LOCUS       JT413219                1530 bp    mRNA    linear   TSA 29-JAN-2014
DEFINITION  TSA: Ictalurus punctatus aby_k23:2981851 mRNA sequence.
ACCESSION   JT413219
VERSION     JT413219.1
DBLINK      BioProject: PRJNA74249
            Sequence Read Archive: SRR392743, SRR392744
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Liu,S., Zhang,Y., Zhou,Z., Waldbieser,G., Sun,F., Lu,J., Zhang,J.,
            Jiang,Y., Zhang,H., Wang,X., Rajendran,K., Khoo,L., Kucuktas,H.,
            Peatman,E. and Liu,Z.
  TITLE     Efficient assembly and annotation of the transcriptome of catfish
            by RNA-Seq analysis of a doubled haploid homozygote
  JOURNAL   BMC Genomics 13 (1), 595 (2012)
   PUBMED   23127152
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Liu,S., Zhang,Y., Zhou,Z., Waldbieser,G., Sun,F., Lu,J., Zhang,J.,
            Jiang,Y., Zhang,H., Wang,X., Rajendran,K., Kucuktas,H., Peatman,E.
            and Liu,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2012) Fisheries and Allied Aquacultures, Auburn
            University, 203 Swingle hall, Auburn University, Auburn, AL 36849,
            USA
COMMENT     First stage assembly: three sets of assemblies were generated by
            using CLC Genomics Workbench (v4.2), ABySS (v4.2) and Velvet
            (v1.1.02), respectively. Second stage of assembly: three sets of
            assemblies were combined to generate the final assembly using the
            CD-HIT-EST for redundancy removal.
            
            ##Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench(v4.2);
                                     ABySS(v1.2.6); Velvet(v1.1.02)
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /tissue_type="mixed"
     gene            1..1530
                     /gene="Yrdc"
     CDS             72..863
                     /gene="Yrdc"
                     /codon_start=1
                     /product="YrdC domain-containing protein, mitochondrial"
                     /protein_id="AHH40161.1"
                     /translation="MNVCSFARTLSLSSQLSRPFPVRIRAMCKELKTSVLLLLPPDTN
                     GPLAQSRHTAEGAQILHATLKALKEGQVIAVPTDTIYGLACLAQNSEAIKRVYDIKGR
                     NGNKPLAICVGEVQDIYKYCKVTVKEELLKDLLPGPVTLVLERSETLNADLNPFTRLV
                     GVRIPDHCFMRRLCQMCEEPLALTSANISTQSSTLAVHEFEELWPRLAIVVDGGPIAD
                     QSRLGSTVVDLSVPGRYRIIRPGCAYSATVAILEKKYALLEDSSN"
BASE COUNT          446 a          301 c          313 g          470 t
ORIGIN      
        1 aaacaaacaa acaaacaaac agtgcagtat aagtaggggg accatgctgt aatctgttga
       61 gtagtgtgtc tatgaatgtg tgctcatttg ctcgtacctt gagcttgtcc tcacagctct
      121 ctcgtccttt cccagtgaga atcagagcaa tgtgtaaaga gctgaagacc tcagtgctgc
      181 tgttattgcc gcccgacacg aatgggccgc tggcgcagag cagacacaca gcagaaggag
      241 cacaaatcct ccacgccaca ctaaaggctc tgaaagaagg ccaggtcatt gctgttccca
      301 ctgacacgat ctatggcctg gcttgcttgg ctcagaattc agaagctatc aagagggtgt
      361 atgatatcaa gggcagaaat ggcaacaagc ctttagccat ttgtgttgga gaagtacaag
      421 atatatacaa gtattgtaaa gtaactgtta aagaagagct tctgaaagat ctccttcctg
      481 gaccggtcac tctggttctt gaaaggtctg aaacactgaa tgcggacctc aatccattca
      541 ctaggcttgt aggtgtccgc atcccagacc actgcttcat gagacgcttg tgtcagatgt
      601 gtgaagagcc gcttgctcta acaagtgcta atatcagtac acagtcaagc actcttgcag
      661 ttcatgagtt tgaggagctg tggccaagat tagccattgt agtggatggt ggcccaatag
      721 cagatcaaag tcgactgggc tcgacagttg tggacctctc agtgcctggc agatatcgca
      781 ttataagacc tggctgtgcc tattcagcca cagttgctat acttgagaag aaatatgcgt
      841 tattggagga ttcttccaat taatgaatgt tttgctctca tctgttatcc cgctaaagcg
      901 cacaaccata aactgtttga catccacctg gattctaaat tatttgactg agaagccaat
      961 acaaaataac tacggatgtg tctggaaatt agagtagact catccatgtg aatatttgtc
     1021 ttcatctttg tattgtctga ctttagggtt ttcataaaag tcagtttttc ataccacttt
     1081 tactaaataa tcgaccttgg catcatagcg cagactttac tccggtgatc agcgttagtg
     1141 aaataccgtg gttattgttc tggttctcaa aacatttgtt agcttggaat attgagatta
     1201 ttctctcaga catcaaatat aggtcattga acactcagtt gaagacttca aagtgctttg
     1261 aaatgtttta cttataatgt ttatttaatt tttgacttat ttgaaccttt tatttattgt
     1321 tattttcaat agttacacag atttatatct tcaagatacc attgcaagtt tattgtagcc
     1381 gaagttgcat tgaggaccaa agatgattca ataatactgt gcataatatt gaaaattacc
     1441 tctgtttcac tcagaacaat acaaataaaa aaaagaatac aaattaaatc atattttgtt
     1501 cagatttact gtgtagattt tttttttttt
//