LOCUS       JO316361                 901 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c55614_c mRNA sequence.
ACCESSION   JO316361
VERSION     JO316361.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          202 a          190 c          274 g          229 t
ORIGIN      
        1 cgtatggcgt gcccttgtca gtggcagcag cttctccgtc caagtgcagg cgattgcaca
       61 ggtgcagtgt ctgaaacgca gggwmytcgg mmgggwggag gattgggaag atggcgtgaa
      121 ggaggcggct cgatggcgcg gcaggtgtat gttggcaatc ggtggcgatg gcgggggatg
      181 accatctgct gtctttctga tgtgcagaga gtgaacagaa gctgtggcag agggtctttg
      241 gccgtggggt actcgccggg ttgtgtacat gggctgattg taataagtcg gaccgccaga
      301 agctctcggg gtgctctgga gatggcggct caatgttggc gacgtcagct ccacgagaga
      361 gagaggtgtg caccgcgcat ggcgcctgaa gaagagaaga tgacgaagcg ttcccctctc
      421 gatttcccag ccgagtggga gaggccaggg cccgggcgaa ggcctgacat ttttccacaa
      481 ttcactccaa tgaaaccacc cttgccgcag ccattgcctg gggatccccc agagaaagaa
      541 gatgatgagg aggaggaggg cgacgatgac ccggaaccag aagaagaacc tgaaccagaa
      601 gagtaattgg aaggaaggcg cattgctgtt ttcttcaatc atcttttcca agctttttgt
      661 tcattggatt ctttggagac aaacctgtgt gatcaatttt catatcgaaa taactttttt
      721 cttacctcat ttgcgtcaag agtgttgatg tgcatcgact ttatctattg ttagtgcgtg
      781 cttctgtgat gaatgttatg tcactgtgat ccagggcctc tctttttgtt tgatgaaaac
      841 cgtcaaacct tttgattctt tgcaaatatc agatttctca aaaggcgggg agttgtttct
      901 a
//