LOCUS JU321769 4069 bp mRNA linear TSA 04-NOV-2014 DEFINITION TSA: Macaca mulatta Mamu_512026 mRNA sequence. ACCESSION JU321769 VERSION JU321769.1 DBLINK BioProject: PRJNA77627 Sequence Read Archive: SRR358985 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Macaca mulatta (Rhesus monkey) ORGANISM Macaca mulatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. REFERENCE 1 (bases 1 to 4069) AUTHORS Zimin,A.V., Cornish,A.S., Maudhoo,M.D., Gibbs,R.M., Zhang,X., Pandey,S., Meehan,D.T., Wipfler,K., Bosinger,S.E., Johnson,Z.P., Tharp,G.K., Marcais,G., Roberts,M., Ferguson,B., Fox,H.S., Treangen,T., Salzberg,S.L., Yorke,J.A. and Norgren,R.B. Jr. TITLE A new rhesus macaque assembly and annotation for next-generation sequencing analyses JOURNAL Biol. Direct 9 (1), 20 (2014) PUBMED 25319552 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4069) AUTHORS Pandey,S., Maudhoo,M.D., Guda,C., Ferguson,B., Fox,H. and Norgren,R.B. TITLE Direct Submission JOURNAL Submitted (23-FEB-2012) Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, 985805 Nebraska Medical Center, Omaha, NE 68198-5805, USA COMMENT All reads were aligned with the human RefSeq mRNA sequences using BLAST. For read lengths of 76 bp, if the alignment length was 70 or less, the read was filtered from the input file. For read lengths of 100 bp, if the alignment length was 90 or less, the read was filtered from the input file. For paired end sequences, if one sequence was filtered, its pair was also filtered. Velveth was performed as recommended. kmer was set at 29 for single end sequences and 31 for paired end sequences. The output files from Velveth were passed to Velvetg. After performing Velvetg, this output file was passed to Oases where the final assembly was performed. Default parameters were used for Velvetg and Oases. ##Assembly-Data-START## Assembly Method :: Velvet v.1.1.05; Oases v.0.1.22 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4069 /organism="Macaca mulatta" /mol_type="mRNA" /isolation_source="001T-NHP" /db_xref="taxon:9544" /tissue_type="caudate" /geo_loc_name="China" gene <1..>4069 /gene="FAM115A" CDS 138..2903 /gene="FAM115A" /codon_start=1 /product="protein FAM115A isoform 1" /protein_id="AFE65525.1" /translation="MATPSAAFEALMNGVTSWDVPEDAVPCELLLIGEASFPVMVNDM GQVLIAASSYGRGRLVVMSHEDYLVEAQLTPFLLNAVGWLCSSPGAPIGVHPSLAPLA KILEGSGMDAKIEPEVKDSLGVYCIDAYNETMTEKLVKFMKRGGGLLIGGQAWDWANQ GDDERVLFTFPGNLVTSVAGIYFTDNKGDTSFFKVSKKMPKIPVLVSCEDDLSEDREE LLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVL FTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVY CFEPVSEVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISI TSQSLNPGPFRTPKAGIRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGAAFLQI PAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSL LVPEIEDMYSSPYLRPSESPITVEVNCTNPGTRYCWMSTGLYIPGRQIIEVSLPEAAA SADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQNSKL GSVPITVKGAVHAPYYKLGETTLEEWKRRIQENPGPWGELATDNIILTVPTANLRTLE NPEPLLRLWDEVMQAVARLGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQE LINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRSRA NIALWPPVREKRVRIYLSKGPNVKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQT NLPTDNVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENIMKLY LLTQMPH" BASE COUNT 1084 a 997 c 1083 g 905 t ORIGIN 1 ctcctagcag gttcctactg ccccgaaccc gcgctgcagg gaacagcggg gcaaacagtg 61 agtggggttc agcgtagact ctggaccagg agaggcccgc ggtgaccaag gcctgggctc 121 cggaaaccaa cagagccatg gcgactcctt ctgctgcctt cgaggccctt atgaatggcg 181 tgacaagctg ggatgtaccc gaagatgccg ttccatgtga actgcttctt attggagagg 241 cttcatttcc tgtgatggtg aacgacatgg gccaggtcct cattgctgcc tcctcctatg 301 gccgcggccg cctggtggtc atgtcccatg aggactacct ggtggaagcc caactcacgc 361 cctttctcct gaacgcagtg gggtggcttt gctcttcccc tggggctccc attggtgtac 421 acccatccct ggcacctttg gccaaaatcc tcgagggctc tggaatggat gcaaagattg 481 agccagaagt gaaagactcc ctgggggttt actgtattga tgcctacaac gaaaccatga 541 cagaaaagct ggtcaagttc atgaaacgtg gtggcggctt gctcatagga ggacaagcct 601 gggactgggc caaccagggt gatgatgaaa gggttctctt