LOCUS JN192437 5141 bp DNA circular VRL 26-JUN-2012 DEFINITION BK polyomavirus isolate SJH-LG-306, complete genome. ACCESSION JN192437 VERSION JN192437.1 KEYWORDS . SOURCE Betapolyomavirus hominis ORGANISM Betapolyomavirus hominis Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus. REFERENCE 1 (bases 1 to 5141) AUTHORS Drew,R.J., Walsh,A., Laoi,B.N. and Crowley,B. TITLE Phylogenetic analysis of the complete genome of 11 BKV isolates obtained from allogenic stem cell transplant recipients in Ireland JOURNAL J. Med. Virol. 84 (7), 1037-1048 (2012) PUBMED 22585720 REFERENCE 2 (bases 1 to 5141) AUTHORS Drew,R.J., Walsh,A., Ni Laoi,B. and Crowley,B. TITLE Direct Submission JOURNAL Submitted (29-JUN-2011) Department of Microbiology, Sir Patrick Dun Translational Research Laboratory, Trinity College Dublin, St James's Hospital, Dublin D8, Ireland FEATURES Location/Qualifiers source 1..5141 /organism="Betapolyomavirus hominis" /mol_type="genomic DNA" /isolate="SJH-LG-306" /isolation_source="urine from HSCT recipient with BKV-haemorrhagic cystitis:born in Ireland" /host="Homo sapiens" /db_xref="taxon:1891762" /geo_loc_name="Ireland" /note="genotype: Ib-1" CDS 376..576 /codon_start=1 /product="agnoprotein" /protein_id="AEO89596.1" /translation="MVLRQLSRQASVKVSKTWTGTKKRAQRIFIFILELLLEFCRGED SVDGKNKSTTALPAVKDSVKDS" CDS 612..1667 /codon_start=1 /product="VP2" /protein_id="AEO89597.1" /translation="MGAALALLGDLVASVSEAAAATGFSVAEIAAGEAAAAIEVQIAS LATVEGITSTSEAIAAIGLTPQTYAVIAGAPGAIAGFAALIQTVTGISSLAQVGYRFF SDWDHKVSTVGLYQQSGMALELFNPDEYYDILFPGVNTFVNNIQYLDPRHWGPSLFAT ISQALWHVIRDDIPAITSQELQRRTERFFRDSLARFLEETTWTIVNAPINFYNYIQEY YSDLSPIRPSMVRQVAEREGTRVHFGHTYSIDDADSIEEVTQRMDLRNQQTVHSGEFI EKTIAPGGANQRTAPQWMLPLLLGLYGTVTPALEAYEDGPNQKKRRVSRGSSQKAKGT RASAKTTNKRRSRSSRS" CDS 969..1667 /codon_start=1 /product="VP3" /protein_id="AEO89601.1" /translation="MALELFNPDEYYDILFPGVNTFVNNIQYLDPRHWGPSLFATISQ ALWHVIRDDIPAITSQELQRRTERFFRDSLARFLEETTWTIVNAPINFYNYIQEYYSD LSPIRPSMVRQVAEREGTRVHFGHTYSIDDADSIEEVTQRMDLRNQQTVHSGEFIEKT IAPGGANQRTAPQWMLPLLLGLYGTVTPALEAYEDGPNQKKRRVSRGSSQKAKGTRAS AKTTNKRRSRSSRS" CDS 1552..2640 /codon_start=1 /product="VP1" /protein_id="AEO89598.1" /translation="MAPTKRKGECPGAAPKKPKEPVQVPKLLIKGGVEVLEVKTGVDA ITEVECFLNPEMGDPDENLRGFSLKLSAENDFSSDSPERKMLPCYSTARIPLPNLNED LTCGNLLMWEAVTVQTEVIGITSMLNLHAGSQKVHEHGGGKPIQGSNFHFFAVGGDPL EMQGVLMNYRTKYPDGTITPKNPTAQSQVMNTDHKAYLDKNNAYPVECWVPDPSRNEN TRYFGTFTGGENVPPVLHVTNTATTVLLDEQGVGPLCKADSLYVSAADICGLFTNSSG TQQWRGLARYFKIRLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMYGMESQVEEVRV FDGTERLPGDPDMIRYIDKQGQLQTKML" CDS complement(join(2710..4554,4899..5141)) /codon_start=1 /product="large T antigen" /protein_id="AEO89599.1" /translation="MDKVLNREESMELMDLLGLERAAWGNLPLMRKAYLRKCKEFHPD KGGDEDKMKRMNTLYKKMEQDVKVAHQPDFGTWSSSEVPTYGTEEWESWWSSFNEKWD EDLFCHEDMFASDEEATADSQHSTPPKKKRKVEDPKDFPSDLHQFLSQAVFSNRTLAC FAVYTTKEKAQILYKKLMEKYSVTFISRHMCAGHNIIFFLTPHRHRVSAINNFCQKLC TFSFLICKGVNKEYLLYSALTRDPYHTIEESIQGGLKEHDFNPEEPEETKQVSWKLIT EYAVETKCEDVFLLLGMYLEFQYNVEECKKCQKKDQPYHFKYHEKHFANATIFAESKN QKSICQQAVDTVLAKKRVDTLHMTREEMLTERFNHILDKMDLIFGAHGNAVLEQYMAG VAWLHCLLPKMDSVIFDFLHCIVFNVPKRRYWLFKGPIDSGKTTLAAGLLDLCGGKAL NVNLPMERLTFELGVAIDQYMVVFEDVKGTGAESKDLPSGHGINNLDSLRDYLDGSVK VNLEKKHLNKRTQIFPPGLVTMNEYPVPKTLQARFVRQIDFRPKIYLRKSLQNSEFLL EKRILQSGMTLLLLLIWFRPVADFATDIQSRIVEWKERLDSEISMYTFSRMKYNICMG KCILDITREEDSETEDSGHGSSTESQSQCSSQVSDTSAPAEDSQRSDPHSQELHLCKG FQCFKRPKTPPPK" CDS complement(4623..5141) /codon_start=1 /product="small t antigen" /protein_id="AEO89600.1" /translation="MDKVLNREESMELMDLLGLERAAWGNLPLMRKAYLRKCKEFHPD KGGDEDKMKRMNTLYKKMEQDVKVAHQPDFGTWSSSEVCADFPLCPDTLYCKDWPICS KKPSVHCPCMLCQLRLRHLNRKFLRKEPLVWIDCYCIDCFTQWFGLDLTEETLQWWVQ IIGETPFRDLKL" BASE COUNT 1544 a 1017 c 1011 g 1569 t ORIGIN 1 ttttgcaaaa attgcaaaag aatagggatt tccccaaata tttttgctag gcctcagaaa 61 aagcctccac acccttacta cttgagagaa agggtggagg cagaggcggc ctcggcctct 121 tatatattat aaaaaaaaag gccacaggga ggagctgcta acccatggaa tgtagccaaa 181 ccatgacctc aggaaggaaa gtgcatgact gggcagccag ccagtggcag ttaatagtga 241 aaccccgccc ctaaaattct caaataaaca caagaggaag tggaaactgg ccaaaggagt 301 ggaaagcagc cagacagaca tgttttgcga gcctaggaat cttggccttg tccccagtta 361 aactggacaa aggccatggt tctgcgccag ctgtcacgac aagcttctgt gaaagttagt 421 aaaacctgga ctggaacaaa aaaaagagct cagaggattt ttatttttat tttagagctt 481 ttgctggaat tttgtagagg tgaagacagt gtagacggga aaaacaaaag taccactgct 541 ttacctgctg taaaagactc tgtaaaagac tcctaggtaa gtaatccctt tttttttgta 601 tttccaggtt gatgggtgct gctctagcac ttttggggga cctagttgcc agtgtatctg 661 aggctgctgc tgccacagga ttttcagtgg ctgaaattgc tgctggggag gctgctgctg 721 ctatagaagt tcaaattgca tcccttgcta ctgtagaggg cataacaagt acctcagagg 781 ctatagctgc tataggccta actcctcaaa catatgctgt aattgctggt gctcctgggg 841 ctattgctgg gtttgctgct ttaattcaaa ctgttactgg tattagttcc ttggctcaag 901 tagggtatag gttttttagt gattgggatc acaaagtttc cactgtaggc ctctatcagc 961 aatcaggcat ggctttggaa ttgtttaacc cagatgagta