97 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2632984..2633018 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2640771..2640800 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2647062..2648518 /estimated_length=1457 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2649459..2652409 /estimated_length=2951 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2663227..2663273 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2680267..2680365 /estimated_length=99 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <2737424..>2930038 /locus_tag="PAL_GLEAN10008950" mRNA join(<2737424..2737515,2874572..2874735,2875047..2875138, 2913689..2913861,2914570..2914648,2914745..2914860, 2919501..2919583,2920032..2921054,2922354..2922529, 2923167..2923467,2923556..2923674,2923779..2923950, 2926367..2926522,2927466..>2930038) /locus_tag="PAL_GLEAN10008950" /product="Antigen KI-67" CDS join(2737424..2737515,2874572..2874735,2875047..2875138, 2913689..2913861,2914570..2914648,2914745..2914860, 2919501..2919583,2920032..2921054,2922354..2922529, 2923167..2923467,2923556..2923674,2923779..2923950, 2926367..2926522,2927466..2930038) /locus_tag="PAL_GLEAN10008950" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Antigen KI-67" /protein_id="ELK11810.1" /db_xref="InterPro:IPR000253" /db_xref="InterPro:IPR008984" /db_xref="InterPro:IPR012568" /db_xref="UniProtKB/Swiss-Prot:P46013" /translation="MCCSAQLEAELSPEYVDGAFGGYVHPEEDRRTQKALVATTETPE NKEAHVRSTKVDVAHESCCGPQSSFRSSQEAPESKSFGRVDGYNHAIEIQIRSMEHLM NSGPVSSLTLQVHDDLGRKRTETPEAPAENGEERVQSSKLRKPQGGHGDTRDPETSPR TLMSFCVLGNPPSWGIECDIRIQLPVVSKQHCKIEISGQKATLFNFSATNPTQVNGSV IDEPVQLKHGDMITIVDRSFRCLRIRARGLTSLLTLVSSFGFCSWILHDGNVQDPNTR SEVTEEGVSGPVHAEGVGAAHGIPRASGEPGARKTPDVPSSALPGDDGKNAAGPTASE FREDSSVTSVSGSGELTCPSTRCLEKCGENESPFRKLYESLKEELDVKSEKENVLQNR RRSGSRSHRTTDNGSAVGSQGAAQLWVSPKPGRRSGPRSQSEVGSASGDRGRGRTEAR RTDVGPAQTPRDAVGPRVAPRELTKSESPAPCLQQNSSRPGPGGDRSRGGDSVSLSPH VSLGAGGGLSAPERILTRTQTQTATRDDGADKSRNTPEKASSKKRRSSVPADADMLAV DAETQAPAPLSPLRAQAERKVPDSPLSTPEPLDVSNSAEDVNKMEGVPSKRRRVSFGG HLRPELFDENLPPNTPLKRGETPTKRRSLGTHTPAVLKKIIKEQPPPSGKDDASEIRL GTPAQNALPSLPARTPTGPAAAHTHGARPLPSGPPCAQGTDLPRSGGRRSSGRPPRPS MGRSQLELLQAIHSKRRSGASEANLIVAKSWADVVRLSAKQAQTKVAKRSAQRPPSKR QRRSNMPKKPVGSVHHPSSTGHANSPCTIVIGKAHLEKVNAPARPCRMLNSFIFSRKA DFNEDLSGLTEMFKTPAKEKVQMTSICPTTFSNSEDLLRKMFAVPSSEEETLLRTTKN TGEAVSPSTRNAPEEPSEETSTNSAFRRQRFIVNGEMGRAPPEAEPLRPASSADKLRR SAELGNARTPGAEGEHGVTEASAVEDTWGGRLGRTPSREQKPEAELKESARSFETCRK SNRSEENSEKAAAARRSRASELRRALRPEDPVALGRPHDTDPAGARGSHGPLRIPGHA REPGDTESRTTTVGSQPPEPEPFRTPAQGNVQVKTPSQKVSVEVLSAQRKRPHTPGES TNTPGEPEGDEKDVTACEDTPEQKRNPAEHAAGSRRRPRTPKRKVQALEDLAGFRELL QTPDHTVDAMTDVKTKTPCRSPQAEPVTMPTGRKSRAVTSLGKVEMDEDISALRNPTP TPGETTRSHGEAGGDDKDISHLKQTPEQKVDPAENAAGSKRRPRTPKRKEQPLGDLAG FTELLQTPDPTLEPATDDKTNNIPCRSPQVDPVITSTVMTRGLKTLLQKVDVEEALLA LRKSPRAPGGTTCSPREPAGDEKVIELFQATPELKPDPAENAAGSRRRPRTPKRKVQH LEDLAGFRELFQTPDRTLEPVTDDKTKTPCKSPQAEPLITSTVRTRGLKTLLQKVDVE EALSALRKSPRAPGGTTCSPREPAGDEKVIEFFQATPELKPDPAENAAGSRRRPRTPK RKVQHLEDLAGFRELLQTPDHTVDAMTDVKTKTPCRSPQAEPVTMPTGRKSRLKTSLG KVEMDEDISALRNPTPTPGETTRSHGEAGGDDKDISHLKQTPEQKVDPAENAAGSKRR PRTPKRRVQSLGELAGFRELLLTPDCTVDAMTDDRSNNIPSRSPKPEPINTNRKSHLK TPLEKVDTEEELSAPRKPTPTPGGTTHLPREPSDDKEHTLTRRSGR" assembly_gap 2742567..2742688 /estimated_length=122 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2744618..2744671 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2763669..2763871 /estimated_length=203 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2779778..2779787 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2781642..2783061 /estimated_length=1420 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2788061..2788093 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2792267..2792292 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2793030..2793182 /estimated_length=153 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2802339..2802391 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2805218..2805827 /estimated_length=610 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2810851..2810900 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2815360..2815603 /estimated_length=244 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2822170..2822211 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2829632..2829780 /estimated_length=149 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2835394..2835495 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2857353..2857370 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2857820..2857852 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2877221..2880687 /estimated_length=3467 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2888562..2888649 /estimated_length=88 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2892601..2892653 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2909288..2909336 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2926628..2926663 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <2930211..>2932847 /locus_tag="PAL_GLEAN10008952" mRNA <2930211..>2932847 /locus_tag="PAL_GLEAN10008952" /product="Antigen KI-67" CDS 2930211..2932847 /locus_tag="PAL_GLEAN10008952" /codon_start=1 /product="Antigen KI-67" /protein_id="ELK11811.1" /db_xref="InterPro:IPR012568" /db_xref="UniProtKB/Swiss-Prot:P46013" /translation="MTDDRSNNIPSRSPKPEPINTNRKSHLKTPLEKVDTEEELSAPR KPTPTPGGTTHLPREPSDDKEIKVFKATPEQKLDPAENAAGSKRRPRTPKRRVQSLGD LAGFRELLQTPDRTLEPVTDVKTKTPCRSPQVDPVITSTIVTKGLKTLLQKVDVEEAL LALRKSPRAPGGTTCSPREPAGDEKVIELFQATPELKPDPAENAAGSRRRPRTPKRKV QALEDLAGFRELFQSPDRTLEPVTDDKTKTPCKSPQAEPLITPTVRTRGLKTLLQKVD VEEALLALRKSPRAPGGTTCSPRESAGDEKITKAFKATPKQKLELTENVTGSRRRPRT PKGKVQPLEDLAGIEELFRTPDHTVAPVTDDKTQILCRSPRGEPVNTSTSRKSHRKTP LEKGDIEEEPLAPRKPTPTPGGTTHLPREPGDDKGIRAFKATPEQKLELTEIVIGSRR RPRTPQGKAPAPEDLAGIEELFRTPDHTVAPVTDDKAQIPCKSPQAEPAGRKKRPGKV DIEVEPSALKKPTRTSRKTTSSHREPKGDDEDIKLFKKTSEQKAGSAENVTRSKRRPR APKEMARAVGALAGLVGPFQTSDHTDGPGTDDRAAKTLRQSSRPELGIRAASKKRQGK APTREEDVEEEEPAAPRKSTRTSGKTTRSHRAAVGGNKKASVSQETVAQRLGPAGNAV GSRRRLRTRTEQPPPPEDRPGCQELIAAPGQDEAPGSDAESARRDPAPTRDKRKPART SRRVPRALSVEATEDPARSPNGSVSRSPTRERGKDENLAGAKRLRTRTCPPDAAEDPP LQKRQRTAPRDRRPPPGPAVTDRRSQRLSAERTDLPSSTVSIKNKRQKAEVMAPPEKV TVFVTWSLAVVLDGCCPFPCHV" gene <2933499..>2933984 /locus_tag="PAL_GLEAN10008953" mRNA <2933499..>2933984 /locus_tag="PAL_GLEAN10008953" /product="Antigen KI-67" CDS 2933499..2933984 /locus_tag="PAL_GLEAN10008953" /codon_start=1 /product="Antigen KI-67" /protein_id="ELK11812.1" /db_xref="UniProtKB/Swiss-Prot:P46013" /translation="MSLRSRRPNKTSGVEQGPGFTSAEKAPTRRNVKKTPNTSQEMKL RNLEDGAEDPAPGGQAQGGGARPRPGRQRRVPAGAAGEAGDSRAGVHGDAREEKEGAK RSGRGCLRPRKVAAPPAGDTLENEPKQRVTRSAKRSAESLTKASYLPVLFLMNTEGFL E" assembly_gap 2935709..2935776 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<2942914..>2943231) /locus_tag="PAL_GLEAN10008954" mRNA complement(<2942914..>2943231) /locus_tag="PAL_GLEAN10008954" /product="hypothetical protein" CDS complement(2942914..2943231) /locus_tag="PAL_GLEAN10008954" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11813.1" /translation="MPVVWSARGLGDSKGSSERHSRCAVPQIKPNESNPLGFSLPAPL WPQLPTLVGRCPPVSAPSRCPLQMFTWSRKAGCRSKKHTPGSQPGNRGPLRLRLSEKP FGI" assembly_gap 2943543..2943552 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<2943892..>2988323) /locus_tag="PAL_GLEAN10008955" mRNA complement(join(<2943892..2943966,2946183..2946318, 2947141..2947307,2947979..2948104,2960420..2960554, 2961454..2961530,2962617..2962710,2963017..2963166, 2963409..2963544,2965504..2965664,2967076..2967195, 2970291..2970388,2972018..2972054,2972689..2972765, 2976765..2976855,2982000..2982136,2983689..2983762, 2984006..2984105,2988212..>2988323)) /locus_tag="PAL_GLEAN10008955" /product="Receptor-type tyrosine-protein phosphatase epsilon" CDS complement(join(2943892..2943966,2946183..2946318, 2947141..2947307,2947979..2948104,2960420..2960554, 2961454..2961530,2962617..2962710,2963017..2963166, 2963409..2963544,2965504..2965664,2967076..2967195, 2970291..2970388,2972018..2972054,2972689..2972765, 2976765..2976855,2982000..2982136,2983689..2983762, 2984006..2984105,2988212..2988323)) /locus_tag="PAL_GLEAN10008955" /note="GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]" /codon_start=1 /product="Receptor-type tyrosine-protein phosphatase epsilon" /protein_id="ELK11814.1" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="UniProtKB/Swiss-Prot:P23469" /translation="MEPSCPLLLAGFSLPLAKALTANTTSTADSNWTSTTSGPPDAGA PQPLLAWLLLPLLLSLLFLLLAAYFFRFRRQRKAVVSAGDKKMPNGILEEQEQQRVML LSRSPSGPKKYFPIPVGHLEEEIRARSADDCKRFREEFNSLPSGHIQGAFEQANKEEN REKNRYPNILPNDHSRVILSQVDGVPCSDYINASYIDGYKEKNKFIAAQGPKQETVND FWRMVWEQKSATIVMLTNLKERKEEKCYQYWPDQGCWTYGSVRVCVEDCMVLVDYTVR KFCIQALPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVH CSAGVGRTGTFIVIDAMVDMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYSFIYQALL EHYLYGDTELDVSSLERHLQTLQGSAARFDKIGLEEEFRKLTNVRIMKENMRTGNLPA NMKKARVIQIIPYDFNRVILPMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVE DFWRMVWEWKCHTVVMLTEVQEREQDKCYQYWPTEGSVTHGDITIEIKSDTLAEAISV RDFLVTFNQPLARQEDQARMVRQFHFHGWPEVGIPAEGKGMLDLIGAVQKQQQQTGNH PITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFC YKVVQDFIDIFSDYANFK" assembly_gap 2950073..2959710 /estimated_length=9638 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2965092..2965109 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2982406..2982445 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2998755..2999336 /estimated_length=582 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3017191..>3017421 /locus_tag="PAL_GLEAN10008959" mRNA <3017191..>3017421 /locus_tag="PAL_GLEAN10008959" /product="hypothetical protein" CDS 3017191..3017421 /locus_tag="PAL_GLEAN10008959" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11815.1" /translation="MSRVASGTAQDWMVAVAGSSSAQDSSRVRGERRAKVGMCRTLRA LSAWDSLSASRIELRVSVPYSPSPGEIDDLGD" assembly_gap 3018885..3018902 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3024581..3024596 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3040989..3041013 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3055944..3056146 /estimated_length=203 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3060421..3061091 /estimated_length=671 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3062963..3062994 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3070406..3070457 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3081221..3081751 /estimated_length=531 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3090236..>3101594 /locus_tag="PAL_GLEAN10008960" mRNA join(<3090236..3090464,3096508..3096687,3101314..