cacattccct gggaacctcg 661 tgaccagtgt ggctggcatt tactttactg acaacaaagg ggacacgagt ttctttaaag 721 tctccaagaa gatgcccaag atcccagtgt tggttagttg tgaagatgac ctctccgagg 781 acagagagga gcttctgcat gggatttcag agctggacat cagcaactcg gattgtttcc 841 catcccagct gctagtgcat ggggctttag cctttcctct agggttagat tcctaccatg 901 gctgtgttat agcggctgcc cgctatggcc ggggccgggt ggttgtgact ggccataagg 961 tattattcac tgttggtaaa ctgggcccct ttctgctcaa tgccgtccgc tggctggatg 1021 ggggccgcag aggcaagatc gtggtgcaga cagagctgag aaccctgagt ggcctcctcg 1081 cagtgggggg catagacacc agcatcgagc ccaatctgac cagtgatgca agtgtctatt 1141 gctttgaacc cgtgagcgaa gtgggggtca aagaactgca ggagtttgta gcagagggtg 1201 gcgggctgtt tgttggagcc caagcctggt ggtgggcctt caagaatccc ggagtgtccc 1261 ctttggctcg attcccagga aacctcctcc tcaacccctt tggcatcagc attacaagcc 1321 aaagcctcaa tccagggccc tttcgtactc ctaaagcagg gataaggacc tatcacttcc 1381 gctccacctt ggccgagttc caggttataa tgggcaggaa gagaggaaat gtggaaaagg 1441 gctggttggc aaagctggga ccagatggtg cagctttcct gcagattccc gccgaagaga 1501 tccctgccta catgtctgtg catcgactcc tgaggaagct gctaagtcga taccggctcc 1561 cagtagcaac ccgagagaac cctgttatca atgactgctg caggggtgct atgctttccc 1621 tggccacagg gctggcccac tccggaagtg acctctctct gttagtccca gaaattgaag 1681 atatgtacag cagcccctat ctgcgcccct cagaatctcc tatcaccgtc gaggtcaact 1741 gcaccaatcc aggcaccaga tattgctgga tgagtactgg gctctacata cctggaaggc 1801 aaattataga agtctcactg cctgaagctg ctgcctctgc cgacctgaag atacagatcg 1861 gctgccacac agatgacctg accagggcca gcaagctttt ccgaggccca ctcgtaatta 1921 accggtgctg cttggacaaa cccacaaaat cgatcacatg cctctggggt ggactcctct 1981 atataattgt gcctcagaac agcaaactgg gttctgtgcc catcaccgtg aagggggctg 2041 tgcatgctcc atactacaag ctgggggaga ccaccctgga ggagtggaag aggcgtatcc 2101 aggagaatcc agggccctgg ggagagctgg ccacggacaa catcattctg accgtgccga 2161 ccgcaaatct tcgtactctg gagaaccctg agccgctgct ccgcctctgg gacgaggtga 2221 tgcaggctgt ggcgcgactg ggagctgagc ccttccctct gcgcctgcct cagaggattg 2281 ttgccgacgt gcagatctca gtgggctgga tgcatgcagg gtaccccatc atgtgccatc 2341 tggagtcagt gcaggagctc atcaacgaga agctcatcag aaccaagggg ctgtggggcc 2401 ccgtccacga gctgggccgc aaccagcagc ggcaggagtg ggagttccca ccacacacca 2461 ccgaggccac ctgcaacctg tggtgtgtgt atgtgcatga gacggtcttg ggcattcctc 2521 gaagccgtgc caatattgct ctgtggcccc cagttcggga gaaaagagtc agaatctacc 2581 tgagcaaggg tcccaatgtg aaaaactgga atgcatggac cgcactggaa acgtatttac 2641 agctacagga agcctttggt tgggagccat tcatccgtct cttcaccgag tacaggaacc 2701 agaccaactt acccacagat aatgttgaca aaatgaatct gtgggtcaag atgttctccc 2761 accaagtgca gaagaacctg gctccgttct ttgaggcctg ggcctggccc atccagaagg 2821 aagtggctac cagcctggcc tatctgcctg aatggaagga aaatattatg aaattgtacc 2881 tcctcacaca gatgccccac tgaaattgaa gtcaagaaat gcaaaaagga attgacacat 2941 ctcagcaaag aaaactgaag ggatttggtt ataagtggag aagatctcag cacatttctg 3001 gaagaaagaa agtggatgaa acatgataat gaaagagtga agaacctttc agataaaata 3061 taagctgatc tgaacaacat aaccccaaag agacttgagc acctgaaaag tttgtctact 3121 gaagaattac tccggtcgta aaattgagcc ctctcctact cttccccaac tcttatgcac 3181 agaacacagg cagtctccac tattgatacc cgttaaaaat gtcttgttat tgttgctgtt 3241 gtttgtataa aggaattgaa cagactgcct gcagagacat aagagttggt gctccagaaa 3301 aaaatttctc ttctagtgga aataagtgcc cccagccagt agctgattct ctactgacag 3361 ctgagacctc ctactcaagt gcctgttgcc ttcaggtata gaagagattt gctgaagaaa 3421 cagacctaac cgtacaacag cagaggaaac ccatgctgac tgttatagaa cttaacagtt 3481 atgttgattc ttaaatggga atagtgagtt agaaattccc agacatgggt gatggggagg 3541 gaagaggaat aagaaaagtc accagataga attaggggcc ttgaagatat gacaaactct 3601 gagggaaaca aagacaatgt agaaagaata acttaatttt aattccatct tcagagagag 3661 ttgaggtgta tttaagatga aaaacaggat actacaaaga aacagaaaac tcaggagttc 3721 gagaccagcc taggcaagat ggcaacaccc tgtctctaca aaataatttt taaaaattag 3781 ccaagcatgg tagcatgtgc ctgtggtcct agctacttgg gaggctgaga tgggaagatc 3841 acttgagccc agaagttcag ggctacagtg aaccatgatg gtgccactgt actccagcct 3901 gggggacaga gtgagaccct gtctcttaaa aagcagcaaa agaaagagga aactgagaat 3961 aagaagatct ctttgaaaat aaaataagac tgctataagt atttggtata cggtctggaa 4021 aataaagttg agggaatctc tccagataaa gagcaaaaag agatagaaa //