LOCUS       JO229172                 836 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c34506_c mRNA sequence.
ACCESSION   JO229172
VERSION     JO229172.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          174 a          205 c          300 g          156 t
ORIGIN      
        1 gctgcgtgga ctgcgtcggc ggagtgggcg gtgtgggttg ggggcggaag ccacgcttgc
       61 cgccccagtg tcaccaaggg gtgtagttgg acaccaaggg gtgctgctac acacgtcagt
      121 gctggttcag ctcccgcagg catggtctgc tcgttggctc gggaggccgg ggtgtgagga
      181 gaaggatttt gctgactgca gcggcagcaa cctctgggct gtctcgaccc aagcaaaggc
      241 ggtgtggcgg cggcagcagc agcagagact gcctgcatcc taggcagtgg gaccgggaac
      301 ctcgttctct ggtgcgtgat tggagaggcg agcggaggca aagggcaggt ttggcggaag
      361 cagcagcatc agcagctgag tgagtgacat ggtcgggtgc aaatgacgtg ggaacatwtt
      421 tgagaaggtg tcccacgttg cgtcagatgc ctcagcacag tcaagcagcc ctacgggaga
      481 agtagcaaca gcagcaggag cagcatcaga agcagcagca gctggttgag tagcatcgcg
      541 tggaggagaa gaaggaagag gccaagaagg aggaggagaa ggaggagagc gatgacgact
      601 tgggtttcag cctgtttgac taagccacat cctgtccacg cgtctccagc cgcccatgaa
      661 agggtcagca gcagcggtct ctgcttctgc ttctgcttct gctgccacac tgccttggcc
      721 attcacccgc atcgtctgct tgtgtgtatg gcgacgatga gtggagcttg tacgagattg
      781 gtgcaggagc acccagtcgg gcagccgcca ggagtgcatg tgttgtctgc acacag
//