>3101594) /locus_tag="PAL_GLEAN10008960" /product="Clarin-3" CDS join(3090236..3090464,3096508..3096687,3101314..3101594) /locus_tag="PAL_GLEAN10008960" /codon_start=1 /product="Clarin-3" /protein_id="ELK11816.1" /db_xref="UniProtKB/Swiss-Prot:Q8NCR9" /translation="MPTTKKTLMFLSSFFTSFGSFIVICATLGTQEWVSSKIAINDLS SNGSIVITYGLFRGRSTQELYQGLAEPDKYFEVLGKLNSSSSKTLHWVVILALFLGLS TSLLSSGFTLYNSISNPYQTFLGPIGVYTWSGLGASFAFLTMVLFVGNVQSNHLSEDL AQVLYPLYPSTIHGGMTHSYGYSFWLLLLTVLLNIVTVVIIVFYQKARYRQKQEQKKP MEYAPRDGILF" assembly_gap 3114201..3114553 /estimated_length=353 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3135958..3136023 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3136644..3136696 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3138602..3138659 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3158945..3161481 /estimated_length=2537 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3197416..3197983 /estimated_length=568 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3251864..3253833 /estimated_length=1970 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3255527..3255599 /estimated_length=73 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3260844..3260866 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3278347..3278356 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3287578..3287639 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3289320..3303804 /estimated_length=14485 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3318271..3318296 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3349067..3350174 /estimated_length=1108 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3353954..3355093 /estimated_length=1140 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3358735..>3428858) /locus_tag="PAL_GLEAN10008964" mRNA complement(join(<3358735..3358830,3362914..3363065, 3364306..3364459,3367076..3367274,3371520..3371665, 3377345..3377482,3383207..3383277,3384242..3384422, 3385552..3385638,3388370..3388454,3390215..3390293, 3390438..3390507,3395035..3395139,3396050..3396139, 3402997..3403116,3406601..3406691,3407921..3407961, 3413367..3413523,3413708..3413793,3421222..3421370, 3427644..3427702,3428620..>3428858)) /locus_tag="PAL_GLEAN10008964" /product="Dedicator of cytokinesis protein 1" CDS complement(join(3358735..3358830,3362914..3363065, 3364306..3364459,3367076..3367274,3371520..3371665, 3377345..3377482,3383207..3383277,3384242..3384422, 3385552..3385638,3388370..3388454,3390215..3390293, 3390438..3390507,3395035..3395139,3396050..3396139, 3402997..3403116,3406601..3406691,3407921..3407961, 3413367..3413523,3413708..3413793,3421222..3421370, 3427644..3427702,3428620..3428858)) /locus_tag="PAL_GLEAN10008964" /note="GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0051020 - GTPase binding [Evidence IEA]" /codon_start=1 /product="Dedicator of cytokinesis protein 1" /protein_id="ELK11817.1" /db_xref="InterPro:IPR010703" /db_xref="UniProtKB/Swiss-Prot:Q8BUR4" /translation="MPPPSLLGLSCTSAALVAGLEGTTSTLEDWLMLQGGTHAAGQLP SLHEGRSTPTPLLSPRLTAASQLPGGFLRPCSPLWLYGDMRRQIGFEIRDMWYNLGQH KIKFIPEMVGPMLEMTLLPETELRKATIPIFFDMMQCEFHSTRSFQMFENEIITKLDH EVEGGRGDEQYRVLFDKILLEHCRKHKYLAKTGEAFVRLVVRLMERLLDYRTIMHDEN KESRMNCTVNVLNFYKEIEREEMYIRYLYKLCDLHKECDNYTEAAYTLLLHAKLLKWS EDVCAAHLTQRDGYQATTQGQLKEQLYQEIIHYFDKGKMWEEAIALGKELAEQYENEM FDYEQLSELLRKQAQFYENIVKVIRPKPDYFAVGYYGQGFPTFLRFPNAEKMKTTSPP GDDIRNSPGQHIQCFTVKPKLDLPPKFHRPVSEQIVSFYRVNEVQRFEYSRPIRKGEK NPDNEFANMWIERAVYTTAYKLPGILRWFEVKSVFMVEISPLENAIETMQLTNDKLNS MVQQHLDDPSLPINPLSMLLNGIVDPAVMGGFANYEKAERYLQEHPEAHEKIEKLKDL IAWQIPFLAEGIRIHGERVTEALRPFHERMEACFKQLKDKVEKQYGVRAMPSSLDDRR GSRPRSMVRSFTMPSSSRPLSVASISSLSSDSTPSRPGSDGFALEPLLPKKMHSRSQD KLDKDDPEKDKKDKKKEKRNSKHQEAFDKELKPADAPLQQSEAVILSETISPLRPQRP KSQVINAIGGERRFSVSPTSPSSQQTPPPVTPRAKLSFSLQPSVELNGMAGTDAAEVP PPLPLKGGTTDYGYLADTPDLPGSPAAPPPPPHQRHLPPPLPSKTPPPPPPKTTRKQT SVDSGIVQ" assembly_gap 3364791..3365107 /estimated_length=317 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3390543..3390565 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3393257..3393356 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3395543..3395570 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3400675..3401595 /estimated_length=921 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3424623..3425548 /estimated_length=926 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3433378..>3433680) /locus_tag="PAL_GLEAN10008967" mRNA complement(<3433378..>3433680) /locus_tag="PAL_GLEAN10008967" /product="hypothetical protein" CDS complement(3433378..3433680) /locus_tag="PAL_GLEAN10008967" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11818.1" /translation="MAMGGRSAVRTVSMFFRTLRTCVPGTGEMSERCFETRSRAIRHL SLSPFLVFSCGTTIFTWLSLSLRKNPCNWRTFQALREPKSLTSKSASSPDITGRSL" gene complement(<3435141..>3504599) /locus_tag="PAL_GLEAN10008968" mRNA complement(join(<3435141..3435296,3436717..3436795, 3498760..3498854,3504516..>3504599)) /locus_tag="PAL_GLEAN10008968" /product="Dedicator of cytokinesis protein 1" CDS complement(join(3435141..3435296,3436717..3436795, 3498760..3498854,3504516..3504599)) /locus_tag="PAL_GLEAN10008968" /codon_start=1 /product="Dedicator of cytokinesis protein 1" /protein_id="ELK11819.1" /db_xref="UniProtKB/Swiss-Prot:Q14185" /translation="MTAILRQMEDCHYAHLIKTFGKMRTDVVDFLMETFIMFKNLIGK NVYPSDWVIMNTVQNKVFLRAINQYADMLNKKFLDQANFELQCCHTPQHKRTRVRVGS LTPAADGRSQLPVSACRSRTSDTHPSAPHRCGKGS" assembly_gap 3446837..3447353 /estimated_length=517 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3480887..3482196 /estimated_length=1310 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3500546..3500584 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3501721..3501759 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3509380..3510363 /estimated_length=984 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3513601..3513638 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3520772..3520918 /estimated_length=147 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3526861..3526886 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3536160..3536174 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3542843..3543694 /estimated_length=852 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3544456..3544491 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3553472..>3553882) /locus_tag="PAL_GLEAN10008971" mRNA complement(<3553472..>3553882) /locus_tag="PAL_GLEAN10008971" /product="hypothetical protein" CDS complement(3553472..3553882) /locus_tag="PAL_GLEAN10008971" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11820.1" /translation="MASAYARLSVRWFTFHDGDPAVLHHGGLPRDGSVLVSRFLAAPV LVTAATESVNSTRVSRVTQAPNQVLGTQENEAPSLECVGQHEKDTCLRITPAHWAGPH GGKRRKVPDVLLGESGPPSPGDTYERPEARATSL" assembly_gap 3559515..3559533 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3562267..>3563397 /locus_tag="PAL_GLEAN10008972" mRNA <3562267..>3563397 /locus_tag="PAL_GLEAN10008972" /product="hypothetical protein" CDS 3562267..3563397 /locus_tag="PAL_GLEAN10008972" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11821.1" /db_xref="UniProtKB/Swiss-Prot:Q6ZSG2" /translation="MVSKDTGKCVLAASESEVEPAACLALEMKYALDPNRQIKKRNKA LQVRFKDICEAQNEQGAPRLPAGQVGEKRGARPVCCRAAYRKYMTVPARRSIPNVTKS TGVQTSPDLKKCYQTFPLDRKKGALAGTPAGGAFASQDNGFGIDSKEKREEAPAWAAG RARTTAALVFHHDEHRNALDSPAGVNCAEPCGDPDAPLHGSTRPPLHGPGHRLPGKAA QGRATPDAEEPAPTAPGRVFKTEVAAVYAPAPSAKATEPALSDSAAASQWSLCPAADE EHGRAAHLNGLQEPPGQCLYPECSDQPPQTQAPRGREDQPCPPAAAEGEESQQIVPHT EVVGLKAQLQVMEHLISSSQETIKVLLGVIQELEKGEAHREG" gene complement(<3601582..>3838256) /locus_tag="PAL_GLEAN10008975" mRNA complement(join(<3601582..3601914,3605839..3605934, 3607599..3607726,3627351..3627457,3630589..3630659, 3680674..3680782,3687450..3687584,3692683..3692783, 3693107..3693196,3695563..3695660,3699623..3699806, 3700109..3700212,3704391..3704463,3705381..3705479, 3706599..3706723,3711318..3711443,3716058..3716137, 3719409..3719481,3725652..3725787,3726167..3726248, 3727349..3727506,3728396..3728531,3732335..3732483, 3734946..3735042,3738637..3738692,3838230..>3838256)) /locus_tag="PAL_GLEAN10008975" /product="Dedicator of cytokinesis protein 1" CDS complement(join(3601582..3601914,3605839..3605934, 3607599..3607726,3627351..3627457,3630589..3630659, 3680674..3680782,3687450..3687584,3692683..3692783, 3693107..3693196,3695563..3695660,3699623..3699806, 3700109..3700212,3704391..3704463,3705381..3705479, 3706599..3706723,3711318..3711443,3716058..3716137, 3719409..3719481,3725652..3725787,3726167..3726248, 3727349..3727506,3728396..3728531,3732335..3732483, 3734946..3735042,3738637..3738692,3838230..3838256)) /locus_tag="PAL_GLEAN10008975" /codon_start=1 /product="Dedicator of cytokinesis protein 1" /protein_id="ELK11822.1" /db_xref="UniProtKB/Swiss-Prot:Q14185" /translation="MSASASTGQGIFPASYIHLKEATVEGKGQHETVIPGDLPLIQEV TTTLREWSIIWRQLYVQDNREMFRTVRHMIYDLIEWRSQILSGTLPQDELKELKKKVT AKIDYGNRILDLDLVVRDGDGNILDPELTSTISLFRAHEIASKQVEERLREEKSQKQN IDINRQAKFAATPSLALFVNLKNVVCKIGEDAEVLMSLYDPTESRFISENYLVRWSSS GLPKDIDRLHNLRAVFTDLGSKDLKREKISFVCQIVRVGRMELRDNNTRKLTSGLRRP FGVAVMDVTDIINGKVDDEDKQHFIPFQPVAGESDFLQTVINKVIAAKEVNHKGQGLW VTLKLLPGDIHQIRKEFPHLVDRTTAVARKTGFPEIIMPGDVRNDIYVTLVQGDFDKG SKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVA IPIEDVNRSHLRFTFRHRSSQDSKDRSEKVFALAFVKLMRYDGTTLRDGEHDLIVYKA EAKKLEDAATYLSLPSTKAELEEKGHSATGRSMQSLGSCTISKDSFQVSTLVCSTKLT QNVDLLGLLKWRSNTSLLQQNLRRLMKVDGGEVVKFLQDTLDALFNIMMENSESETFD TLVFDALVFIIGLIADRKFQHFNPVLETYIKKHFSATLAYTKLTKVLRNYVDNAEKPG VNEQLYRAMKALEYIFKFIVRSRVLFNQLYESKGEADFMDSLLQLFRSISDMMRGASE QAVRVKGAALKYLPTIVNDVKLVFDPKELSKMFTDFILNVPTGLLTIQKLYCLIEIIH SDLFTQHDCREILLPMVTDQLKYHLERQEDLEACCQLLSDILEVLYRKDVGPTQRHVQ IIMEKLLRTVNRTVISMGRDSELIKPGNDRCTEREMPASPKKRSPWRSRLGQGTGRVD LRPVPVTPGPPDSLEASDGSYCSRSEHQLLGTVTGCGVLRCDDSVIGEDDAVSEKPVL SSSLGGFRSPCSVIRKTV" assembly_gap 3612719..3615798 /estimated_length=3080 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3646153..3647423 /estimated_length=1271 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3648836..3649865 /estimated_length=1030 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3652280..3652717 /estimated_length=438 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3657535..3658181 /estimated_length=647 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3662528..3665242 /estimated_length=2715 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3667349..3667368 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3668092..3671918 /estimated_length=3827 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3676891..3676981 /estimated_length=91 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3680820..3680861 