LOCUS       JQ711501                 984 bp    RNA     linear   VRL 12-JUN-2012
DEFINITION  HIV-1 from Netherlands pol protein (pol) gene, partial cds.
ACCESSION   JQ711501
VERSION     JQ711501.1
KEYWORDS    .
SOURCE      Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1
            Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
            Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Pingen,M., Nouwen,J.L., Dinant,S., Albert,J., Mild,M., Brodin,J.,
            Simen,B.B., Walsh,S., Kayser,M., van der Ende,M.E., Schutten,M. and
            Boucher,C.A.B.
  TITLE     Therapy failure resulting from superinfection by a drug resistant
            HIV variant
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 984)
  AUTHORS   Pingen,M., Nouwen,J.L., Dinant,S., Albert,J., Mild,M., Brodin,J.,
            Simen,B.B., Walsh,S., Kayser,M., van der Ende,M.E., Schutten,M. and
            Boucher,C.A.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2012) Department of Virology, Erasmus MC,
            Rotterdam, Gravendijkwal 230, Rotterdam, The Netherlands
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Human immunodeficiency virus 1"
                     /mol_type="genomic RNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:11676"
                     /geo_loc_name="Netherlands: Rotterdam"
                     /collection_date="23-Jul-2008"
                     /note="superinfection - 39 months post diagnosis;
                     subtype: B"
     gene            <1..>984
                     /gene="pol"
     CDS             <1..>984
                     /gene="pol"
                     /codon_start=1
                     /product="pol protein"
                     /protein_id="AFL70021.1"
                     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGXWKP
                     KMIGGIGGFIKVRQYDQITIDICGHKAVGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
                     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICSEMEKEGKISKIGPENPYNTPIF
                     AIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQNKSVTVLDVGDAYFSVP
                     LHEDFRKYTAFTIPSINNEAPGJRYQYNVLPQGWKGSPAIFQSSMTRILDPFRKQNPE
                     LVIYQYVDDLLVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLW"
     mat_peptide     1..297
                     /gene="pol"
                     /product="protease"
     mat_peptide     298..>984
                     /gene="pol"
                     /product="reverse transcriptase"
BASE COUNT          372 a          160 c          206 g          236 t
ORIGIN      
        1 cctcaaatca ctctttggca acgaccmcty gtyacaataa agataggggg gcaactaaag
       61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttrccagga
      121 aratggaarc caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
      181 cagataacca tagatatctg tggacataaa gctgtaggta cagtattaat aggacccaca
      241 cctgtcaaca taattggaag aaatctgttg actcaaattg gttgcacttt aaattttccc
      301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
      361 aaacartggc cattgacaga agaaaaaata aaagcattag twgaaatttg ttcagaaatg
      421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
      481 gccataaaga aaaaagatgg tactaaatgg agaaaattgg tagatttcag agaacttaat
      541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
      601 cagaayaaat cagtaacagt tctggatgtg ggtgatgcat acttttcagt gcccttacat
      661 gaagacttta gaaagtatac tgcatttacc atacctagta taaacaatga ggcaccaggg
      721 mttaggtacc agtacaatgt gcttccacag ggatggaaag ggtcaccagc aatattccaa
      781 agtagcatga caagaatctt agaccctttt agaaaacaaa atccagagtt agttatttat
      841 cagtacgtgg atgatttgct tgtagggtct gacttagaaa tagggcagca tagaacaaaa
      901 atagaggaac taagacaaca tctgttgaag tggggattta ccacaccaga caagaaacac
      961 cagaaagaac ctccatttct gtgg
//