LOCUS JH611157 443796 bp DNA linear CON 18-MAR-2015 DEFINITION MAG: SAR86 cluster bacterium SAR86A genomic scaffold Contig_1, whole genome shotgun sequence. ACCESSION JH611157 AHBG01000000 VERSION JH611157.1 DBLINK BioProject: PRJNA76773 BioSample: SAMN02954345 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG. SOURCE SAR86 cluster bacterium SAR86A (marine metagenome) ORGANISM SAR86 cluster bacterium SAR86A Bacteria; Pseudomonadota; Gammaproteobacteria; SAR86 cluster. REFERENCE 1 (bases 1 to 443796) AUTHORS Dupont,C.L., Rusch,D.B., Yooseph,S., Lombardo,M.J., Richter,R.A., Valas,R., Novotny,M., Yee-Greenbaum,J., Selengut,J.D., Haft,D.H., Halpern,A.L., Lasken,R.S., Nealson,K., Friedman,R. and Venter,J.C. TITLE Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage JOURNAL ISME J 6 (6), 1186-1199 (2012) PUBMED 22170421 REFERENCE 2 (bases 1 to 443796) AUTHORS Dupont,C., Rusch,D., Yooseph,S., Lombardo,M., Richter,R., Valas,R., Novotny,M., Yee-Greenbaum,J., Selengut,J., Selengut,J., Haft,D., Halpern,A., Lasken,R., Nelson,K., Friedman,R. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (24-FEB-2012) J. Craig Venter Institute, 10355 Science Center Drive, San Diego, CA 92121, USA COMMENT This WGS project has the genome of uncultured SAR86 cluster bacterium SAR86A assembled from seawater from 55 GOS stations collected during the Global Ocean Sampling Expedition. ##Genome-Assembly-Data-START## Assembly Method :: Celera Assembler v. 5.2 Assembly Name :: SAR86A_1.0 Sequencing Technology :: Sanger; 454 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..443796 /organism="SAR86 cluster bacterium SAR86A" /mol_type="genomic DNA" /submitter_seqid="Contig_1" /isolation_source="seawater from 55 GOS stations collected during the Global Ocean Sampling Expedition" /db_xref="taxon:1123866" /environmental_sample /metagenome_source="marine metagenome" /note="genome assembled from metagenomic dataset" gene complement(<1..772) /locus_tag="NT01SARS_0851" CDS complement(<1..772) /locus_tag="NT01SARS_0851" /note="identified by match to protein family HMM PF01541; match to protein family HMM PF02151" /codon_start=1 /transl_table=11 /product="UvrABC system protein C" /protein_id="EJP71052.1" /translation="MSINLKKVPNTPGVYKFFNRKEIIYIGKAKDLRKRVSSYFGKSF KDRKTSQIKFLTDKIETFSTKNEVEALLLEQTLIKENKPKFNILLRDDKTYPYIYFSL DHEFPGIYSKRTKKDVDKKFFGPFVSSEAVKKSIKEIQKIFKLRNCSDSTFANRTRPC IEFQMKRCSAPCVQKINKVDYFEDITSAKLFLSSSDTKTIEKLTKDIEKAALKLEFEK AAELRDRLERINLIKEEQSVVTMAGDVDIFSISSEMLYL" gene complement(793..2112) /gene="pgi" /locus_tag="NT01SARS_0852" CDS complement(793..2112) /gene="pgi" /locus_tag="NT01SARS_0852" /EC_number="5.3.1.9" /note="identified by match to protein family HMM PF00342" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate isomerase" /protein_id="EJP71053.1" /translation="MKREDRSSCVFKNDKVNFRSYINEFTNDLYKAFDLSAKKIGLDS KIDDLFDGKLVNFTEDLAAWHPKYRAQYNPKKSDTFSHKMQQNELTSFYDLCARAKNI VTIGIGGSYEGPKMFLEIMDLTNTVTNFLFITGSDLSEFRMKINNIVPKDTIFIVSSK SFKTLETLTLLKEALKWSGDISKFVAITANKDEAQKHNINCIIEFDQEIGGRYSIWSE ISTLFYWLNQENFNDFMAGGRQADIDLQSDEAYLKFVKNLSYSDIWLHNFNNKNSRAV LSYIWTWRSLPDYIQQLEMESLGKQPCLESDYKKTGQIIFGGYGPTAQHSYFQLLHQG TQDVCVDIVASLEDKNSLNYIQAITQSELLSEGSKDFKDLERINGNVPTNLFLIENSD TYNLGYLLATWEHRTYITATMLGINPFDQFGVTAGKIYTDNYLSDKD" gene complement(2109..2771) /gene="pyrF" /locus_tag="NT01SARS_0853" CDS complement(2109..2771) /gene="pyrF" /locus_tag="NT01SARS_0853" /EC_number="4.1.1.23" /note="identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740" /codon_start=1 /transl_table=11 /product="orotidine 5'-phosphate decarboxylase" /protein_id="EJP71054.1" /translation="MIIVAIDEIDFDRASLIIDNLDSTKCMVKIGSISFNSIGKDIIY YAAEKGFDIFLDLKLHDIPNTVKKTIQGLSLLPITMLTIHTSGGKDMMLSAMEAVKNS KIKVFGVTALTSLSDEDTLSIFKRTTSDQVNAMLDIAEFAGIDGVVCSPHELKLVNSR RSLLAITPGIRIKDLKDDQKRVMTPKEAIDMGSDFIVIGRPITLSSDISKSLNEVYES IQ" gene complement(2768..3061) /locus_tag="NT01SARS_0854" CDS complement(2768..3061) /locus_tag="NT01SARS_0854" /note="identified by match to protein family HMM PF00216" /codon_start=1 /transl_table=11 /product="integration host factor subunit beta" /protein_id="EJP71055.1" /translation="MNKNNKDTFTRSDIEKSLRKEFPDLTKSQISIAIEVILDSIIES VALDEKVEIRGFGTFSKKFIRPRRFTNPKTKKVSYIGETATMHFKPSKSLIKK" gene complement(3054..4361) /locus_tag="NT01SARS_0855" CDS complement(3054..4361) /locus_tag="NT01SARS_0855" /note="identified by match to protein family HMM PF00575" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S1" /protein_id="EJP71056.1" /translation="MAESFSALLDESLNSLDMQPGTIVSGVVLDVDNDWVTVHVGLKS EGIISLDEFRNNDGNFDIKIGDEVEVALEAVEDGYGETRISREKARKISTWKMLEEAL ETGEFVTGKIHNRVKGGFAVEVDVVKAFLPGSLVDVRPVKEAPDIENTVQDFKVIKLD YKRNNVVLSRKAVLEKNNSAVKVELLKNLEEGQIVNGTVKNITDYGAFIDLGGLDGLL HITDISWSRVTNPSEHLTLGQEIEVKVLSFDKEKLRVSLGLKQIHNDPWENVESNYSV GGIYEASVSNITDYGCFAQLEEGIEGLIHLSELDWTSKNIHPSKVVEMDEKIKVMILE IDHDKRRISLGLKQTKSNPWTEFANKYGIGDKVEGNIKSITDFGIFVGLEGDIDGLIH LSDISDDDDPKKTLEQFKKDQKLSCIVFAVDAERERISLKLSE" gene complement(4362..5021) /gene="cmk" /locus_tag="NT01SARS_0856" CDS complement(4362..5021) /gene="cmk" /locus_tag="NT01SARS_0856" /EC_number="2.7.4.14" /note="identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017" /codon_start=1 /transl_table=11 /product="cytidylate kinase" /protein_id="EJP71057.1" /translation="MDRINVITVDGPSASGKGSLARKIAQIFDLAILDSGSLYRLYAF FLEKDIDLRSIPKIIKTNIEFKITQNDLRITYLKDDITDKLRSEKIAVKASELSSLAE VRDALFDIQRAFYTHKGLVADGRDMGTVVFKDAKLKIYLTATVEVRARRRYLELQKRG QEVNMPALIADIEQRDLKDSSRELSPLLPADDAHVIDSSDMSLEDVIKITKNLIKEEY I" gene complement(5014..6321) /gene="aroA" /locus_tag="NT01SARS_0857" CDS complement(5014..6321) /gene="aroA" /locus_tag="NT01SARS_0857" /EC_number="2.5.1.19" /note="identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356" /codon_start=1 /transl_table=11 /product="3-phosphoshikimate 1-carboxyvinyltransferase" /protein_id="EJP71058.1" /translation="MNLTSNPVQEIFGDVKCPGDKSISQRILIIGSLLNCDINVSGFL NAKDPLSTMAALNQIGASINKDGDLVKIKKRSRPFNSPESSIYLGNSGTGIRLMTGLI SGLNLKATLIGDESLSQRPMSRVVNPLVKMGKKISTNDGKTPIKIKGGSINDNFEYQM PIASAQVKSSLILASLSSGNSIHIEEPKVTRDHTEKMIEYCGGKIDVQNSSEGKIITL NKSNLAEISSYEVVGDFSSAAFIIVAALISKKSKVLIKNVGLNATRKGLLEVLLKMNA NIKIVNRRKTCNETCGDLIVESSALEGIEVSDSIIPNIIDEIPILSVAASFAEGETVI KNASELKVKESDRLKATSDGLEAMKIKHDILDDGLIIYGQNNDVPVSKEIDSFGDHRI AMSFLVAGTRSKEGIIVKNCKNIETSFPDFLNTMNALGMKIHG" gene complement(6318..7190) /locus_tag="NT01SARS_0858" CDS complement(6318..7190) /locus_tag="NT01SARS_0858" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02153" /codon_start=1 /transl_table=11 /product="prephenate dehydrogenase" /protein_id="EJP71059.1" /translation="MKNTVESVLIIGLGMIGSSIALASRSKGIKVYGYDLDSPSLKLA LKEKIIDESIENFDEVNNKKFGEKVDLIIVSVPPRKTQEVFNQLQEIWNTSITITDTS SVKNHIKLDGADNIVLSHPIAGSHKSGALAADKDLFFNKKNVICNPFNADEEHLNRLI NYWEDAIQMNTSIMSVSDHDLIFAMTSHLPHLISYALIDSIRLSNADVNENAGGGLKE FLRLSSSNSEMWSDIFTLNRVDLIKALAGFQISINNLLELITEAKEIPDVFNHLSILK EELDEIKSFKEENF" gene complement(7187..8275) /locus_tag="NT01SARS_0859" CDS complement(7187..8275) /locus_tag="NT01SARS_0859" /note="identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807" /codon_start=1 /transl_table=11 /product="P-protein" /protein_id="EJP71060.1" /translation="MSKDNIKKYRDKIDLIDKKILRLIQERASHAVSIGKLKSKISPK SSFYKPDRETKILRNIIKSNEKGILPDTKIRAIYKELISGCLSLEEVLKIAYLGPEGT HSEAAVHNQFGSQVERMPSKTIDDVFFQVIHDEVNIGVVPVENSSEGVINTTLNCLAD SEDINIIGEIYLDIDHQLAAGNKFDLKDAFAIASHPQALGQCSKWIERNIGNIKRLEM PSSAAAADYARENKNILCIVNSMAIEKYKLKLIKQNIQDFSENKTRFLVIGKHQIDAT GKDKTSMLIQTPNTPGSLMGVLKPFDNRKINLSKIETRPSRGNINSHDFFIDCEGHIK DKKLSLAVKEIVETGAIVRNFGSYPEYI" gene complement(8280..9356) /gene="serC" /locus_tag="NT01SARS_0860" CDS complement(8280..9356) /gene="serC" /locus_tag="NT01SARS_0860" /EC_number="2.6.1.52" /note="identified by match to protein family HMM PF00266; match to protein family HMM TIGR01364" /codon_start=1 /transl_table=11 /product="phosphoserine transaminase" /protein_id="EJP71061.1" /translation="MRGWNFSAGPAAIPQEVIKEVQEELLEYNSSGASIIEIGHRTDI YSQVAEESKNDLIEILKIPNSHEVLFLQGGATHQFSMIPLNFRNMGNNADYVVSGTWS KKAADEASKLIDVNISASSENMSFSVFPKCSDWDISKHSSYVHYCPNETIQGIAMHEI PKIDKPLMADMTSVILSQPLDVSKFDLIYAGAQKNIGPAGLTIVIISKELMEKGDSSL PKILRYSEHSKANSMLNTPPTFSWYFAGKVFKWIKRSGGLDYFEALNKKKAEKLYDFI DSSDFYVNNLQKSQRSLMNVTFNLKNDDLNSSFLDESKANSLLNLKGHALVGGMRASI YNAMPEEGVTKLIQFMSEFESKYG" gene complement(9358..11898) /gene="gyrA" /locus_tag="NT01SARS_0861" CDS complement(9358..11898) /gene="gyrA" /locus_tag="NT01SARS_0861" /EC_number="5.99.1.3" /note="identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063" /codon_start=1 /transl_table=11 /product="DNA gyrase, A subunit" /protein_id="EJP71062.1" /translation="MSDFAKEIISVNIEDELKQSYLSYALSVIHGRALPDIRDGLKPV HRRILYAMYDLKNFYNRPYKKSARVVGDVIGKYHPHGDSAVYDAMVRMAQDFSMRYPI VEGQGNFGSIDGDPPAAMRYTEVRMAKIADQMLGDIEKDTVSYSPNYDGSENIPDVLP TKIPNLLINGSSGIAVGMATNIPPHNLTEVLNGCVNLINNPKISIDELIKDISGPDFP TGGTIDGKAGIYEAYKTGRGIIHIRSNTSIEEDKSGKQSLIINEIPFMVNKAKMLEKI AELVKEKKIDGITEIRDESDKDGLRVVIEVRKGDSVDVLENNLFAQTQLEQSFGINFT VLADGQPKEVNLKEMLQAFVKHRKDVIIKRTKYDLNKAKDRGHVVEGLMVAIANIDEI ISIIKKSKDPKKAADSLCKKTWKSGPVEAILKKVGNDTCKPKGISKDLGLKGKKYKLS SDQARAILELRLGRLTGLEQENLSKEFSEIVEKIMSLQKILDDKLTLQELMISELEEI KNNFGDERRTLINDTRRGITNEDLIPEETRVLTVSRSGYAKTQPLDEYREQRRGGQGK AAASVKEEDLIQNLYVLSSHVQILCFTTKGKVFWLKVYEIPVASRTSKGRPLVNMLNL DDDERVSEILPVEEFSDDKFIFMATRKGITKKTNLSLFARKWKSGIKAINLDEDDRLV GTAITDGKKEILLASSAGKLIRFNETKVRAMGRTARGVKGMKLKKDQRLISLNVADPE KTVLCVSENGYGKKTNLDDFPTHNRGGQGVISIKTSERNGMMVAATLVNEEDGIMLIS DKGTMIRTNVSQVPTLSRNTQGVKIITPKENEKLTECVTIPEEEDQED" gene complement(11982..13361) /locus_tag="NT01SARS_0862" CDS complement(11982..13361) /locus_tag="NT01SARS_0862" /note="identified by match to protein family HMM PF02233" /codon_start=1 /transl_table=11 /product="NAD(P) transhydrogenase subunit beta" /protein_id="EJP71063.1" /translation="MSFFSDISAIQNIVYIFSSILFISGIKMLGKEDTAVRGNFLSAS