LOCUS       JO232049                1157 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c52472_c mRNA sequence.
ACCESSION   JO232049
VERSION     JO232049.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 1157)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          276 a          363 c          269 g          248 t
ORIGIN      
        1 aacgatgcac caggacctgt accggccttc ctctcgaacc tccgcaagct cacctacctg
       61 gatctactgt tcaacttatt tgtaaggccg gcttgcctat actcggctat tggccgtctc
      121 acagaattcg aaaaacgttt aaaaaaccta aaaaccgaaa acaaaataac tacaaaagtc
      181 ccgcgaagga atcttcggca cagtgcccaa gagctactct gcactgaaga agctccgaca
      241 cctgcagctc aacgacaaca ccctgagtgg tggcatcccc agtttcatcg gaaacttttt
      301 ggacctcacc tacttgaggt tgagcaacaa caactggggc agcggcatcc ctaacagctt
      361 cagcaacctc accaaactcg tcttccttgg actacgctat gcaactctgg agggttcaat
      421 cccaagtggc ctcggacgcc tccgccagct cacctacttg tctctgaacg agaatggtct
      481 tcagggcact gttccaaagc ccatctttca gctccccaaa ctgcgaaccc tgttattgga
      541 gaacaacttt ctgagcggga cgcttcccac caacattgga aatctccaga agctcgacca
      601 attcacactg tccaacaatc tcttcacggg acgcattccg cgcatcgtgc cccgccgcat
      661 cggctccctc gacttctccg gtaactactt ctatggcgag cccatcgtct tccgctccaa
      721 cggcaaacgc gtgtgcgacg agtgcgtcga cggcgcgtgc acattttccc tctccacggg
      781 agggaactgc ctgacctacc ccaaaaactt ttcctcctgc gcttctgttg agcagcagcg
      841 gccgagggca cagtgcaccg cattctgcgg gacgggcacg ccgcggcagc agtgcagcgg
      901 caagggtgtg tgcgtgccca aggggatcaa gcccggtgtg ggacccacag gcttcaagtg
      961 cacgcctcct tcaccatgaa agcctccctg tagtatgaca gccgctgctc gtctcggagc
     1021 tgggctgctt caccgacctt gggcgtggga ggagactgct cttgttgtat tgtatcggcc
     1081 gtagcacctt gtggatcaat aaaagctttg acaccataac caaaagccct ggangtcctt
     1141 tttgtagaaa aaaaaaa
//