LOCUS JH712212 156680 bp DNA linear CON 18-MAR-2015 DEFINITION Loa loa unplaced genomic scaffold supercont3.147, whole genome shotgun sequence. ACCESSION JH712212 ADBU02000000 VERSION JH712212.1 DBLINK BioProject: PRJNA37757 BioSample: SAMN00103043 KEYWORDS WGS. SOURCE Loa loa (African eye worm) ORGANISM Loa loa Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Spiruromorpha; Filarioidea; Onchocercidae; Loa. REFERENCE 1 (bases 1 to 156680) AUTHORS Nutman,T.B., Fink,D.L., Russ,C., Young,S., Zeng,Q., Gargeya,S., Alvarado,L., Berlin,A., Chapman,S.B., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Howarth,C., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yandava,C., Haas,B., Henn,M.R., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Genome Sequencing Center for Infectious Disease TITLE The Genome Sequence of Loa loa JOURNAL Unpublished REFERENCE 2 (bases 1 to 156680) AUTHORS Nutman,T.B., Fink,D.L., Russ,C., Young,S., Zeng,Q., Gargeya,S., Alvarado,L., Berlin,A., Chapman,S.B., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Howarth,C., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yandava,C., Haas,B., Henn,M.R., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Genome Sequencing Center for Infectious Disease TITLE Direct Submission JOURNAL Submitted (11-APR-2012) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.1-PreRelease-4/28/2009 Assembly Name :: Loa_loa_V3 Genome Coverage :: 20x Sequencing Technology :: 454 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..156680 /organism="Loa loa" /mol_type="genomic DNA" /submitter_seqid="supercont3.147" /db_xref="taxon:7209" /chromosome="Unknown" gene complement(917..1701) /locus_tag="LOAG_17896" mRNA complement(join(917..1344,1468..1555,1631..1701)) /locus_tag="LOAG_17896" /product="hypothetical protein" CDS complement(join(1081..1344,1468..1555,1631..1677)) /locus_tag="LOAG_17896" /codon_start=1 /product="hypothetical protein" /protein_id="EJD74843.1" /translation="MLSLVITKYLIALTIIAILSVTETDALALAFNPVTFSQNMRVGG NRVFANGNAGQLVVGQRSNRTEQPAQVPQAPQAFPSSDLLGTFLLASLLGSAYGRGSP YSSPYGYYYPYFGYSPYSYGYPPYYYYYYG" assembly_gap 2993..3154 /estimated_length=162 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 4092..12387 /locus_tag="LOAG_08458" mRNA join(4092..4191,4809..4953,5312..5502,5675..5819, 5950..6100,6256..6337,6487..6548,6674..6803,6951..7178, 7298..7454,7675..7743,8179..8253,8443..8597,8912..9130, 9656..9800,10077..10282,10418..10582,10899..11054, 11279..11353,11443..11585,11878..11999,12159..12387) /locus_tag="LOAG_08458" /product="hypothetical protein" mRNA join(4092..4191,4809..4953,5312..5502,5675..5819, 5950..6100,6256..6337,6487..6548,6674..6803,6951..7178, 7298..7454,7675..7743,8179..8253,8443..8597,8912..9130, 9656..9800,10077..10282,10418..10582,10899..11054, 11279..11353,11443..11585,11878..12172) /locus_tag="LOAG_08458" /product="hypothetical protein, variant" CDS join(4099..4191,4809..4953,5312..5502,5675..5819, 5950..6100,6256..6337,6487..6548,6674..6803,6951..7178, 7298..7454,7675..7743,8179..8253,8443..8597,8912..9130, 9656..9800,10077..10282,10418..10582,10899..11054, 11279..11353,11443..11585,11878..11998) /locus_tag="LOAG_08458" /codon_start=1 /product="hypothetical protein" /protein_id="EFO20031.1" /translation="MDGSDEQEQDSTHRHGPTQTLKIAIGKYHKQLLVGCGRLYCSNE NCASSGKLPKLTSNEAAARAIICLRDRARLCEPLPEFLTVKATDPQESLNEETVKKLL EKCRAEDDWYWIRAYLERLLGSRVALLSSFRRNSFRAQLDGNAVDSGVIGTSIEQQSV SQRKRRAQADVDGTELQLETKTDTSSITVNCGEKEIEEEIDRKCYRGEKTSSELALDI TQSSHSDTSASMSLSRTLAGELARSASDSSSMQYASNASQKSYTYYGWINEEKATRSV EEISEIIAQLREGKSPTDMDAAGRCFRLLFIETNEHTNYLNAAMGAVAQLCSIIDFQL QYERAWERDPAGITHIICLMFELPFVQWLEFIEVGFTPLCKMCSNLSEEGQMALASVW ANFGSQWIQERINLMQQAITLRVLTVIDAVGSLPLFTDRIEPLPAAIQALSILYKATL