ctatgatatt ttgtttcctg 1021 gtgtaaatac ttttgtaaat aatattcaat accttgatcc taggcattgg ggtccttcct 1081 tgtttgctac tatttcccag gctttgtggc atgttattag ggatgatata cctgctataa 1141 cctcacaaga attgcaaaga agaacagaaa gattttttag agactccttg gctagatttt 1201 tggaggaaac tacctggaca attgtaaatg cccctataaa cttttataat tatattcaag 1261 aatattattc tgatctttcc cctattaggc cctcaatggt tagacaagtg gctgaaaggg 1321 aaggtacccg tgtacatttt ggccatactt atagtataga tgatgctgac agtatagaag 1381 aagttacaca aagaatggac ttaagaaatc aacaaactgt acattcagga gagtttatag 1441 aaaaaactat tgccccagga ggtgctaatc aaagaactgc tcctcaatgg atgttgcctt 1501 tacttctagg cctgtacggg actgtaacac ctgctcttga agcatatgaa gatggcccca 1561 accaaaagaa aaggagagtg tccaggggca gctcccaaaa agccaaagga acccgtgcaa 1621 gtgccaaaac tactaataaa aggaggagta gaagttctag aagttaaaac tggggtagat 1681 gctataacag aggtagaatg cttcctaaac ccagaaatgg gggatccaga tgaaaacctt 1741 aggggcttta gtctaaagct aagtgctgaa aatgacttta gcagtgatag cccagaaaga 1801 aaaatgcttc cctgttacag cacagcaaga attcccctcc ccaatttaaa tgaggaccta 1861 acctgtggaa atctactgat gtgggaggct gtaactgtac aaacagaggt cattggaata 1921 actagcatgc ttaaccttca tgcagggtca caaaaagtgc atgagcatgg tggaggtaaa 1981 cctattcaag gcagtaattt ccacttcttt gctgttggtg gagacccctt ggaaatgcag 2041 ggagtgctaa tgaattacag gaccaagtac ccagatggta ctataacccc aaaaaaccca 2101 acagcccagt cccaggtaat gaatactgac cataaggcct atttggacaa aaacaatgct 2161 tatccagttg agtgctgggt tcctgatccc agtagaaatg aaaatactag gtattttggg 2221 actttcacag gaggggaaaa tgttccccca gtacttcatg tgaccaacac agctaccaca 2281 gtgttgctag atgaacaggg tgtggggcct ctttgtaaag ctgatagcct gtatgtttca 2341 gctgctgata tttgtggcct gtttactaac agctctggaa cacaacagtg gagaggcctt 2401 gcaagatatt ttaagattcg cctgagaaaa agatctgtaa aaaatccgta cccaatttcc 2461 tttttgctga gtgaccttat aaacaggaga acccagagag tggatgggca gcctatgtat 2521 ggtatggaat cccaggtaga agaggttagg gtgtttgatg gcacagaaag acttccaggg 2581 gacccagata tgataagata tattgataaa caaggacaat tgcaaaccaa aatgctttaa 2641 acaggtgctt ttattgtaca tatacattta ataaatgctg cttttgtata agccactttt 2701 aagcttgtgt tattttgggg gtggtgtttt aggcctttta aaacattgaa agcctttaca 2761 caaatgcaac tcttgactat gggggtctga cctttgggaa tcttcagcag gggctgaagt 2821 atctgagact tgggaagagc attgtgattg ggattcagtg cttgatccat gtccagagtc 2881 ttcagtttct gaatcttctt ctcttgtgat atcaagaata catttcccca tgcatatatt 2941 atatttcatc cttgaaaaag tatacatact tatctcagaa tccagccttt ccttccattc 3001 aacaattcta gattgtatat ctgttgcaaa atcagctaca ggcctaaacc aaattagcag 3061 tagcaacaag