LOCUS       JO227039                 603 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c29446_c mRNA sequence.
ACCESSION   JO227039
VERSION     JO227039.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          136 a          187 c          135 g          144 t
ORIGIN      
        1 agcatctaga aaccactccc attgcaaagg gaaggaaacc ttggttctct gtcttttctc
       61 tccttctttc tcaatgtcgg cccatggccc atggctcatg gcccacccat gatagcatgg
      121 cagcamgatg caattcatgg ttgtgccatg tggcacctga tcctaccttg tcagggacgt
      181 gaagagcatg gacttcaaac ttctacgctg aactcgttga tcagtgccct cacttcttgg
      241 ttgttgccag aaagacaggc ggctgtcaag acgagcttgg gcatgcagca atgttcgtag
      301 tttccgaagc aacacaacaa tgcatacggc aatcacgagg caggtcacca tccttctcct
      361 ccgtcagctc ttgggcgtag gtcaagggtg tgctgttcac agccgaatag gagacagagc
      421 cccgccctcc acatcctctc agtagccaat cctgtagcct ccaaccttcc cgcctcggcc
      481 tcagcctccc aaatgacatc acccttgccc ttgcccagtt gccaatgcgg ttgttgacca
      541 taaacttgct ctctcggaag ctgcgcaatg gccaatcgcc cctcgttcaa cctcatgaag
      601 aaa
//