LOCUS JO302684 479 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c30454_c mRNA sequence. ACCESSION JO302684 VERSION JO302684.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 479) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 479) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..479 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 134 a 94 c 62 g 189 t ORIGIN 1 actaatatcc attgatgtta cgaatgtttt cttgatatca tctggtaatc cagatagctt 61 ctgaagactt ccttcgtgaa ttattttctt cattaaatct tcactgtaca aatttctttt 121 ttcgagagat ttacgaagat gtttatttac ataagtgagt tcttgacctc ccaaaattcc 181 tttataaaaa taagatagtg caaaataagg ttcaactcct ccactaacat caaacatcat 241 tgcaatactt ccagttggag gaacatttgt aattgcagca tttcttcttg gaattccttc 301 tttagcaaat ttgcttaatt tccaattggg aaagtttcct ttttcttttg caagttgttc 361 tgaatagttt tctccaactt tctgaattgt tcccattact tgacgagcta tttgtcttcc 421 ttgttcacta ttgtatccta ttccaagttc aaataacata tctgcaaatc ccatgattc //