AMFIAVAVTIINVVNPVIVLIGVSIGAVIGSLIALRVKMTSIPEMVALFNGFGGLATF FIAWSEFNAIPDNVFQFIVIMLTTYIGGVTFSGSIIAYGKLSEKLKVKKDSFVTKIFT TFFYASILFLVYSIGFTEIIELPINFYTVLLILTLLGGIGFVIPIGGGDMPVVISLLN SFSGIAAAFAGLLLLNNVLIVAGSLVGASGLILTIIMAKAMNRSIGNILFVGYASSSS SSGSQETGEVKPINVADAYLILENASSVLVIPGYGMAVAQAQHVVRELGELLEENGTE VKYGIHPVAGRMPGHMNVLLAEANVPYDVLVEPDDVNPSMDTVDVAIVIGANDVVNPS ATEEPGSPIYGMPIIEVHNARTVFVLKRSMSAGFAGVQNPLFFKQNTRMLFGDAKESI GGLVSEFKE" gene complement(13635..14753) /gene="pntA" /locus_tag="NT01SARS_0864" CDS complement(13635..14753) /gene="pntA" /locus_tag="NT01SARS_0864" /EC_number="1.6.1.1" /EC_number="1.6.1.2" /note="identified by match to protein family HMM PF01262; match to protein family HMM PF05222" /codon_start=1 /transl_table=11 /product="NAD(P)(+) transhydrogenase (B-specific)" /protein_id="EJP71064.1" /translation="MKIAALKSTNSKDERSPIHPDTISMLLNLGVEIRFEEDIGNGIN VNNKVFEELNLTKSSRKDCIKDSDLIITNQPLEISELSEIKPGASILGMVNPFSNKEL IEGCASRKINLVSMEFIPRITRAQKMDVLSSQANLAGYVAVIESSRHLSTALPMMMTA AGTLKPAKVFVIGVGVAGLQAIATAKRLGARVEAFDTRDVVEEQVQSLGAKFVKIDLG ETGETDQGYAKELTPEQIQKQKELQSKVCERSDIVITTAQLFGRPAPLLIDNNTIDKM SSGSVIFDMAVESGGNVEGSRPDEIIIRNGVKIIGISNLASKVAGHASLALSNNYNNW ITDFFDEEKSKINFDFDDEIIQSSVLVYDGEIKNERFK" gene 14920..15618 /gene="ubiG" /locus_tag="NT01SARS_0865" CDS 14920..15618 /gene="ubiG" /locus_tag="NT01SARS_0865" /EC_number="2.1.1.64" /note="identified by match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01983" /codon_start=1 /transl_table=11 /product="3-demethylubiquinone-9 3-O-methyltransferase" /protein_id="EJP71065.1" /translation="MTENIDHQEVNKFAELADEWWNKNGDFKPLHVINPLRANYIKEK LDLESKSILDVGCGGGLLTEALYDSGANVTGIDAAGPGIEVAKIHASKGNKKINYFEQ TAEELLNKNSELFDVVTCLEVLEHVPDPKSLVKTCIQLLKPNGHLFLSTINRNPRSWI TAIVGAEYIFNLLPKGTHEFDKFIKPSELASYVRSGNANLLETKGMFYNPITHKANLN NDLGVNYLMHAKKI" gene 15602..16252 /locus_tag="NT01SARS_0866" CDS 15602..16252 /locus_tag="NT01SARS_0866" /note="identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="EJP71066.1" /translation="MQKKYKTKLVLFDLDGTLIDTAPDFHNAINKILKKYNRTQISMS SLRPFISEGSSVLIEYAFKNPSQDEDLNKIKHEFLNEYQKNSTNLSKPFDGIPDVINF LKKNNIPYGIVTNKLSLYAKPIVNHFTIFKDSKILVCPDDVKISKPDPEGILLACRKL KVNPKNTVYLGDHPNDLKAANSAGASFIGCLYGYSLGEGISDLSVKLPKEIIQKIS" gene 16257..17006 /locus_tag="NT01SARS_0867" CDS 16257..17006 /locus_tag="NT01SARS_0867" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="EJP71067.1" /translation="MASSNSEKNFLNGKNILVTGASKGIGKYVAKELALLGANIILLA QNEKRLDEIYDDIKENTQSKPLIINCNLEKLDEEKSQEIANVIAKEYNVLDYVIHNAA TVEKMTNIENISLKTWEKILKVNLTSSFLLTKYLIPLMDLAEMPRIIFTSSGVAFKGE AFWGAYSVSKSGVKVLSEILNDEMDHKKNFKVFNFNPKATRTDMRANVFPAENPNQLK EVKELMPYYIWMLSENSNDSSEIHIEYGDEL" gene complement(17009..17620) /locus_tag="NT01SARS_0868" CDS complement(17009..17620) /locus_tag="NT01SARS_0868" /codon_start=1 /transl_table=11 /product="DNA-3-methyladenine glycosylase II" /protein_id="EJP71068.1" /translation="MEHIQAHKALYKKARELGYKSLASHIKKTGPLKITVSKMDFIPH LVKIIVGQQLSVQSAAAIWKRTEIILKNNKYKKPNQNLDIKFKNAGLSRQKISYINGI IFNQDLKKTTRRKLKSLSSEEYFNLLISIKGIGPWSIEMSRIFFIGDPDIFSILDLGL KNAHLKLFSLKNYNQDFYYQFSPYRSYMCLFLWRVLEDENVTI" gene complement(17598..18335) /locus_tag="NT01SARS_0869" CDS complement(17598..18335) /locus_tag="NT01SARS_0869" /note="identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093" /codon_start=1 /transl_table=11 /product="pseudouridine synthase B, ribosomal large subunit" /protein_id="EJP71069.1" /translation="MAERLQKYLAKAGIGSRRFCEELIKSQKVLVNNKIAQIGAKVSL NDLVEYDGKVIEYKEESLRVIMLNKPEKVISSSKKEKNIPIVFDYLPKKDDAKRWISI GRLDVNTSGLMLFTNDGNFANFCMHPSSKIDREYLVRARGIFTNEKRRKLLNGVIIDG VKHVFSDIVEGQKNTTNQWFSVCLTSGKNREVRKLFQSIDMEVSRLKRTRFGPIFLPS TLRKGDCKELGDQEINSLKDYGTYSGT" gene complement(18339..18896) /gene="scpB" /locus_tag="NT01SARS_0870" CDS complement(18339..18896) /gene="scpB" /locus_tag="NT01SARS_0870" /note="identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281" /codon_start=1 /transl_table=11 /product="segregation and condensation protein B" /protein_id="EJP71070.1" /translation="MDNNIINTIEAILLGAGRPVRMSEVRSILASDGLSVELSDIKKS LNALEERYVETSLEIKEVASGYRLQIKDRHSTSLSHLWNDKTPRSSKALMETISIIAY KQPVTRGDIEDIRGVTVSTKIIRSLLERNWIKLSGYREVPGRPALYVTTKDFLDDLNL KSISELPDLPDVSETNDIDLLSQVV" gene complement(18898..19689) /locus_tag="NT01SARS_0871" CDS complement(18898..19689) /locus_tag="NT01SARS_0871" /note="identified by match to protein family HMM PF02616" /codon_start=1 /transl_table=11 /product="ScpA/B protein" /protein_id="EJP71071.1" /translation="MLDNNIAQLELPTYMGEKFEKLPDDLFIPPNALEICLETFSGPL DLLLYLIRKENINILDLDISKITDQYLEYIEMIDAFKFELAADYLVMAATLAEIKSRL MLPKDSFEDEEDDPRANLIKRLQEYQRFKTVSENIAIMPMVDRDIYVASAQHPELKIE TRNELKISIDEVRDTIKEVLNRPNYKTNHLIDFEELSTQERIQILLKILSKRNIITFS KTLQKNEGKKGVVVTLLASLELAKDGYLELIQNKSSELFLKSKGI" gene 19858..20910 /locus_tag="NT01SARS_0872" CDS 19858..20910 /locus_tag="NT01SARS_0872" /EC_number="2.5.1.54" /note="identified by match to protein family HMM PF00793; match to protein family HMM TIGR00034" /codon_start=1 /transl_table=11 /product="3-deoxy-7-phosphoheptulonate synthase" /protein_id="EJP71072.1" /translation="MNYSTDNTRIIDRRKVPAPYELVNKHPIDDQIAKLVYGTRNEVS QILHDKDDRVFVVVGPCSIHDPESALEYAQKLVTESQKYSENLLIIMRVYFEKPRTTV GWKGLINDPDINETFNISKGIEMARKLLIDIAKLGLPAGTEFLDPISPQYVTDVISWG AIGARTAESQIHRELASGLSCPVGIKNGTTGGLKAAIDGIQAANHSHVFLGATKESDI AMLKTAGNNDVHIILRGGKVPNYDKESVENTLTALKEAEVNESIMIDASHGNSQKKFK QQIPVIQSISEQIAEGNENIKGVMIESHLNEGNQKIGDSLNYGQSITDACMGWEDTIS CLNMLNQAVLTRRGSK" gene 20911..21702 /locus_tag="NT01SARS_0873" CDS 20911..21702 /locus_tag="NT01SARS_0873" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71073.1" /translation="MKKIKISFSREVAETLGLESAVILELFNQNLLDNSSYDDLVLSI NENANYLDDGKIESSIDKLLRYDFIKIKNTSNGANFSVKAASKNNNSKRISNDWMPSH ETLEIIGMAKIPSEFLNLKIKEFKIYWIERGQQKNNWNSTFIDFLRREWSKEVNSNKT TPYVLDESWFPDDDVFDILNLSEITKDSALKYLREFILYWKDKGSAFTTWNSKFIDHV KRRYMMDNEIGDNEENKKYSEPGKYTQDFKSRKNDSNWANEINLD" gene 21665..22246 /locus_tag="NT01SARS_0874" CDS 21665..22246 /locus_tag="NT01SARS_0874" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71074.1" /translation="MTAIGQTKSTSTKEEYIESIDALFLKLELAYHYQFYKVFGTDEK LKEGKKLWAVTLKNETPAVILEAVESVISSQSYLPTLTDLMKACKEINKMDGFPTAEE AYIEARKSYQPRAEFEWSHPIVYFAGKKIGWNNLNEKDSTENLKAFKKIFNNLKNDAI NGKKFEIKDNTLLDARKPLNKSLFNKLRKKHKV" gene 22288..23166 /locus_tag="NT01SARS_0875" CDS 22288..23166 /locus_tag="NT01SARS_0875" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="EJP71075.1" /translation="MELTKNIRISLYILIPILLWMISGFFKNNDLQEPIPSSDLFNVQ TVFSVAEEYQPYIKLKASTKSEKRINVKAKTSGEVVMIGAVQGEFIEKDTVLCSLGVV ELNRTEVKAPFSGFIEEIVKPGNFLERGQVCSTIIQLDPISVVAGVPEYDINKVRINQ SVFVELVTGQNIEGKLTFVSKSASPDTRTFSVESQIKNPDGIIKDGLTAEISIEIDKV KAHKISPSILLLNDEGKLGIRIVNNKNIALFVEIEILEDSEEGLWVTGIPDEVEIIIQ GQGFVEDGQEVITNRI" gene 23163..26285 /locus_tag="NT01SARS_0876" CDS 23163..26285 /locus_tag="NT01SARS_0876" /note="identified by match to protein family HMM PF00873" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="EJP71076.1" /translation="MTKIIDFAIKKAKTTLLIAFMVIIAGTYSRQEIPIAASPNVQLP FITVSVFLDGASPSDTSRLIARPLENRLKTITGVESIRSTSYLSYARVFLEFEVGFDI DKALVDVKQGVEEIKYQLPLEAEDPQIQEYSEASFPVMNISIVGGSSVRQKVFYAREL KDMIEPIEQILEVRMTGAPEEVLEGVIDKAKMESYGVTLSDIYYSVSNNNLIIPGGKQ DTGRGSFNIEVPSIIESAKDVYAIPVKVTKDAIVTLGDIATIKRTFKDFTSYARVNGE DAVTLEISLRESANAIDASNAIRDILYDFEKTLPSNLNIVVSNDDTIYANLMVKELNG NIIAAVVLIMVLVIASMGTRVSMLVGLSIPFCFLMTYLILYTLDMEVNFLVMMGLLLG MGMLIDGSIVITEYADKKIAEGLSRVEGYTLASKRMFYPIIASTGTTLAAFIPMMFWP GFTGQFMKYLPITIFFVLSASLFYSLIVIPVLGAYFGQKESALNSDEGHTSVFVRLTE WYGKYIKRFVRNPIETVTAVISLLLVIILSYSISGMGTIYFAIVDPIQANVTIKARGN FSALETKEIIEQVEERFLKVEGIKNVYLRSGSNWWESGSDRVGGGFIETLEPSQTKIS GFEIMDLLKESTNDLPGITVEIEADEGGPSFDSPIEIDIFGDTEEQVNEAVTKIENYM RNNMSGLNNIFSSKAYPSVEWSVEVDKQKAAQLGVSVSDVGALVQMLTSGFKVGEYRP DDAKDEVEIRARFPDSDRTITGIRDLNVVTRQGTVPVSSFVQVVPKENRQTVNRKNGK YFQEIGAGTEDESKVSEKINELSFWLESIDLGPGISYKFSGMAEETEDVNRFIVIAGI TAIFMMLLMLITQFNSFYQSFIILSAVTISFVGVLLGLLITGKSFSTTMTGISIVTLA GIVVNNNIVLIDTFNKLREEAPQVEQAVHIINACKQRLRPIILTSLTTIFGLLPLAMG VSLDIISRDIVIGSRVVDWWSNLAVSIVWGLGFSTFMTLILTPAVLSLPYALRNEYKK FFKIEANDLQ" gene 26289..26510 /gene="xseB" /locus_tag="NT01SARS_0877" CDS 26289..26510 /gene="xseB" /locus_tag="NT01SARS_0877" /EC_number="3.1.11.6" /note="identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII, small subunit" /protein_id="EJP71077.1" /translation="MANSDKKIDFEASLKELESIVTKLEDENISLEDSVKSFEEGVNL VKECQKQLQKAELKIKKLLDDGSSTEVNN" gene 26520..27386 /locus_tag="NT01SARS_0878" CDS 26520..27386 /locus_tag="NT01SARS_0878" /note="identified by match to protein family HMM PF00348" /codon_start=1 /transl_table=11 /product="geranylgeranyl pyrophosphate ligase, ic" /protein_id="EJP71078.1" /translation="MLNHFLSQVRDQVSKNIEFVIGDSNHIEKAMNYSTLSESKMIRA ALIFASADTHNFLKNESKVTLATSVELIHTYSLIHDDLPAMDNDDFRRGKKSNHIVFG EADAILAGDALQALAYEIIADDNNLSDESKIRAIKLLSNACGKNGMVLGQHLDIKSES KDISQMEIENIHSLKTGKLIECAVMLGQLENISSNEKIFKSFGRNIGLAFQIIDDYLE ATSSSKKLGKDINSDEKNKKSTYINIVGIDKSLERSEELAKSAIDEINDEKISNSEML IELARYITKREK" gene 27388..29253 /gene="dxs" /locus_tag="NT01SARS_0880" CDS 27388..29253 /gene="dxs" /locus_tag="NT01SARS_0880" /EC_number="2.2.1.7" /note="identified by match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00204" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose-5-phosphate synthase" /protein_id="EJP71079.1" /translation="MKIFKEIPSQKPKTPLLDKVNDPSDIRSFSINELRILSDELREY LLYSVGQSGGHLGGGLGVVELTVVLHYLLNTPFDNLVWDVGHQAYPHKILTGRKNQIH TIRKKGGLAPFPSISESKYDSFGVGHSSTSISALLGMAVASQAESEKKNVAVIGDGAM TAGMAFEALSHTGHIKPNVLIILNDNDMSISENVGGLSNYFSRIWASKTYKGIKKSGA SFLKPLPQAYHLARKVETQMKAMVAPGTIFEELGLNYIGPIDGHNIKELHDVISNLME FEGPQFLHVITKKGAGLDPAEADRIGFHAIGKINSIKQKSSKAKKYQDIFSDWINDMA AKDEDLIAITPAMREGSGLVTFSKNYPDRYYDVAIAEQHAVTFGAGLAIGGKKPVVAI YSTFLQRAYDQLIHDVAVQNLNVTFALDRSGLVGEDGPTHSGNYDIAYLRCIPNMIIC TPADENETRLMLSTGFNYKGPASIRYPRGVGPNVKVDEKLDTVEIGKARVINEAGKDK VILNFGSLLHIAREISEKFKFTLIDMRFVKPLDEQILNQYLKKADLFISIEDGSIMGG