LOCUS       JO288929                 529 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c11133_c mRNA sequence.
ACCESSION   JO288929
VERSION     JO288929.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          170 a          102 c          118 g          139 t
ORIGIN      
        1 aagaaaaaaa tcttccaacc tttctatcag tctggaactt cgaagttgca tggaacaggt
       61 cttggactgg tgatttcaag agagctggtt ctattaatgg gagggcagat cggcttcgaa
      121 agtatcgaag gaagaggatc cactttctgg tttacaacga aattggaaaa agtcaagttt
      181 ccagagacta caaatgatcc aagttacaaa gttcaagcga tcgtgtgtca attagctccc
      241 aaagtctcag aagtgttcag aagcgttttt ttgaaacttg gaattccgtt catctctgca
      301 cagaatcttc aaactgcctg caaactcgga aaaggaatga tatcgttgga caagaatact
      361 cttgttgtca cggatgaaga ctttggactc tccgaaatga gaaaccaaga aggacttgat
      421 catatcaagg tgctcgttgt gaataatgtc cgaaatatcc cggactgtcc ggaaggaagc
      481 ttacactaca tggacaaaac ctctactgtt tgaaccgaat acgaaatgt
//