LOCUS       JO230873                1050 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c42863_c mRNA sequence.
ACCESSION   JO230873
VERSION     JO230873.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          241 a          308 c          249 g          252 t
ORIGIN      
        1 ccaccctcac cgccatcaac accgtattca agggaaacac tgcgaccaac ggccgcggcg
       61 gcgccatcgt gttcactggc aactggggcg tcggcgcgta caagttctgc ggctcaactt
      121 tccacagcaa catcgcaagc ccgagccgct acagctcctc caacaacatc ctcttcctca
      181 ccggcaccaa ccgtgcttct gtgggcttct gccctggacc tgctcctgga ggcattcagg
      241 caccaaagat cattaagttt gtccgaaact gcactggctg ttctggatgt gacggcgact
      301 gctacggccg tggcaagtgc atgctggacc agctctacgc atatccatcg tgccgctgca
      361 actcgttcta cacgaacgag tcgtcatgca ccgaatgcca gcagggctac accagcaagt
      421 cgcagtgtag acagtgctcc aacgcatact accaccccaa ttcaaagcct gtcacatgtg
      481 cattgtgccc gggattttcc caggttctgg gatataccta catggtcaac tccatcaaca
      541 acgtgacagt agcaaccggc ccgcttcagt gtcaacggtt ttgcaacgcg acgcaacagt
      601 ccttcaacgg taccgagaac ccgtacagtt attgcaacat gtggatctac acggctccaa
      661 gggcaggagc tccagcagcg tgtgcaggca agtgcttcat gctgtcgcag tcggagagtt
      721 gtggagtgaa ccccgtcaag aagattgcgt cttacggcat cacataccag tatcttgaac
      781 ccgactacga ctactgcgat gattgacaac atcatgtcca cccattcatc tgtccctgta
      841 caagcatgag ctttgaggct agtatggatt ccctatctca cgttgcaact tcaatatata
      901 gttggagttc ctggttttct tgcaaacgag tggatctaga gcacatttgg tgggtatgct
      961 ggaaacttga gtcctgttta tttcttgttt tcttgagttt gccatcagta ttgcggtgcc
     1021 tcggtacatt cgactgacaa gctactttcc
//