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3715845..3715892 /estimated_length=48 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3736299..3736317 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3767594..3767638 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3771600..3771697 /estimated_length=98 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3772025..3772441 /estimated_length=417 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3785052..3785091 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3786052..3787098 /estimated_length=1047 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3810093..3810132 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3811427..3811487 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3822160..3822179 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3826400..3826453 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3828848..3828878 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3833841..3834007 /estimated_length=167 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3839530..3839607 /estimated_length=78 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3840816..3841055 /estimated_length=240 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3841580..3841594 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3856206..3856257 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3866803..3866818 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3868662..3868676 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3873241..3873251 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3882128..3882183 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3885792..3886546 /estimated_length=755 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3925006..3925065 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3954406..3954669 /estimated_length=264 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3973278..3973399 /estimated_length=122 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3996772..3996914 /estimated_length=143 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4005737..4008888 /estimated_length=3152 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4032098..4032115 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4040153..>4080642 /locus_tag="PAL_GLEAN10008982" mRNA join(<4040153..4041419,4074796..4075068,4078085..4078266, 4080337..>4080642) /locus_tag="PAL_GLEAN10008982" /product="hypothetical protein" CDS join(4040153..4041419,4074796..4075068,4078085..4078266, 4080337..4080642) /locus_tag="PAL_GLEAN10008982" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11823.1" /db_xref="UniProtKB/Swiss-Prot:Q96M02" /translation="MESSEVGSGVWYKPGTGELGSVPCWLSKEFSASQQTARVIAIFF RLQDTLASQNTKMISSIVISQLIDEHKSEADGAASPAPSTVAQPHTCPTRPPLANPGG VSVNSAFAFLPGRLEIQTPAEARGPETELPPKEKPCSGPPKGFASITITARRLGPPAR TVVWGAARASLYTKCQAQDTLLEEPSALATGAGPCRHEGPFTCTELSRNSSVMRLEFP EARARLCEGPECWVTKLDGRGHRFAPGAAQPGKGRLVFSSCVHLRVSQQCPNSIYYLD RSLSVPIEPPQLAGPKVHRSVLSLNLSCSSHGLTAGGAAGTAMGGGPGSRDLQQELPR ESQSLLGRRRKPAVRGPFLKQHPSLAQVHLGTGTCPWGGSPLLENPEFVDVGTHQATV RNGKEGHGVHPSSLHASQLSIHIPGWSYAAVETKVFSGSSEKQREARMTVSAPPMEWK LLGDSLAAGLSSPSNDLAEPAEPRRQSFLEPGIPLPGFLCPLQDARARPQEDSGVRIG GASPGGDHTCCDLVVKIKECEQSEDSAMPEPEPVLPEPAPEDPETPAPPEACSEGRQA PASSLTLQEALEVRNPRFISRSRERLKKLEHMAQQRRAQRKENLAQKQALLPVRANKK QFTVPHPLSGELPRLGRLGAGWRVLRAGPHTRGDGLNDATAYTGLVIAPRT" assembly_gap 4042886..4042948 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4049286..4049305 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4081669..4081697 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4083881..4084067 /estimated_length=187 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4097335..4098007 /estimated_length=673 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4105639..4105669 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4110260..4110271 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4116870..>4126843) /locus_tag="PAL_GLEAN10008983" mRNA complement(join(<4116870..4116977,4126739..>4126843)) /locus_tag="PAL_GLEAN10008983" /product="hypothetical protein" CDS complement(join(4116870..4116977,4126739..4126843)) /locus_tag="PAL_GLEAN10008983" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11824.1" /translation="MELRKMDEDRPAVISFAEKTELESCCLEQREAIKEVGLKTKEVD RAFPELLLCPVLDLKDTDDSACACGP" assembly_gap 4121630..4121954 /estimated_length=325 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4125934..4126024 /estimated_length=91 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4133535..4133548 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4135557..4135571 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4151874..4151892 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4158819..>4168803 /locus_tag="PAL_GLEAN10008984" mRNA join(<4158819..4158849,4159522..4159658,4165777..4166197, 4168655..>4168803) /locus_tag="PAL_GLEAN10008984" /product="hypothetical protein" CDS join(4158819..4158849,4159522..4159658,4165777..4166197, 4168655..4168803) /locus_tag="PAL_GLEAN10008984" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11825.1" /translation="MEIGLNWTCVGVTLGSSSAPSVQQARTRDQGGAYEVVSASLANG DLWTPKNSVDSKTNLDSTFGLTSAFVPALGPHSTRLGAQLFVILWSLRWFIFLLLLPA TPSLGAVASALCPHPLAQSWRLVERCECLSPGPGPSSVPKARVAHCAETAVAASEDRA DKRQDLQFIQTPEGAFMASPFLWKIGKPLSENLDFLANRNVFALPRVIAAFSVLSGLR GNASEPQEPSVGRTLAACVCGFAHLRC" assembly_gap 4175672..4175901 /estimated_length=230 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4197759..4198202 /estimated_length=444 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4205358..>4270824 /locus_tag="PAL_GLEAN10008985" mRNA join(<4205358..4205394,4205437..4205510,4270558..>4270824) /locus_tag="PAL_GLEAN10008985" /product="hypothetical protein" CDS join(4205358..4205394,4205437..4205510,4270558..4270824) /locus_tag="PAL_GLEAN10008985" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11826.1" /translation="MSVEPILLPASQKSSRSVEFSNTTGKQRADRKSGKKRNIPCGFI ASVSCLIASPLLRINYRQPPPPTQTSKSQQLSKVHPQATPWRLFLWRLEDSNPQRPFS PLNLANDFTLIFRCFADTDVLLL" assembly_gap 4215914..4215969 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4222801..4222816 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4230157..4230211 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4243121..4243146 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4264846..4266173 /estimated_length=1328 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4274637..4274692 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4282822..4282900 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4290018..4290053 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4293489..4293513 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4298358..4298396 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4307739..>4360480 /locus_tag="PAL_GLEAN10008986" mRNA join(<4307739..4307867,4324145..4324221,4341159..4341345, 4348036..4348101,4349186..4349257,4354145..4354314, 4356449..4356533,4360304..>4360480) /locus_tag="PAL_GLEAN10008986" /product="Disintegrin and metalloproteinase domain-containing protein 12" CDS join(<4307739..4307867,4324145..4324221,4341159..4341345, 4348036..4348101,4349186..4349257,4354145..4354314, 4356449..4356533,4360304..4360480) /locus_tag="PAL_GLEAN10008986" /note="GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]" /codon_start=1 /product="Disintegrin and metalloproteinase domain-containing protein 12" /protein_id="ELK11827.1" /db_xref="InterPro:IPR001590" /db_xref="InterPro:IPR002870" /db_xref="UniProtKB/Swiss-Prot:Q61824" /translation="VTYQCDSTLSFLFVSHRGLIASGFTETHYLQDGTDVSLTRNYTG HCFYHGHVQGYPGSTVSLSTCSGLRGLITFGNKTYVLEPLKNVTNRYKLFPAETLTGV WGPCGSQASTSGLAADGSLPSPSRTRETRHKRETLKMTKYVELVIVADNREFQRQGKD LEKVKQRLIEIANHVDKFYRPLNIRIVLVGVEVWNDIDKCSVSQDPFATLHEFLDWRK MKLLPRKPHDNAQLISGVYFQGTTIGMAPIMSMCTAEQSGGVVMDHSDSPLGAAVTLA HELGHNFGMNHDTLERGCRCTMAADKGGCIMNPSTGQVLMLHCF" assembly_gap 4368804..4370363 /estimated_length=1560 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4376583..>4423079 /locus_tag="PAL_GLEAN10008989" mRNA join(<4376583..4376749,4380321..4380498,4386032..4386121, 4387524..4387719,4396719..4396827,4396928..4397126, 4399306..4399383,4401946..4402054,4405391..4405526, 4406380..4406488,4408234..4408413,4420939..4421069, 4423019..>4423079) /locus_tag="PAL_GLEAN10008989" /product="Disintegrin and metalloproteinase domain-containing protein 12" CDS join(4376583..4376749,4380321..4380498,4386032..4386121, 4387524..4387719,4396719..4396827,4396928..4397126, 4399306..4399383,4401946..4402054,4405391..4405526, 4406380..4406488,4408234..4408413,4420939..4421069, 4423019..4423079) /locus_tag="PAL_GLEAN10008989" /note="GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]" /codon_start=1 /product="Disintegrin and metalloproteinase domain-containing protein 12" /protein_id="ELK11828.1" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001762" /db_xref="InterPro:IPR006586" /db_xref="UniProtKB/Swiss-Prot:O43184" /translation="MPRVLMSFLCMQLSESHGDLSNHCADGSCPWIPDIVLGKGFRAL LMECRHVSRADPYPFPMLFSSCSRKDLEASLEKGVGVCLFNLPEVRQSSGGRKCGNGY VEEGEQCDCGEPEECTSLCCNATTCTLKPDAVCAHGLCCEDCQLKPAGTACRDPSNSC DLPEFCSGSSPHCPANVYLHDGHPCQGLDGYCYNGVCQTHEQQCVTLWGPGAKPAPGI CFERVNSAGDPYGNCGKSSKGSFAKCELRDAKCGKIQCQGGASRPVIGTNAVSIETNI PLQEGGRILCRGTHVYLGDDMPDPGLVLAGTKCADGKICLNRRCQNISVFGVHECAKQ CHGRGVCNNRRNCHCEAHWAPPLCDKSGFGGSTDSGPIRRADNQGVTIGLLVTVLCLL AAGFVVYLKRKTLIPLLFTDKKSAIEKLRCVRPPRPSSGSHPGQAHLTHLGKGLLRKP PHSSAPRDNPKRPLQCLNVDISRPLKALDFPQPHPPPRVLPPLHQAPRAPGVPARPLP ANPAPRQAQGTRKPDPPQKPLPANPLSKTTRLASALARTPEQQASGLRLVPLRAAPEC PRPGPRATHVAYAK" gene <4424174..>4426148 /locus_tag="PAL_GLEAN10008990" mRNA join(<4424174..4424282,4426027..>4426148) /locus_tag="PAL_GLEAN10008990" /product="hypothetical protein" CDS join(4424174..4424282,4426027..4426148) /locus_tag="PAL_GLEAN10008990" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11829.1" /translation="MLAKAATKRNALFPGTSYVCCPYWLVHIGQRAISVARILRLKPE AIVLWHTNKHIRVTPERKQLKLRPVSDCSQSL" gene complement(<4430467..>4466379) /locus_tag="PAL_GLEAN10008991" mRNA complement(join(<4430467..4430682,4431436..4431480, 4431582..4431659,4432160..4432303,4435004..4435169, 4440023..4440088,4440940..4441014,4442016..4442097, 4446640..4446764,4453678..4453855,4455061..4455246, 4466289..