IRSKRDMILPRDTITMNEMTEVHDTDLSAVNVETNDGINSRENNRRRNFSSFLEAFTY NEIELDEEEEIRLARKAPIDAWLVTKTCLPLTELMNTTLSDNISVQDDFVAYKSYENG HAFSVMPEYSFILTTEVKQRFLYLNNRIRQRSERRQALADAITFGVSMEPYLKLNIRR DNIIRDALDSLAAIAMDNSANFKKQLRIQFDGEQAVDEGGVSKEFYQLITDELFCPDY GMFILNEKTGLYWFNSQCNFCDDEFGLIGLLFGLAIYNNILIDVRFPTLVYVKLLARP AVFDELAQIDPELYSGLRQLLECDDDVENIYNYTFQISYKDVYGCNHDEELIPNGAHI PVTLANRKKFVACYADFLLNRSVRRQFDAFSMGFNKVANRGLLRRLFMPDEVEQLVCG VLDLDFDILAHCTKYQNGFTETSQTVKDFWTVAKAMSTEEKKMLLQFITGSDRVPVGG LAKLEVIIARNGDNKERLPTAHTCYNVMLLPDYGDLEITRERITKAISYSRGFGLQ" CDS join(4099..4191,4809..4953,5312..5502,5675..5819, 5950..6100,6256..6337,6487..6548,6674..6803,6951..7178, 7298..7454,7675..7743,8179..8253,8443..8597,8912..9130, 9656..9800,10077..10282,10418..10582,10899..11054, 11279..11353,11443..11585,11878..11998) /locus_tag="LOAG_08458" /codon_start=1 /product="hypothetical protein, variant" /protein_id="EJD74844.1" /translation="MDGSDEQEQDSTHRHGPTQTLKIAIGKYHKQLLVGCGRLYCSNE NCASSGKLPKLTSNEAAARAIICLRDRARLCEPLPEFLTVKATDPQESLNEETVKKLL EKCRAEDDWYWIRAYLERLLGSRVALLSSFRRNSFRAQLDGNAVDSGVIGTSIEQQSV SQRKRRAQADVDGTELQLETKTDTSSITVNCGEKEIEEEIDRKCYRGEKTSSELALDI TQSSHSDTSASMSLSRTLAGELARSASDSSSMQYASNASQKSYTYYGWINEEKATRSV EEISEIIAQLREGKSPTDMDAAGRCFRLLFIETNEHTNYLNAAMGAVAQLCSIIDFQL QYERAWERDPAGITHIICLMFELPFVQWLEFIEVGFTPLCKMCSNLSEEGQMALASVW ANFGSQWIQERINLMQQAITLRVLTVIDAVGSLPLFTDRIEPLPAAIQALSILYKATL IRSKRDMILPRDTITMNEMTEVHDTDLSAVNVETNDGINSRENNRRRNFSSFLEAFTY NEIELDEEEEIRLARKAPIDAWLVTKTCLPLTELMNTTLSDNISVQDDFVAYKSYENG HAFSVMPEYSFILTTEVKQRFLYLNNRIRQRSERRQALADAITFGVSMEPYLKLNIRR DNIIRDALDSLAAIAMDNSANFKKQLRIQFDGEQAVDEGGVSKEFYQLITDELFCPDY GMFILNEKTGLYWFNSQCNFCDDEFGLIGLLFGLAIYNNILIDVRFPTLVYVKLLARP AVFDELAQIDPELYSGLRQLLECDDDVENIYNYTFQISYKDVYGCNHDEELIPNGAHI PVTLANRKKFVACYADFLLNRSVRRQFDAFSMGFNKVANRGLLRRLFMPDEVEQLVCG VLDLDFDILAHCTKYQNGFTETSQTVKDFWTVAKAMSTEEKKMLLQFITGSDRVPVGG LAKLEVIIARNGDNKERLPTAHTCYNVMLLPDYGDLEITRERITKAISYSRGFGLQ" gene complement(<14107..>19563) /locus_tag="LOAG_17897" mRNA complement(join(<14107..14216,14347..14449,15066..15181, 16410..16550,16970..17023,17566..17687,18116..18195, 18648..18856,19081..19155,19530..>19563)) /locus_tag="LOAG_17897" /product="hypothetical protein" CDS complement(join(14107..14216,14347..14449,15066..15181, 16410..16550,16970..17023,17566..17687,18116..18195, 18648..18856,19081..19155,19530..19563)) /locus_tag="LOAG_17897" /codon_start=1 /product="hypothetical protein" /protein_id="EJD74845.1" /translation="MVFELFISYLAGIDGYVLESTALTEFDFENAELLTKDELYNPNA LSLEEVNKHRSDIRGPIASKKRFRRNGINKPTKLWPGGKIPYSISPHYTNLERALLAR AIKQYHDKTCLRFVPRSLYEGDYLFIGKIDGCFSEVGRTNGVQVLSLDDGCLEYTTII HEMMHVVGFYHEHERWDRDDYINIFWKNIDRTAIDQFGKVDLTKTSYYGQPYDYRSIL HYDSLAFSKNGFPTMLPKQKGFATTIGNAKDFSEIDLAKINRMYGCSEAYLTSLQPRA QSSVIYSPPSLKRYDVLPAINDRYFDKFSTEMGHKNCKDRIAACWMTQDRCHSQALFL LMKTLCAKTCKLC" assembly_gap 15751..15993 /estimated_length=243 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 21099..21849 /estimated_length=751 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 24287..24841 /estimated_length=555 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 29104..29645 /estimated_length=542 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 31075..31563 /estimated_length=489 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<31889..>34830) /locus_tag="LOAG_12764" mRNA complement(join(<31889..31946,32388..32513,33580..33681, 34419..34478,34808..>34830)) /locus_tag="LOAG_12764" /product="hypothetical protein" CDS complement(join(31889..31946,32388..32513,33580..33681, 34419..34478,34808..34830)) /locus_tag="LOAG_12764" /codon_start=1 /product="hypothetical protein" /protein_id="EFO15744.1" /translation="MKRPLSLRYIDKDKIDYILSSRKWKSFKSCEVWDICISEKVQVG YYIVDWINLLSTKLILLMSLKNGLENSVCDVDDIHDVDVDDDNNNDNNNNNNSSGQVR RGLYDPMLTYTDSIDKIAAN" assembly_gap 36277..37304 /estimated_length=1028 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 38662..38858 /estimated_length=197 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 42661..43263 /estimated_length=603 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <45049..