AGSAVQEFCSKNNINIESELFGIPDEFIEHASREEMLNDAGLSVDKISSRLKELI" gene complement(29231..29716) /gene="pgpA" /locus_tag="NT01SARS_0879" CDS complement(29231..29716) /gene="pgpA" /locus_tag="NT01SARS_0879" /EC_number="3.1.3.27" /note="identified by match to protein family HMM PF04608" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase A" /protein_id="EJP71080.1" /translation="MDDFPNLKNPFHFLATLGGIGNIPLAPGTFGSIFSWLIFIFLSH FVNMLYVTFIGIFLSIWICEKASKNLIHKDHRSIVIDELIGIWIALLPVLYLADTQKE RIVYAIAALLFFRLFDIFKPFPVSYFDENFKNGTGIVIDDLIAGVMAIIPSYIILTLL T" gene complement(29709..30782) /locus_tag="NT01SARS_0881" CDS complement(29709..30782) /locus_tag="NT01SARS_0881" /note="identified by match to protein family HMM PF01266" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate dehydrogenase" /protein_id="EJP71081.1" /translation="MAGILSNKKIGIIGGGITGVVTAIFLARAGNKVTIFDKNKLLSE TSSSTTKLLHGGIRYLENLQIKEVRNGLNDRHWWLKNFPNNTSAIEIFIPFKNIFSIR FIKYFIGIKLYEFLSFKKKLGSGKIIFGSRNVMKNQEMNFLNFLSFIDGFMDDELLSE KLRDELSQLDVEIYENYEVNDFNLSGAVNNFNFDNVILASGPWNKILLDKNNLKTDKD IDLIKGSHLVIDRKINRAYMFEAICKKRYIFALPYKNNTLLGTTEKRTDSPDTPIIDE DEKDYLIQSYNSFFSKQISSENILYNYSGVRPLIKSNKKNFHNSSRDFYIDQNEKLIC VFGGKWTTAPSIAKKIVTIINNG" gene complement(30760..31653) /gene="thiL" /locus_tag="NT01SARS_0882" CDS complement(30760..31653) /gene="thiL" /locus_tag="NT01SARS_0882" /EC_number="2.7.4.16" /note="identified by match to protein family HMM TIGR01379" /codon_start=1 /transl_table=11 /product="thiamine-phosphate kinase" /protein_id="EJP71082.1" /translation="MISETDILKTFQHLVKRSDADESIIIGSGDDAAVINTKDKCLVH SVDISKINSHFPRNFLPNDIAYRSIAIALSDLAAMGAYPSFITIGLTCDEKKIEWYER FSKGVEESMNEFNFSLVGGDITYGELSVCVNVFGYLFDKPLLRSGAKPGDKIFITGQL GHGQKGLEDFKRKNDSISLEKFKKPTPQFKKSKHISSFASSCVDISDGLIKDLTSICS MSQVGAKIIYEDIPKLRGIDDLSYGDDFELCFTTSDKNIKQLNKDDYFCIGEITSDKE ITLLNANNEVKLEKDGWDSFK" gene complement(31650..32837) /locus_tag="NT01SARS_0883" CDS complement(31650..32837) /locus_tag="NT01SARS_0883" /note="identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930" /codon_start=1 /transl_table=11 /product="3-ketoacyl-CoA thiolase A, peroxisomal" /protein_id="EJP71083.1" /translation="MRNVVIVDSVRTGLAKSHRGGFNMTRPDEMLAHIIDAMLDRNPD MPPEAVEDIIMGCGNPEGAQGHNIGRNAAVLSKLPMTTGGTTVNRYCSSGMQSISMAA SQIMAGCYDTVIAGGAETISMMNMNMDNFVNERLAEEVPGIYFPMGMTAEVVAKRYDV SREAQDEYAFESQMRTAAAQQSGAYDDEIIPMETKMLLTNKETGDSKEVEYTVDKDEC NRPETTLEGLASLKPVFDPENGSVTAGNSSQLSDGASVTLVMSEDKAKELGLKPLAYF RGFTTMGCEPDEMGIGPVYSVPKLLKNYNMSVEDIDIWELNEAFAVQVVYCRDKLGIP MDKLNLDGGSISIGHPFGMTGSRQVGHIARQLNNMDKQFGVVTMCVGGGMGASGLFER YPS" gene complement(32860..33180) /locus_tag="NT01SARS_0884" CDS complement(32860..33180) /locus_tag="NT01SARS_0884" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71084.1" /translation="MQLMNTDKIQKYLLKLKDSFLDETEENRRMLDIYVNYIDGKASN KDIEEANYQLKQVLRSLGLGILVVLPFSPISIPYVLKKAKEFDIELIPDWYKALSKDK DELE" gene 33204..33857 /gene="nth" /locus_tag="NT01SARS_0885" CDS 33204..33857 /gene="nth" /locus_tag="NT01SARS_0885" /EC_number="4.2.99.18" /note="identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083" /codon_start=1 /transl_table=11 /product="endonuclease III" /protein_id="EJP71085.1" /translation="MKKSERAFIIKRILDKKYPKTPIPLDHFDNYSLLIAVLLSAQCT DERVNQITPILFSKASTPFEMSKLTEKQIYNIIKPCGLGPKKSKAIKELSKIIIDKHN GQIPNNFSDLEKLPGVGHKTASVVMSQGFGVPAFAVDTHIHRLAQRWGLTNGKSVKKT EEDLKKIFPKSSWNKLHLQIIFWGREYCQARECYGKECDICKTCYPNRVKPFIHKKP" gene 33894..35174 /gene="glyA" /locus_tag="NT01SARS_0886" CDS 33894..35174 /gene="glyA" /locus_tag="NT01SARS_0886" /EC_number="2.1.2.1" /note="identified by match to protein family HMM PF00464" /codon_start=1 /transl_table=11 /product="glycine hydroxymethyltransferase" /protein_id="EJP71086.1" /translation="MKSSKSDNIFSNISSIKEYDRDLWTSFENEAQRQEDHIELIASE NYASKRILEAQGSLLTNKYAEGYPSKRYYGGCEFVDVAENLAIERAKQLFDADYANVQ PHSGSSANAAAFLALLEPNDTILGMSLDHGGHLTHGSKVNFSGRNYKSIQYGLHPETN DINYDEVLSLAKEHKPKLIIAGFSAFSGIVDWKKFREIADEVGAYFLVDMAHVSGLVA AKLYPSPVPYADVVTSTTHKTLRGPRSGIILAKENEEIEKKLNSAVFPGSQGGPLMHV IAAKALCFKEALEPDFKNYIQDVMDNAKLMATTIMSRDINVVSNGTENHIVLVDLRSK NITGKDLEKVLGSVNITVNKNSVPNDTASPFITSGIRIGTPAITTRGFGKKEVVQVAN WIADIIENIDDELVHEKVKNEVSSLTSEYPVYRL" gene 35175..35654 /gene="nrdR" /locus_tag="NT01SARS_0887" CDS 35175..35654 /gene="nrdR" /locus_tag="NT01SARS_0887" /note="identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244" /codon_start=1 /transl_table=11 /product="transcriptional regulator NrdR" /protein_id="EJP71087.1" /translation="MYCPFCQAEDTKVIDSRLVADGSQIRRRRECEVCHSRFTTFETI DLALPRVIKSNGERQPFNGSKLKAGMLRALEKRPLSTEEIDTIFGKILKEIRTKGVRE IKSIEIGKIMMNALKEVDTVAYVRFASVYRDFQDIADFSEEINSLNKEKPSNKKSKK" gene 35651..36670 /gene="ribD" /locus_tag="NT01SARS_0888" CDS 35651..36670 /gene="ribD" /locus_tag="NT01SARS_0888" /EC_number="3.5.4.26" /EC_number="1.1.1.193" /note="identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibD" /protein_id="EJP71088.1" /translation="MNYEKLMLRAISNANFYKFTAKPNPVVGAILVKGEEIISEGYHE KFGQNHAEINAINLAKKKINKNFNDFSELVLICTLEPCSHIGKTGSCAHAIVDSGIKK VIIGSIDPNPLVSGKGVEILEDAGIKVEKNLCAELVRKQNKYFFFKQTFNRPYLTVKI ASSSDGKSHYKDSERTYITSDASRNDVQILRAEHDGILTGGNTLRNDNPHMNARVDFD TNQPQKILLSNQDINEDEYKFFKNNSADIHSNLSLDEVIEFYKNSDLCSILIEAGPDL VNAFLKTGKVDEIVIYTSNKVLGDEGVDWFKEKNAIENYGFKLESSYKIGGDVKETFI KNEKK" gene 36657..37736 /locus_tag="NT01SARS_0889" CDS 36657..37736 /locus_tag="NT01SARS_0889" /note="identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506" /codon_start=1 /transl_table=11 /product="3,4-dihydroxy-2-butanone-4-phosphate synthase" /protein_id="EJP71089.1" /translation="MKKSSITEIIDDIRDGKMVIILDDESRENEGDLVCAAEAVTPEI INFMASKGKGLICLPMSKRLCDKFDLQMMTNKNRAANKTAFTVSIEAAEGITTGISAA DRAHTIKTAVRKDSKASDIVQPGHIFPLKAMKGGVLSRAGHTEAACDLAKLAGFQSAG VICEIMNDDGTMARRDDLLKFGNENSIKVGTIADLIDYRLSMDATIESVLDKDIENEF GKFKLNVWRDKIYDEYHFSLSMGNINEVESPLVRVQTQSILQDLLGIDELGKNWSIRN SLKKISEEGTGLFVLINHRDAKSYWLNKLEEKQIEPKSNRRVIGVGSQILRALNLKKI TVLGTPTKYNAVSGFDIEITGFKNE" gene 37729..38133 /locus_tag="NT01SARS_0890" CDS 37729..38133 /locus_tag="NT01SARS_0890" /note="identified by match to protein family HMM PF00885" /codon_start=1 /transl_table=11 /product="6,7-dimethyl-8-ribityllumazine synthase" /protein_id="EJP71090.1" /translation="MNKILIVHTSWYEEEITKMIDISVEILEQKFTCVKAKAPGAIEL AALAKSKMHKENYVGVICHGIVIRGETSHYDLVTNETFRSIGSLSENFFDIAVINNVL CVENTTQLLERLEKNTRNNTNALISLINEKSC" gene 38117..38530 /locus_tag="NT01SARS_0891" CDS 38117..38530 /locus_tag="NT01SARS_0891" /note="identified by match to protein family HMM PF01029" /codon_start=1 /transl_table=11 /product="N utilization substance protein B-like protein" /protein_id="EJP71091.1" /translation="MKNLANFKTAVRSREYLIQAIFQMLFDNQVASKIIVQFKEEHKS KKVDFELFSNSLLSIEENIKNIESIISKLDIKDSSIELIDKSILCFAINEMLFGELDK PVVIDEALRLSKKFSSPDSYKFINVSLDKFLKSII" gene complement(38532..39749) /gene="purA" /locus_tag="NT01SARS_0892" CDS complement(38532..39749) /gene="purA" /locus_tag="NT01SARS_0892" /EC_number="6.3.4.4" /note="identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184" /codon_start=1 /transl_table=11 /product="adenylosuccinate synthase" /protein_id="EJP71092.1" /translation="MSNNTLILGLQWGDEGKGKIVDNLSESFDVVCRFQGGHNAGHTI KVDGEQTVLHLIPSGILHDNANCLIGNGVVLALDALNDEINKLKNKGISFNKRFFVSS ACSLILPTHIAIDKVRDKKESIGTTGRGIGPAYEDKVGRRAIRFGDLGDEKLLRDKID SLVNFHNRLLVDLYKTDPYKPDDVFEEVYKFKSLYEDYCVDSQNLMYEFIKEKKSILF EGAQGTLLDIDHGTYPYVTSSNTTAGGVSTGLGIGPKFIDRIIGITKAYTTRVGEGPF ITELFDENGTHIAKKGNEFGATTGRARRCGWLDLVALKKAVFTNSVTDLCITKLDVMD ELKEINVCIDYSDSQPIYKTFDGWLSSTEGITNYIDLPNEAKEYIEFIENFTECKASI ISTGPSRDQTISR" gene complement(39758..40627) /gene="hflC" /locus_tag="NT01SARS_0893" CDS complement(39758..40627) /gene="hflC" /locus_tag="NT01SARS_0893" /note="identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932" /codon_start=1 /transl_table=11 /product="HflC protein" /protein_id="EJP71093.1" /translation="MNKNTYSILFGALLFGLLINSIFIVNEKEKAIVFQFGEAVRPDI PVGFHFKLPIIQTVKKYDSRIQTLDEEPDRILTVESKYLLVDSFIKYRIVDVLTFYKA NNGSFNSLNSLLGQRSEFVLKNNFGKRTVKEVVSGERDELMSIMLSSLNDSVVDLGVE IIDFRVKRIDLPSNLSNSVYERMRTERQRLAEELRSEGKEIAREITAEADKEKVVILA EAYKLAEQLRGQGDAEAAGIYAQSFSQDPEFYEFTRSMKAYVETFENKSDVMLIDSDS EFFKYLNDKKDEK" gene complement(40620..41666) /gene="hflK" /locus_tag="NT01SARS_0894" CDS complement(40620..41666) /gene="hflK" /locus_tag="NT01SARS_0894" /note="identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933" /codon_start=1 /transl_table=11 /product="HflK protein" /protein_id="EJP71094.1" /translation="MNWDNKENDPWGNKNDAPDFDELMKKFSSILGGKKSSTNGSGSG DGGSGFNFPSSRMLMYALFAFSIVYASQCIYQLDASERAVILRLGKFYEEQEEGLNFR LAGIDERYIENVSLTRRYTQTNSMLTKDENIVDVTVSAQYRIANLKDFVLNVKDPEGS LRNAIESALRHVVGDNTLDQTLTVGRENIAQEVQSRLQSYLDIYQTGLIVQQVNIEKT DPPAAVKNAFDDVVAAREDKERLQNEAERYALSIVPEARGQAQARIKEAEAYKEAVVA EAEGEVERFNQLLAEYLKAPDVTRDRLYLDALQSVLSNSTKVMVDVEGGNNLLYLPLD KIMEENKKKGDDDE" gene complement(41725..42633) /gene="miaA" /locus_tag="NT01SARS_0895" CDS complement(41725..42633) /gene="miaA" /locus_tag="NT01SARS_0895" /EC_number="2.5.1.75" /note="identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174" /codon_start=1 /transl_table=11 /product="tRNA dimethylallyltransferase" /protein_id="EJP71095.1" /translation="MFGPTAAGKTNLAIKTYDYLPIEIISVDSVMVYKKCDIGSAKPS KEILKQYPHHLVDVESLNNIFSVADFLNLAKALIEETHDKNKIPFFVGGSMMYFRSLF YGIHDLPGRDLEYRKELNEIKQNNSTSHLYKMLEGIDPNYAVDIDHNDEIRIIRALEI YKNSGKKLSEIFSNNPTNGIREKYEVIQFGIKTDREILHERIKARLHEMIDNGLIEET ENILNDFNIAEDHPIRKAVNYKQSIEYINGKYPKDILFDKALYATRQLAKRQVTWMKS WDNYINVDIEDIKTFTNKVKNSLSSL" gene complement(42666..43004) /locus_tag="NT01SARS_0896" CDS complement(42666..43004) /locus_tag="NT01SARS_0896" /note="identified by match to protein family HMM PF00543" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="EJP71096.1" /translation="MKLITAIIKPFKVEEVRSSLDEIGVSGMTMTEVKGFGRQKGHTE LYRGAEYTIDFLPKIKIEIAVKDDLVDQVKNAIIKSAGSGKIGDGKIFVSPIDEVIRI RTGETNEDAL" gene complement(43006..44244) /locus_tag="NT01SARS_0897" CDS