>4466379)) /locus_tag="PAL_GLEAN10008991" /product="Fibronectin type 3 and ankyrin repeat domains protein 1" CDS complement(join(4430467..4430682,4431436..4431480, 4431582..4431659,4432160..4432303,4435004..4435169, 4440023..4440088,4440940..4441014,4442016..4442097, 4446640..4446764,4453678..4453855,4455061..4455246, 4466289..4466379)) /locus_tag="PAL_GLEAN10008991" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Fibronectin type 3 and ankyrin repeat domains protein 1" /protein_id="ELK11830.1" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR008957" /db_xref="InterPro:IPR020683" /db_xref="UniProtKB/Swiss-Prot:Q6B858" /translation="MWASQLPHGLLLSGAALPHILGSYRSFRLKAYLWDLNVKEIRGG LSSGPGAGKTGHPVFLGAGAVLQGGRGSGRSAAWDTGISGPFSPDNQHEITPFSKPHP PVVGKVTHHSIELYWDLEKKAKRHGPQDQWFRFSIEEEDPKVHTYGLIYTGYATKHVV EGLEPRTLYRFRLKVTSPSGEYEYSPVVSVSTTREPISSEHFHRAVNVNDEDLLVRIL QGGNVKVDVPNKFGFTALMVAAQKGYSRLVKILISNGTDVNLKNGSGKDSLMLACYAG HLDVVKYLRRHGASWETRDLGGCTALHWAADGGHCDVIKWMIKDGCEVDAVDTGSSWT PLMRVSAVSGNQKAASLLIEAGANVNVKDKDGKTPLMVAVLNNHEELVQLLLEKGADA SVKNEFGKGVLEMARVFDRQGRLGEVQSVRTDLSETVFAHTSVLTRDRLAGRFAKERR VEFCLLSRKGFDADHADQRQGGINRGEVYRLGA" assembly_gap 4434720..4434792 /estimated_length=73 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4445184..4445193 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4454468..4454517 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4455925..4456781 /estimated_length=857 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4469588..4469610 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4492646..4493129 /estimated_length=484 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4501126..>4527691 /locus_tag="PAL_GLEAN10008992" mRNA join(<4501126..4501404,4504389..4504582,4510529..4510901, 4515409..4515654,4516917..4517016,4517096..4517332, 4523331..4523522,4526235..4526422,4527497..>4527691) /locus_tag="PAL_GLEAN10008992" /product="Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32" CDS join(4501126..4501404,4504389..4504582,4510529..4510901, 4515409..4515654,4516917..4517016,4517096..4517332, 4523331..4523522,4526235..4526422,4527497..4527691) /locus_tag="PAL_GLEAN10008992" /note="GO_function: GO:0004386 - helicase activity [Evidence IEA]" /codon_start=1 /product="Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32" /protein_id="ELK11831.1" /db_xref="InterPro:IPR007502" /db_xref="InterPro:IPR011709" /db_xref="UniProtKB/Swiss-Prot:Q7L7V1" /translation="MEEDLERPNSSSEKRYFPESLDSSDVDEEGLLACEDLELNPFDG LPYSSRYYKLLKEREALPIWKEKYSFMENLLQNQIVIISGDAKCGKSSQVPQWCAEYC LSVHYEHGGVVCTQAHKQTAVQLALRVADEMDVNIGHEVGYVIPFENCCTSETILRYC TDDMLQREMMSNPFLGSYGVIILDDTHERSIATDVLLGLLKDVLLARPELKLVINSSP PLISKLSSFYGNVPLIEVKNKHPVEVVYLSGAQKESFESVVHLIFEIHHSGEQGDIVV FLACEQDIEKAYEIVCQEGSNLNPDLGELVVVPLYPKEKCALFKPNEETEKRSHVYQR RVVLTASSGESLIWSNTVRFVIDVGVERRKVYNPRIRASSLVMQPISQSQAETRKQIL GSSSSGKLFCLYSEEFATKDMRPLKAAEMQEANLTSMVLFMKRVDIAGLGHCDLMNRP GSSLLAHGQGVGLTRRLLLVPVPTPETPESLMQALEDLDYLAALDNDGNLSEFGIIMS EFPLDPQLSKSILASCEFDCVDEMLTIAAMVTDCVEKWCQDYFLNCSALRMADVIRAE LVEIIKRIELPYAEPAFGSKENALNIKKALLSGYFMQIARDVDGSGNYLMLTHKQVAQ LHPLSSYSITKTTPEWVLFHKFSISENNYVRITSETSPELYVP" gene complement(<4529347..>4533241) /locus_tag="PAL_GLEAN10008994" mRNA complement(join(<4529347..4529517,4530657..4530831, 4532256..4532443,4533185..>4533241)) /locus_tag="PAL_GLEAN10008994" /product="BRCA2 and CDKN1A-interacting protein" CDS complement(join(4529347..4529517,4530657..4530831, 4532256..4532443,4533185..4533241)) /locus_tag="PAL_GLEAN10008994" /codon_start=1 /product="BRCA2 and CDKN1A-interacting protein" /protein_id="ELK11832.1" /db_xref="UniProtKB/Swiss-Prot:Q2NL37" /translation="MDEDEIFGFISLLNLTERKGTQCAEQIKELILSSCEKNCEKSVV EQLDKLLNDTTKPVGFLLSERFINVPPQVALPMHQQLQKELAEAHKTNKPCGRCCFYL LISKTFVGAGKSNPGRTWRSHGEDELLFANAEEEFFHEKAILKFSYSVQEESDTCLGG RWSFDDVPMKPLRTVMLIPCDKMNEIMDKLKDHLSV" gene complement(<4537050..>4540244) /locus_tag="PAL_GLEAN10008995" mRNA complement(join(<4537050..4537196,4537552..4537626, 4540077..>4540244)) /locus_tag="PAL_GLEAN10008995" /product="BRCA2 and CDKN1A-interacting protein" CDS complement(join(4537050..4537196,4537552..4537626, 4540077..4540244)) /locus_tag="PAL_GLEAN10008995" /codon_start=1 /product="BRCA2 and CDKN1A-interacting protein" /protein_id="ELK11833.1" /db_xref="UniProtKB/Swiss-Prot:Q9CWI3" /translation="MASRPKRRAVGAGAPPPPDTPVPHREEAEEDDLEEEDEDDEDSD EEESDDDEVVDEEVNVEFEAYSISDNDYDGIKKLLQQEMEMVVVLYPLQPPVSFLVTK FLGLVSILALLFSPLSSAAAPDFPCYH" gene <4543642..>4558741 /locus_tag="PAL_GLEAN10008996" mRNA join(<4543642..4543705,4546019..4546107,4546278..4546361, 4547887..4547983,4550582..4550656,4554327..4554401, 4557177..4557257,4557539..4557624,4558565..>4558741) /locus_tag="PAL_GLEAN10008996" /product="Uroporphyrinogen-III synthase" CDS join(4543642..4543705,4546019..4546107,4546278..4546361, 4547887..4547983,4550582..4550656,4554327..4554401, 4557177..4557257,4557539..4557624,4558565..4558741) /locus_tag="PAL_GLEAN10008996" /note="GO_function: GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]" /codon_start=1 /product="Uroporphyrinogen-III synthase" /protein_id="ELK11834.1" /db_xref="InterPro:IPR003754" /db_xref="UniProtKB/Swiss-Prot:P10746" /translation="MAGTGRAGERPVATGSPASNSTPGEGCQATMKVLLLKDAKEEDG GQDPYVREFGLHGLEATLIPVLSFEFLSLPSFSEKLCHPEAFGGLIFTSPRAVEAVEL SLGTGNKTEVWKKSLKEKWNAKPVYVVGNATASLVNKIGLDTEGEHCGNAEKLAEYIC SRETPALPLLFPCGALKGETLPKTLKDRGIPMESITVYQKIPHPGIQVNLNSYYSEQG VPASITFFSPSGLAYSLKHIQELSGDDINHIKVTYSMRFWSFSDFFIAFLLIIPEFP" assembly_gap 4545555..4545635 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4549266..4549275 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4559235..4561925 /estimated_length=2691 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4569979..>4576106 /locus_tag="PAL_GLEAN10008997" mRNA join(<4569979..4570079,4570706..4571340,4572303..4572442, 4572673..4572814,4573775..4574032,4575380..4575552, 4575807..>4576106) /locus_tag="PAL_GLEAN10008997" /product="Matrix metalloproteinase-21" CDS join(4569979..4570079,4570706..4571340,4572303..4572442, 4572673..4572814,4573775..4574032,4575380..4575552, 4575807..4576106) /locus_tag="PAL_GLEAN10008997" /note="GO_component: GO:0031012 - extracellular matrix [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="Matrix metalloproteinase-21" /protein_id="ELK11835.1" /db_xref="InterPro:IPR000585" /db_xref="InterPro:IPR001818" /db_xref="InterPro:IPR002477" /db_xref="InterPro:IPR006026" /db_xref="InterPro:IPR018487" /db_xref="InterPro:IPR021190" /db_xref="UniProtKB/Swiss-Prot:Q8K3F2" /translation="MDTDGHLVAHLDSKLTHTHITIETRSTGGCKFAMRRPGRRKRAG AGQVTHRRSPCLSLLQRFLSKYGWAEAPAGLGARGPHNAPPPERPAGAALAKTLRKFQ KVNALPASGELDAATLAAMNRPRCGVPDTEPQLQATSTAPQTRPTPLGQRPRARPKRF LQTLRPGPDLQPKGSPQGGGTWAFAKKTLTWRLVAEGYSSQLSVEEQRYIFRLAFRMW SEVMPLDFREDLTGPAATIDIKLGFGRGRHLGCPRVFDGSGQEFAHAWRLGDIHFDDD EHFTPPTSDRGISLLKVAVHEIGHVLGLPHTYRTGSVMQPNYLPQGPAFELDWSDRKA VQKLYGSCEGSFDTAFDWIRREEDHRGAALLRFSTYFFRNSWYWLYENRNNRTRYGDP IRIVAGWQGVPAQNIDAVVHVWTWRRDERYFFKGNQYWRYDSDKDQAHTEDEQGKSYP KLISEGFPGIPSPLDTAFYDRRKQLIYFFKGSLVFAFDVNRNQVLGSYPKKMTDVFPA VEPQSHPVRHLDAAYYSYAHKAVFLFKGHQYWKVVSDEDRRRRPGLPSNGVLPPRPIS GTWFDVCDVHTSTLNM" assembly_gap 4570305..4570561 /estimated_length=257 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4578927..>4613072) /locus_tag="PAL_GLEAN10008998" mRNA complement(join(<4578927..4579089,4582524..4582675, 4583546..4583661,4586154..4586307,4587586..4587735, 4587897..4588055,4589957..4590180,4591983..4592201, 4593540..4593740,4594049..4594237,4596103..4596253, 4596543..4596614,4598577..4598837,4600244..4600355, 4600615..4600723,4600806..4600953,4603657..4603768, 4604459..4604580,4604854..4604955,4607740..4607896, 4608155..4608279,4609361..4609486,4610152..4610218, 4611899..4612107,4612968..>4613072)) /locus_tag="PAL_GLEAN10008998" /product="Erythroid differentiation-related factor 1" CDS complement(join(4578927..4579089,4582524..4582675, 4583546..4583661,4586154..4586307,4587586..4587735, 4587897..4588055,4589957..4590180,4591983..4592201, 4593540..4593740,4594049..4594237,4596103..4596253, 4596543..4596614,4598577..4598837,4600244..4600355, 4600615..4600723,4600806..4600953,4603657..4603768, 4604459..4604580,4604854..4604955,4607740..4607896, 4608155..4608279,4609361..4609486,4610152..4610218, 4611899..4612107,4612968..4613072)) /locus_tag="PAL_GLEAN10008998" /codon_start=1 /product="Erythroid differentiation-related factor 1" /protein_id="ELK11836.1" /db_xref="UniProtKB/Swiss-Prot:Q6GQV7" /translation="MGDSKEAGAEAPPAGAAARGSLSLLSQGESEEPAQGSALFLGGN EVKSTAVVKYSSAPPRTAFARLEEKTDLKLPPANWLRESAKLGPAGTTILGNSKKSKP FSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRVGRTLLLDELDI QELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAA QPVPSAAEQQEPSGSGQTNDSDGASWPAPFEMPSSVSEDPSASSQGSEPLEPSYIVGH VASAPKEQNLTTLFNDGENSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVS LRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSN FSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTLCEETEDKYQNP FTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHPQIIASANYMLS ELFQLDEPKKEESSESPLNENSDESYSEEEEETPDSDENGPYGSSADPPDDNKAVAII KSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDL PAADPNTPIPLKYEDESTRGGPEGLEKQMALFLDKMGSLQKGNYSSQSGMIPGSWQHK MKLQLILKSSKAYYVLSDAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFL SQYLTLCGDIQLMLAQNANNRAAHLEEFNYQTKEDQEILHSLHRESSCQGFAWATDLS TDLESQLSVSCKCYEAANEILQFSDLKNQNPEHYVQVLKRMGNIRNEIGVFYMNQAAA LQSERVVSKSVSTAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRICAQ AHCGTGDELKREFSPEEGMYYNKAVDYYLKALRSLGTRDIHPAVWDSVNWELSTTYFT MATLQQDYAPLSRKAQEQIEKEVSEAMMKSLKYCDVDSVSARQPLCQYRAATIHHRLA SMYHSCLRNQVGDEHLRKQHRVLADLHYSKAVKLFQLLKDAPCELLRVQLERVAFAEF QMTSQNSNVGKLKTLSGALDIMVRTKHAFQLIGRELVGELGQPKSEEAPPAADPSPSL NREEVIKLLSIFESRLSFLLLQSIKLLSSTKKKTSNNGEDDVALKTNKQIYSQLLRAT ANRNTTLSERIDVLTRLLDQLARGSGGPGQ" assembly_gap 4588948..4588970 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4602683..4602841 /estimated_length=159 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4633330..4633386 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4639427..>4648975 /locus_tag="PAL_GLEAN10008999" mRNA join(<4639427..4639477,4643907..4644038,4644747..4644827, 4648679..