>45210 /locus_tag="LOAG_13858" mRNA <45049..>45210 /locus_tag="LOAG_13858" /product="hypothetical protein" CDS 45049..>45210 /locus_tag="LOAG_13858" /codon_start=1 /product="hypothetical protein" /protein_id="EFO14661.1" /translation="MNAYQLIIENLAKILKTTVNDEVSLKNDNFVPTMIIMLADYCDN SNCSYDNCIK" assembly_gap 46550..46784 /estimated_length=235 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 48216..>49551 /locus_tag="LOAG_11111" mRNA join(48216..48493,48643..48872,48970..49098,49370..>49551) /locus_tag="LOAG_11111" /product="hypothetical protein" CDS join(48270..48493,48643..48872,48970..49098,49370..49551) /locus_tag="LOAG_11111" /codon_start=1 /product="hypothetical protein" /protein_id="EFO17388.2" /translation="MISVMNGINNPASFGFSGSFMDKPFYQKFATANVTTPASVAVVV TTAAATAASSSGSSATNENDRTSTPPALATSSSSAASSSQVMNVMSSLPGTHHAHAGH SQHYPYSYDWTSPHQAAAAAQAAHLSAQQAVVQQAAAVAANVASVSSASVSCVPSLGS SGIASPNAVAKAAFLSPSTATGKFTYFHFIQIFKCFDMMNPMCQADFYGSNFHAAHAA AVATGHTWAYGYPQQYPFGAHPYPGSMVADMTGLAG" assembly_gap 54057..54558 /estimated_length=502 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 57069..57983 /estimated_length=915 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <58355..>59507 /locus_tag="LOAG_12837" mRNA join(<58355..58373,58932..59113,59412..>59507) /locus_tag="LOAG_12837" /product="hypothetical protein" CDS join(58355..58373,58932..59113,59412..59507) /locus_tag="LOAG_12837" /codon_start=1 /product="hypothetical protein" /protein_id="EFO15672.2" /translation="MDNDWFDATLDWTGNISSRKKRKPYTKYQTLELEKEFLYNTYVS KQKRYELAKNLYLSERQVKIWFQNRRMKDKKQKQRSSVDQSCSSQLMMSSLKGE" assembly_gap 62612..63049 /estimated_length=438 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 66319..67017 /estimated_length=699 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <67545..>68397 /locus_tag="LOAG_11246" mRNA join(<67545..67626,67886..67950,68284..>68397) /locus_tag="LOAG_11246" /product="FMRFamide-family peptide" CDS join(67545..67626,67886..67950,68284..68397) /locus_tag="LOAG_11246" /codon_start=1 /product="FMRFamide-family peptide" /protein_id="EFO17253.1" /translation="MSTFKILIIALLLVINHFCCSDSKRLQDNDFARQILFRGNFEPM RYYLSPNDAYLVKRVPSAADMMIRFGKRFTTYDGSIGDINDD" gene <70823..>72003 /locus_tag="LOAG_11247" mRNA join(<70823..71025,71295..71363,71554..71613, 71884..>72003) /locus_tag="LOAG_11247" /product="hypothetical protein" CDS join(<70823..71025,71295..71363,71554..71613,71884..72003) /locus_tag="LOAG_11247" /codon_start=3 /product="hypothetical protein" /protein_id="EFO17254.2" /translation="MFQSNQSVRNTANPEQKIKTIGMSRRLFSPCHIMPSIFTDHWRS SNYLPCGILRFRDEDLLSSQVGEIIDNAEKFSVSIDARNFAPNEIMVNAKGNELKISA IHVDNNGRKQFERRYVIPDNVMTECNETKISPNGILTITLFKKHLPS" assembly_gap 74101..74404 /estimated_length=304 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <74794..>76442 /locus_tag="LOAG_14356" mRNA join(<74794..75215,75325..75512,75692..75779, 76250..>76442) /locus_tag="LOAG_14356" /product="hypothetical protein" CDS join(74794..75215,75325..75512,75692..75779,76250..76442) /locus_tag="LOAG_14356" /codon_start=1 /product="hypothetical protein" /protein_id="EFO14168.1" /translation="MNQANKWSKIPKYDSFAQEAVESRFSLDNNWGNWPINSNLTSSA LFPDNSDDKFQNWQIEPPTTEETLSINKSLITSATSTNISIESNENQNILMNVLEGMK FWPGLFPIFLNKTIPEITANILTTTAIDANVQMNSTPEWKKPLELVRIFATQSQTLKP ITDTVVHMEIQYGNEVPFGNTVNRSVQIGDNISLVIRSKSLNSKSDIYNFFVHSCYAS DKDGIEKLMLIDRFGCSVQPKLTGQMIRMKNAGQTYYYFRVNAFKFPGADDVYFTCAI DMSENEHFPVLILFDKYENR" assembly_gap 77136..77770 /estimated_length=635 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <78864..