complement(43006..44244) /locus_tag="NT01SARS_0897" /note="identified by match to protein family HMM PF04413" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonic-acid transferase" /protein_id="EJP71097.1" /translation="MKFFLYNFILILLLPLIISRLIIRSLKDRDYIKNISNRFGIYEN ETESNPVWFHAVSLGEVISSETLIKKILIDNKVVLSVSTPTGYRQAEKIFGNSLQIVY APWDIYFFVNNFLKKFNPKALIIFETEIWPSMIKASSAKKIPIFLTNARLSQESNSKY SNIKFFVKEVVELFTLVLAQTNKHYDRFVSLGIDKDKIKIVGSIKFDKDNKIEKKESS VRDPNLIIATSTHSGEEEIISKVFKKLAFIDKSLKFILVPRHPERADSIGTIFKNEGT DCMILEDIPSSFDSNKILILKGIGFLDKLYKSASLAFVGGSMLKDYGGHNVIEASANG CPFIVGPYMKNFEDVISLFLEEEACIQIENSDELYDSCKKLIFDEELRQNMVDNAYKV VENNRGSMEKQYNYLKEYLN" gene 44291..45163 /locus_tag="NT01SARS_0898" CDS 44291..45163 /locus_tag="NT01SARS_0898" /note="identified by match to protein family HMM PF03279" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis lauroyl acyltransferase" /protein_id="EJP71098.1" /translation="MNNLILKISVYLWRTTLIFPWRIQIIFGKLLGNILLIIPFKRNK FSKANIELCFPELSESKKNQILKRNIILSGSVLFNTGISWFWSDERINKNIEYEICGL KEIIEDQKNNKSILLFFKHSLHLELDARILGMNCDIYGIEREHNSKDFNKLQMKGRLK SMKGLTDRNNTFTFIKWLKTGKTVLYAPDQDYGSKRSKEVDFFGHSAATVIAPYKLIQ STRCKTYFLDSYFTENKLNLVIEKVSFNKNSEQDFLQEMNNYIEKKIREYPHEYLWQH RRFKSTLGKDKLYK" gene 45160..45762 /locus_tag="NT01SARS_0900" CDS 45160..45762 /locus_tag="NT01SARS_0900" /codon_start=1 /transl_table=11 /product="secreted protein" /protein_id="EJP71099.1" /translation="MNLEALEEVKGFMPYHEGEALSKWAEEFSNKGPIMEIGTYCGKS SLFLSYGANKNNQLVFTVDHHNGSEEHQIDEEYFDNEIYDTETNSVNSFPLFVKNINR FRASNVVPIVRSSVDAAKTWNAYLGMVFIDGGHALETAMQDFNSWNEKIISGGALVIH DIFENPEDGGQAPFMVYQHALKNGFSDFERVDTIICLKKS" gene complement(45757..46794) /locus_tag="NT01SARS_0899" CDS complement(45757..46794) /locus_tag="NT01SARS_0899" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71100.1" /translation="MHLPTQKFSNEISIDKDLFLDIANFIRQNQLVSGAIPSNEDLSH DPWDHIESIMGLNFLEDKNSSEKAFNWLKENQNDDGSWYAKYDDITPIEYHKPTHFAP YIAVAALHYYKIFKDKEKIKELWPTIQSSINFSLNLQNANGTIPWSIDKKGKIENDFL LTGSSSILKSIECGIALSKTLNFQENKNWLTAYNKLSSAIRNPKGLFDITIDRSRFSM DSYYPILSGCLTESEKEVYIEKIFKEFYVEGLGVKCVREEPWITVAETCEFIIALTMS DNISTAKKILIEVLNISDKKNIPFMGWQFEENFFWPNEKPTWTSAALIIAADSIYDFS DGSDIFTRNQL" gene complement(46796..47497) /locus_tag="NT01SARS_0901" CDS complement(46796..47497) /locus_tag="NT01SARS_0901" /note="identified by match to protein family HMM PF08241; match to protein family HMM PF08242" /codon_start=1 /transl_table=11 /product="cyclopropane-fatty-acyl-phospholipid synthase" /protein_id="EJP71101.1" /translation="MLTFNFTKYEIASEGLMLDVGCGEGRHIFGVMQHYPNMKCIGID PHDDSLKKAEEGYEYFQSISNAGAEFMEASAYSLPFPDETFDLVVCSEVLEHLHNYMD AVDEIKRVLKKGGKFYASVPASWPERICWSLSKEYQNQPGGHLRIFNQNDLVNEIKER GFIFLSSEKFHSIHSPYWWLRCFFWNTQDKNLLVKIYKKILERHILKKPLLLDCIDKI LNPIMGKSFSMYFEK" gene complement(47484..48737) /locus_tag="NT01SARS_0902" CDS complement(47484..48737) /locus_tag="NT01SARS_0902" /note="identified by match to protein family HMM PF00534" /codon_start=1 /transl_table=11 /product="glycosyltransferase, family 1" /protein_id="EJP71102.1" /translation="MQKLRIAILSYRSAKYGGGQGVYVRDISFALSLLGHDVDVISGP PYPNLHDNVKLIKLPGLDLFESFVFKDRLRKFFKKKNKNKDDFYEFFIALIGGFPEPK TFGNRVDKYLRHNVDYDVIIDNQSLSYGLLNIQKRFPLIEIIHHPITFDYKFELAASN KIRYKISRHLWYGFLKMQTKVAPKITTIITPSKSSKNGIIKEFKCNKNTISVINNGLD TNEFSPIPVSKRNKNRLITTASADVPLKGLDYSLKAIKILKEKYPDIHLIVIGDVKKG GHTERLIEELGIKENIFFKKNISKTKICELYSTSSIAIVSSLYEGFGYPVIEAMSCEV PLIATDVSSIPELVGDFAKLIKPKDSKQISDAVIEILSDYENYKVIAENGRQHIIDKF NWPKITRQYEEVILRTIQNYKNVNF" gene complement(48744..49664) /gene="ilvE" /locus_tag="NT01SARS_0903" CDS complement(48744..49664) /gene="ilvE" /locus_tag="NT01SARS_0903" /EC_number="2.6.1.42" /note="identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122" /codon_start=1 /transl_table=11 /product="branched-chain-amino-acid transaminase" /protein_id="EJP71103.1" /translation="MFINTENKLIWKNGSFQKWDDTNVHILSHTLHYGTGVFEGVRAY DTLNGPAIFRLKEHTNRLFDAAKKINIEVPFELDEIIHAQCETLNKNQLNAGYIRPII YLGNEGLGLRAKELSVNVAIAAWEWPSYMDPEAKKKGISIAKSSYIQYENPLHSGNKI IGTYFQNTMALHEAIDKGADEALMMDANGFISEGSGENIFIVKDFKLMTPTKDHCLNG ITRQSVIQIAKDLNYDVIEKNLTFDDLISADEAFFTGTAVEITPISKVDDVKIGHDGA GEITKVLQNKFDEVISGKDLNYQSWLTYTK" gene 49732..51096 /locus_tag="NT01SARS_0904" CDS 49732..51096 /locus_tag="NT01SARS_0904" /note="identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880" /codon_start=1 /transl_table=11 /product="phosphomannomutase/phosphoglucomutase" /protein_id="EJP71104.1" /translation="MEITKSIFREYDIRGEYPNQINEEVVRKIGNAIAGKCINLNIKE ICVGRDGRNSGKSLLEAMIGGLSESGIEVINIDLATSPLLYYAAKKNKYKSGIMITGS HNPKNHNGIKLVIDDKPVSGNEILDLLNKDQKFSESVGSIKSLDVKDSYIEEVSQSLK INKKLKIVIDCGNGAAGFIAPDLYKNLGCEVIELYSEVDGNFPNHHPDPGKVENLKDL IQAVKTHGADLGLAFDGDGDRVGMVTNNGEIVFPDKILMMLSKDVLHSQKGSIIFDVK CSNALSQIIKENGGSPIMSPTGHFHIKNGIKKHNPLLAGEMSGHIFFNDKWYGFDDGH YSGARIIEMLSKNEKSIAEICNELPMLFSTPELNINVTDDNKFKIIKEFADNCRLEGE KNTIDGLRLDFEDGWGLIRASNTTPKLVLRFEGRSEEILNRIQNDFLNELTRICPDID INLS" gene 51099..51668 /locus_tag="NT01SARS_0906" CDS 51099..51668 /locus_tag="NT01SARS_0906" /note="identified by match to protein family HMM PF00440" /codon_start=1 /transl_table=11 /product="HTH-type protein SlmA" /protein_id="EJP71105.1" /translation="MKKDRKNIILESLASMLEERNMSKVTTALLAEKSGITEAALYRH FPSKRAIYAELFSFCDNAIFSKCNELKKEKLSSKDKIKNSFLFFMIFVEKNKGFARLL SREALSSDEQNVSDNVNQFYERLELFFRQVLKEDSDNLVTQPGVSAQLIVTALEGNVS RYIRSKFKDAPSSYIENIWQLLAITIFKN" gene complement(51658..54099) /locus_tag="NT01SARS_0905" CDS complement(51658..54099) /locus_tag="NT01SARS_0905" /note="identified by match to protein family HMM PF00905; match to protein family HMM PF00912" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1A" /protein_id="EJP71106.1" /translation="MQKIVKYSFYFGIFICLFAIILILATNAYLKPSLPKIKLVDEAE LQMPLKVYTKDGILIGEFGEIKRRSITFTEIPENIKNAFLAAEDDNFFNHQGISYTGL IRSFIRCLRPSGCEGGGGTITMQVVRGYLLTREQTVIRKIKEIFLALELEGNLEKEEI FELYVNRIFLGNRSYGIEAAANTYFDKNLKELSISESATIAALAQLPSRVNPVKDPRR TKLRRNWILSRMLLLGYIDEIQYKEAVSQDLKIANNINLYDVEANYISELARQDIIKR YGLRAYKEGWSVFTTINSNSQLAAKSSMMEQLFDYDKRHGWRNPSNFAYLFNETQKIS LENLDLNFLIKDKYFDEIDLDTNDISNQISSTFNSFPYFKNHKTALVIKVEQNRFFSI DQNFEMIEVNWSNEYSWARSQISIDELGPRPEDFKDILNFGDLVYLKNNIDFYTLDQI PEAESSIISVNPNTGEVVAYHGGKNFNSSNFDRVRLSYPQSGSSFKPFIYASGLANGY NLSTLINDAPISFEDENLESIWRPQNYTGKFYGPISLREALTKSVNIVSIKLLRELGI EKSKDYLENFGYTKSRLPNDLSLALGSGNFSPAEMVRAFSVIASNGFIPDIHYIDKII DRDGNIIFSHDDYLVKVNNQNISAFPWLDTLEMNVKYPYYILEPLNKKEKVIDQRISY LIKDTLEGFMRNGVAGRKSAFLQRNDIGGKTGTTNDSVSTWFSGFHEDLVTTVWVGTD DFTSLGKDEYGSTIALPIWLNYMENELPSLDVSKKVIPEDISFAKVNKTTGKVDTEDD DNVYFELFLNENINF" gene 54198..54701 /gene="aroK" /locus_tag="NT01SARS_0907" CDS 54198..54701 /gene="aroK" /locus_tag="NT01SARS_0907" /EC_number="2.7.1.71" /note="identified by match to protein family HMM PF01202" /codon_start=1 /transl_table=11 /product="shikimate kinase" /protein_id="EJP71107.1" /translation="MNIFIVGPMGSGKSTVGKIISDELFMNFFDTDEEIETRTGASID WIFDLEGEEGFRKRESAILTEMVEKNSIVLSTGGGIILSEENRELLSSRGTVFYLATP IYVQIERTAKDKDRPLLKDGDPEEILTKLHNNRQNLYESVADHVVDTENKSSQEVASE IVKLIKS" gene 54705..55769 /gene="aroB" /locus_tag="NT01SARS_0909" CDS 54705..55769 /gene="aroB" /locus_tag="NT01SARS_0909" /EC_number="4.2.3.4" /note="identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357" /codon_start=1 /transl_table=11 /product="3-dehydroquinate synthase" /protein_id="EJP71108.1" /translation="MIELSAGKANTKYKIYISKTALTKKVLNQNIDKDKKILIITDSG IPKKYIKELKKQLINKSVYVHSIDSGEKSKSFRTYQQIINKLIDLEFSRSDLIIAFGG GVVGDISGFCASSFLRGIDYIQIPTTLLAQVDSSVGGKTAINVPQGKNLVGAFYNPRV VLISTVYLKTLSEREYKSGLGEVVKYSLIGNKRLKKLLEENAEKVINRDDKILIKIIE ESIKTKSKIVTKDEKESGIRAILNFGHTFGHAIEAFNKYKNLSHGAAITLGMIIASKI SYYEGHIKNHQLDNIINMIDSLNLDTDYSKYNYSDLIKYVKSDKKISKGKLNLVLINK QLKAFKTAKFDKKNVMRVFS" gene complement(55766..60199) /locus_tag="NT01SARS_0908" CDS complement(55766..60199) /locus_tag="NT01SARS_0908" /note="identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898" /codon_start=1 /transl_table=11 /product="glutamate synthase [NADPH], large subunit" /protein_id="EJP71109.1" /translation="MSKLISKNDFRDNCGFGLIAHINGKKSHDIVIKSINALESMTHR GAIGADGKTGDGCGILVDLDKDFFEEALLKEQSIKIKDEFAIGQIFLDHEIDLVLPKI KKILKKESLSLTALRKVPLNKKILGEIALDCLPNIYQLFIQSNDATFYEEQFETNLYQ ARKLIEEIYSDDEKLYFCSLSSKTIVYKGLMLPNAIKEFYLDLKSPNFRSSICVFHQR FSTNTHPRWHLAQPFRLLAHNGEINAIRGNRNWVKARSSKFKSPRIPKIQNFKELVNE KGSDSSALDNMIEILINGGVKLFRAIRMVMPPAWQNSYLLDPDVRSFHEYNSMHMEPW DGPAGIVMTDGKWAVCMLDRNGLRPARYQIDKDNFITIASETGVNPIKNENILKKGRV TPGGILAINTFTGDIYNQDQIDDDLKSKLPYREWLKEQTVYIESSLDKYEGPGLKKID SHDFNISSKLFLLHKEERTSVIKPLAIESNEGTGSMGDDTALAVMSKMHRQIYDYFRQ QFAQVTNPPIDSLRESSVMSLETCYGPELNVFDETPDHAKRLVTTSPILSFKKLQSII NNKHFESIDINLDYSSNINLKQALEDLQEKVIKNVQQGKVIIHLIEKLPRKNKLPINA LLAVGCVHQKLVALGLRSDANLVVTTSSARDTHQLACLIGFGATAVYPTLAYQTILDL SDRNELKGSPHENCARYRKGINKGILKIISKMGISSISSYRGSQLFEIVGLSDEVVDL CFTNTTSRIGGKSFKDIDNELRMLDEYSRSNLSEISVGGLLKYVHGGEYHTYNPEIVK KLQEAVSTGSQSVYQEYADLVDKRPPAMLRDILGIKFPKKTTKLTKVESSKKILKRFD SAGMSLGALSPKAHETLAEAMNSLGSRSNSGEGGEAKERYGTSKMSKIKQIASGRFGV TPHYLVNAEVLQIKIAQGAKPGEGGQLPGGKVDKLIAELRYSTPGVTLISPPPHHDIY SIEDLAQLIFDLKQVNSKALVSVKLVSEPGVGTIASGVAKAYADLITISGHDGGTGAS PLTSIRYAGSPWELGLAEAHQSLRDSGLRHKIRLQADGGMKTGLDVIKAAMLGAESFG FGTGPMIAMGCKYLRICHLNNCATGVATQRKDLINQHFIGEKEKVMNYFNFIADDVRK YLSLLGVKNLEEIIGQTKYLYQLKDIESYLKSINLSQILFSDKDIDEAHFCKVSRNDP WDKAELSKKIFAQISKNIEKDIGGTFKYQIQNTDRSVGANISGYIAEKYGEMGLKKII ELKFKGSAGQSFGCWNANGLNLILDGDANDYVGKGMNGGKIVVKNNADFVSNNEKTIL VGNTCLYGATGGEIFVSGSAGERFGVRNSGAKAVIEGAGDHCCEYMTGGHVTVLGSVG LNFAAGMTGGFAYVLDEDRTFFDKCNRSLVGLERITTEEMQPHRKHLKEIIKKHFENT QSKKAKNILDDFDKYEPHFWLIVPAASNIQDLLKATTANAA" gene 60266..61939 /locus_tag="NT01SARS_0910" CDS 60266..61939 /locus_tag="NT01SARS_0910" /note="identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318" /codon_start=1 /transl_table=11 /product="glutamate synthase, small subunit" /protein_id="EJP71110.1" /translation="MSYTFYRMANKNKQYKIEKGLLLFTQPRSPYFYGKIRLKGKYLT KSFSPISDFNTAKEKLYEWKKELTSKSDNFSTNEVMDRNQYTDFKELDNKFQFLDVGR