>4648975) /locus_tag="PAL_GLEAN10008999" /product="hypothetical protein" CDS join(4639427..4639477,4643907..4644038,4644747..4644827, 4648679..4648975) /locus_tag="PAL_GLEAN10008999" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11837.1" /db_xref="UniProtKB/Swiss-Prot:Q5VZQ5" /translation="MAKGRRFNPPLDKDGRWFPHIGLTQRAPESITRAALREPHSPQF SEQVQEKLPAIYKVREKQAANNSFPFSVHDNRHSFQNSGYFFDSGMGRKKISPEKRQH VSRNFNLWACDYVPSCLDGFSNNQISYVCQEAMVVPIFRRFPRRYNEIWSTFKFIPQQ SYTETFKKHPKAKFTVDKKAGSPPEP" assembly_gap 4648176..4648211 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4648978..4648996 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4655239..4655280 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4711502..4711693 /estimated_length=192 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4738962..4738989 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4766408..4766525 /estimated_length=118 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4790353..4790382 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4818165..4818184 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4820591..4820628 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4831055..4831083 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4839614..4839882 /estimated_length=269 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4849147..4849163 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4852907..4852940 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4866441..4866500 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4886868..4886888 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4909002..4909520 /estimated_length=519 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4929347..4929514 /estimated_length=168 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4933378..4933464 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4967028..4967051 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4980637..4982705 /estimated_length=2069 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4986587..4987039 /estimated_length=453 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4990628..>4990924) /locus_tag="PAL_GLEAN10009002" mRNA complement(<4990628..>4990924) /locus_tag="PAL_GLEAN10009002" /product="hypothetical protein" CDS complement(4990628..4990924) /locus_tag="PAL_GLEAN10009002" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11838.1" /translation="MPASGATCNSHLPSALGVARGGSQGRRSLSHQEILLEPHCQQPG FNPSSATLGDGGVMGKSPKCLLHLTSPQVQEALERTVKTQCNIHQESSESDKEN" assembly_gap 5003834..5003971 /estimated_length=138 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5011132..5013337 /estimated_length=2206 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5015717..5015772 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5045291..5045567 /estimated_length=277 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5059252..5059291 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5063507..5065060 /estimated_length=1554 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5086784..5086820 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5095253..5095283 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5099532..>5101235 /locus_tag="PAL_GLEAN10009004" mRNA <5099532..>5101235 /locus_tag="PAL_GLEAN10009004" /product="hypothetical protein" CDS 5099532..5101235 /locus_tag="PAL_GLEAN10009004" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11839.1" /translation="MPVPSRHVNIGRSQSWDASGWFEGPWEMAEAPGRSRSLTDGGGE GPWYEPAPDLCREAFYGSGAGRKSSVPDFTFYDSRQAVMSTRGTLLPQDYYGNLSGAA RGPREPHHPRDPGLGRPLPGYGVLGGRMTWEHVQGRAPALQDPGPLYRDAGGRTATPG QRAQSRAPSPARYAVDPADGRYGVEAAPYAPGQVYNDVGDRPLDPAPARQAAPTCLVV DPTGAAASEGGPGLAPAALNRGYGQESVPSRMAYENCEADLSAFQEPGDRRGVRPEFL ALLRAEGVAEATLVALLQQGFDSPAVLATMEEADIKCVAPNLGQARVLSRLAGSCRTE MQLRRQGRAGPLPRTRSSSFSHRSEPHGDLSCLQPQPMGPLQAAPPRAADRARRPSSA PSQHLLEAAATYAAPGVGTQAAHLPSGSGCGSPTPCALTARLGPTCPPQAGVALPNPG PRTAYSTASTVPMELLKRERSMAASPLPSPHGSPQLLRKPGVPVEPSTLPPAGQSLHV PHSPYQKVARRTGAPIIVSTMLTPDPSNAPLPTSSRGVAAWRGHRPGHRTAGPHSPAA L" assembly_gap 5102269..5102478 /estimated_length=210 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5116258..>5126194 /locus_tag="PAL_GLEAN10009005" mRNA join(<5116258..5116395,5116747..5116891,5119408..5119614, 5122639..5122853,5123263..5123393,5123907..5124034, 5124456..5124573,5126014..>5126194) /locus_tag="PAL_GLEAN10009005" /product="C-terminal-binding protein 2" CDS join(5116258..5116395,5116747..5116891,5119408..5119614, 5122639..5122853,5123263..5123393,5123907..5124034, 5124456..5124573,5126014..5126194) /locus_tag="PAL_GLEAN10009005" /note="GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0051287 - NAD or NADH binding [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="C-terminal-binding protein 2" /protein_id="ELK11840.1" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="UniProtKB/Swiss-Prot:Q0VCQ1" /translation="MNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIH EKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGFDNVDVKAAGELGIAVCNIP SAAVEETADSTVCHILNLYRRTTWLYQALREGTRVQSVEQIREVASGAARIRGETLGL IGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGTERSLGVQRVYTLQDLLYQSDCVSLHC NLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESE PFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNK EFFVTTAPWSVMDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNL PTVAHPSQAPSPNQPTKHGDNREHPNEQ" gene complement(<5130537..>5172681) /locus_tag="PAL_GLEAN10009007" mRNA complement(join(<5130537..5130755,5131848..5132077, 5132187..5132316,5133342..5133462,5141267..5141465, 5142000..5142071,5143362..5143515,5148020..5148165, 5152031..5152152,5162126..5162186,5166496..5167346, 5172584..>5172681)) /locus_tag="PAL_GLEAN10009007" /product="Ubiquitin thioesterase ZRANB1" CDS complement(join(5130537..5130755,5131848..5132077, 5132187..5132316,5133342..5133462,5141267..5141465, 5142000..5142071,5143362..5143515,5148020..5148165, 5152031..5152152,5162126..5162186,5166496..5167346, 5172584..5172681)) /locus_tag="PAL_GLEAN10009007" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Ubiquitin thioesterase ZRANB1" /protein_id="ELK11841.1" /db_xref="InterPro:IPR001876" /db_xref="InterPro:IPR003323" /db_xref="UniProtKB/Swiss-Prot:Q9UGI0" /translation="MHVPYHPSFLYCDCRGTEAVEEVEVEEVGGSYSFLPDITHFKKC TMSERGIKWACEYCTYENWPSAIKCTMCRAQRPSGTIITEDPFKRGSSDVGRDWDPSS TEGGSSPLICPDSSARPRVKSSYSVENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRS PTESPQSSGSGSRPVAFSVDPCEEYNDRNKLNTRTQHWTCSICTYENWAKAKKCVVCD HPRPNNIEAIELAETEEASSIINEQDRARWRGSCSSGHSQRRSPPATKRDSEMKMDFQ RIELAGAVGSKEELEVDFKKVKQIKNRMKKTDWLFLNACVDSLRLDPAGANLTSRCQD KTEAPEIVPADSKSTLTPQHKACCDVTATIELQGSVELAHVGSGVVEGDLAAIEAYKS SXXXXPAAFDVGYTLVHLAIRFQRQDMLAILLTEVSQQAAKCIPAMVCPELTEQIRRE VAASLHQRKGDFACYFLTDLVTFTLPADIEDLPPTVQEKLFDEVLDRDVQKELEEESP IINWSLELATRLDSRLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCS HWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLASQPGASLEQTHIFVLAHI LRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRGHFSALV AMENDGYGNRGAGANLNTDDDVTITFLPLVDSERKLLHVHFLSAQELGNEEQRERLLR EWLDCCVTEGGALVAMQKSSRRRGHPLVTQMVDKWLDRYRQIRPCTSLSDGEEDEDDE DE" assembly_gap 5148108..5148118 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5186046..5186657 /estimated_length=612 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5205067..5205161 /estimated_length=95 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5205692..5205754 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5214989..5215010 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<5231484..>5254117) /locus_tag="PAL_GLEAN10009010" mRNA complement(join(<5231484..5231953,5233885..5233999, 5235544..5235628,5236110..5236229,5237308..5237498, 5242836..5242902,5245057..5245093,5250083..5250169, 5253865..>5254117)) /locus_tag="PAL_GLEAN10009010" /product="BRISC complex subunit Abro1" CDS complement(join(5231484..5231953,5233885..5233999, 5235544..5235628,5236110..5236229,5237308..5237498, 5242836..5242902,5245057..5245093,5250083..5250169, 5253865..5254117)) /locus_tag="PAL_GLEAN10009010" /codon_start=1 /product="BRISC complex subunit Abro1" /protein_id="ELK11842.1" /db_xref="InterPro:IPR023238" /db_xref="InterPro:IPR023240" /db_xref="UniProtKB/Swiss-Prot:A6QLR3" /translation="MQCGNRSDRLNLHFSALLEGRSGTRASPSEDFISQDASEQGRPE GCVPSAGHDGGVGDFHHGGFHFGLHLQRCVFPQRQQQRRPRFLLGEVRQEETFSISDS QISNTEFLQVIEIHNHQPCSKLFSFYDYASKVNEESLDRILKDRRKKVIGWYRFRRNT QQQMSYREQVLHKQLTRILGVPDLVFLLFSFISTANNSTHALEYVLFRPNRRFNQRIS LAIPNLGNTSQQEYKMSSVPNTSQSYAKVIKEHGTDFFDKDGVMKDIRAIYQVYNALQ EKVQAVCADVEKSERVVESCQAEVNKLRRQITQRKNEKEQERRSQQVMISRQVPTESL EPVFSPRMPYSGFAAEGRSTLGDAEASDPPPPYSDFHPNNQESTLSHSRMETSVFMPR PQAVGSSNYASSSAGLKYPGSGAALPPSQRAAGDSAEGSDDSDYENLIDPAEPTHSEY SHSRDSRPVTHPDGGSRNTQTSQI" assembly_gap 5254672..5254702 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5257410..>5278220 /locus_tag="PAL_GLEAN10009011" mRNA join(<5257410..5257519,5258677..5258742,5259267..5259381, 5271595..5271702,5274071..5274287,5277711..5277851, 5278126..>5278220) /locus_tag="PAL_GLEAN10009011" /product="Methyltransferase-like protein 10" CDS join(5257410..5257519,5258677..5258742,5259267..5259381, 5271595..5271702,5274071..5274287,5277711..5277851, 5278126..5278220) /locus_tag="PAL_GLEAN10009011" /note="GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="Methyltransferase-like protein 10" /protein_id="ELK11843.1" /db_xref="InterPro:IPR013216" /db_xref="UniProtKB/Swiss-Prot:Q9D853" /translation="MSADASGGDAAGVAARSGAVSPGGDGFAPSALGTQEHWDAVYER ELRTFQEYGDRGEIWFGEESMNRLIRWMQKHEIPLDASVLDIGTGNGVFLVELAKFGF SNITGIDYSPSAIQLSGSIIEKEGLSNIKLKVEDFLNLSTKLSGFHVCIDKGTFDAIS LNPDGAAEKRKQYVKSLSRVLNVKGFFLITSCNWTKEELLDEFSEVLSYVMGSAALLH TKPSAVPGTWWEYDGRFPPTSWWRRPKEVQGCRGGFELLEELPTPTFSFGGGSGSSVA ALVFQKT" assembly_gap 5290987..5292334 /estimated_length=1348 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5296448..5296481 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5310103..5310130 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5320823..5320883 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5323734..5323744 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5345128..>5393114 /locus_tag="PAL_GLEAN10009012" mRNA join(<5345128..5345169,5345554..5346288,5392752..>5393114) /locus_tag="PAL_GLEAN10009012" /product="Protein FAM53B" CDS join(5345128..5345169,5345554..5346288,5392752..5393114) /locus_tag="PAL_GLEAN10009012" /codon_start=1 /product="Protein FAM53B" /protein_id="ELK11844.1" /db_xref="UniProtKB/Swiss-Prot:Q14153" /translation="MLPKTAGARAGVEQVDQPSASIWECLPEQCQDGTLWHREAANTC TVTNLIKGLSLSDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRR CYSGGSVQRYSSGFGTMQRSSSFSLPSRANVLSSPYDPAGFHHRFGGQPCPGAPGSAT RGQAGDIWSPDANPAGGGRLDMQRSLSCSHERFSFAEYSAPSASSTPASTPELVRRPS GLARSRSQPCVLNDKKVGVKRRRPEEAQEQRPSLDLAKMAQNCQTFSSLSCLSAGMED CGPHSPFALHVSSTRSWTALLSASGPGGRTPAGTPVPEPPPPSFDEHLAYKEELYSEE SDGCTLDEGCGRGGEPASAWRDRGVAGGSPCSLDGELDIEQIENN" assembly_gap 5375417..5375430 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<5401145..>5519519) /locus_tag="PAL_GLEAN10009014" mRNA complement(join(<5401145..5401241,5461891..5461982, 5473287..5473379,5478532..5478595,5498166..5498319, 5501950..5502137,5519395..