LOCUS       JO302002                 541 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c29252_c mRNA sequence.
ACCESSION   JO302002
VERSION     JO302002.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT           92 a          103 c          171 g          175 t
ORIGIN      
        1 gtcattctcc ttttcaccaa gcggtgtgcc gctgggggtg ctttaagctc tgaaggtggg
       61 gaggaaagtg gccggagctg gtaactggtg gtggaattcg aaaggggaca tgggttcttt
      121 ctttagtgat cgggcgcgcc tccctctcct taaaatcctt tgtgaccctt tgtgtattca
      181 tggagcccct gttggggggt tgccgtgaca gttgagggtt gtttattaca aatctgtgag
      241 ccccttatta gggtgctcac ggtctcttat gcaccctttt ggtcgttgtc ctctaccgct
      301 ggacgagtgt atgatcttct tcggtgggtg gaggacttct ggcggataag ggttgtcctg
      361 ttttggtaat tgatgacgaa gtggaggtat gtttgctgtt gtcggatgga ggtcgacgcg
      421 ggagccgttt ttgggttttg cgccgaagct ggagtgttga tattggaaga ctgaggacta
      481 tgatgatcgt ttcacatact gtgctgcttc gtaattgcca aattgggatg tctttcatct
      541 a
//