LOCUS       JQ937968                 768 bp    DNA     linear   VRT 26-AUG-2013
DEFINITION  Carangoides ferdau voucher KU6972 rhodopsin (RH) gene, partial cds.
ACCESSION   JQ937968
VERSION     JQ937968.1
KEYWORDS    .
SOURCE      Ferdauia ferdau (blue trevally)
  ORGANISM  Ferdauia ferdau
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Carangiformes; Carangidae; Ferdauia.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Betancur-R,R., Li,C., Munroe,T.A., Ballesteros,J.A. and Orti,G.
  TITLE     Addressing gene tree discordance and non-stationarity to resolve a
            multi-locus phylogeny of the flatfishes (teleostei:
            pleuronectiformes)
  JOURNAL   Syst. Biol. 62 (5), 763-785 (2013)
   PUBMED   23749787
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Betancur,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2012) Biological Sciences, The George Washington
            University, 2023 G St NW, Washington, DC 20052, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: CodonCode Aligner v. 3.7
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Ferdauia ferdau"
                     /mol_type="genomic DNA"
                     /specimen_voucher="KU6972"
                     /db_xref="taxon:3040454"
     gene            <1..>768
                     /gene="RH"
     mRNA            <1..>768
                     /gene="RH"
                     /product="rhodopsin"
     CDS             <1..>768
                     /gene="RH"
                     /codon_start=1
                     /product="rhodopsin"
                     /protein_id="AGD95752.1"
                     /translation="GAYMFLLILLGFPINFLTLYVTIEHKKLRTPLNYILLNLAVANL
                     FMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEIALWSLVVLAIERWMVVCKP
                     ISNFRFGENHAIMGLGLTWFMASACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNN
                     ESFVVYMFTCHFCIPLTVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVIIMV
                     IAFLVCWCPYAGVAWWIFTHQGSEFGPVFMTIPAFLPR"
BASE COUNT          135 a          221 c          189 g          223 t
ORIGIN      
        1 ggtgcctaca tgttcctgct catccttctc ggctttccca tcaacttcct cactctctac
       61 gttaccatcg aacacaagaa gctgcgaacc cctttgaact acatcctgct gaacctcgcg
      121 gtggctaacc tcttcatggt gtttggagga ttcaccacaa cgatgtacac ctctatgcat
      181 ggctacttcg tccttggtcg tcttggctgc aatctggaag gattctttgc taccctcggt
      241 ggtgagattg ccctctggtc actggttgtt ctggctattg agaggtggat ggtcgtctgc
      301 aagcccatca gcaacttccg cttcggagag aatcacgcta tcatgggctt gggcctgacc
      361 tggttcatgg cctcagcttg tgccgtcccc cctcttgttg gctggtctcg ttacatccct
      421 gaaggcatgc agtgctcatg tggagttgac tactacacac gtgcagaggg tttcaacaac
      481 gagtccttcg ttgtctacat gttcacctgc cacttctgca ttcctctgac tgttgtgttc
      541 ttctgctacg gccgtctgct ctgtgctgtc aaggaggctg ctgctgccca gcaggagtct
      601 gagaccaccc agagggctga gagggaagtc acccgcatgg tcattatcat ggtcatcgct
      661 ttcctggtat gttggtgccc atatgctggt gttgcctggt ggattttcac acatcaaggc
      721 tctgagttcg gaccagtctt catgaccatc cccgccttct tgccaaga
//