LOCUS JO201000 693 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Chlorokybus atmophyticus strain UTEX 2591 chatm_c10850_c_s mRNA sequence. ACCESSION JO201000 VERSION JO201000.1 DBLINK BioProject: PRJNA51157 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Chlorokybus atmophyticus ORGANISM Chlorokybus atmophyticus Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus. REFERENCE 1 (bases 1 to 693) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 693) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..693 /organism="Chlorokybus atmophyticus" /mol_type="mRNA" /strain="UTEX 2591" /culture_collection="UTEX:2591" /db_xref="taxon:3144" BASE COUNT 138 a 178 c 239 g 133 t ORIGIN 1 tgagagagag actgcgagac ggaakkcsmr ggagagctgt atgggccgga gtggtgccga 61 ctgtcgctgc agagaaccgc cgcggctggc acattgggtg cggctgcggg ggcgttcatg 121 gcgctgtcca gcgcgcgctc ggttcccggc tatgctgctg ctgtgggggc caactgcgcc 181 atcatcgccg gctcctactg cgttgctcat gaagcgttgc atgtcgtgag acccgccgct 241 gatgtgacca gaaccgcgct ggccggagcc agcacgggcc tcctgatagg cgccttgcat 301 ggtgggaagt ggagggcaat aagtgcggcg ttggcgcttg catgcgcagg ttcggccacg 361 cacgcaacgg tggatgctgt caactcctgg cgtctgaggc gtatactggt tgcatcagag 421 aatgagcaca gtaacactct cactgatgcg ggtgaaggtc aaccccaaca tgttggacaa 481 cttcaccctc ccgtcgtggt tcccgatccg gcggctgagc gaggaggagg tcgaacagcg 541 cgcggccgag gagctggtgt tgaaagagct tgcaatgcgc aggaagatgc agcaaaggat 601 tgatgaggcc gaaaggacta aaagcaactg atgtaactat attgttgtgt gctgcaatgc 661 aagtgggcca ctgcactggc atggcattgt tgc //