LOCUS JO229172 836 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c34506_c mRNA sequence. ACCESSION JO229172 VERSION JO229172.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 836) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 836) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..836 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 174 a 205 c 300 g 156 t ORIGIN 1 gctgcgtgga ctgcgtcggc ggagtgggcg gtgtgggttg ggggcggaag ccacgcttgc 61 cgccccagtg tcaccaaggg gtgtagttgg acaccaaggg gtgctgctac acacgtcagt 121 gctggttcag ctcccgcagg catggtctgc tcgttggctc gggaggccgg ggtgtgagga 181 gaaggatttt gctgactgca gcggcagcaa cctctgggct gtctcgaccc aagcaaaggc 241 ggtgtggcgg cggcagcagc agcagagact gcctgcatcc taggcagtgg gaccgggaac 301 ctcgttctct ggtgcgtgat tggagaggcg agcggaggca aagggcaggt ttggcggaag 361 cagcagcatc agcagctgag tgagtgacat ggtcgggtgc aaatgacgtg ggaacatwtt 421 tgagaaggtg tcccacgttg cgtcagatgc ctcagcacag tcaagcagcc ctacgggaga 481 agtagcaaca gcagcaggag cagcatcaga agcagcagca gctggttgag tagcatcgcg 541 tggaggagaa gaaggaagag gccaagaagg aggaggagaa ggaggagagc gatgacgact 601 tgggtttcag cctgtttgac taagccacat cctgtccacg cgtctccagc cgcccatgaa 661 agggtcagca gcagcggtct ctgcttctgc ttctgcttct gctgccacac tgccttggcc 721 attcacccgc atcgtctgct tgtgtgtatg gcgacgatga gtggagcttg tacgagattg 781 gtgcaggagc acccagtcgg gcagccgcca ggagtgcatg tgttgtctgc acacag //