>5519519)) /locus_tag="PAL_GLEAN10009014" /product="Phospholysine phosphohistidine inorganic pyrophosphate phosphatase" CDS complement(join(5401145..5401241,5461891..5461982, 5473287..5473379,5478532..5478595,5498166..5498319, 5501950..5502137,5519395..5519519)) /locus_tag="PAL_GLEAN10009014" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="Phospholysine phosphohistidine inorganic pyrophosphate phosphatase" /protein_id="ELK11845.1" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR023214" /db_xref="UniProtKB/Swiss-Prot:Q0VD18" /translation="MAAWGERLAGVRGVLLDISGVLYDSGEGGGVPIAGSVEAVARLK QSRLKVRFCTNESQKSRGHLVGLLRHLGYDISEGEVTAPAPAACLILRERGLRPHLLV HDGVRSEFAQVDTSNPNCVVIADAGEDFSYQNMNKAFQVLMELENPVLISLGRGRYYK ETSGLMLDVGAYTKALEYACGIEAEVVGKPSPEFFKSALQQMGVEAHQAVMIGDDIVG DVGGAQRCGMRALQVRTGKFRPSDERHPEVKADGYVDNLAEAVDLLLQHADK" assembly_gap 5408834..5408991 /estimated_length=158 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5437840..5438716 /estimated_length=877 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5458053..5458174 /estimated_length=122 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5473825..5476313 /estimated_length=2489 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5479611..5480809 /estimated_length=1199 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5485340..5488615 /estimated_length=3276 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5489617..5493064 /estimated_length=3448 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5494966..5497365 /estimated_length=2400 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5504871..5506278 /estimated_length=1408 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5508614..5510644 /estimated_length=2031 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5526055..5527202 /estimated_length=1148 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5528368..5528411 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5528651..5528710 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5531935..5535069 /estimated_length=3135 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5544053..5544062 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5548169..5548445 /estimated_length=277 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5552729..>5565393 /locus_tag="PAL_GLEAN10009015" mRNA join(<5552729..5552927,5556602..5556826,5556933..5557028, 5560616..5560743,5561325..5561447,5562239..5562367, 5563134..5563247,5563966..5564110,5565233..>5565393) /locus_tag="PAL_GLEAN10009015" /product="Ornithine aminotransferase, mitochondrial" CDS join(5552729..5552927,5556602..5556826,5556933..5557028, 5560616..5560743,5561325..5561447,5562239..5562367, 5563134..5563247,5563966..5564110,5565233..5565393) /locus_tag="PAL_GLEAN10009015" /note="GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]" /codon_start=1 /product="Ornithine aminotransferase, mitochondrial" /protein_id="ELK11846.1" /db_xref="InterPro:IPR005814" /db_xref="InterPro:IPR015424" /db_xref="UniProtKB/Swiss-Prot:P04181" /translation="MFSKLAHFQTVAVLRRGVHSSVASATSVATKKTVQGPLSSDYVF ERESKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSAYSAVNQGHCHPKIVNALK SQADKLTLTSRAFYNDVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARRWGYTV KGIPKYKAKIVFAAGNFWGRTMSAISSSTDPNSYEGFGPFMPGFEIIPYNDLPALERV LQDPNIAAFMVEPVQGEAGVIVPDPGYLTGIRELCTRHQVLFIADEIQTGLARTGKWL AVDHENVRPDIVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTFGGNPLGCRVAM AALEVLEEENLVENADKMGTILRNELMKLPSDIVTAVRGKGLLNAIVIRETKDYDAWK VCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDEVRESMEIINKTILSF" assembly_gap 5558468..5559768 /estimated_length=1301 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5569589..5569675 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5594057..5594078 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5596130..5596314 /estimated_length=185 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5605641..5605716 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5626912..5626947 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5639147..5639270 /estimated_length=124 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5649236..5649260 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5682513..5682534 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5698059..5698338 /estimated_length=280 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5707236..5707280 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5710280..5710339 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5713970..5714742 /estimated_length=773 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5745135..5745157 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5748858..5748885 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5756921..5757295 /estimated_length=375 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5757677..5757959 /estimated_length=283 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5762595..5762653 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5771984..5772008 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<5788226..>5788735) /locus_tag="PAL_GLEAN10009017" mRNA complement(<5788226..>5788735) /locus_tag="PAL_GLEAN10009017" /product="hypothetical protein" CDS complement(5788226..5788735) /locus_tag="PAL_GLEAN10009017" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11847.1" /translation="MMGDRDSTRTGTGTGSAEARLVPSVGQEEGNGGVERQGARTEVG LLHASANKTLKLSRHGEWAGPDTQDAGAGAASTLSCSYGAEEQAWLWRTEVVAAIATI CTLTLQSHKGGASPARQQATVCGPSAEIPTPPQTRREHRASHAVSETVSLYVKHELGL PLSALTLTA" gene <5796754..>5826455 /locus_tag="PAL_GLEAN10009018" mRNA join(<5796754..5797299,5798006..5798345,5799869..5800015, 5802994..5803150,5817944..5818100,5824627..5824774, 5826265..>5826455) /locus_tag="PAL_GLEAN10009018" /product="Carbohydrate sulfotransferase 15" CDS join(5796754..5797299,5798006..5798345,5799869..5800015, 5802994..5803150,5817944..5818100,5824627..5824774, 5826265..5826455) /locus_tag="PAL_GLEAN10009018" /note="GO_function: GO:0008146 - sulfotransferase activity [Evidence IEA]" /codon_start=1 /product="Carbohydrate sulfotransferase 15" /protein_id="ELK11848.1" /db_xref="InterPro:IPR000863" /db_xref="UniProtKB/Swiss-Prot:Q7LFX5" /translation="MRHCVNCCIQLSPDDTHKQRIGCQGGPQHCCQECPTCKGENKIV FRVDGKQMNLLAVLEVRAEGSESWGGLLRFKKGKRCSLVFGLIIMTLVMASYILSGAH QELLISSPFHYGAFPSNPSLTDGENPSDMKEHHHQPSVNNISFIKDYPSIKLIINSIT ARIEFTTRQLPDIEDLKKQELHMFSVIPNKFLPNSKSPCWYEEFPGRNSTDPYVSNSY ALYSRRFRSTFDALRKAFWGHLSHAAGRHFRLRCLPHFYIIGQPKCGTTDLYDRLRLH PEVKFSAIKEPHWWTRKRFGIVRLRDGLRDRYPVEDYLDLFDLAAHQIHQGLQANSAK EHSKMNRIIIGEASASTMWDNNAWTFFYDNSTDGEPPFLTQDFIHAFQPDAKLIVMLR DPVERLYSDYLYFASSNKSADDFHEKVAEALQLFESCMLDYSLRACVYNNSLNNAMPV RLQVGLYAVYLLDWLTVFNKEQFLVLRLEDHASNVSYTMHRVFQFLSLGPLNEKQMAL MTKSPASNARRPEDRSLGPMWPVTQRILQDFYRPFNARLAQVLADKAFAWRKT" assembly_gap 5813672..5813715 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5819237..5819294 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <5830560..>5980444 /locus_tag="PAL_GLEAN10009019" mRNA join(<5830560..5830633,5834582..5834685,5896846..5896944, 5910919..5911028,5928175..5928314,5950414..5950498, 5951411..5951561,5958634..5958722,5965534..5965657, 5966895..5967091,5968113..5968292,5970965..5971262, 5975623..5975762,5976705..5976804,5980191..>5980444) /locus_tag="PAL_GLEAN10009019" /product="Inactive carboxypeptidase-like protein X2" CDS join(5830560..5830633,5834582..5834685,5896846..5896944, 5910919..5911028,5928175..5928314,5950414..5950498, 5951411..5951561,5958634..5958722,5965534..5965657, 5966895..5967091,5968113..5968292,5970965..5971262, 5975623..5975762,5976705..5976804,5980191..5980444) /locus_tag="PAL_GLEAN10009019" /note="GO_function: GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0007155 - cell adhesion [Evidence IEA]" /codon_start=1 /product="Inactive carboxypeptidase-like protein X2" /protein_id="ELK11849.1" /db_xref="InterPro:IPR000421" /db_xref="InterPro:IPR000834" /db_xref="InterPro:IPR008969" /db_xref="InterPro:IPR008979" /db_xref="UniProtKB/Swiss-Prot:Q8N436" /translation="MCKSACELLGSRIRSGLNAQGSAFPWPGGPELHGKQESEEPGTH SVPLLGAADLGCGSRGKNSNRKGVRTKSSEKAASDDHSIPVTRGDVRQGCPPLGLETL KITDFQLHASTVKRYGLGAHRGRLNIQAGINENDFYDGAWCAGRNDLHQWIEVDARRL TRFTGVITQGRNSLWLSDWVTSYKVMVSNDSHTWVTIKNGSGDMIFEGNSEKEIPVLN ELPVPTVARYIRVNPQSWFDSGSICMRLEILGCPLPDPNNYYHRRNEMTTTDNLDFKH HSYKEMRQLMKVVNGMCPNITRIYNIGKSHQGLKLYAVEISDHPGEHEVGEPEFHYVA GAHGNEVLGRELVLLLMQFLCQEYLARNARIVRLVEETRIHILPSLNPDGYEKAFEGG SELGGWSLGRWTHDGIDINNNFPDLNTLLWEAEDRQNIPRKVPNHHIAIPEWFLSENA TVAVETRAVIAWMEKIPFVLGGNLQGGELVVAYPYDMVRSLWKTQERTPTPDDHVFRW LAYSYASTHRLMTDARRRVCHTEDFQKEDGTVNGASWHTVAGSLNDFSYLHTNCFELS IYVGCDKYPHESELPEEWENNRESLIVFMEQVHRGIKGIVKDLHGKGIPGAVIAVEGV SHDIRTASDGDYWRLLNPGEYVVTAKAEGFTSSTKTCMVGYDMGATQCDFTLGKTNLA RIREIMERFGKQPVSLPARRPKLRGRKRRQRG" assembly_gap 5845523..5845861 /estimated_length=339 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5886594..5886682 /estimated_length=89 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5887015..5887461 /estimated_length=447 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5890579..5890791 /estimated_length=213 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5903548..5904229 /estimated_length=682 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5921333..5921382 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5922258..5925327 /estimated_length=3070 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 5974955..5974964 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6016974..6017021 /estimated_length=48 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<6020864..>6035139) /locus_tag="PAL_GLEAN10009024" mRNA complement(join(<6020864..6021095,6027751..6027864, 6034517..