LOCUS JX982232 3895 bp DNA linear BCT 02-JAN-2014 DEFINITION Pseudomonas aeruginosa In-p110 integron integrase type 1 (intI1) gene, partial cds, and aminoglycoside acetyltransferase (aacA4), hypothetical protein (orf105/orfD fusion), metallo-beta-lactamase IMP-7 (blaIMP-7), aminoglycoside acetyltransferase (aacA4), class D beta-lactamase OXA-2 (blaOXA-2), and hypothetical protein (orfE-like) genes, complete cds. ACCESSION JX982232 VERSION JX982232.1 KEYWORDS . SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 3895) AUTHORS Papagiannitsis,C.C., Studentova,V., Ruzicka,F., Tejkalova,R. and Hrabak,J. TITLE Molecular characterization of metallo-beta-lactamase-producing Pseudomonas aeruginosa in a Czech hospital (2009-2011) JOURNAL J. Med. Microbiol. 62 (PT 6), 945-947 (2013) PUBMED 23493029 REFERENCE 2 (bases 1 to 3895) AUTHORS Papagiannitsis,C.C., Studentova,V., Ruzicka,F., Tejkalova,R. and Hrabak,J. TITLE Direct Submission JOURNAL Submitted (17-OCT-2012) Department of Microbiology, Faculty of Medicine and University Hospital in Plzen, Alej Svobody 80, Plzen, Plzen 30460, Czech Republic FEATURES Location/Qualifiers source 1..3895 /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="110" /db_xref="taxon:287" mobile_element <1..>3895 /note="class I integron" /mobile_element_type="integron:In-p110" gene complement(<1..119) /gene="intI1" CDS complement(<1..119) /gene="intI1" /codon_start=1 /transl_table=11 /product="integrase type 1" /protein_id="AGC39276.1" /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLPTEQAYVH" misc_recomb 204..261 /note="attI1 recombination site" gene 280..834 /gene="aacA4" CDS 280..834 /gene="aacA4" /note="AAC(6)-Ib" /codon_start=1 /transl_table=11 /product="aminoglycoside acetyltransferase" /protein_id="AGC39277.1" /translation="MTNSNDSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLA DVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDQL LANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFEKQGTV TTPDGPAVYMVQTRQAFERTRSDA" misc_recomb 829..900 /note="aacA4 gene cassette 59-base element" gene 885..1181 /gene="orf105/orfD fusion" CDS 885..1181 /gene="orf105/orfD fusion" /note="Orf105/OrffD fusion protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AGC39279.1" /translation="MSNVSPFIFRFMQACIDSSASPFSKVSPWEFWRLAGLRLRSLGR FQAFWASGACVASAASYHSCSAAPLPWPSAFSNPVGSNISVKPTRILRSAYLAR" misc_recomb 1130..1189 /note="orf105/orfD gene cassette 59-base element" gene 1194..1934 /gene="blaIMP-7" CDS 1194..1934 /gene="blaIMP-7" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase IMP-7" /protein_id="AGC39278.1" /translation="MKKLSVFFMFLFCSIAASGEALPDLKIEKLDEGVYVHTSFEEVN GWGVVPKHGLVVLVNTDAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTG GIEWLNSQSIPTYASELTNELLKKDGKVQAKNSFSGASYWLVKKKIEIFYPGPGHTPD NVVVWLPEHRVLFGGCFVKPYGLGNLGDANLEAWPKSAKLLVSKYGKAKLVVPSHSEV GDASLLKRTLEQAVKGLNESKKLSKPSN" misc_recomb 1937..2071 /note="blaIMP-7 gene cassette 59-base element" gene 2090..2644 /gene="aacA4" CDS 2090..2644 /gene="aacA4" /note="AAC(6)-Ib" /codon_start=1 /transl_table=11 /product="aminoglycoside acetyltransferase" /protein_id="AGC39280.1" /translation="MTNSNDSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLA DVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDQS LANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTV TTPDGPAVYMVQTRQAFERTRSDA" misc_recomb 2639..2710 /note="aacA4 gene cassette 59-base element" gene 2726..3553 /gene="blaOXA-2" CDS 2726..3553 /gene="blaOXA-2" /codon_start=1 /transl_table=11 /product="class D beta-lactamase OXA-2" /protein_id="AGC39281.1" /translation="MAIRIFAILFSIFSLATFAHAQEGTLERSDWRKFFSEFQAKGTI VVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALDAGAVRDEFQIFRWDGVNR GFAGHNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNADPSTSNGDYWI EGSLAISAQEQIAFLRKLYRNELPFRVEHQRLVKDLMIVEAGRNWILRAKTGWEGRMG WWVGWVEWPTGSVFFALNIDTPNRMDDLFKREAIVRAILRSIEALPPNPAVNSDAAR" misc_recomb 3517..3580 /note="blaOXA-2 gene cassette 59-base element" gene 3601..3843 /gene="orfE-like" CDS 3601..3843 /gene="orfE-like" /note="OrfE-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AGC39282.1" /translation="MRAAIPSSASPCSQGFQAFLAASACAASAGSYPCCSAAPLRWPS AFSWSAPFSNAGRSFLAFGSNSAVKRTASPPLTLGR" misc_recomb 3789..3845 /note="orfE-like gene cassette 59-base element" misc_feature 3840..>3895 /note="3'-conserved segment" BASE COUNT 955 a 944 c 1028 g 968 t ORIGIN 1 cagtggacat aagcctgttc ggttggtaag ctgtaatgca agtagcgtat gcgctcacgc 61 aactggtcca gaaccttgac cgaacgcagc ggtggtaacg gcgcagtggc ggttttcatg 121 gcttgttatg actgtttttt tgtacagtct atgcctcggg catccaagca gcaagcgcgt 181 tacgccgtgg gtcgatgttt gatgttatgg agcagcaacg atgttacgca gcagggcagt 241 cgccctaaaa caaagttagg catcacaaag tacagcatcg tgaccaacag caacgattcc 301 gtcacactgc gcctcatgac tgagcatgac cttgcgatgc tctatgagtg gctaaatcga 361 tctcatatcg tcgagtggtg gggcggagaa gaagcacgcc cgacacttgc tgacgtacag 421 gaacagtact tgccaagcgt tttagcgcaa gagtccgtca ctccatacat tgcaatgctg 481 aatggagagc cgattgggta tgcccagtcg tacgttgctc ttggaagcgg ggacggatgg 541 tgggaagaag aaaccgatcc aggagtacgc ggaatagacc agttactggc gaatgcatca 601 caactgggca aaggcttggg aaccaagctg gttcgagctc tggttgagtt gctgttcaat 661 gatcccgagg tcaccaagat ccaaacggac ccgtcgccga gcaacttgcg agcgatccga 721 tgctacgaga aagcggggtt tgagaagcaa ggtaccgtaa ccaccccaga tggtccagcc 781 gtgtacatgg ttcaaacacg ccaggcattc gagcgaacac gcagtgatgc ctaacccttc 841 catcgagggg gacgtccaag ggctggcgcc cttggccgcc cctcatgtca aacgttagtc 901 ccttcatatt ccgctttatg caggcctgca ttgattccag cgcttcacct ttctccaagg 961 tttctccttg ggagttttgg cgccttgctg ggcttcgcct gcgttcgctt ggtcggtttc 1021 aagccttttg ggcctctggt gcttgtgtag caagcgctgc tagctatcat tcttgcagcg 1081 ctgcgccgct tccgtggccc agcgcttttt caaaccccgt cggctctaac atttcggtca 1141 agccgacccg cattctgcgg tcggcttacc tcgcccgtta gaaaagggaa agtatgaaaa 1201 agttatcagt attctttatg tttttgtttt gtagcattgc tgcctcagga gaggctttgc 1261 cagatttaaa aattgagaag cttgacgaag gcgtttatgt tcatacttcg tttgaggaag 1321 ttaacggctg gggcgtggtt cctaaacacg gcttggtggt tcttgtaaat