FDPAKKSVSERKINFVEIYGEYNESQASNQAHRCLDCGNPYCEWKCPVHNYIPDWLKL VNEGNIMEAADLCHSTNSLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGSIEKYITEK AFEMGWKPNLQNRKWTNKKVAIVGSGPAGIACADILTRSGIKSHVYDKNDEIGGLLTF GIPEFKLEKSVVKRRRKILEEMGIKFHLGKEIGKDVPFKRLYDTHDAVFLAMGTYTSL EGGFKGEKLPGVYKAIDYLVSNTKKLLNMDSGKAEFINFKGKKVIVLGGGDTAMDCNR TAIRQGAKSVTCLYRRDEKNMPGSRREVKNAKEEGVVFDFNIQPIDILGNEKVEGVKT VTTKLGEPDQNGRRVPIPVPGSEKIYDADVVIVAFGFRASPATWFSDFEIKTKKNGLV IAEEDQQYKFQTSNEKIFSGGDMVRGSDLVVTAIWEGREAAKSIIKYVS" gene 61939..62973 /gene="hemE" /locus_tag="NT01SARS_0912" CDS 61939..62973 /gene="hemE" /locus_tag="NT01SARS_0912" /EC_number="4.1.1.37" /note="identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464" /codon_start=1 /transl_table=11 /product="uroporphyrinogen decarboxylase" /protein_id="EJP71111.1" /translation="MNSDSSFLKALNKESLPTPPIWYMRQAGRYMPEYQNVRKKFKNF LDMCKEPDICCELALQPINAFELDAAILFSDILTIPDSFGLGVEFVEKEGPVFNNPIN SSTDISNLDHFDPESLDYVYKAVKNIKNSLSEEIPLIGFCGSPWTLAAYSIEGRSSKD FEKTLGFLESNQKDVHNLLTKYTDACFLYLRRQVQSGADVIQIFDSWANLLTKEGLIE YSFNYINALISALKLDPVTKNIPVIVFARNPKCNIEELINTSADCISLFWSMNDLNFE VAKNKVAIQGNLDPKILLESDETIKRETYKILERFKEYPGYIFNLGHGITPDISPDKI KYLTNIVREY" gene complement(62970..63845) /locus_tag="NT01SARS_0911" CDS complement(62970..63845) /locus_tag="NT01SARS_0911" /note="identified by match to protein family HMM PF02551" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase 2" /protein_id="EJP71112.1" /translation="MNKKSVLKKSLELFELEKIDRDIFSWNGKNVGYKRIFGGQVMAQ TLIAAYKTIDVEHFAHSYHSYFLRPGNMDKSITFTVDRIRDGKSFTTRSVKAIQEGEA IFNCSISFQKREKGLEHQIEMPDVPEPESLKSEQEIREEILKELKMKKEDMPMFIKQR EIEMRPVEHQNYFKPERMPPYKNTWIKTDGSLPEDQVIQQAFLLYISDMGLLGAANNS VGVNFLTKNLQNASLDHAMWFHRKLDLDGWFLYSIDSPVTRNARGFSRGSIFSRDGKL IASCTQEGLIRLWEN" gene complement(63851..64606) /locus_tag="NT01SARS_0913" CDS complement(63851..64606) /locus_tag="NT01SARS_0913" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase" /protein_id="EJP71113.1" /translation="MTERLKGKVALITGAAQGLGKEMANSMIEEGAVVFISDINESEL KKTCNELSCQGINLDVTKSEDWISAIEFIKNEAGSLNILVNNAGIGNGGDIESTDIET WKLVHSVNLDSVFLGCKHAIELMRDSGDGSIINISSMSGIVASHNTSAYNSSKAAVRH LSKSIALHCAKTTNLVRCNSIHPVFTRTAMVQTMIDAAPERNIEQKLIQQIPIRKLAE PKDIANAAVFLASDESSFITGTELLIDGGLSAT" gene 64717..65703 /locus_tag="NT01SARS_0914" CDS 64717..65703 /locus_tag="NT01SARS_0914" /note="identified by match to protein family HMM PF07728" /codon_start=1 /transl_table=11 /product="aerobic cobaltochelatase subunit CobS" /protein_id="EJP71114.1" /translation="MTINKEIDLPNKPDNKISVADVFNIDSKLTVKGFAKKTAWVPEI DSSYVFDKETTLSILAGFEHNRRVMIQGFHGTGKSTHIEQIAARLNWPCVRINLDSHI SRIDLLGKDAIKLNDGKQITEFQEGLLPWSIQNPVALVFDEYDAGRPDVMFVIQRILE VEGKLTLLDQNKIINPHSSFRLFATTNTVGLGDMTGLYHGTQQINQGQMDRWHILSTL NYLDPSQELKVVMSKLNNLKGEKNKEIIKNMIKLANLTRVGFANGDISTLMSPRTVIS WGQNFKIFKDLVTSFNLTFLNKCDDIEKSIISEYFQRCFDIEIDNGESGSAS" gene 65703..67466 /locus_tag="NT01SARS_0915" CDS 65703..67466 /locus_tag="NT01SARS_0915" /note="identified by match to protein family HMM PF06213" /codon_start=1 /transl_table=11 /product="aerobic cobaltochelatase subunit CobT" /protein_id="EJP71115.1" /translation="MSWTKKRERLHEAAVSTIRAISNNKKISSNTGLSQRPPTSDHVA LPNVPRSFKDLNKWRGESDFQAFWHLFHKKSKDFQLTLPARMIFNELEIARVELLGSS KYLGSERNISEYTNSRSNELEDEKSLNFLSYGANLWLKEFMNFDLSENSKNIISKFIK KYKIDASANKIRENLIKNLDDQVSFEKNAIQFLQKLDLVKENVEDEENNFEEAPGSTD DIVNEEETTQEDSGIEEKIDLKDFDGDLNVDIQDAIENIDDTSIEDEIESLTYPNNDF QTSYIDDYSIYTSNFDEIIDAKDLVTNEESMRLRNQLDNLIKPHISTIGKLANRLQRL LLAKQNTSWNFNLEEGILDNSRLHRVIASPGYPLSFKQETENDFKDTIVTLLIDNSGS MRGRSISLAAICADIIGSTLERCQVKTEILGFTTKHWKGGDSKKLWIINGSRSNPGRL NDIRHIIYKSADNSWRRSRKYFGAMLREGLLKENVDGEALAWSHDRLLKRHEERKILI VISDGAPVDDSTLSANREDFLDNHLREIISKIEKDSPVELQAIGIGHDVTKYYKNALT INRAEELGEVLLEELTKLFKD" gene 67529..68635 /locus_tag="NT01SARS_0916" CDS 67529..68635 /locus_tag="NT01SARS_0916" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase, beta subunit" /protein_id="EJP71116.1" /translation="MKIRNQDGPPEDLLYFDEDLDLSQKQVEDVVEIFKTPLTGAYNW DYTIADNRIKKLYELGKELNWNGSIDLNWDYTHPADEKLVEPDEELPHEALEAYQALS EEEKILFDRHNTAELMSQFLHGEQGALLVASQLASCAPTYNAKLYAASQTFDEARHVE VFNRYLQDKIGIHYPINPSLKLLLDKILTDERWDLKFIGMQIIIEGLALAAFQMLKAI TKDPLLKQLLHYVVRDEARHVTFGINYLEDYLTTLSKEEINERAQFAYEACVISRDRL VNTQAEQRFLKMTAEEAREFQLSTGTFEMFRNFLFSRVMPNLKRIGLLTDEVRPKFEA LGLLEYEHAPDDFECDWAEMKKPLEKFGQIPTNL" gene 68696..69487 /locus_tag="NT01SARS_0917" CDS 68696..69487 /locus_tag="NT01SARS_0917" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71117.1" /translation="MSKHAALDTFGRSGNPVIRSSAFDSRASSDSERMTLDGAVNKTA IMLAILISTAAISWNFPSPFIVMLSYIGIFAAAIASVATFGFWMPFIGFIINPRPYLA PKTWLVFAFGEGFFIGLISLSFETMFPGIVLEAVSLTFCVAATLLFLYKSGIVKPSQN FVLMVCSAVFGIFLFYIGTLIYSLVTGVSPEIFSGSSNASIGLSLFIVAMAAFSLVLD FDIIEQSAEYGSPKYMEYFGAMALVTTLIWLYIEILRLLAKFRSR" gene 69487..69708 /locus_tag="NT01SARS_0918" CDS 69487..69708 /locus_tag="NT01SARS_0918" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71118.1" /translation="MFSSNPLILFLGLVSFGIFFYLLRIRASKNQIESFENKKRMNWS WLWLRYGKDKSKSNVIEGEAKEVNHEEKK" gene 69692..71887 /locus_tag="NT01SARS_0919" CDS 69692..71887 /locus_tag="NT01SARS_0919" /note="identified by match to protein family HMM PF03713" /codon_start=1 /transl_table=11 /product="putative secreted protein" /protein_id="EJP71119.1" /translation="MKKRSNTLIKHLRLIFFTTLTLQIVGSELNQDPQIIQPGAPGNP SKVIDAKEATDIANTSYIKADVDFLQGMIVHHEQAIVMSEMADERTNNKSILDLAKRI DASQKDEINFMESWLKDRDEFKKVVDEHHHNHHDHNMHNHIDMVGMATPKQLNDLSNS DSTSFDRLFLKLMINHHDGALEMVEELKKYPGNTYDPILNEFVSDLINDQGVEIERMN TLLTSLSDDPRAGLAGGLFIAEEAILNMELITSLKKPTGFFDPENPAAKGSEDLTEDN EDKTTAEISRSLRSPMLSFANTDMAFKDNILVAGSYHGFNIYELGNDGIPSLISSVVC PGGQGDVSIVGNLLIMSVEENRSRIDCGLEGVNSDSSPERFRGIRIFDISNLYKPKQV GAVQTCRGSHTHSVVSSDRKKIIVYNSGTGRVRDTEEKEDCFGWDGGGSSYFSIDIIE IPIKNPSRSKIVKSPRVFMDLETGNVAGLWRGGDHGDDTQDTNSTNQCHDITVFPSAN IAAGACSGNGILFDITDPYNPERLDVVTDIGFAYWHSATFNNDGTKVIFTDEWGGGGR ARCRAWDPLDWGADAIYDIVDKKLVFKSHYKMPAPQLETENCVAHNGSIIPIPNRDIF VQAWYQGGISIMDFTDSSMPKEIAYFDRGPILEDILITGGYWSTYYYDGFIYGTEITR GLDVFRLTPSEYISEKEIEAASKAFPAVGDSVFNPQQQFPMAWPATFLE" gene 71898..72710 /locus_tag="NT01SARS_0920" CDS 71898..72710 /locus_tag="NT01SARS_0920" /note="identified by match to protein family HMM PF01869" /codon_start=1 /transl_table=11 /product="ATPase BadF/BadG/BcrA/BcrD type" /protein_id="EJP71120.1" /translation="MFVAIDFGITNTDVAVNQNGDDIFYSFPSRSITNEFIDYIFNEI DLDFVNLRKIGVTGGKSSNLSNTYKDIPIIKINEVDAIGLGAIALYDISEESFVAVSA GTGTACIHHNNGKFNHLGGISVGGGTLQGLSKYLISTENAKDIEELAKKGDRKELDFL IGDVVNEVGSLNQDITASNFGKARNIENTSKEDTAASLSNMIGEIIGTISYLNALLCN ENKVYFLGRTSLNKVIKTAIEDRLKLANISGVFKENREYGNVLGALRSIQSD" gene 72728..73978 /locus_tag="NT01SARS_0921" CDS 72728..73978 /locus_tag="NT01SARS_0921" /note="identified by match to protein family HMM PF04116" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="EJP71121.1" /translation="MEVLTDKSIIITLAVPAFFVLIIIEYFYGLFIGKNTYRLNDTLT SISLGMISRFPVMLNFGVQSAIFIYISKYLNLGLLSVKNPFTWIAAFLLYDLSYYWMH RMHHEIKILWATHSVHHHGEDYNLATALRQTSTGWLWKWIFYTPMMLIGVPGEVFVTV AGINLVYQFWVHTEHIGHLGFLEKIFITPMNHRIHHAKNKEYIDANYGGVFIIWDRMF GTYTPQRDELDPVYGTATPLNSWNPIWANFQVFSIMVKDTIKTKLWKDKIKVWFAETY WRPEDCIEEKDPKDFYKKFNPTIGTDIKIFSVTQILFTTTVFNLVFINAPLLSYFEIC LFGVSLVTLASLTGYLMHGKRIAYQLILLFSILSILTIFTYDPINMSLISSKLLLAQL SCNVITVTGILFFQSLLNLRSLKT" gene complement(73980..76121) /gene="katG" /locus_tag="NT01SARS_0922" CDS complement(73980..76121) /gene="katG" /locus_tag="NT01SARS_0922" /EC_number="1.11.1.6" /note="identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198" /codon_start=1 /transl_table=11 /product="catalase/peroxidase HPI" /protein_id="EJP71122.1" /translation="MTDKSEGKCPVMHGAMTTNSSSGTSTRDWWPNQLNLNILHQHDK KSNPMDEDFDYREEFKKIDYEALKKDLNELMTDSQDWWPADYGHYGPFFIRMTWHAAG TYRNTDGRGGGGTGAQRFAPLNSWPDNGNLDKARRLLWPIKQKYGKQISWADLLILAG NVAIESMGGTTFGFSGGRADIWGPEEDIHWGVESEWLENKRYKGKRELDNPLAAVQMG LIYVNPQGPDGNPDPLASAHDIRETFGRMAMNDEETVALVAGGHTFGKAHGAGAEDHV QSEPEGAPLEEMGFGWTSTYASGVGSDTITSGIEGAWTANPTQWDNGYFDLLFGYEWE LTKSPAGAHIWHAVGQTEEDMAPDAEDASKKVPTMMTTADMALREDPSYKKISKRFHE NPDEFADAFARAWFKLLHRDMGPKSRYMGPEVPGEELIWQDPVPLGNSDYDIEKVKEM ISKSGLSIQEMVETAWASASTYRGSDMRGGANGSRIRLAPQKDWEANNPSQLSKVLDI YESISNETGASVADVVVLAGNLAIEKASGVEVPFTPGRGDASQEQTDIESFEVLEPKS DAFRNYHAKGVNTSPEEIMLDKAQLLGLTAPEMTVLVGGLRSLGISSNGYGLFTEDSN KLSNDYFKTLLDMSVQWKPNGTGNSYEAFDRKSGEKVRTASRSDLVFGSNSQLRAIVE VYAEDDSSDKFAKDFICAWNKVMNADRFDVQ" gene complement(76221..76298) /locus_tag="NT01SARS_0923" tRNA complement(76221..76298) /locus_tag="NT01SARS_0923" /product="tRNA-Ala" gene complement(76344..76892) /locus_tag="NT01SARS_0924" CDS complement(76344..76892) /locus_tag="NT01SARS_0924" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71123.1" /translation="MKNYLKYDDVKVFKYDNLVLAVIYTIGHILIAMTCNRIITGASL DMAAADAFIEPIINGFWFYFLLVVLKNHITKRLDNMPTKIFSSHNVGIYLAIIYTIGH ILIAMTCNRLLTGAPLNLAAIDAIVEPVVNGFWFYLLFEVFNIYKENVVASASGRSSK NPNPEQLKSSKLAPINNKKNLD" gene complement(76982..78142) /locus_tag="NT01SARS_0925" CDS complement(76982..78142) /locus_tag="NT01SARS_0925" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP71124.1" /translation="MDGKLPVQIEYKHNNRYYTNEGYQFKVSTEVGIHSITLGYRDME DSESRVQAHEYADQAADGSLSALYGYVGLSGSNNRLRESSATSYYIEDTMDFGKLAIT LGYRSEDYEQRHRRWSDKAGPNLTEVRTGPADVRDTMAYNDHTTSSIAATYDLSDTTT LVAGFHEGMTPMFGADPEEADNMELGVRYSEGTSNMEVFYFASDYSRLAAECTLVSGA ACDADESAIFSGGEAEVTGLELNGSVVFQGDGVTYPVSISWTNTDATFKNSSESDYFG VVAAGDDLPYIPNKQSSVVAGFITDNGLSGSARWVNVGSSCSLAACGTYNKIESHSYL DLSLRKAINDSMDVYVILENTTDQADLISRAPSEGARSQKPRTMKLGFTYSF" assembly_gap 78274..78293 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(78308..79162) /locus_tag="NT01SARS_0926" CDS complement(78308..79162) /locus_tag="NT01SARS_0926" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00141" /codon_start=1 /transl_table=11 /product="catalase-peroxidase" /protein_id="EJP71125.1" /translation="MTDKSEGKCPVMHGAMTTNSSSGTSTRDWWPNQLNLNILHQHDK KSNPMDEDFDYREEFKKIDYEALKKDLNELMTDSQDWWPADYGHYGPFFIRMTWHAAG TYRNTDGRGGGGTGAQRFAPLNSWPDNGNLDKARRLLWPIKQKYGKQISWADLLILAG