>6035139)) /locus_tag="PAL_GLEAN10009024" /product="Putative G-protein coupled receptor 26" CDS complement(join(6020864..6021095,6027751..6027864, 6034517..6035139)) /locus_tag="PAL_GLEAN10009024" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]" /codon_start=1 /product="Putative G-protein coupled receptor 26" /protein_id="ELK11850.1" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/Swiss-Prot:Q8NDV2" /translation="MAVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCSNLLCTVVN MPLTLAGVVAQRQPAGDRLCRLAAFLDTFLATNSMLSMAALSIDRWVAVVFPLSYRAK MRLRDAALMVAYTWLHALTFPATALALSWLGFHPLYASCTLCSWRPDERLRFAVFTGA FHTLSFLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDIHPSVRERCLEEQK RRRQRATKKISTFIGTFLVCFAPYVITRLVELSSTVPIGPHWGVLSKCLAYGKAASDP FVYSLLRHQYRNGCKEMLNRVLNRHPLHSSGLTGDSHSQNILPVSE" assembly_gap 6035146..6035451 /estimated_length=306 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6058613..6058625 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6068628..6068679 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6074707..6076152 /estimated_length=1446 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6096503..6097687 /estimated_length=1185 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6103221..6103642 /estimated_length=422 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6106179..6106192 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6153294..6154965 /estimated_length=1672 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6166157..6166219 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6167208..6167243 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6168077..6168149 /estimated_length=73 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6191312..6191322 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6219672..6219777 /estimated_length=106 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6228171..6228474 /estimated_length=304 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6238115..6238130 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6250422..6250470 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6278891..6278904 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6316550..6317307 /estimated_length=758 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6336661..6336672 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6337338..6338143 /estimated_length=806 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6380603..6381739 /estimated_length=1137 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<6402708..>6425980) /locus_tag="PAL_GLEAN10009026" mRNA complement(join(<6402708..6402900,6412085..6412301, 6412574..6412751,6414096..6414254,6416733..6416884, 6418589..6418658,6419200..6419394,6424230..6424678, 6425713..>6425980)) /locus_tag="PAL_GLEAN10009026" /product="Mitotic checkpoint protein BUB3" CDS complement(join(6402708..6402900,6412085..6412301, 6412574..6412751,6414096..6414254,6416733..6416884, 6418589..6418658,6419200..6419394,6424230..6424678, 6425713..6425980)) /locus_tag="PAL_GLEAN10009026" /note="GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="Mitotic checkpoint protein BUB3" /protein_id="ELK11851.1" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR011046" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019781" /db_xref="InterPro:IPR019782" /db_xref="InterPro:IPR020472" /db_xref="UniProtKB/Swiss-Prot:Q1JQB2" /translation="MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPAGWPARK RSLSVSSEEEEPDDGWKAPACFCPDPHGPKEPGPKHHPPIPFPCLGTPKGVGGAGPAS SERTPFLSPAHPDFKEEKERLLSAGSPSPRPERPRDGGAERQAGAAKKKTRTVFSRSQ VYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMA HASAQTLVGMPLVFRDSSLLRMTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDT SVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTH DAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVG TAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPS PEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRL CQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETKPKKVA MEMEDKYVNWALNSLSFVAAAHKVTIDPGYWQKCRMGSARWELGGPAFGFLYLCQWNM SR" assembly_gap 6408499..6409340 /estimated_length=842 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6411500..6411553 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6423956..6424134 /estimated_length=179 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6433329..6433391 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<6436380..>6495672) /locus_tag="PAL_GLEAN10009027" mRNA complement(join(<6436380..6437029,6437723..6437900, 6495595..>6495672)) /locus_tag="PAL_GLEAN10009027" /product="Homeobox protein HMX3" CDS complement(join(6436380..6437029,6437723..6437900, 6495595..6495672)) /locus_tag="PAL_GLEAN10009027" /note="GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="Homeobox protein HMX3" /protein_id="ELK11852.1" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR020479" /db_xref="UniProtKB/Swiss-Prot:P42581" /translation="MKQENKVVFLQNGHDTLLATLIVTSRGALEGAAGFALSQVGDLA FPRFEIPAQRFALPAHYLERSSAWWYPYTLTPAGGHLPRPEDSSPASGTDRDSPEPLL KADPDHKELDSKSPDEIILEESDSEEGKKEGEAAPGAAGASVGAAAAAPGAEDWKKGA ESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIW FQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQ PLLTFPHPVYYSHPVVSSVPLLRPV" assembly_gap 6437936..6438472 /estimated_length=537 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6438829..6438921 /estimated_length=93 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6472145..6472200 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6479272..6480488 /estimated_length=1217 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<6496973..>6508586) /locus_tag="PAL_GLEAN10009028" mRNA complement(join(<6496973..6497122,6502073..6502162, 6504560..6504640,6505845..6505973,6506692..6506859, 6507391..6507597,6508419..>6508586)) /locus_tag="PAL_GLEAN10009028" /product="Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial" CDS complement(join(6496973..6497122,6502073..6502162, 6504560..6504640,6505845..6505973,6506692..6506859, 6507391..6507597,6508419..6508586)) /locus_tag="PAL_GLEAN10009028" /note="GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]" /codon_start=1 /product="Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial" /protein_id="ELK11853.1" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR009100" /db_xref="UniProtKB/Swiss-Prot:P70584" /translation="MPSSVSGTPESFRPSSQRIVFGAHAISVPSLCGSAFIPAEFPVS LKPNCPSPDCSTMLAIDTDTKYTGTGASFFPSILVIEEVAKVDASVALLSDIQNTVIN GLIRKHGTEERKATCLIELAPEKIGSFCLSEAGAGSDSFTLKTRADKKGHYYVIGGSK MWVSSAEYTELFLVMVNVDPAGYKGITCFFVDRDTEDLHIGKTEKMGIRTSSTCSLTL KNVKAGVPEASILGQIGHGCKYAVGRLREDAARMPGPAQGCFDYTNPYIKERIRFGKR IFDFQVRYMKELQTSSRTPLRSTSMRNTTGAGPLPDVSEGDGGNLLIPQKKTVI" gene <6528121..>6532557 /locus_tag="PAL_GLEAN10009029" mRNA join(<6528121..6528253,6530221..6530403,6531611..>6532557) /locus_tag="PAL_GLEAN10009029" /product="Zinc finger protein Pegasus" CDS join(6528121..6528253,6530221..6530403,6531611..6532557) /locus_tag="PAL_GLEAN10009029" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Zinc finger protein Pegasus" /protein_id="ELK11854.1" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR015880" /db_xref="UniProtKB/Swiss-Prot:Q9H5V7" /translation="MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAESLQG AGTDGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIR IHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRK HKMVPIKGTRSSLGSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHE IPNIQTDSYESMAKTTSTGGGLPRDPQELLVDNPLNQLSTLAGQLSSLPPENQNPASP DVVPCADEKPFMLQQPPAQAAVSAAPVSVPHSSSPTSPEPRPTHSQRNYSPVAGPSSE PSAHTSTPSIGNSQPSTPAPTLPVQDPQLLHHCQHCDMYFADNILYTIHMGCHGYENP FQCNICGCKCKNKYDFACHFARGQHNQH" gene complement(<6536420..>6544343) /locus_tag="PAL_GLEAN10009030" mRNA complement(join(<6536420..6536619,6539410..6539503, 6540037..6540112,6542654..6542852,6543096..6543387, 6544128..>6544343)) /locus_tag="PAL_GLEAN10009030" /product="L-seryl-tRNA(Sec) kinase" CDS complement(join(6536420..6536619,6539410..6539503, 6540037..6540112,6542654..6542852,6543096..6543387, 6544128..6544343)) /locus_tag="PAL_GLEAN10009030" /codon_start=1 /product="L-seryl-tRNA(Sec) kinase" /protein_id="ELK11855.1" /db_xref="InterPro:IPR013641" /db_xref="UniProtKB/Swiss-Prot:Q8BP74" /translation="MKAGEDARGARGEGPRKLGLCVLCGLPAAGKSTFARALSHQLRL ERGWAAGVVAYDDVMPDAFLEKAGARPLPSQWKLLRQELLKYLEYFLLAVINGCQMAT PPNRTEAMWEDFITCLKEQDLISSAAPEAQSCYLLTKTALFRPLFLILDDNFYYQSMR YEVYQLARKYSLGFCQLFLDCSLETCLQRNGQRPRPLPAETIHLMGRKIEEPNPEKNA WEHNSLTIQSPACASEPSPELTDLLLAALENPVKYVEDNVEQKETDRTICSTNILHQA DQALRRIVSQAMKEAKDEQVLPYNLKLLAEELNKLKAELLEDLREGNRKYLCVQQTID ISDVISFFHYEKDNIVRKYFSKQH" assembly_gap 6548538..6548834 /estimated_length=297 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6560138..6560597 /estimated_length=460 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<6562554..>6572098) /locus_tag="PAL_GLEAN10009032" mRNA complement(join(<6562554..6562788,6564816..6565270, 6567378..6567584,6570059..6570128,6570950..6571153, 6571935..>6572098)) /locus_tag="PAL_GLEAN10009032" /product="hypothetical protein" CDS complement(join(6562554..6562788,6564816..6565270, 6567378..6567584,6570059..6570128,6570950..6571153, 6571935..6572098)) /locus_tag="PAL_GLEAN10009032" /codon_start=1 /product="hypothetical protein" /protein_id="ELK11856.1" /db_xref="UniProtKB/Swiss-Prot:Q9H8K7" /translation="METRVEDGGLTGRPTLVSSWDATCGALAQSLHVTGAGLGARDFD WEQLPAPPARGQDLVILKRSLNSQDENPCFLYLRCEPGGGEEIVSVGVLSSARNMEVY LGEEYCGTSRGENVCNVLDNSEHEIIFYKKYLKLESSTLACKIKLLSFGEKQCVFISK VVVHMRPVLASSSTSSPALGSRIDLERVQTIMESMGSKLSPGAQQLMSMVRFQQQNRA AIGEQLQSAWGRAACRRVADFRSPSPPAALGGSSSAPFPGRAGLTPGNVTEDVKAYVD GGTRPPGGGHAPSLEECKTVPPNRSLLESDLQNAASSFLPKKAGNNSSVPHSELLPFL QNLCGQFNHLRVGHNTQWPENVTKPGEGIVGVGMGEQPVCSYLEKILSKNMELMEKKL MDYIDQRIYRLQEHIDNKVALLMDVLQNPNSPPTGTPLRHCDSGERLSNGER" gene <6586961..>6589175 /locus_tag="PAL_GLEAN10009033" mRNA join(<6586961..6587042,6589021..>6589175) /locus_tag="PAL_GLEAN10009033" /product="CUB and zona pellucida-like domain-containing protein 1" CDS join(6586961..6587042,6589021..6589175) /locus_tag="PAL_GLEAN10009033" /codon_start=1 /product="CUB and zona pellucida-like domain-containing protein 1" /protein_id="ELK11857.1" /db_xref="UniProtKB/Swiss-Prot:Q86UP6" /translation="MEAMRSLIPLVLLIVSCLAEFNLTQSEGKSSCRASLGGASQSEI HKAFILQLNSDEDCAWTLERPENKSTRIVFSHFQ" gene <6592848..>6598066 /locus_tag="PAL_GLEAN10009034" mRNA join(<6592848..6592925,6593497..6593731,6594193..6594365, 6595366..6595757,6596507..6596775,6597894..>6598066) /locus_tag="PAL_GLEAN10009034" /product="CUB and zona pellucida-like domain-containing protein 1" CDS join(6592848..6592925,6593497..6593731,6594193..6594365, 6595366..6595757,6596507..6596775,6597894..6598066) /locus_tag="PAL_GLEAN10009034" /codon_start=1 /product="CUB and zona pellucida-like domain-containing protein 1" /protein_id="ELK11858.1" /db_xref="InterPro:IPR000859" /db_xref="InterPro:IPR001507" /db_xref="InterPro:IPR017976" /db_xref="UniProtKB/Swiss-Prot:Q86UP6" /translation="MGRNSSDKGENLSVLPFRKREMKLNSTPCSSSLEVDEQCRFDFV AVYDGSSTTSGLIGQVCGRVRPTFESSSDSLTVVLSTDYANSYRGFSASYTSIYTETV NTTSLTCSSDKMRAIINKSYLESLRYNEINLKLNDPTCRPKISNVVEFSIPLDGCGTI KKVEDHSITYTNIITFTTFSTSDVITRQKQFQIIVKCEMEYNSTVEMMYITEDDVIQN QSALGKYNTSMALFESESFEKPIQKSPYYVDLNQTLFVQVSLQASDPNLVVFLDTCSA SPTPDFASPTYDLIESGCNRDETCEVYPLSGHYGRFHFNAFKFLKSLSSVYLQCKVLI CDSGDNQSRCSQGCISRRKRDISSYKWKTDAIIGPIRLKRDRRASANSGFQYQNHGDD TQNQPFNSLHLFSFVVLALNVVIVATVVVRHFVTRRTAYNYQKLQDC" gene complement(<6598489..>6713380) /locus_tag="PAL_GLEAN10009035" mRNA complement(join(<6598489..6598688,6599728..6599906, 6602269..6602651,6604496..6604724,6615321..6615407, 6618808..6619207,6621245..6621550,6623310..6623624, 6625463..6625774,6633205..6633516,6634233..6634450, 6637460..6637613,6639653..6639970,6640750..6640967, 6642455..6642608,6646056..6646088,6646703..6647020, 6649083..6649400,6652023..6652213,6654270..6654417, 6655671..6655709,6656997..6657380,6660303..6660374, 6663014..6663142,6663214..6663531,6664259..6664321, 6670424..6670477,6677204..6677266,6679061..6679375, 6712966..