>82618 /locus_tag="LOAG_09397" mRNA join(<78864..78973,79439..79526,79662..79924,80149..80328, 80409..80535,80731..80815,80917..81008,81186..81260, 81373..81463,81557..81654,81822..81947,82015..82096, 82593..>82618) /locus_tag="LOAG_09397" /product="PSP family protein" CDS join(78864..78973,79439..79526,79662..79924,80149..80328, 80409..80535,80731..80815,80917..81008,81186..81260, 81373..81463,81557..81654,81822..81947,82015..82096, 82593..82618) /locus_tag="LOAG_09397" /codon_start=1 /product="PSP family protein" /protein_id="EFO19096.2" /translation="MDVRDEREPGECSRTPSPRSEVTRVGIKRTPKRKTHRYENAKFR KDESVIELVDLVEVDHDEDIEVLQVSDEGEDSDVGELFVLDTEGAEIIEVEEVKKNLV VSPTSEHGLKKEERYVTQKTSRTKGKDDVFDVTKILTNDAILPSPSEEKKESTFKISC FNCGGEHTLQQCDIPLNQRRISANRAAHYSNKRSIQERYTTAGDTESPGTSNMRPGEI SDTLREALGIGPNDIPEWIYRMRRRGFIDGYPPGYLAEALDQSSGEDSLLEFHTDDKT LGTPVIMREKDKKRKRLTVSADKVIAYPGFNYYKRCLRDRERFRVPRFDEYVRYLQEY AKERHAQQLLDDSYERNRKRGHYKNEHKNDRKRSRNDSDDSVVLLSDELDESVEMSTR SLEETVLEQNMEHNTSIADHETSTSYVEFGSPSVGSSGGKTSFGTPVACRLEHDKKKP SLEKFRDGVVPFEAVEESTGNRVAIYRKMN" gene <83083..95517 /locus_tag="LOAG_17898" mRNA join(<83083..83133,83396..83526,83904..84030,84183..84327, 84627..84760,84942..85046,85355..85470,85745..85832, 86301..86453,86899..87072,87348..87484,87575..87659, 87833..87925,88928..89059,89320..89511,89627..89763, 89918..89972,90067..90180,90353..90520,90814..90939, 91202..91372,91657..91747,91886..91988,92330..92465, 93537..93662,93872..93995,94108..94189,94360..94486, 94576..94699,94854..95071,95370..95517) /locus_tag="LOAG_17898" /product="pre-SET domain-containing protein family protein" mRNA join(<83083..83133,83396..83526,83904..84030,84183..84327, 84627..84760,84942..85046,85355..85470,85745..85832, 86301..86453,86899..87072,87348..87484,87575..87659, 87833..87925,88928..89059,89320..89511,89627..89763, 89918..89972,90067..90180,90353..90520,91202..91372, 91657..91747,91886..91988,92330..92465,93537..93662, 93872..93995,94108..94189,94360..94486,94576..94699, 94854..95071,95370..>95468) /locus_tag="LOAG_17898" /product="pre-SET domain-containing protein family protein, variant" CDS join(83083..83133,83396..83526,83904..84030,84183..84327, 84627..84760,84942..85046,85355..85470,85745..85832, 86301..86453,86899..87072,87348..87484,87575..87659, 87833..87925,88928..89059,89320..89511,89627..89763, 89918..89972,90067..90180,90353..90520,90814..90939, 91202..91372,91657..91747,91886..91988,92330..92465, 93537..93662,93872..93995,94108..94189,94360..94486, 94576..94699,94854..95071,95370..95468) /locus_tag="LOAG_17898" /codon_start=1 /product="pre-SET domain-containing protein family protein" /protein_id="EJD74846.1" /translation="MEIDEGLDCISEPSNRSGRNVDVDIDVNAFLVDETSSDDSDEIA VFDSRDLSLLSDERKTLCEERMRNLYKTLRYNGSEYKTRRNIYGFLTLDTDFFDHIQE TITVDFNEEKIAEAVIVFHVNKMGIKDGAAKMAVSVFDFIVLLMDYIWKERDKTVENY SISRIAGYLGVDRAHMLILGNLINNDIALAPSEIAVKTLSEPIELIVMLTMLLAQMYG WPVAEDFNMKWKSIETSSIASDEEAMQSMDDFVAIAREVLEDFKNDQSSPLCRHINDD CINDLVMISSELTKYASNLLNELRNLSSPNESISQGNILTQDRINQAEILVNEHCANM TEKSVIDSQKNDQKFSAITSEEVSVVNVTHNEHIERNYVIISDPVNISDIPNGSFCLA RQQKAYNFVRCQIVEKVSPREYNVLFGDGYEEIIDISRIARKIEGHLHMWEGVRVCAL YEPKLQFGRYRKAFYSGIVGVGPHGFSRNEMLIFFDNGIDSFVHERTVYILAEQKCRL HNYKEEIDRRNNWCLVPQFRQKFVKHYLKNFPDWPLVPMKRKENTQRVNILREGRPHS AYVLRTERQFALLRFPIRGRFGADCVVTPCIRHRHIDEWIYRGSERLEAIRQTIDRLE KVEQQEKMGVKVPVRSRREARLAHSLGYKFSLPGQNISDTNLSKKVELCPRGRALLSD SEQIYIRRQTARKGGILGVQHENDFQDYSVIEGRVPRLRKEKNLFVQDIPEWNNLQQV VHSHCTIRCLQCLDKDPYDKEFGGCSPYMIPLLVGWSREIVTFTRRAKVAHSRKATGS AVVYRTPCGISIYNLNQITKYLKDTSSRLTIDLFTFDRTIRPNIIYRTPVKAKLVDDF TNGYEAIPISVYNEIDDELPPKVEYDPRRYPYDKETDISSISLDFCSGCTCTDDCADE