gtcattccac tttgtaaaat tcttttttca agtaagaact ctgagttttg 3121 taaggatttt cttaaatata ttttgggtct aaaatctatc tgtcttacaa atctagcctg 3181 cagggtttta ggaacaggat actcattcat tgtaaccagg cctggtggaa atatttgggt 3241 tcttttgttt aaatgtttct tttctaaatt aaccttaaca cttccatcta aataatctct 3301 caaactgtct aaattgttta ttccatgtcc tgaaggcaaa tcctttgatt cagccccagt 3361 tccttttaca tcttcaaaaa caaccatgta ctgatctata gctacaccta gttcaaaggt 3421 tagcctttcc atgggtaggt ttacatttaa ggctttacct ccacacaaat ctaataaccc 3481 tgcagctagt gttgtttttc cactatcaat gggaccttta aataaccagt atcttctttt 3541 aggtacatta aaaacaatac agtgcaaaaa atcaaatata acagaatcca ttttaggtag 3601 caaacagtgc agccaagcaa cacctgccat atattgttcc agtacagcat ttccatgagc 3661 tccaaatatt aaatccattt tatctaatat atgattaaat ctttctgtta gcatttcttc 3721 tctggtcata tgaagggtat ctactctttt tttagctaaa actgtatcta ctgcttgctg 3781 acaaatactt ttttgatttt tactttctgc aaaaatagta gcatttgcaa aatgcttttc 3841 atgatacttg aagtgataag gttggtcttt tttctgacac tttttacact cttctacatt 3901 gtattgaaat tctaaataca tacccaataa taaaaacaca tcctcacact ttgtctctac 3961 tgcatactca gtaattaatt tccaagacac ctgctttgtt tcttcaggct cttctgggtt 4021 aaaatcatgc tcctttaagc ccccttgaat gctttcttct attgtatggt atggatctct 4081 agttaaggca ctatatagta agtattcctt attaacaccc ttacaaatta aaaaactaaa 4141 ggtacacagc ttttgacaga aattattaat tgcagaaact ctatgtctat gtggagttaa 4201 gaagaatata atattatgcc cagcacacat gtgtctacta ataaaagtta cagaatattt 4261 ttccataagt tttttataca gaatttgagc tttttcttta gtagtataca cagcaaagca 4321 ggcaagggtt ctattactaa atacagcttg actaagaaac tggtgtagat cagaaggaaa 4381 gtctttaggg tcttctacct ttctcttttt cttgggtggt gtggagtgtt gagaatctgc 4441 tgttgcttct tcatcactgg caaacatatc ttcatggcaa aataaatctt catcccattt 4501 ttcattaaag gagctccacc aggactccca ctcttctgtt ccataggttg gcacctataa 4561 aaaaaataat tacttagggc ctttaaatat ttttttattt atctaaatat aagttagtta 4621 ccttaaagct ttagatctct gaagggagtt tctccaatta tttggaccca ccattgcaga 4681 gtttcttcag ttaggtctaa gccaaaccac tgtgtgaagc agtcaatgca gtagcaatct 4741 atccaaacca agggctcttt tcttaaaaat tttctattta aatgccttaa tctaagctga 4801 catagcatgc aagggcagtg cacagaaggc tttttggaac aaataggcca atccttgcag 4861 tacagggtat ctgggcaaag aggaaaatca gcacaaacct ctgagctact ccaggttcca 4921 aaatcaggct gatgagctac ctttacatcc tgctccattt ttttatataa agtattcatt 4981 ctcttcattt tatcctcgtc gccccctttg tcagggtgaa attccttaca cttccttaaa 5041 taggcttttc tcattagggg aaggtttccc caggcagctc tttcaaggcc taaaaggtcc 5101 atgagctcca tggattcttc cctgttaagc actttatcca t //