>6713380)) /locus_tag="PAL_GLEAN10009035" /product="Deleted in malignant brain tumors 1 protein" CDS complement(join(6598489..6598688,6599728..6599906, 6602269..6602651,6604496..6604724,6615321..6615407, 6618808..6619207,6621245..6621550,6623310..6623624, 6625463..6625774,6633205..6633516,6634233..6634450, 6637460..6637613,6639653..6639970,6640750..6640967, 6642455..6642608,6646056..6646088,6646703..6647020, 6649083..6649400,6652023..6652213,6654270..6654417, 6655671..6655709,6656997..6657380,6660303..6660374, 6663014..6663142,6663214..6663531,6664259..6664321, 6670424..6670477,6677204..6677266,6679061..6679375, 6712966..6713380)) /locus_tag="PAL_GLEAN10009035" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005044 - scavenger receptor activity [Evidence IEA]" /codon_start=1 /product="Deleted in malignant brain tumors 1 protein" /protein_id="ELK11859.1" /db_xref="InterPro:IPR000859" /db_xref="InterPro:IPR001190" /db_xref="InterPro:IPR001507" /db_xref="InterPro:IPR017448" /db_xref="UniProtKB/Swiss-Prot:Q9UGM3" /translation="MSGSHVQKEGKRGEAGGVGVEDGLGGSTPHTPKSQGAQRAGKSE RVTVLFFQVREGRDLPILPSAVAPHRPLQSTPFPLPVVYLQCRVVVCRAYDYSSRCHR GCVVRAKRDVGSYQQKVDVILGPIRLQAPHAKKRSLGWPQLQLVSGSGRCSGRVEVFY RGQWGKVCDDHWDMNDAEVVCRQLNCGQALAAPGEAEFGEGEGKFLLNDVDCTGRESF LGQCPHAGWSLHNCGPGEEAGVVCSAIESSTPLPEESAEESLSMPQVLSTSTVPEDAN HPTTASADRFLETLLTAAPETWTPPPAGAPMAVRLMNGTGRCSGRVEVLVQGTWGTVC DDLWDLAEATVVCHQLQCGQAVAAPAGAHFGAGSGKIVLDDVQCVGTESHLGQCRHRD EAGHNCGHLEDAGVICTGSGKIVLDDVQCVGTESHLGQCRHRDEAGHNCGHLEDAGVI CTAYEDSLPTSSVTSVAQHSPSSVPPGRGSFPELTPCSSSGGWVPVSLVGSHGSCTGS LRSVTSKHHLQAAGVQLGHFSPPEAHFGKGSGKILLDSMHCRGDRQHLGDCSHVGRFS HNCGHGEDASVICSGKPQLPAQAELALALPERVVFKKQCRPLAAMAETIPIEKSHCGG IIINTSGAIRKPPQSARHDNITCVWEIRANASNHVLLAFPYLDLNCTNEYFEILDGPP SLAKSLGKTCSGSYLIYESSSSSMTVKYFRSFNNTGKNFIAYYYSAAKGDWPELRLVG GSGRCSGRVEVLHQGTWGTVCDDLWDLNEAEVVCRQLGCGRAVSALGKAHFGPGSGEI LLDNLQCAGVERYLGQCAHSGWAEHNCGHHEDAGVTCSGDWPELRLVGGSGRCSGRVE VLHQGTWGTVCDDLWDLNEAEVVCRQLGCGRAVSALGKAHFGPGSGEILLDNLQCAGV ESYLGQCAHSGWAEHNCGHHEDASVICSDAEDLPPPTPPGGQTFCGGVISSLSGSFSS PRYPDNYPTDVQCVWEIHVDKRFRIKLMIPSLKLEDILGCPYDSVEIFDGPRIPSLSM GKFCAPVAVMFFSSSDIMTVVFQSDSVTTNTGFHALFDVIPQDKGESEDGPELRLVGG SGRCSGRLEIFHRGVWGTVCDDLWDLNEAKVVCRQLGCGRAIAAPGNARFGPGSGDIL LDNLQCLGSENHLGQCPSSSWSDHNCGHHEDASVVCSGGSNSCGGVISSLSGSFSSPW YPTNYPTNVECVWVVHLAEKFHIELMIPSLKLEDVYGCPYDFIEVFDGRQVASLSMGR FCAGEELTFLSSSNIMTVVFRSDAMITNTGFYALYNGLRQDGRETGVSLRLVNGSHRC EGRVEVFYNGTWGTVCDDNWDLMDARVVCQQLGCGEALSAPARSYFDGGTGHIMLDDV RCTGNEAEVWQCTHSGWFSHNCGHHEDASAICLGLGLRLVNGSSRCEGRVEVYHADTW GTVCDDGWAIEDARVVCRQLGCGLVVSALPGASFGPGSGHIVLDDVNCTGSESSLGQC PHGGWFTHNCGHHEDAGVICSDLPVVRLANGRSGCEGRVEIQHNGTWGTVCDDLWGLP AAQVVCRQLGCGVALEAPRNSLFGDGSGPIFLNNVSCVGNETSLGQCYHLGLSVHNCG HHKDAGVVCSVIRLVDGRSRCEGRLEVYHNGTWGTVCDDLWGIGAAHVVCRQLDCGEG VSALGSSHFGAGAGSILLDDVQCQGNETTLGQCQHLGLSVHNCGHQEDAGVICSGRRE DRESKAQGEQDPICRIFARSAPYSRETGSSGAALRTGTLHLRGEKERARRGMETLGEE GRPGGDGGPGGALGSSSLESRKSSQASRTVLRWPLFTSPVSYRSLCLYGWLIEALFFF IYSFNHNCRDLRTRSLCLYGWLIEALFFFIYSFNHNCRDLRTRPVYQVLCVSFSPPPP PAAQLSCLTHLFQVVIDRGYLRRLGYSSWDVHLNDELCRPQVTGRYLIFSIPYGRCGT VQQESLGSRSYSNSIRGRMSGHPSRVIVRHKVPQLKLTCRADGQSAIEIVPGADVPRQ GAGYDVSISFLELPVAQPAGSRGPYYARQRNEVFLQATVRSPNPSLRVFVDTCVASPD PRDFTTVKYDLIRQGCIKDNTYVNLHSHQKNMAQFKFNAFSFLSSYDVVYLQCKVAVC KVRDHSSRCSQGCVGRVVNERRIVVLSINQAIRKSPFKVRFFVPVPFSGCLRCDVLRL YIYAVRPMTQGDVNSRCHDSTFMQ" assembly_gap 6599674..6599710 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6606977..6607106 /estimated_length=130 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6611967..6613827 /estimated_length=1861 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6614320..6614651 /estimated_length=332 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6616138..6618138 /estimated_length=2001 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6628279..6632500 /estimated_length=4222 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6661184..6661885 /estimated_length=702 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6717999..6718032 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6718688..6718707 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6721661..6721683 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6725526..6726290 /estimated_length=765 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6728048..6729065 /estimated_length=1018 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 6732363..6734467 /estimated_length=2105 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(ALWS01047052.1:1..13992,gap(139),ALWS01047053.1:1..27545, gap(49),ALWS01047054.1:1..6353,gap(642),ALWS01047055.1:1..11710, gap(402),ALWS01047056.1:1..2562,gap(1357),ALWS01047057.1:1..17867, gap(203),ALWS01047058.1:1..682,gap(348),ALWS01047059.1:1..12337, gap(431),ALWS01047060.1:1..10904,gap(952),ALWS01047061.1:1..232, gap(118),ALWS01047062.1:1..2951,gap(462),ALWS01047063.1:1..1203, gap(66),ALWS01047064.1:1..22613,gap(58),ALWS01047065.1:1..12957, gap(488),ALWS01047066.1:1..8126,gap(20),ALWS01047067.1:1..8486, gap(91),ALWS01047068.1:1..4839,gap(155),ALWS01047069.1:1..18807, gap(148),ALWS01047070.1:1..3195,gap(49),ALWS01047071.1:1..4763, gap(129),ALWS01047072.1:1..5845,gap(158),ALWS01047073.1:1..2353, gap(39),ALWS01047074.1:1..624,gap(253),ALWS01047075.1:1..3117, gap(237),ALWS01047076.1:1..6676,gap(40),ALWS01047077.1:1..1449, gap(115),ALWS01047078.1:1..6310,gap(946),ALWS01047079.1:1..1428, gap(87),ALWS01047080.1:1..2850,gap(149),ALWS01047081.1:1..7899, gap(35),ALWS01047082.1:1..4337,gap(512),ALWS01047083.1:1..9348, gap(79),ALWS01047084.1:1..4724,gap(139),ALWS01047085.1:1..370, gap(30),ALWS01047086.1:1..8562,gap(546),ALWS01047087.1:1..4481, gap(156),ALWS01047088.1:1..244,gap(14),ALWS01047089.1:1..5868, gap(71),ALWS01047090.1:1..1850,gap(95),ALWS01047091.1:1..4135, gap(15),ALWS01047092.1:1..3777,gap(68),ALWS01047093.1:1..8743, gap(71),ALWS01047094.1:1..486,gap(222),ALWS01047095.1:1..26200, gap(1282),ALWS01047096.1:1..13015,gap(51),ALWS01047097.1:1..7424, gap(77),ALWS01047098.1:1..281,gap(46),ALWS01047099.1:1..9009, gap(23),ALWS01047100.1:1..2092,gap(1072),ALWS01047101.1:1..1947, gap(29),ALWS01047102.1:1..3623,gap(11),ALWS01047103.1:1..883, gap(32),ALWS01047104.1:1..729,gap(14),ALWS01047105.1:1..4683, gap(34),ALWS01047106.1:1..6359,gap(348),ALWS01047107.1:1..8299, gap(253),ALWS01047108.1:1..4599,gap(132),ALWS01047109.1:1..284, gap(416),ALWS01047110.1:1..1575,gap(79),ALWS01047111.1:1..1071, gap(1063),ALWS01047112.1:1..2264,gap(98),ALWS01047113.1:1..1987, gap(123),ALWS01047114.1:1..2676,gap(41),ALWS01047115.1:1..297, gap(1157),ALWS01047116.1:1..234,gap(886),ALWS01047117.1:1..1323, gap(588),ALWS01047118.1:1..9894,gap(63),ALWS01047119.1:1..3577, gap(100),ALWS01047120.1:1..13513,gap(583),ALWS01047121.1:1..7714, gap(102),ALWS01047122.1:1..4091,gap(157),ALWS01047123.1:1..9793, gap(52),ALWS01047124.1:1..613,gap(20),ALWS01047125.1:1..11776, gap(65),ALWS01047126.1:1..11605,gap(296),ALWS01047127.1:1..732, gap(45),ALWS01047128.1:1..1006,gap(165),ALWS01047129.1:1..4873, gap(23),ALWS01047130.1:1..4301,gap(156),ALWS01047131.1:1..752, gap(57),ALWS01047132.1:1..601,gap(53),ALWS01047133.1:1..3776, gap(18),ALWS01047134.1:1..3027,gap(53),ALWS01047135.1:1..1597, gap(74),ALWS01047136.1:1..9652,gap(2755),ALWS01047137.1:1..2316, gap(58),ALWS01047138.1:1..622,gap(205),ALWS01047139.1:1..4167, gap(202),ALWS01047140.1:1..5249,gap(172),ALWS01047141.1:1..2571, gap(118),ALWS01047142.1:1..5949,gap(71),ALWS01047143.1:1..500, gap(34),ALWS01047144.1:1..5292,gap(10),ALWS01047145.1:1..5468, gap(44),ALWS01047146.1:1..200,gap(622),ALWS01047147.1:1..22273, gap(50),ALWS01047148.1:1..2262,gap(654),ALWS01047149.1:1..10144, gap(17),ALWS01047150.1:1..9923,gap(65),ALWS01047151.1:1..3026, gap(207),ALWS01047152.1:1..15551,gap(576),ALWS01047153.1:1..4434, gap(1647),ALWS01047154.1:1..2808,gap(725),ALWS01047155.1:1..8636, gap(12),ALWS01047156.1:1..230,gap(66),ALWS01047157.1:1..270, gap(18),ALWS01047158.1:1..981,gap(61),ALWS01047159.1:1..2450, gap(423),ALWS01047160.1:1..3800,gap(385),ALWS01047161.1:1..3030, gap(42),ALWS01047162.1:1..778,gap(768),ALWS01047163.1:1..2712, gap(294),ALWS01047164.1:1..6010,gap(371),ALWS01047165.1:1..2708, gap(66),ALWS01047166.1:1..7606,gap(234),ALWS01047167.1:1..6394, gap(151),ALWS01047168.1:1..1473,gap(25),ALWS01047169.1:1..1349, gap(270),ALWS01047170.1:1..18145,gap(172),ALWS01047171.1:1..21708, gap(12),ALWS01047172.1:1..339,gap(37),ALWS01047173.1:1..219, gap(1295),ALWS01047174.1:1..3791,gap(26),ALWS01047175.1:1..9478, gap(53),ALWS01047176.1:1..945,gap(79),ALWS01047177.1:1..2759, gap(57),ALWS01047178.1:1..3441,gap(606),ALWS01047179.1:1..1220, gap(34),ALWS01047180.1:1..1160,gap(27),ALWS01047181.1:1..10942, gap(75),ALWS01047182.1:1..3462,gap(1444),ALWS01047183.1:1..6328, gap(578),ALWS01047184.1:1..577,gap(578),ALWS01047185.1:1..5125, gap(93),ALWS01047186.1:1..8327,gap(309),ALWS01047187.1:1..2495, gap(44),ALWS01047188.1:1..2157,gap(1107),ALWS01047189.1:1..3033, gap(59),ALWS01047190.1:1..498,gap(303),ALWS01047191.1:1..2843, gap(187),ALWS01047192.1:1..2426,gap(117),ALWS01047193.1:1..5494, gap(258),ALWS01047194.1:1..8068,gap(1036),ALWS01047195.1:1..14917, gap(71),ALWS01047196.1:1..12204,gap(66),ALWS01047197.1:1..6065, gap(676),ALWS01047198.1:1..5205,gap(273),ALWS01047199.1:1..444, gap(341),ALWS01047200.1:1..4711,gap(134),ALWS01047201.1:1..2334, gap(11),ALWS01047202.1:1..3865,gap(3336),ALWS01047203.1:1..1256, gap(17),ALWS01047204.1:1..5002,gap(119),ALWS01047205.1:1..10506, gap(697),ALWS01047206.1:1..574,gap(498),ALWS01047207.1:1..3479, gap(181),ALWS01047208.1:1..817,gap(650),ALWS01047209.1:1..4299, gap(272),ALWS01047210.1:1..1512,gap(1120),ALWS01047211.1:1..2248, gap(482),ALWS01047212.1:1..13555,gap(80),ALWS01047213.1:1..2394, gap(316),ALWS01047214.1:1..7036,gap(1639),ALWS01047215.1:1..5919, gap(3333),ALWS01047216.1:1..2635,gap(55),ALWS01047217.1:1..12270, gap(358),ALWS01047218.1:1..2908,gap(14),ALWS01047219.1:1..2413, gap(54),ALWS01047220.1:1..5578,gap(441),ALWS01047221.1:1..2193, gap(105),ALWS01047222.1:1..372,gap(301),ALWS01047223.1:1..2223, gap(798),ALWS01047224.1:1..3400,gap(818),ALWS01047225.1:1..2819, gap(83),ALWS01047226.1:1..28790,gap(135),ALWS01047227.1:1..1808, gap(897),ALWS01047228.1:1..665,gap(81),ALWS01047229.1:1..281, gap(234),ALWS01047230.1:1..16998,gap(10),ALWS01047231.1:1..9528, gap(13),ALWS01047232.1:1..957,gap(41),ALWS01047233.1:1..1682, gap(50),ALWS01047234.1:1..4204,gap(951),ALWS01047235.1:1..9991, 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