TRCECRLLTRSEVLRLDKSLQPSFAKGYMYRNLALGGADESYLSGLYECNEKCGCSRS NCHNRVVQQEMKIPLELFKTEKMGWGVRSMIDIPPGVFLCTYAGAILTDSQAEKEGKA FGDEYFADVNLVDNVEKEKHNAGVDLGDSNDGYYSDDENNCGGGPNLSLESGLITTDE DSSEEDDDYDSGQDSSFSSEGNHSETRTVKTQKRRKLMQEGDEEQQNSSIRESEKNEL AAADLDYARSSLVMAESDFAGGTKSDNDDMPAVEPAGPPEGRFDMIRYVENMELPSLY TIDAKKKGNIGRFFNHSCQPNIRAQLVYVDTHDFRLPWIAFFTTTKISAGSELFWDYG YSEGTVDGKQLECFCGSRTCRKRLL" CDS join(83083..83133,83396..83526,83904..84030,84183..84327, 84627..84760,84942..85046,85355..85470,85745..85832, 86301..86453,86899..87072,87348..87484,87575..87659, 87833..87925,88928..89059,89320..89511,89627..89763, 89918..89972,90067..90180,90353..90520,91202..91372, 91657..91747,91886..91988,92330..92465,93537..93662, 93872..93995,94108..94189,94360..94486,94576..94699, 94854..95071,95370..95468) /locus_tag="LOAG_17898" /codon_start=1 /product="pre-SET domain-containing protein family protein, variant" /protein_id="EJD74847.1" /translation="MEIDEGLDCISEPSNRSGRNVDVDIDVNAFLVDETSSDDSDEIA VFDSRDLSLLSDERKTLCEERMRNLYKTLRYNGSEYKTRRNIYGFLTLDTDFFDHIQE TITVDFNEEKIAEAVIVFHVNKMGIKDGAAKMAVSVFDFIVLLMDYIWKERDKTVENY SISRIAGYLGVDRAHMLILGNLINNDIALAPSEIAVKTLSEPIELIVMLTMLLAQMYG WPVAEDFNMKWKSIETSSIASDEEAMQSMDDFVAIAREVLEDFKNDQSSPLCRHINDD CINDLVMISSELTKYASNLLNELRNLSSPNESISQGNILTQDRINQAEILVNEHCANM TEKSVIDSQKNDQKFSAITSEEVSVVNVTHNEHIERNYVIISDPVNISDIPNGSFCLA RQQKAYNFVRCQIVEKVSPREYNVLFGDGYEEIIDISRIARKIEGHLHMWEGVRVCAL YEPKLQFGRYRKAFYSGIVGVGPHGFSRNEMLIFFDNGIDSFVHERTVYILAEQKCRL HNYKEEIDRRNNWCLVPQFRQKFVKHYLKNFPDWPLVPMKRKENTQRVNILREGRPHS AYVLRTERQFALLRFPIRGRFGADCVVTPCIRHRHIDEWIYRGSERLEAIRQTIDRLE KVEQQEKMGVKVPVRSRREARLAHSLGYKFSLPGQNISDTNLSKKVELCPRGRALLSD SEQIYIRRQTARKGGILGVQHENDFQDYSVIEGRVPRLRKEKNLFVQDIPEWNNLQQV VHSHCTIRCLQCLDKDPYDKEFGGCSPYMIPLLVGWSREDTSSRLTIDLFTFDRTIRP NIIYRTPVKAKLVDDFTNGYEAIPISVYNEIDDELPPKVEYDPRRYPYDKETDISSIS LDFCSGCTCTDDCADETRCECRLLTRSEVLRLDKSLQPSFAKGYMYRNLALGGADESY LSGLYECNEKCGCSRSNCHNRVVQQEMKIPLELFKTEKMGWGVRSMIDIPPGVFLCTY AGAILTDSQAEKEGKAFGDEYFADVNLVDNVEKEKHNAGVDLGDSNDGYYSDDENNCG GGPNLSLESGLITTDEDSSEEDDDYDSGQDSSFSSEGNHSETRTVKTQKRRKLMQEGD EEQQNSSIRESEKNELAAADLDYARSSLVMAESDFAGGTKSDNDDMPAVEPAGPPEGR FDMIRYVENMELPSLYTIDAKKKGNIGRFFNHSCQPNIRAQLVYVDTHDFRLPWIAFF TTTKISAGSELFWDYGYSEGTVDGKQLECFCGSRTCRKRLL" assembly_gap 88262..88669 /estimated_length=408 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(96098..>99716) /locus_tag="LOAG_08875" mRNA complement(join(96098..96455,96554..96738,96908..96990, 97112..97220,97451..97589,99549..>99716)) /locus_tag="LOAG_08875" /product="hypothetical protein" CDS complement(join(96228..96455,96554..96738,96908..96990, 97112..97220,97451..97589,99549..99716)) /locus_tag="LOAG_08875" /codon_start=1 /product="hypothetical protein" /protein_id="EFO19618.1" /translation="MLIESEIREKAYRLVTFSAVTFSFVAILAVFITLPMVNNYINSI NMRVQSEMDFCKLSVRDVMMEVNEYRAGPRGATPIFQKLLHNQTIIAGRAKRQSSRCE GCCLPGLPGPDGPPGKHGIPGRPGAPGAPGFPGRPPAICEEAVEPPCSPCPPGEPGPP GSPGDQGNAGPPGYPGRNGNDGPPGPQGPPGQPGPPGEPGREGPRGEPGRPAMSSPAT PGDPGPPGEPGPQGLPGEQGPTGRPGSEGPQGLQGPPGPPGQPGQPGEDGQPGPPGHP GPQGERGICPKYCALDGGVFFEDGTRR" assembly_gap 100320..100426 /estimated_length=107 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <101382..>101534 /locus_tag="LOAG_14659" mRNA <101382..>101534 /locus_tag="LOAG_14659" /product="hypothetical protein" CDS <101382..101534 /locus_tag="LOAG_14659" /codon_start=1 /product="hypothetical protein" /protein_id="EFO13869.1" /translation="RTPYIYYELLGESVGPPEKPYDFKEPELKMINNNLFISLSIYPS IYKLEL" assembly_gap 102836..103418 /estimated_length=583 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<103640..>106396) /locus_tag="LOAG_13795" mRNA complement(join(<103640..103867,104008..104192, 105262..105344,105591..105699,105760..105898, 106235..