LOCUS       JO302684                 479 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c30454_c mRNA sequence.
ACCESSION   JO302684
VERSION     JO302684.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          134 a           94 c           62 g          189 t
ORIGIN      
        1 actaatatcc attgatgtta cgaatgtttt cttgatatca tctggtaatc cagatagctt
       61 ctgaagactt ccttcgtgaa ttattttctt cattaaatct tcactgtaca aatttctttt
      121 ttcgagagat ttacgaagat gtttatttac ataagtgagt tcttgacctc ccaaaattcc
      181 tttataaaaa taagatagtg caaaataagg ttcaactcct ccactaacat caaacatcat
      241 tgcaatactt ccagttggag gaacatttgt aattgcagca tttcttcttg gaattccttc
      301 tttagcaaat ttgcttaatt tccaattggg aaagtttcct ttttcttttg caagttgttc
      361 tgaatagttt tctccaactt tctgaattgt tcccattact tgacgagcta tttgtcttcc
      421 ttgttcacta ttgtatccta ttccaagttc aaataacata tctgcaaatc ccatgattc
//