LOCUS       JO302197                 898 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c29570_c mRNA sequence.
ACCESSION   JO302197
VERSION     JO302197.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          207 a          183 c          254 g          253 t
ORIGIN      
        1 ttggtacgaa aagatacgac gcccattctg gtggtgagag agaaattcag aggactatgc
       61 tggagcttct aaaccagctg gatggttttg atgcacgtgg tgatgtgaag gtgattttag
      121 caacaaatcg aatcgacagc ttagacccgg cacttctgag acctggtcgt aattcccggg
      181 attgagttcc ccttgcccga cataaagacg aagaggcgca tctttcagat ccatactggt
      241 cgaatgactc tttcagacga tgtaagcctg gaggagtttg tgatgacgaa agatgagttg
      301 tctggggctg atatcaaggc catttgtact gaagcgggtc ttcttgcact acgagaacgg
      361 agaatgaagg taactcaggt ggatttcaag aaagccaagg agaaggttct ttacaagaag
      421 aaggaagggg tgccggaggg gctctatatg taaatttgtt ggtagcggta tatagcttat
      481 gttgtgcaaa tatactgagg attgaatgga ttcttttcct ttctttggtg gagatctcct
      541 ttgctttttg agtttgattg tagcaagaag agcactagaa tgtgcatgct cacgccatcg
      601 ccttttccat ggcttccaat ccaagcgcgg ctcgtctctg ctgcgctttg cggtgttcct
      661 gtcctgtttg ggtccctgca ggagtcaggc ctcggtcctc acctttgcct gcaatccctc
      721 cccgtcagcc actgccagtc catctctcta ttcgtttggt gccgtgctcc ttgggttttt
      781 catccttttc gggwagtgag ggcggatgaa aagaggagtg gggtaggtgg gaaatgaggt
      841 agatgaagtt tacagcctgg ttttgacatg tggcactgca gtgcgaaaat gctagact
//