>106396)) /locus_tag="LOAG_13795" /product="hypothetical protein" CDS complement(join(103640..103867,104008..104192, 105262..105344,105591..105699,105760..105898, 106235..106396)) /locus_tag="LOAG_13795" /codon_start=1 /product="hypothetical protein" /protein_id="EFO14721.1" /translation="MEIEAREKAYTFVTYTAVTFSFIAILSIFVTLPMVNNYITMIGS RVSDEMEYCQTSAREVMREMREHRAPSEGSGALHVADDSIRNSFNFTRAKRQAGCEEC CLPGLPGPDGPPGKPGLPGRPGAPGAPGFPGRPPRICEELEPPPCKPCPPGLPGQPGP VGDKGPSGPPGPPGRSGIPGRPGAPGPPGPPGPHGTPGIDGPPGDPGRSVITAPSSPG DPGPAGAQGQPGEPGDMGPPGSPGRPGAPGARGPPGPPGQRGIPGEIGEPGQPGQPGQ SGEPGICPKYCALDGGVFYEDGTRR" assembly_gap 106794..106947 /estimated_length=154 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 107263..111744 /locus_tag="LOAG_07794" mRNA join(107263..107478,107698..107905,108181..108349, 108491..108602,108700..108807,109019..109147, 109370..109462,109628..109846,109937..110037, 110385..110604,111024..111311,111526..111744) /locus_tag="LOAG_07794" /product="hypothetical protein" CDS join(107311..107478,107698..107905,108181..108349, 108491..108602,108700..108807,109019..109147, 109370..109462,109628..109846,109937..110037, 110385..110604,111024..111311,111526..111654) /locus_tag="LOAG_07794" /codon_start=1 /product="hypothetical protein" /protein_id="EFO20693.1" /translation="MIRRLPEDVVNRIAAGEVIVRAANAIKELIENALDAGATEIVIT AKNGGLDLLKVQDNGKGIAKDDLPIVCERFTTSKLERYEDLECMSTFGFRGEALASIT HVAKVTIISKIPDSPCAYVGRYTDSKLQGNIKPSAGLDGTTVTAEDLFYNCPSRRRAL KYPADEMNRIADVVVRYAIHNPSVSFTLRRCGSGSDFRTAGTNNLCETISSLLGGKFS KDLILLNHGDSALYFTLKGCLVRPTASCTAESLQDRQNRQKVFYLFINGRSVECLALK QALDVVFAAQNTMSPFVMISLQIEPKRVDVNVHPTKSIVYFLEQDSIISSIQDYVENL ILSLAGSCDVHPKFPLMTDSNDNSSSKSVDTMTASSTKKKQLTMLVSESLGGPPPSSS IKSPKVYPHQLVRTDAKERRLEEFVASQSLIVSSPCATNDFNSSVKTLGDGEWRKFEF ESLQSMKEAICTTASVSLRSLFKEHIYVGAVNVDQVLIQHSTSIYLVDAQDCLRNFFY QILVLSFGNFGSFKLSECAPLAELLHIADSNLSPTEVQQKAATVIENREMLDDYFCLS ITENGNLNSIPSLIDGFIPQLESLPQLLLTLANDITWNNEQACFEQVCWALSEFFCLK KEFCDGEAISGLSTEKLSWKKCL" gene complement(111740..119564) /locus_tag="LOAG_07795" mRNA complement(join(111740..112129,112419..112606, 112703..113001,113516..113751,114052..114124, 114464..114654,114859..114999,115485..115654, 116014..116230,116454..116671,116850..116976, 117308..117533,118600..118773,119275..119564)) /locus_tag="LOAG_07795" /product="hypothetical protein" CDS complement(join(111884..112129,112419..112606, 112703..113001,113516..113751,114052..114124, 114464..114654,114859..114999,115485..115654, 116014..116230,116454..116671,116850..116976, 117308..117533,118600..118773,119275..119279)) /locus_tag="LOAG_07795" /codon_start=1 /product="hypothetical protein" /protein_id="EFO20694.2" /translation="MEHIYDRANRQIAIAVATYPYSFLFATLLFSAFLSSSLFNSTLE DDIRRSFSPPKSRAAREEEIYMQFYNIASVPQRVFIIFYAKDGGTILRENHIEEMYQI HRIMTDVLNNTEHFDVPMCHPFCDINKPINLFWDEIRKNVNDTDYDQNAIFAFPTSTI YGQELFLGSNLFDVQSSDHVFPNRSTIIQVGTIMLWHLVNADNPHKLKMLQNVTITLF EMSRKRNITKWINFNIFGDEIANREMIRGAYQATKLMTVGFIFLICFVFLVVWRKMEL RLLPPIVFATILSPLLAAISSFGIISWLRLPIYSMMCVTPFLILGIGVDDAFIMIQAW TRLRTVTSRNERLAQVFVEIGPSISITSITNLIAFGIGYLTPTPQMSLFCLCTSFACL LDYIFTFTLLAPILYLADKSEKGYVMAKKVPKNELGEQFLRSYSKLICSWKGQIIAIT ILMVLYSLSSIGVMKMKSTFEPVKAFPSDSISTSSFIVLRHVFDEFFPLQVVINNPPN ISDSTEYNEFHDMIRSLEAVPNSYGPNQTMIFLQTYENFDRKIYNFFNMLGLADQEDF KPSYDNLPMFLDHIQNPPFIKMRIDENGEQKLVSFVITATARNMSEWSNRAEYVDACR TVFRNYPRFNATVYDGDSAVLDLILTAKKDLIGSITVTVICMAIVCLFFIGSKIGVLI IASTISSICFTLVGSLSWWGADMDPVTMVDVLIATGFSVDYTAHIAYKFYKLTGDREE RIKQSFREMFSPMLQAGISTALCMLPLIFVPTYAILTFAKTVFLDVGLALLHGLFILP ILLVTLCRYNREETNTGKTIMTSGMENNDMNCGSLLEK" assembly_gap 120967..121237 /estimated_length=271 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(125325..>127461) /locus_tag="LOAG_07212" mRNA complement(join(125325..125727,126027..126152, 126253..126361,126811..126972,127345..