NVAIESMGGTTFGFSGGRADIWGPEEDIHWGVESEWLENKRYKGERELDNPLAAVQMG LIYVNPQGPDGNPDPLASAHDIRETFGRMAMNDEETVALVAEVILLEKRMELEQKIMF NQNQRELH" gene complement(79261..79338) /locus_tag="NT01SARS_0927" tRNA complement(79261..79338) /locus_tag="NT01SARS_0927" /product="tRNA-Ala" gene complement(79431..79931) /locus_tag="NT01SARS_0928" CDS complement(79431..79931) /locus_tag="NT01SARS_0928" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71126.1" /translation="MKNYLKYDDVKVFKYDNLVLAVIYTIGHILIAMTCNRIITGATL DMAAADAFIEPIINGFWFYFLLVVLKNLITKRLDNMPTKIFSSHNVGIYLAVIYTIGH ILIAMTCNRLLTGAPLNLAAIDAIVEPVVNGFWFYLLFEVFNIYKENVVASAQAEAVK IQILSN" gene complement(80021..82054) /locus_tag="NT01SARS_0929" CDS complement(80021..82054) /locus_tag="NT01SARS_0929" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP71127.1" /translation="MSSFVIAQDNNDDVEEVIVKGNVLYSDQVTALKTPVPVLDVPQT VSIVTDDDIRKQGFRQIGDIVRYTPGVNTSQGEGHRDAVVFRGVRSTADFFQDGTRDD VQYYRSLYNVEQVEILRGPNALLFGRGGTGGVINRVSKKAVIGEKFGAVDFGLDDFGG NDLVIDSNVQINDTSAFRIMFHSDTLKNHRDYYDGDRIGFNPTLKVKMSDRTTLDLSY EHADHERFIDRGIPTENGSPVKRFAGITFGDSKGDNLQTLEADIFRATLSTVFSDTRK ANLQIVSSEFEKMYKNYYASGYTAGATVVTMDGYLDPTERENTIISGNLVNEIQIGSA THTMLFGAEIIDTTNNNYRYNTYFSNTKDDNEVFNITDPMDFTVNAAGQASTNDYTAD LKSKTKSDIEVTSIYFQDQIDISDNLKVMIGGRHDTFDITVTDIKNSSAQSREDKEFS PRAGIVYKPKENVSYYYSYSESFLPRSGEQFKALSASSAALDPDVYESSEIGVKVALS DDLSLTAAYFDSEQTRAARDSETGETNEIVGLQVDGMELELKGSVSEKMDIVFGLTKM SGKTAKGGEPREIPDHMISLFATNQVSDKLGWSLGLTRQGESAIGNDKPGNVLPAYTR VDFAAYYMIADDLSVQMNIENLNDTLYFPHSHSTHQASVGEPLNVRFSIRKTF" gene 82086..82232 /locus_tag="NT01SARS_0930" CDS 82086..82232 /locus_tag="NT01SARS_0930" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71128.1" /translation="MSSINLFXXXXXXXXIHIILLSFENKAVLIELELIKNAFCNVKR KLSI" assembly_gap 82109..82128 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(82254..83558) /locus_tag="NT01SARS_0931" CDS complement(82254..83558) /locus_tag="NT01SARS_0931" /note="identified by match to protein family HMM PF01571; match to protein family HMM PF08669" /codon_start=1 /transl_table=11 /product="aminomethyltransferase, glycine cleavage system T protein" /protein_id="EJP71129.1" /translation="MSHPNHPNVDQSDRVVPINLRQSGRTPTELLISTRVRKSPFWHL SHEAGCWRATVYNRIYHPRGYVKPEDGGAMVEYEALVNRVTMWNVAVERQIRVKGPDA EAFTDFVITRDATKIEPMHGKYAILCNEKGGILNDPVLLRLSEDEFWFSISDSDLLLW MQGVNVAKQFNVEIDEIDVCPLQIQGPLSEDLMAKLAGEELRDVPYYGLMEANINGAD CVISQTGFTGEKGYEIYVRDTHENAEKVWNKVLEDGEEFGLMVIAPAHHRRIAAGILS WGQDLDHETSPFQVNLAYQVPRNKKSDYIGKAELERQRDVIDSGDAPFKMKMVGITLG GKEITDYAPDFWLVADTDGNDMGYVTSPWWSPELETNIALAWVPWSSSEVGTKLLVKL PDEYSVTPGEPVEGEVVDVPFRASVNPNKREVEAAKGKDFAE" gene 83645..84130 /locus_tag="NT01SARS_0932" CDS 83645..84130 /locus_tag="NT01SARS_0932" /note="identified by match to protein family HMM PF04214" /codon_start=1 /transl_table=11 /product="ATP synthase F0, subunit B" /protein_id="EJP71130.1" /translation="MKKLIIIVSFLGPFFLNSHEMISEKETLSNDIKNEFLLLVHKTP TCGCCKMWMKHIEEDGFTAYGQDHQNLMKIKEKYNIEPQYRSCHTAVSSNGFIFEGHI PSKYIKQFLSEDHPEAIGLSVPGMPLGSPGMEVDDRFMPYDVLILFKDGTSKVYAEVR K" gene complement(84130..84208) /locus_tag="NT01SARS_0933" tRNA complement(84130..84208) /locus_tag="NT01SARS_0933" /product="tRNA-Met" assembly_gap 84339..84697 /estimated_length=359 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(85826..85904) /locus_tag="NT01SARS_0935" tRNA complement(85826..85904) /locus_tag="NT01SARS_0935" /product="tRNA-Met" gene complement(86151..86897) /locus_tag="NT01SARS_0936" CDS complement(86151..86897) /locus_tag="NT01SARS_0936" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01571" /codon_start=1 /transl_table=11 /product="aminomethyltransferase" /protein_id="EJP71131.1" /translation="MTHPNHPNVDQSDRVVPINLRQSGRTPTELLISTRVRKSPFWHL SHEAGCWRATVYNRIYHPRGYVKPEDGGAMVEYEALVNRVTMWNVAVERQIRVKGPDA EAFTDFVITRDATKIEPMHGKYAILCNEKGGILNDPVLLRLSEDEFWFSISDSDLLLW MQGVNVAKKFNVEIDEIDVCPLQIQGPLSEDLMAKLAGEELRDVPYYGLMEANINGAD CVISQTGFTGEKGXXXXXXXSQLSSSFLKI" assembly_gap 86185..86204 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 87124..87594 /locus_tag="NT01SARS_0937" CDS 87124..87594 /locus_tag="NT01SARS_0937" /note="identified by match to protein family HMM PF04214" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="EJP71132.1" /translation="MIKKSLYLLFVIIFVPFVISENDIPDLNSEQMLLVHKTPTCGCC KMWMKHVEENGFTAYGQDHQNLMKIKEKYNIEPQYRSCHTAVSSDGFVFEGHIPSKYI KQFLSEDHPEAIGLSVPGMPLGSPGMEVDDRFMPYDVLILFKDGTSKVYAEVRQ" gene 87674..88405 /locus_tag="NT01SARS_0938" CDS 87674..88405 /locus_tag="NT01SARS_0938" /note="identified by match to protein family HMM PF02517" /codon_start=1 /transl_table=11 /product="abortive infection protein" /protein_id="EJP71133.1" /translation="MTSSSENYYNPFGAVLLALIIFFLPVTFLYIILGITESLLEKDL LNQNPVNVNINGLETTLYPIKDNLLYLISIPIQIWLMILFLKRKSISLTQSLGLYKFN KKAFISSFVLWLIVFALSYLYGYLLDIEIPEDFVNLTKAAPPLLIAIVFIIGAPIVEE LLFRGFLFSNLKHSVLGVNGSIILTTILWTSIHLQYDFSLLISLFFLGLLLGYIRHKY NSVYLAIVIHAIHNLLATINILFFI" gene complement(88412..88490) /locus_tag="NT01SARS_0939" tRNA complement(88412..88490) /locus_tag="NT01SARS_0939" /product="tRNA-Met" gene 88589..89224 /locus_tag="NT01SARS_0940" CDS 88589..89224 /locus_tag="NT01SARS_0940" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71134.1" /translation="MINLDDITPFAEGGNRMCFVHPNNPSRCLKVVHPGLLEKIKKNK SWYKRFRSLESFDDNLREQEAYNQKALKKDDPDMWTHLAKWHGMTETNIGMASETELI TNNGEIAETLETYLFREGITEEIKLAIQEFQTWLEKHLILTKNLIPHNLVICQQNEKI IIKIIDGLGSQAFIPLPNYSSFFAKRYVKRRIQLMWSRIHWDLSGRKGSWK" gene complement(89226..91040) /locus_tag="NT01SARS_0941" CDS complement(89226..91040) /locus_tag="NT01SARS_0941" /note="identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor RpoD" /protein_id="EJP71135.1" /translation="MDKLNQKGSKIAELIEKGREQGYLTYSDVNDHLPDDISDPDQVD EIIGMINDLGLQVHETAPDADTLMLAESEDSDDIALEQAAEALAAVENETGRTTDPVR MYMREMGTVDLLTREGEIEIAKRIEEGMRDLLNASVMYPKTVEYVLHYFQLVKDGEKK INDFLTGFLEEMEEVPSAGPGSQRAKEEAEAAESSDEEGSSGPDMKEVQKRMTSLKRQ FNKTTKVIDKKGRHSKEANAEFKKLGEIFQFLKFSPRMFEDIAAIARHGLNSIREKEK FIQTQLVKNARIPRKDFLVLYPENLTKVRWVDGLMKEKKYKKDLLEKVKQDVVIAQKD ILEIENKVGLSIKEIKEINRNMSMGETKMRRAKKDMVEANLRLVISIAKKYTNRGLQF LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET INKLNRVSRQMMQDMGREPTPEELSKELDMPEDKVRKVLKIAKEPISTETPIGDDEDS SLGDFIEDTVIESPLENATEESLHFATDDVLASLTAREAKVLRMRFGIGMNTDHTLEE VGKQFDVTRERIRQIEAKALRKLRHPSRSSHLKSFLDE" gene complement(91098..92873) /locus_tag="NT01SARS_0942" CDS complement(91098..92873) /locus_tag="NT01SARS_0942" /note="identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM PF08278; match to protein family HMM TIGR01391" /codon_start=1 /transl_table=11 /product="DNA primase" /protein_id="EJP71136.1" /translation="MSIPSTFIDRLLSSINIVDVIGRRLTLERKGGAYWAKCPFHGSG EERTASFKVYEETGTYHCFGCKESGNAIHFLRKHDGLDFLEAVETLATQVGMEIPKQE APVDTSNATKINNRASQVFYEQLKSDQGKKTIKYLKERGISGETAKFFQLGYSSNKKP TLYENLKNEFKEIDLDESGLFGKNDDGEYYDRFRDRLMFPIRNIKGECIAFGGRLLSD KKDQAKYLNSPETKTYKKKYELYGLYEIREINKRPESIFLVEGYMDVIGLFQHGIKNA VASSGTAFTQEQLRKILSYTNTIYIVFDGDEAGYKASWRAVENALPLLREDTRISFIF LEPDEDPDSYVSSNGKDAFLNLAKEAKSFSDFFFDYVKDQDDLTTLEGRSMVAKFALP LVNKISNDTLKEAYINEVSKICDLDFSKLIQGESKSKKVSPTKKEEVKESTNTVLRKS VLGIFTALIQHPKLSSINEFSLITHDSKFNFINDIKNLYQDSPDSNPSIIFEKIESER IKNIFGEALVSEVKLSEEDATSMIKDCLKIISQTNSEREEILKEKYNMQELTSAEKRE LQQIILKKDKMSQDEEALIKNLSSI" gene complement(92876..93268) /locus_tag="NT01SARS_0943" CDS complement(92876..93268) /locus_tag="NT01SARS_0943" /note="identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250" /codon_start=1 /transl_table=11 /product="putative crossover junction endodeoxyribonuclease" /protein_id="EJP71137.1" /translation="MQIVAFDYGEKKIGVAVGQTETNTSSPLQIIFNNNDQVNWNEIS VLLDEWKPELIIIGKPLNMDGTDSEIMKKVEKFVKHLKTIYDAQYEYIDERLTTFEAK EILIENKSDIVDANAAKILIDNWFNKEL" gene complement(93269..93802) /locus_tag="NT01SARS_0944" CDS complement(93269..93802) /locus_tag="NT01SARS_0944" /codon_start=1 /transl_table=11 /product="TonB family protein" /protein_id="EJP71138.1" /translation="MIFGISITTYYKLPIFKESPIINVKFANSNQDLITKTNLGDSFS SDLDLSISQNGNISSSKKTLQPYKVKKLQANSVVNTEEAVYLNLWQRQIETNGDNIIS ESKSFLDGRVQIMATIDVYGNLVKSEILISSGDKAIDDMAINILKESAPFAPFNKTMS NEYSVLEIVRDWNFSIN" gene complement(93889..94815) /gene="gshB" /locus_tag="NT01SARS_0945" CDS complement(93889..94815) /gene="gshB" /locus_tag="NT01SARS_0945" /EC_number="6.3.2.3" /note="identified by match to protein family HMM PF02655; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; match to protein family HMM TIGR01380" /codon_start=1 /transl_table=11 /product="glutathione synthase" /protein_id="EJP71139.1" /translation="MTEKVLFITDTFENLNFKKDTSILMIEEALKKEMNVFQCEINDL FVDNNDVLVNCREINSLSEDIDTEVKKIDIDLKDFKYCFMRKDPPVDEDYNNALHLLD LAKHNGAVIHNNPCALKKFNEKVFATHFPEFIPKTLISSSINKIRAFFDSHKKIIIKP LDGMGGTSIYKVDDLNEDNLKIIRTMTNSEKTQIICQSFIEDVYEGDFRILIINGKPF PKTLARIPKDGDFKGNLAAGGKGVAKDITENQKKIAEAIAPILVKNEISFAGIDIVGK YLTEINITSPTCAREILDQTQMNPIEEYFKGL" gene complement(94818..95552) /locus_tag="NT01SARS_0946" CDS complement(94818..95552) /locus_tag="NT01SARS_0946" /EC_number="2.1.1.