LOCUS JO238622 798 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c11553_c_s mRNA sequence. ACCESSION JO238622 VERSION JO238622.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 798) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 798) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..798 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 214 a 188 c 222 g 170 t ORIGIN 1 tcccactgct ggtatcctgg ctgtcagtct cgcatgaatc tgtagctggc acgggtagtt 61 ttctgctctt gtatattggc ttgaagtccg tgctggtaag ctggaaacaa tggctacacc 121 agcagctgag acaaatggca aagggttgaa ctcactcact gggctggaga acagtctcag 181 agagactctt aaaaaggagg cgcaagatgc agagaagagg cagaaggcgg ttgagattca 241 gaagcaagca tgggaccaga ccaggcaggt catgtctgtc ccaaaggagt tggagattgg 301 ggcagacagt cgaaaggaag atcaggccaa tgcggtggtg cmgrsagtgg cggccaaaga 361 ggaggtgatt aataggaaga agcaagagat gcagggcaag gtccatgccc accttacgcg 421 catcaaccag gaggcaaagc gactggacga ccttggcaag gaaatcgctg cattggggga 481 ccccacaaag agagagagag agagaatcca agtccgacga tgcatgcggt gtttgtcgag 541 cttgagcatg tatgcatttg ctcttcaccc ttaaattgtg ttccactctc ataatggttg 601 gcgaaaactt cggaaatccc tgcattccac gggagccacg tgtacttaca agtcccccgc 661 actacctkca gtccaagcag atttaatgat ctggttgacc agaagcggca agaagcagca 721 agtttcccac ttgccagttt ctgtacccgg tggtatacac catttcaaaa aggcgctctc 781 tctctctctc tctctctc //