LOCUS       JO310684                 378 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c43236_c mRNA sequence.
ACCESSION   JO310684
VERSION     JO310684.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT           85 a           78 c           98 g          115 t
ORIGIN      
        1 gtttcttctt cttcttcttc atcatcttca tcatcatcat yatcgtttgg ccgtaatact
       61 aagtggcaga gatggatgat gacgcagttc attatttgga aagcttggaa atcttgtcga
      121 atgaaacgga acggaacgga acggttgaga taatcttaag tggcagtgat ggatgacaca
      181 gcccgtcgat ggtttgtaag aaggcgcgat ctgtaattgt cactacgacg agctttgggc
      241 gaggttccac ttccctgttt gcatcaattg cggccgtaga tactgcgcat ctacggctga
      301 gattgctgct tacagtgttt ggaacctcgs cctttgtgtc gcacacagat gatgttgtga
      361 atgcttgtgc gctgtccg
//