-" /note="identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, RsmE family" /protein_id="EJP71140.1" /translation="MRIHRVYCKSVSGPNTKFALDNIQSHHLIKALRLKEGRVVEVFD GNGSSASCEIVLLNNNKCELERISEVNKDYEPHRTLTNIIPFIKTNNFNYMVQKLSEI GVNKFIIYKPELCDQSIAKKDLEKIIQKSKDIIINVCKQCGNNFLPQIIHTRNLDEAI NLIEDDNNKYVFDTDAEKYFSFEELGSTSSITTITGPESGFSEKELDSIKKNNIEIRY LGENILKAETAPIFVSSIVKNHFGKI" gene 95583..96146 /locus_tag="NT01SARS_0947" CDS 95583..96146 /locus_tag="NT01SARS_0947" /note="identified by match to protein family HMM PF00300" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase family protein" /protein_id="EJP71141.1" /translation="MASIEVIFIRHAEASSSWGDHHDPGLSDTGIAQSKKLINRPELK QLDDYSFISSPKLRAVETARPLAKKFKKELIIENIFTEIPSPNIEPENKQEWLKNILQ MNKNDLPENIAKWKDNIISKTKALSQDSVVFTHFMVINALLSELNSKTKLLYFYPDYT SIVKITIEDGEFINFSIDKDKKTFINL" gene 96210..96476 /locus_tag="NT01SARS_0948" CDS 96210..96476 /locus_tag="NT01SARS_0948" /note="identified by match to protein family HMM PF02954" /codon_start=1 /transl_table=11 /product="DNA-binding protein Fis" /protein_id="EJP71142.1" /translation="MKNNNKSFDNYAKKPLKDEVRKAMSRYFNQLDQKNTPIDVYQLV LNEVEPPLLRSVMQFSNNNQSKAAKILGINRTTLRTKLKKYKIE" gene 96479..98017 /gene="purH" /locus_tag="NT01SARS_0949" CDS 96479..98017 /gene="purH" /locus_tag="NT01SARS_0949" /EC_number="2.1.2.3" /EC_number="3.5.4.10" /note="identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase" /protein_id="EJP71143.1" /translation="MNIVNPKTALISLSDKTNLEEIVSFLIKKDVKILSTGGTYKAIK EITDKVTEVSEFTGFEEMMDGRVKTLHPKIHAGILARRESDMKVLKERGYETIDLVIV NLYPFTETIKKGSSFEDAIENIDIGGPTMIRAAAKNFKDVVVVCNPNDYSHIIREWDE NDGISYETRKNLSQKVFALMANYNKSISDYLKGEVVDIHSYNFSSNVNLRYGENPHQN ATLFTFDNLKNKNIANAEIIQGKELSYNNIVDADAAWECVREFSNPACVIVKHANPCG VAEAKSINEAYDLSFKTDPTSAFGGIIAFNKKLDKETAKEINQRQFVELVIAPDYEKD AIKEFSSKKNIRVLRVDLDQDNPYPGTIKKVSGGILIQDDDTKKLDANELRCVTQRKP SDDELDDLLFAWKVAKFVKSNAIVYVKNKQTIGIGAGQMSRVISAEIANLKAKEEGLE VKNAVMASDAFFPFRDGIDKAASSGIAAIIQPGGSIKDDEVIAAANEHNIAMMFTGMR HFRH" gene 98017..99285 /gene="purD" /locus_tag="NT01SARS_0950" CDS 98017..99285 /gene="purD" /locus_tag="NT01SARS_0950" /EC_number="6.3.4.13" /note="identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877" /codon_start=1 /transl_table=11 /product="phosphoribosylamine--glycine ligase" /protein_id="EJP71144.1" /translation="MKVLIIGSGGREHALAWKCAQDDIVKHVFVCPGNAGTHLEDKVS NVELNLNEFSSIEKFCLEEIVELVIIGPEQPLVDGLTDFLQSKNIKTFGPSKNAAQLE GSKTFSKDFFVKYNIPTAKYKSFDNFESSLEYLNEISFPTVVKADGLAAGKGVIICQN SEEAIKALDSIFNDKAFGTAGNRVVIEEFLEGEEASFIAVVSKDKIIPLATSQDHKAV GDGDVGLNTGGMGAYSPAPIVTEEIHKKILNEVMYPTMNGLINEGSPYLGFLYAGLMI KDNEIKVLEFNCRFGDPETQPILLRLNSSLVELCKAAIDDELDTYSIQWTEKHSCGVV IASEGYPEDYESNKKVSIKENNIKDSKLFHAGTKYENETILTSGGRVFCATALGSDLK DAQKNAYNLVNNVEFDGAFFRKDIGFKGIK" gene 99282..99917 /locus_tag="NT01SARS_0951" CDS 99282..99917 /locus_tag="NT01SARS_0951" /codon_start=1 /transl_table=11 /product="2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase" /protein_id="EJP71145.1" /translation="MSILNNIVNELDIALRTLSDKKTGTDREYPPAPKEKNTEELSKK EKDLSIQMMRINHAGEVAAQALYRGQAFVCKDPKIKEHLIHAGEEETDHLVWCKKRLD ELGGNSSILNPLWYAGSFAIGAIFGSMGEKTSLGFVEETEKQVVIHLQKHLDKISEKD KETIEILKTMQADEDLHAGQANESGAEELESPTKKVMEVTAKVMTSTSAYI" gene 99928..101238 /locus_tag="NT01SARS_0952" CDS 99928..101238 /locus_tag="NT01SARS_0952" /note="identified by match to protein family HMM PF00083; match to protein family HMM PF07690" /codon_start=1 /transl_table=11 /product="inner membrane metabolite transport protein YhjE" /protein_id="EJP71146.1" /translation="MNQSTSVNQDKNMRKVALTALAGTSIEWYDFFLYGAAAALIFPT AFFGEVPETTALILSLLTFAAGFIARPIGGIIFGHFGDRVGRKKTLIAALMLMGISST LIGLLPTYAMIGVTAPILLTLLRFAQGLAIGGQWGGAMLLVTESAPSNQRGYYGAFAQ AGAPIGVILANLALIVTSALVSEEFFNTWGWRIPFLASAVLILISMYIQLNLEDTKAF KALATNSDNSSNEKVKSSPVVEAIRRYPKRIMLAAGAFLSVQVTFYILIAFMLAYGVS SANMERDDMLTAVLIGCAIMVPLQFMFSSYSDRNGRKGIFMLGAILSGIWAFAIFPLV DTGNFWLIVLALTFGLIFLAMMYGPQAAFFTELFSTEVRYSGATLGYQFGAIVGGAFA PTIAVKLWSDFDIFWVSVYIAFAAFLTLISVMALTETYQSNLDD" gene complement(101249..101803) /locus_tag="NT01SARS_0953" CDS complement(101249..101803) /locus_tag="NT01SARS_0953" /note="identified by match to protein family HMM PF00578; match to protein family HMM PF08534" /codon_start=1 /transl_table=11 /product="thiol-disulfide isomerase and thioredoxin" /protein_id="EJP71147.1" /translation="MALTYSSMLELQTDLIEFDLLNSVSNKNFSSDSIDRDKPSLIMF ICNHCPYVIHYHDEIIRLEEDYAESINMIAISSNDIISHPQDNPHKMKEMWNSLDLSF PYLFDETQEIARKYKAECTPEFYLFDSNQKLVYRGRLDESSPGSDQVPSGKDLRTAID NLQNNKPISDEQFPSMGCNIKWKS" gene complement(101811..102980) /locus_tag="NT01SARS_0954" CDS complement(101811..102980) /locus_tag="NT01SARS_0954" /note="identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851" /codon_start=1 /transl_table=11 /product="DNA repair helicase" /protein_id="EJP71148.1" /translation="MKLREWQEKAFPLWWAKKRGIIKVVTGGGKTFFAIHCLKKYLED DPQKSILIVVPSIALLDQWYESLSQEFKSKEISLNGGGEQTNGLKKICITTIDSLKNI IEEVNYQNTLLIVDECHKIGTEKRGEMLSNNWNATLGLSATPERDYDDNFYIIIKKIL GDIIFDYDYIDAREDEVIVNFKLLYGYAALLPEEEEKYKKFTKSIQRRAATIGGQDMN DYPLKMLIFNRARLVKNSKNRIPYGVELIQKYKRDSWIVFTENKKQAKDFNKIINKKG FKSGIYNTDLKDDERQENLEAFKSGKLDVLVSCTALDEGFDMPEADGAMILSASSSKR QRIQRMGRVLRITANKENALIVTVYSSKTEYEKLREESNRYKLEGVPIKWQQMSL" gene complement(102970..103728) /gene="trpC" /locus_tag="NT01SARS_0955" CDS complement(102970..103728) /gene="trpC" /locus_tag="NT01SARS_0955" /EC_number="4.1.1.48" /note="identified by match to protein family HMM PF00218" /codon_start=1 /transl_table=11 /product="indole-3-glycerol phosphate synthase" /protein_id="EJP71149.1" /translation="MMNILDEIVAKTKSKLEEKKQGLSLEELSSKIDFENLKETNFKK SLQNKAEAIIAEIKKASPSAGIISDDFDPVLKSKEYESFGASALSILTEEDYFLGNIQ YLMDVKAITSLPILRKDFIVDEYQIYESKLIGADCILLIASILNDEELKNFSEIAERL KLDYIIEVHDEEELQRVQHFSNAIIGVNNRNLKTFDVDINNSVALKKIFEGENIFIAE SGIKSKKDIEYLQQHNINVFLIGESLMKGDFFET" gene complement(103725..104732) /gene="trpD" /locus_tag="NT01SARS_0956" CDS complement(103725..104732) /gene="trpD" /locus_tag="NT01SARS_0956" /EC_number="2.4.2.18" /note="identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245" /codon_start=1 /transl_table=11 /product="anthranilate phosphoribosyltransferase" /protein_id="EJP71150.1" /translation="MKDFINKINNKEDLTLNEMQEAINLIMSGMSDDDDIESFLIGLN EKGVSETEVTAAAIVMKEKSLKFDIGDGSHIDTCGTGGTGLHTFNCSTASSFVAAAGG AKITKHGNKAISSKSGSADFLVQSGANINHEREKLISIFDKVGFVFLFAPLHHEAMKF VMPVRQKIAEKTIFNLLGPHTNPCSAKKQVLGVYDEKLVRMFSNVAKNLDMKHVMIVH GDDGLDEISICSETIVSELKDNKISEYKISPKEYGLNISSFDHIAANSSDESLLLVSN AFSGESSAVQDMIALNSGAALYVANVVESIGDGIEMAFDLMNNGKAAQKLADYVRVSN E" gene complement(104729..105295) /locus_tag="NT01SARS_0957" CDS complement(104729..105295) /locus_tag="NT01SARS_0957" /note="identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566" /codon_start=1 /transl_table=11 /product="anthranilate synthase component II" /protein_id="EJP71151.1" /translation="MIIVIDNYDSFTYNLVHYIGEFEQDIKVIRNDEMSVSEIIENNP SKIVISPGPCTPKEAGISVELIKTAEVPILGVCLGHQAIGAAFGGNIIKAPEVFHGKT SSIDHDGSLLFSEIEKSYDVVRYHSLIIDMKTLPSELNVTATLSDDKEIIMAVEHINR PIYGVQFHPESIDTNNGTKLIENFIKKI" gene complement(105292..106758) /gene="trpE" /locus_tag="NT01SARS_0958" CDS complement(105292..106758) /gene="trpE" /locus_tag="NT01SARS_0958" /EC_number="4.1.3.27" /note="identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564" /codon_start=1 /transl_table=11 /product="anthranilate synthase component I" /protein_id="EJP71152.1" /translation="MISKEEYIKFAENGFNIVPLVKTIEKDLDSPIKVFSRIKNKKNT FLLESIEGGEKWAQYSIIGLDCKDSIKVSDNKIEIKTALGTNLIECQEPLDELNKLIG EYKTPVLDGMPRFYGGYVGFFAYESAKYAENKINALQRKDSKFDVDMPDIYLVKSEKI IVYDNFNNSIQAIYNANPQQTSYEDALEIIDEIQNSIDHSGELEETSYSNTSGQLEFK SNFTKNEYMSSVNKIKEYIKEGDVMQVVLAQDFYNSFNGDSFKLYSALRQINPSPYMY YLNLDECEVVGSSPEILVRLEDSNITLRPIAGTRKRGANEEEDKNNEKDLLNDPKELA EHLMLIDLGRNDVGRVSEIGSVKLTEKMVIERYSHVMHIVSNVVGKLSKGLNFTDALK ATLPAGTLSGAPKIRAMEIINELEPSSRGIYGGAIGYISWNGNIDTAIAIRTAVIRDN KIHVGAGAGIVADSDPEKEWEECVQKSKVFLDAMEMIS" gene complement(106751..107197) /locus_tag="NT01SARS_0959" CDS complement(106751..107197) /locus_tag="NT01SARS_0959" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71153.1" /translation="MSKQYLNFVQKLFKYFIFLLFVSNLHASKVIDIKEYLSDIEIVS KYEDRKKGLMNRRSIPNDYGMLFIWPYERKQCMWMKNTYVPLSVAYIDIRGKIIEIYD MVPFSKDSVCSTKAAKYALEVNSGWFEEKDINIGDSIEVKKLFSND" gene complement(107157..107825) /gene="rpe" /locus_tag="NT01SARS_0960" CDS complement(107157..107825) /gene="rpe" /locus_tag="NT01SARS_0960" /EC_number="5.1.3.1" /note="identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163" /codon_start=1 /transl_table=11 /product="ribulose-phosphate 3-epimerase" /protein_id="EJP71154.1" /translation="MSDQKNIIAPSILASDFARLGEEVRNVLDAGADWVHFDVMDNHY VPNLTIGPMVCKALREYGIKEFIDVHLMIDPVDELAQSFIDAGADLISFHPEATKHIH RSIHAIKDKGCKAGLVYNPATPLHTLESVLEDLDLVLIMSVNPGFGGQSFIHSSLEKI AQVRKMIDESGKDVRLEVDGGINKDTIGLASEAGADTFVAGSAIFNTENYEQTISELR SKIV" gene complement(107829..108500) /locus_tag="NT01SARS_0961" CDS complement(107829..108500) /locus_tag="NT01SARS_0961" /note="identified by match to protein family HMM PF00483" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate guanyltransferase beta-A" /protein_id="EJP71155.1" /translation="MKVMILAAGYGKRLLPLTKETPKPLLKIGDKTLIQHNIEHLIKN DFTEFVINISHLGHMIENHVKEKFSNINIEFSKEDKPLGTGGGILNAIDLLGDENFLV MNSDIFHKIDIKNLPKEIDAAHLIGVPNPSHNQEGDFCIKDNNKVAIDEFNDLTWSGI SIINPIIFKEKNFRSDSFNIWDTVLPNYLNNGNVSAHKSNDLWIDVGTHERLKLANSL YNDQN" gene complement(108497..109453) /locus_tag="NT01SARS_0962" CDS complement(108497..109453) /locus_tag="NT01SARS_0962" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71156.1" /translation="MKEEEVINLSKKFNFNPLEVIPLKREASGREYWRIINDAKETII LCYLDPNEGDHENFINISNELKRNHISGVDIIHHDKQAGVTIQEDLGDKDLISIFNDD NKKELIERSIKLLIKLQESEIKNLEEFSKEDLINQMSLFDKVFCQKFLNLASDKSIND LISITIDKLYQHPWVNCHFDFERRNLVLDKNNHLTVIDYQDMKKGPIGIDMAGILVDH YFEADISNIKSFLNFFSTNVKSEYSDDACFEFTRWGCIQRNLRILGTLSDLYLTKDRS FRLKDMPLILKNLIKMIPEEHSSKLFLEQEVQPLLSKTVEQL" gene complement(109454..110311) /locus_tag="NT01SARS_0963" CDS complement(109454..110311) /locus_tag="NT01SARS_0963" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="short chain dehydrogenase" /protein_id="EJP71157.1" /translation="MSLKDKVIFISGGSRGIGLAMVKKAAEDGAKIAIAAKTAEPHPK LPGTIYTAADEIVEAGGEALPVICDIRNEDNVRDAINQTVDHFGGIDICINNASAIQL TNVTDTEMKRYDLMHQINGRGTYMVSKYCLPHLKKSNNPHILNLAPPLDMESKWFSGT VAYTMAKYTMSMCVLGMAEEFKEFGIAVNALWPRTAIATAAVQNHLGGDEIMKLSRNV DIMADSAYEILTKDSKEFTGNFCIDDIVLYESGVKDFSKYASVPFGELMPDFFVPEDT PLPDEIKNS" gene complement(110330..111070) /locus_tag="NT01SARS_0964" CDS complement(110330..111070) /locus_tag="NT01SARS_0964" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="oxidoreductase, short chain dehydrogenase/reductase family" /protein_id="EJP71158.1" /translation="MKDFSKFSAIIIGAGDATGAALTKKFASHGYKVCPARRPRSIEK VNKLADEINNSGGWAKGYGVDARDEDEIAKFFKEVEEEVAPIDVVIFNPGANVFFPIV