LOCUS       JO290363                1022 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c13077_c mRNA sequence.
ACCESSION   JO290363
VERSION     JO290363.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          272 a          236 c          212 g          301 t
ORIGIN      
        1 tgtgaggatt tagggcttgg cactcactag tttcaatcac ctgctggtca aaggactggt
       61 cgtccatgac gactggctcg gtagctgctg gtccatgcat cttgctgcat tgcaagcaag
      121 gctgtttgtg agggtaagaa gcttcttcct tgctgaggag cagacgttct acagtcttca
      181 atccaccatc tttcgggagg tcaagaaaga acaaacaaag gtaagcaacg gcctcatagc
      241 agttgatagc aattcacaga gattcatatc atttcgtagc atttgcagca attcctgtca
      301 actcattgca tcggttgacc tggcagcaag aatggattgc gcccttaccc ttatggcgca
      361 ccattgccct ttgttatttt tttaaaaaca attctgctca aaaacactgg tccagagtct
      421 cgagacaagc aagcttcatg cttctccttc tcctacttct ccctccatga gagacttkaa
      481 atgtgttttt tctggtttgt gcatgcatcc tgttcagtgt caagcttggt ccttccattt
      541 ttcttgacat aacacttttc gctgacaggc tcaccggttt tctgaaaagc aaaatcaacg
      601 ctttatcact accaacgaac tggaatgagt cacagagtga aaacttgtta ttgaactgaa
      661 cctagcctga attgcccgag ctgaacatgc aagctcccac gtgtgaaggt ctccaatctg
      721 ctcattttga aagaggggaa actttttgaa tatcatgaat agaatgccgg gtgttatatt
      781 tgaaaacacc tatgtttttc attatacaat gcagccacgg aaggcagtac ttggagccac
      841 aaaaagggtt attagcagta tgtgacatgt gaataaatta gctgaacgtg tgacgggttt
      901 caatccgaca tgagtctgca atccgacatc cctagccaaa cccctctgtt ttgtcaatcc
      961 tcccatcctt tgaacttccg agaattagac agttgctatc tgaaaaactt ttttaggttt
     1021 ac
//