LOCUS       JO288376                1038 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c10378_c mRNA sequence.
ACCESSION   JO288376
VERSION     JO288376.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          379 a          151 c          152 g          356 t
ORIGIN      
        1 aaggtgtaca aggtagcata tctactgatg tttaattatt tattggaatt tgcaaaagat
       61 acacctggtt tgaacgaatt aaatatcact gatttcacac gaattatgaa tcatcgagta
      121 ttcgattttt tggctaatca ttcattatcc attattctat aaaaatgaat cttatgttat
      181 gaccgtaaat ggtttacaat attctcgaaa atttatgaat caaatcattg gaaaaaagac
      241 tacagatgct cttcatgaat tctccgaacg acttcatgaa ttaaaaatta ctcaagtcga
      301 acatagtcta atcattccaa ttattctttg tctaccggat gaaaaattaa ttgattcgga
      361 gagtgtacat actgtgaagt attgttatat gtacgcgctt tatattcaat tgtctacaac
      421 acgaactgaa gacgaagcga aaactgtatt tgatcatatt cttcaaattg tcaattcgat
      481 gaatgatatc aatcaattgt gtaacaaaaa tattggtgaa attcgactta gcacagcgac
      541 aactcgtgaa tgatatttta tttcttttct gttaattaat tggaacaatc aaacaaataa
      601 tatttattta ttcttcctaa tattttcatc aattacaaga tgatatttct ttgatttgga
      661 tactaatata cagagagatc agagaaagat tttacattca cggaatacaa aaaaagaagg
      721 aataaatacg aaaataatat tcattggact ggataaatta attaacagaa aagaaataaa
      781 atatcattca cgagttgtcg ctgtgctaag tcgaatttca ccaatatttt tgttacacaa
      841 ttgattgata tcattcatcg aattgacaat ttgaagaata tgatcaaata cagtttttcg
      901 cttcgtcttc agttcgtgtt gtagacaatt gaatataaag cgcgtacata taacaatact
      961 tcacagtatg tacactctcc gaatcaatta atttttcatc cggtagacaa agaataattg
     1021 gaatgattag actatgtt
//