>127461)) /locus_tag="LOAG_07212" /product="hypothetical protein" CDS complement(join(125363..125727,126027..126152, 126253..126361,126811..126972,127345..127461)) /locus_tag="LOAG_07212" /codon_start=1 /product="hypothetical protein" /protein_id="EFO21272.2" /translation="MDGSIGSCVICAQNLCINNFSSLPCGHTFHYKCVLRWLLHSEQC PTCRARTLPKHIVKRLYFANCNDKTMNDAGSSATATTADHNNKSASTTNTSGKIDEVN AGFHNNDEEYDNEDYSDDYSSDPEDGIHGLIDDSTDSDDSSEITVEDGESETETEGYG ESEEFHETSDADMASVLDASISDTSSVSLGTFSEAFSEDDAVNISSVNYDNMETINSF DNHEEVGNNDNNTHTSVLLTEHVSGDDNGDISDDEHSSGSDDSNDSNDDFDSHEFNRL LDCFTLDLRVFNRYIS" gene <128909..>129811 /locus_tag="LOAG_07213" mRNA join(<128909..128940,129145..129267,129326..129385, 129459..129499,129577..129623,129656..>129811) /locus_tag="LOAG_07213" /product="hypothetical protein" CDS join(128909..128940,129145..129267,129326..129385, 129459..129499,129577..129623,129656..129811) /locus_tag="LOAG_07213" /codon_start=1 /product="hypothetical protein" /protein_id="EFO21273.1" /translation="MSTAVNDMKSNDNIITDNKITLSYAIQAMYNLMNTMNTLILLED CTEASFNMNSFENRRLDHFKEMEAIIQTIATSDDSKCMDRSAFEYMTYPAKTNTHGLI WYQMVIYYYPTAMKDPVSFRWTLSSHFRNTMQPLISGKDSMKAPPQFMLY" gene complement(129690..>131151) /locus_tag="LOAG_17899" mRNA complement(join(129690..129957,130505..130665, 131025..>131151)) /locus_tag="LOAG_17899" /product="hypothetical protein" CDS complement(join(129814..129957,130505..130665, 131025..131151)) /locus_tag="LOAG_17899" /codon_start=1 /product="hypothetical protein" /protein_id="EJD74848.1" /translation="MSDSWGHDQVGSQCQMPQTTHRALHTPFALFGLGRSPNFVDYVH IGSPRMPLTGGLYYGNQHYYLKQIVPNSRLIVVPPKGDGIHWQSRLYLTPSQLIKQSL MVLISVCMILLLVVVFLHYRERRADKHERQAQSHRFHFDAM" gene complement(<131268..>134728) /locus_tag="LOAG_17900" mRNA complement(join(<131268..131634,131796..131962, 132357..132579,133104..133250,133429..133646, 133923..134048,134546..>134728)) /locus_tag="LOAG_17900" /product="FG-GAP repeat family protein" CDS complement(join(131268..131634,131796..131962, 132357..132579,133104..133250,133429..133646, 133923..134048,134546..134728)) /locus_tag="LOAG_17900" /codon_start=1 /product="FG-GAP repeat family protein" /protein_id="EJD74849.1" /translation="MRWFSVKHPWSIPQVALCLIMHAVYVNGKLKGRVCAYGDIDRDL YTDIIVQDHDRLKTYFQNENGEFSEAGQNINLGSSQIVSCAVGDFNGDSVPDILVSRK IPNGKKGYESTVYIFSYSAYKPVLLNATLLDELAVMDVNGDGISDVVGFRNNKSLFCQ LGSAGGNFSSCEHFFSGFDNKHDIIPYERFLHSFVDINGDLSAEIIFGIKISNRLKMQ AWRRRSNELWELDHELIADLPVESCPTNYFGAVLFADFDADGVVDIGLPCCADATCRK VVVINMWNHYIGAWQDFHITGLEGSDLVSKKDEGNVVFRVGDFSLDGYPDLIALVREK TQNPMILENVPCTDCISNASRRFELRTSPRLIQPADVSLGQIQLASFFDLKEDGTLDV LLEYKDVDQSMAVDFIRCEDKGDTTFLKVQVFSSSCDQFCGSTKTKIGTPPFHYLLFR KFNDNSNPRTSRAVYNKSASLFYYDL" gene complement(<134834..>135118) /locus_tag="LOAG_07215" mRNA complement(<134834..>135118) /locus_tag="LOAG_07215" /product="hypothetical protein" CDS complement(134834..135118) /locus_tag="LOAG_07215" /codon_start=1 /product="hypothetical protein" /protein_id="EFO21275.1" /translation="MPRDGKIRPHINRLESLSFAKKGKEINGRSCIALPSTSLHLTVT GHNAITARSVTALSVTSLFRVIVTSADRSSTDRLSLSQETLNDPRFGLTQ" gene complement(<135858..>143530) /locus_tag="LOAG_17901" mRNA complement(join(<135858..136044,136277..136456, 137428..137519,137675..137901,138088..138295, 138550..138713,138800..138887,139216..139299, 139556..139775,140055..140182,140632..140842, 141242..141429,141898..142089,143069..143290, 143429..