actgacgctt 1381 atttgattga cactccattt acagctaaag atactgaaaa gttagttact tggtttgtag 1441 agcgcggcta taaaataaaa ggcagtatct cctctcattt tcatagcgac agcacgggcg 1501 gaatagagtg gcttaattct caatctattc caacatatgc atctgaatta acaaatgaac 1561 ttcttaaaaa agacggtaag gtacaagcta aaaattcatt tagcggagcc agctattggt 1621 tagttaagaa aaagattgaa attttttatc ctggcccagg gcacactcca gataacgtag 1681 tggtttggct acctgaacat agagttttgt ttggtggttg ttttgttaaa ccgtatggtc 1741 taggtaattt gggtgacgca aatttagaag cttggccaaa gtctgccaaa ttattagtgt 1801 ccaaatatgg taaggcaaaa ctggttgttc caagtcacag tgaagttgga gatgcatcac 1861 tcttgaaacg tacattagaa caggctgtta aaggattaaa cgaaagtaaa aagctatcaa 1921 aaccaagtaa ctaaatttct aacaagtcgt tgcagcaccg ttccgcttcg ctccactgga 1981 cagtttttaa attgcggttt tatggttttg ctgcgcaaaa gtattccata aaaccacaac 2041 ttaaaaactg ccgctgaact cggcgttagg catcacaaag tacagcatcg tgaccaacag 2101 caacgattcc gtcacactgc gcctcatgac tgagcatgac cttgcgatgc tctatgagtg 2161 gctaaatcga tctcatatcg tcgagtggtg gggcggagaa gaagcacgcc cgacacttgc 2221 tgacgtacag gaacagtact tgccaagcgt tttagcgcaa gagtccgtca ctccatacat 2281 tgcaatgctg aatggagagc cgattgggta tgcccagtcg tacgttgctc ttggaagcgg 2341 ggacggatgg tgggaagaag aaaccgatcc aggagtacgc ggaatagacc agtcactggc 2401 gaatgcatca caactgggca aaggcttggg aaccaagctg gttcgagctc tggttgagtt 2461 gctgttcaat gatcccgagg tcaccaagat ccaaacggac ccgtcgccga gcaacttgcg 2521 agcgatccga tgctacgaga aagcggggtt tgagaggcaa ggtaccgtaa ccaccccaga 2581 tggtccagcc gtgtacatgg ttcaaacacg ccaggcattc gagcgaacac gcagtgatgc 2641 ctaacccttc catcgagggg gacgtccaag ggctggcgcc cttggccgcc cctcatgtca 2701 aacgttgggc attaaggaaa agttaatggc aatccgaatc ttcgcgatac ttttctccat 2761 tttttctctt gccactttcg cgcatgcgca agaaggcacg ctagaacgtt ctgactggag 2821 gaagtttttc agcgaatttc aagccaaagg cacgatagtt gtggcagacg aacgccaagc 2881 ggatcgtgcc atgttggttt ttgatcctgt gcgatcgaag aaacgctact cgcctgcatc 2941 gacattcaag atacctcata cactttttgc acttgatgca ggcgctgttc gtgatgagtt 3001 ccagattttt cgatgggacg gcgttaacag gggctttgca ggccacaatc aagaccaaga 3061 tttgcgatca gcaatgcgga attctactgt ttgggtgtat gagctatttg caaaggaaat 3121 tggtgatgac aaagctcggc gctatttgaa gaaaatcgac tatggcaacg ccgatccttc 3181 gacaagtaat ggcgattact ggatagaagg cagccttgca atctcggcgc aggagcaaat 3241 tgcatttctc aggaagctct atcgtaacga gctgcccttt cgggtagaac atcagcgctt 3301 ggtcaaggat ctcatgattg tggaagccgg tcgcaactgg atactgcgtg caaagacggg 3361 ctgggaaggc cgtatgggtt ggtgggtagg atgggttgag tggccgactg gctccgtatt 3421 cttcgcactg aatattgata cgccaaacag aatggatgat cttttcaaga gggaggcaat 3481 cgtgcgggca atccttcgct ctattgaagc gttaccgccc aacccggcag tcaactcgga 3541 cgctgcgcga taaaaccgcg cagcgccggt tacttcaacg ttagtcccat caaacgctct 3601 atgcgcgcag ccattccttc cagcgcttcg ccctgttcgc agggctttca agcctttttg 3661 gccgctagcg cttgtgcagc aagcgcgggc agctatcctt gttgcagcgc tgcgccgctc 3721 cggtggccca gcgctttttc gtggtctgcg cccttctcca acgctgggcg ctcctttttg 3781 gccttcgggt ctaactctgc ggtcaagcgg acggcttcgc cgccgcttac cttgggccgt 3841 tagatgcact aagcacataa ttgctcacag ccaaactatc aggtcaagtc tgctt //