>143530)) /locus_tag="LOAG_17901" /product="ribonuclease P/MRP protein subunit POP1 containing protein" CDS complement(join(135858..136044,136277..136456, 137428..137519,137675..137901,138088..138295, 138550..138713,138800..138887,139216..139299, 139556..139775,140055..140182,140632..140842, 141242..141429,141898..142089,143069..143290, 143429..143530)) /locus_tag="LOAG_17901" /codon_start=1 /product="ribonuclease P/MRP protein subunit POP1 containing protein" /protein_id="EJD74850.1" /translation="MEESEEDDRCSRPRGVNVIHLVKERVRQIAELIQAVDNRVLISG EVTKGPRTAVQRLPRHMRRRAMSYNIKRFPRMQRRFAISAVAASKHRQKPPSRFWRRR PRNLLLNYIRRQRKHVWLETHIWHAKRFRMIQKWGYNLPFCSYQRAFRPSHRDAMRHC VVRDVSFLHCFQIIGTSQAAIIELLRNICAPEAGATFAFKTALDGHFEMPVMLYEPSE YPRGFISPARFLWSRHRTDEKYTLVIWTHPSSSKNVLSKFKDLLKLEKQDQAVDFVEI DKVPRSIDEWRLRNLQIKTDVYVNGEGLKLLDLSDQLVRFRLYGPKSFEILREVLAVV EENDLQDSWMKEFVSSNQYWRNECSKHTPGEFPDGTVFSLLVEDPRLSRPLRKMKPTE TDGCSAKSLSVDSLPLPPNDFWNAEIRKKVLEKKLTETDLQKKRNTQLQPVKTSEAKI PIILVVRNTGTGTTSPFTGLDLITPSGFGLEFWLALQYGTARSVGLKDQKFLELESSR FNFPADVPDCDAGLNEFKEEYINLQEKYIRRPHNRRVKYWSNLSIKYPFTFQFSELSH DWLENSGSKGTAYVIRDHRTLMSIEKWLVGRGPMPKESIMNSAALVPVSLISTTQGRP QRFALICAPIDEDFLTVAKLPKGDNAIKIIEHPRTSTLKPIFGNKEDEEDQRNEVGLE DFISLDVTASEKHISLSSLFPDKEMLRKQKIKRKKKEKREKAKAAKRLRKNPENNQGT STSKQLTSGTEELEKEEMEFIKYNSSCSRPIIGRIVRGDYSFVHGRGFAIGYCCLPAL KQLYHGVVLFRNITSRCYHPARITLIKNQLDL" assembly_gap 136773..137028 /estimated_length=256 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 142307..142546 /estimated_length=240 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(143848..146357) /locus_tag="LOAG_09458" mRNA complement(join(143848..144253,144899..145107, 145523..145616,145767..145862,146253..146357)) /locus_tag="LOAG_09458" /product="hypothetical protein" CDS complement(join(144074..144253,144899..145107, 145523..145616,145767..145862,146253..146309)) /locus_tag="LOAG_09458" /codon_start=1 /product="hypothetical protein" /protein_id="EFO19037.1" /translation="MNFAAQLLKMDSVLCTTIRHKTELSKNTLDMLLGKVLKHTHIGN DKIPCVQVRCRLNDFDEYIKKYFSRPIDLWALDPKNAAGLGDTILITKCDVNERPAKL VTHIVDRVMFKYGNIIDPITKKRVIKEKYEDEINLQTKLVKEIIEEPSSYDVLLFEEK RDIQQRRLNTRKMAMSRRELSNQRRVSTRRGIKDTSKEKEEILERDKEQDD" gene complement(148009..152386) /locus_tag="LOAG_09459" mRNA complement(join(148009..148323,148572..148728, 149194..149327,149596..149731,149880..150037, 150455..150571,151017..151113,151229..151370, 151578..151715,151826..151904,152165..152386)) /locus_tag="LOAG_09459" /product="platelet-activating factor acetylhydrolase isoform 1b alpha subunit" CDS complement(join(148250..148323,148572..148728, 149194..149327,149596..149731,149880..150037, 150455..150571,151017..151113,151229..151370, 151578..151705)) /locus_tag="LOAG_09459" /codon_start=1 /product="platelet-activating factor acetylhydrolase isoform 1b alpha subunit" /protein_id="EFO19038.2" /translation="MIKSNGFTGKEVDISSPFTKKVMDLEAKLQEAEREYIHGAPTRE KRQPGEWIPRPPEKFCLSGHRSPITRVIFHPVYSIIASSSEDSTIKVWDFETGDFERS IKGHTDAVQDLAFDNGGKLLASCSADMTIKIWEFVQTFDCMKTLKGHDHNISSIAFLP SGDHLLSASRDHLVKMWEVATGYCIRTFAGHNEWVRMVRVHHDGNMFASCSNDQTICI WNTLSKECKMQFFDHEHVVECVQWAPDKALRYVAEAEQDHSSQMNGDAKKTDSMIAPK LGPILVSGSRDKTIKFFDINAGCCLFTLIGHDNWVRGLRFHPAGKYLLSVADDKTLRV WAIAQKRCAKTLDAHKHFVSSLDFHSSLPYVVTSSVDMTIKVWECR" assembly_gap 152885..152926 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="unspecified" CONTIG join(ADBU02003799.1:1..2992,gap(162),ADBU02003800.1:1..12596, gap(243),ADBU02003801.1:1..5105,gap(751),ADBU02003802.1:1..2437, gap(555),ADBU02003803.1:1..4262,gap(542),ADBU02003804.1:1..1429, gap(489),ADBU02003805.1:1..4713,gap(1028),ADBU02003806.1:1..1357, gap(197),ADBU02003807.1:1..3802,gap(603),ADBU02003808.1:1..3286, gap(235),ADBU02003809.1:1..7272,gap(502),ADBU02003810.1:1..2510, gap(915),ADBU02003811.1:1..4628,gap(438),ADBU02003812.1:1..3269, gap(699),ADBU02003813.1:1..7083,gap(304),ADBU02003814.1:1..2731, gap(635),ADBU02003815.1:1..10491,gap(408),ADBU02003816.1:1..11650, gap(107),ADBU02003817.1:1..2409,gap(583),ADBU02003818.1:1..3375, gap(154),ADBU02003819.1:1..14019,gap(271),ADBU02003820.1:1..15535, gap(256),ADBU02003821.1:1..5278,gap(240),ADBU02003822.1:1..10338, gap(42),ADBU02003823.1:1..3754) //