DTTSRVFKKVWEMAAFAGFLTGREAAKYMTARNEGSIFFTGATASMRGGSGFSAFASA KFALRAVSQSMARELGPQGIHVAHFIIDGAIDTAFIKENFPDRYALKEKDGILQPDAI ADAYWFVHTQHRSAWTHELDLRPYMEKF" gene 111113..111715 /locus_tag="NT01SARS_0965" CDS 111113..111715 /locus_tag="NT01SARS_0965" /note="identified by match to protein family HMM PF01323" /codon_start=1 /transl_table=11 /product="dsba oxidoreductase" /protein_id="EJP71159.1" /translation="MIVDFIFDVASPNTYLAHKIIPQIEERTGAKFEYIPCLLGGIHK LSNNQPPFIAYADCKNKSDYQMIEIDRFVKQHSLTNYKFNSHFPPSTIQIQRGAIAAK ELGIFEDYFECVISAMWEQDKNISDVEVLKEVLKEGNLDVESIMEIVLSQDCKDKLIK NTDDAVNKGCFGVPTFFYDNQIFFGKDHLHQLEQYINSNK" gene 111764..114196 /locus_tag="NT01SARS_0966" CDS 111764..114196 /locus_tag="NT01SARS_0966" /note="identified by match to protein family HMM PF04453" /codon_start=1 /transl_table=11 /product="organic solvent tolerance protein" /protein_id="EJP71160.1" /translation="MKKITKILYLLVLIFNQNFLFSNILESDVFVENNTNSSCMIYQP YLGVVKDAESLDIKSDKFEITDEKVLILNDNVRIDFPEGILNAGKARIDQENGFINFK KGGELILKDYLFNSEEGIFDKNKLFVDFTNGETYINNRGFVISFKKLTGNLDNQITLE DISMTSCKDPKNGWQLNAESITLDDNTMRGYAKKVKVKAFDRTVLRIPYLPFATSQER MSGFLEPKISYSSDGLDFMIPYYRVLSETSDFTIALRNISDRGLGFEANSRNLHGNNN LRSIDFIYFNNDKEYENIYPSDSDSRWAFSINDSFGDKKNFWVDVDWSKSSDSLVLRD IPGDITSIGSQREQSLKQNVKINGVFNNFQVSVSQEGYQTLNPILTNGYKKSPSINLN YFKNFKNVSLHEYLNYTNFVADTIHGFFGIDKNNKFRSSIPNPVEGERIFYMLEISNS MNISGYQLNTSIGVRGIDFDIVDNKTNSNSVMVPTFKFDLSTLLIMKSGMQSHILKPR IFYGYVGHEEQDDNPVFDTYKLGMMNQVFNLNRFTGMDRIGDQNFYTLSMEYKRRQMN MNNISLKISQKFFLKDRKVFINNMSMNSMHSDMMSNTMNMGMMSNSMNMNTMSDSMDM GMMSMMNGDKDPIMIMAKWMPNMKTMFMASGSYSEEMKKFPMAGLTINHMFDKGKVGY AKRYTRMTGDFNQTLDYSEFFADLKIKDNVSFVAEVKRDDENSSNIESSVGIGFENCC FSFRILASDKNLSKYLDGYRPEAYQYLGDAWDDIIRIESKSRINFEFELKGLNSSFEK VSRFMNNSLLSH" gene 114203..115444 /locus_tag="NT01SARS_0967" CDS 114203..115444 /locus_tag="NT01SARS_0967" /note="identified by match to protein family HMM PF00639; match to protein family HMM PF09312" /codon_start=1 /transl_table=11 /product="chaperone SurA" /protein_id="EJP71161.1" /translation="MKKTFITTLLISSALLNAKIELLDRIAIIVDDGVVMESQINKAM AALEEGYREQNIQLPPKDVLLDQIKERLIIEELQLQLADRAGVKISDAELNSTFSRLA SNNQMSLEEFISFIETNGDSYEEVRETMRKEMRIQRIQRGRVNSNIEITEKEFEAFLA TDESLGELEPELQVRQILVKDKNIAERVINLIDEGSSFSELASEYSISSNASNGGLMD WRKAIDMPELFENALKDKSIGYVTEPLESGSGYHILKLEDKRGQFVQFEDQWNARHIL LIPSAIRSDDETKNQLQEIRQRVMDGEDFALLAKEFSEDPGSAKIGGDLGWMGLGVFT PTFEETMLNTEVGSISEVFESEFGYHFLEVLEKRNHELTDKLIEDRAYGMLYSRKFDE ELENTLRTMRAEAFVEFKDLD" gene 115441..116421 /gene="pdxA" /locus_tag="NT01SARS_0968" CDS 115441..116421 /gene="pdxA" /locus_tag="NT01SARS_0968" /EC_number="1.1.1.262" /note="identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase" /protein_id="EJP71162.1" /translation="MKKIIYSPGEPSGIGPDLIIKLSSSKLWENLKIPIVSIGDPKLF IDRAALLKKKIKIIELESLNQVSKNCKGLIQIIKVTKCSNTRPGKLYKSNAQYVLDNL TYSIKQTMQNEGTALVTGPLSKENIISIDKLFTGHTEYIKKITKSKDVLMMLASDQLR VALATTHIPLKNVSRTITKELIINKVKILNEDLKNKFNVKKPNIKVLGLNPHAGENGK IGKEEQDHIKPAIRELRKKKINVSMPISADTAFSKKSLKEADAYLGMYHDQVLPVLKT LSFGNSINITLGIPIIRTSVDHGIALDIAGTNKSDPSSLILAVKTAKKLI" gene 116421..117182 /gene="ksgA" /locus_tag="NT01SARS_0969" CDS 116421..117182 /gene="ksgA" /locus_tag="NT01SARS_0969" /EC_number="2.1.1.-" /note="identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755" /codon_start=1 /transl_table=11 /product="dimethyladenosine transferase" /protein_id="EJP71163.1" /translation="MRSRDIRRKYGQNYLTDKSVLFKMADAISPTSSDNFLEIGPGLG ALTEQINKDDINIIAIDIDSENTEILKNKFTGPANFQFLTDDILKYKIENDRQRIVGN LPYNISTQIILKLIDSCEKILDMHFLVQKEVAEKIAGKVGTKSWGKLAIKIAAFFDNE ILFDVPPEAFDIKPKVNSSFIRLMPNKNLKENINQKDNFFKLIDLAFSSRRKNIKNNL KSLSINWNEVDIDPTKRPEEISLDDYLLLSKVLVL" gene 117182..117982 /gene="apaH" /locus_tag="NT01SARS_0970" CDS 117182..117982 /gene="apaH" /locus_tag="NT01SARS_0970" /EC_number="3.6.1.41" /note="identified by match to protein family HMM PF00149; match to protein family HMM TIGR00668" /codon_start=1 /transl_table=11 /product="bis(5'-nucleosyl)-tetraphosphatase" /protein_id="EJP71164.1" /translation="MSHYVIGDVQGCYDELINLCSKIKFNPKKDTLIFAGDLVNRGPK SLEVLNFCLENKKSIKAVLGNHDFYLLYLIEHKKNNRSLKTILNANNISKIHKWLKKL PLLLKVKINGHNFWISHAGIPCIWDLKTAKKLSKEVQVALKEDSYNLLKNMWGDTPSK WNSKLVKYKRYRVIINYFTRMRFLDNKGALKLKKKNLKSEKNHIPWFKQTTHNLKKDE SIIFGHWAALEGKTNLDNIIGLDTGCVWGNKLTAIRLEDKKLYQVRRK" gene 117979..118992 /locus_tag="NT01SARS_0971" CDS 117979..118992 /locus_tag="NT01SARS_0971" /note="identified by match to protein family HMM PF01743" /codon_start=1 /transl_table=11 /product="tRNA adenylyltransferase" /protein_id="EJP71165.1" /translation="MKIYKVGGAVRDSLMGVKSSDNDWVVVGSSPEEMVSNGFKPIGK DFPVFLHPETNEEYALARTEKKTGTGYGGFTFYYGKDVTLEEDLSRRDFTINAIAQDH AGVIIDPFDGQNDIKNKLFRHVSDAFFEDPLRAIRLARFFSYDHLKDFDIDVSTIECI KKIVSSREIADISSDRIWSETERALSNSNPSKYFEKIISLNLLDPYFNKLTKSSCDSH NNKTLRWAELQINNDFELGSELPLPNDFKNIVEVCKIALKLNKDTNQDDLILLIDKIN FVRNFELINQLISLPHFSDNKDFISQLAKKIKTTDFSYLSNVSKENIEEEKIKIYKEI INS" gene 118995..119720 /locus_tag="NT01SARS_0972" CDS 118995..119720 /locus_tag="NT01SARS_0972" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] reductase" /protein_id="EJP71166.1" /translation="MNKTIFITGAAKRIGKEIALTFKELGWNIIIHYNSSKEAADDLA AEINNSNANSAVTVQGNLDVKEDVEKIISEVLDAFPSIDLLINNASTFYPTPIDDISE DHWEKLIGSNLKGPMFLIKGLKQKLKESNGSIINITDTNLSKGVANYSIYSAAKAGLE AITKGLARELAPEIKVNAIAPGAMLEPPDVTWTEEQKNKVIDTIPLKRMGSEKDIAET VKFLADSEYITGQIIKVDGGRSL" gene 119720..120775 /locus_tag="NT01SARS_0973" CDS 119720..120775 /locus_tag="NT01SARS_0973" /note="identified by match to protein family HMM PF01636" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase family member 10" /protein_id="EJP71167.1" /translation="MKPLDDAKFSGTKDVDERLKIDSANLQPWIDEYVPNAGKIKAIE QFKGGQSNPTYKIITESKNLVLRRKPPGKLLPSAHAVDREYKVITALYETDVPVPKTY GLCEDDDVAGTAFFVMDFLDGDLFWDPMIPSMTNRDRTEIYKNKNKTLAKLHSVDYKK IGLEDYGKPGNYVARQVSRWSKQYRASETDNIEAMNNLIDWLPKNIPDDDETTIVHGD YRLDNMILKNNEVIGILDWELSTLGHPIADFSYHCLSWRTQEAFWDEAKLKELGIPSE REYMEMYCENSGKDLSKNWEFYMAFNMFKIAGILQGILGRVRDGTAASKHAEERGNMV FPLSEAAWSTIEENFLK" gene complement(120781..121386) /locus_tag="NT01SARS_0974" CDS complement(120781..121386) /locus_tag="NT01SARS_0974" /codon_start=1 /transl_table=11 /product="PepSY domain protein" /protein_id="EJP71168.1" /translation="MKTKRFVRNFHRYLSIFVSIQLLLWTVSGIYFAYNKIELVRGEQ YRLPKDIEYRIFDRLGTSVIETIEEGKKTYKTYPEGDAIKPLTEEEAIKITAQKTTLN PIDVSLVTEFYPGDEYRGDLPAYKVITDTKDGINVYVGYMTGDIGSIRSDSWRIWDFL WSLHIMDYRERDNINNILLQILSVLALVTSISGITLFFVKR" gene complement(121386..121763) /gene="folK" /locus_tag="NT01SARS_0975" CDS complement(121386..121763) /gene="folK" /locus_tag="NT01SARS_0975" /EC_number="2.7.6.3" /note="identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498" /codon_start=1 /transl_table=11 /product="2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase" /protein_id="EJP71169.1" /translation="MKYFLSLGSNINAEKNLEFALEELKKILSNIQSSSIHQTKAEGF EGDDFLNSVVCGDSELDIKNLNKKLKLIEDNAGRNRNAPKFSARTLDIDIVLQIDDND DILFESDEIQKYEFVSAPLKELI" gene complement(121763..122110) /gene="folB" /locus_tag="NT01SARS_0976" CDS complement(121763..122110) /gene="folB" /locus_tag="NT01SARS_0976" /EC_number="4.1.2.25" /note="identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="EJP71170.1" /translation="MKDIIYIKDLRVKTIIGIFDWERKVKQEVSIDMEFPFDCKRAAK TDSIEDTIDYKTICKGVIKFVEESSFQLQESLAEGIASLVKDTYGVESIKLRVSKPGA LRGAKDVGLIIHR" gene complement(122107..123111) /locus_tag="NT01SARS_0977" CDS complement(122107..123111) /locus_tag="NT01SARS_0977" /note="identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329; match to protein family HMM TIGR03723" /codon_start=1 /transl_table=11 /product="putative glycoprotease GCP" /protein_id="EJP71171.1" /translation="MKTLGIETSCDETAIAIYDSKDGIIGESVHSQMDMHAEYGGVVP ELASRDHCLKIVDVLEDALGNLSLDSIDQIAYTSGPGLLGALLIGESFAQGLSTALNI PLIPINHLEGHLMSPMMEFPEIKMPFICLLVSGGHSMIVDVKDKGQYEIIGQSQDDAV GEAFDKVAKLLDLPYPGGPYIERLALEGRSDAFDFPRPMINSDDLNMSLSGLKTSVLY TVQKISNMTQEIKSDIAASFQQAISDVLVAKIKKSIETTGRKEVIIAGGVAANKFLRS EFKKLEESHNITVYYPDMKYCGDNAAMIAFVGSMMKPSVENDRSSSARARWPLDELKA " gene 123161..123376 /gene="rpsU" /locus_tag="NT01SARS_0978" CDS 123161..123376 /gene="rpsU" /locus_tag="NT01SARS_0978" /note="identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030" /codon_start=1 /transl_table=11 /product="ribosomal protein S21" /protein_id="EJP71172.1" /translation="MPSIIIKDTEHFDIGLRKFKRACEKAAIVPEIRAREFYEKPTEK RKRLMAAAVKRAKKSNRKFSFPRQRSR" gene 123379..123822 /locus_tag="NT01SARS_0979" CDS 123379..123822 /locus_tag="NT01SARS_0979" /note="identified by match to protein family HMM PF09424" /codon_start=1 /transl_table=11 /product="GatB/Yqey domain protein" /protein_id="EJP71173.1" /translation="MALLSDIKNDLKQAMLDKNDLVRDTIRMFLSEVQRFEIDNKEEV DDAKALQIINKMIKQRNDSISQFKEGGREDLADKEQQEVEILSKYKPEQLSEEEIAEK VKSAIQESGAESMQDIGKVMGVLKSALAGSADMGLVSKIVKDQLA" gene 123840..124544 /gene="rph" /locus_tag="NT01SARS_0980" CDS 123840..124544 /gene="rph" /locus_tag="NT01SARS_0980" /EC_number="2.7.7.56" /note="identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966" /codon_start=1 /transl_table=11 /product="tRNA nucleotidyltransferase" /protein_id="EJP71174.1" /translation="MKRNQDRSNNQLRDITIEPNINIHAEGSVLISFGNTKVICNASI ENNVPRWMKNSDEGWVTGEYGMLPRSTNERMSREAARGKQSGRTQEIQRLIGRSLRQA VNLKYLKGKTINVDCDVIQADGGTRTASITGGCVALFLAIKNHHDDQRAIKSFVAAVS MGIKDGQVLLDLDYDEDSTADTDLNIVMNDKDELIEIQGTAEDAPFSKKELDDMLVMG SQAIADIIKKQKACIE" gene 124545..125183 /gene="pyrE" /locus_tag="NT01SARS_0981" CDS 124545..125183 /gene="pyrE" /locus_tag="NT01SARS_0981" /EC_number="2.4.2.10" /note="identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336" /codon_start=1 /transl_table=11 /product="orotate phosphoribosyltransferase" /protein_id="EJP71175.1" /translation="MKDYQKSFLNLAIESQALQFGEFTLKSGRQSPYFFNAANMLKGS NLFQLAQCYVEAIIDNNIEFDCIYGPAYKGIFLGSIVATVFSEQGKNYPVSFNRKEAK DHGEGGNIIGANPSGNVLIIDDVLSAGTAGRESINSIINHNATPSSFVVGLDRQEKGV SDESASKELENEFNMNVTSIVNLDSLIAYVSNESELTEYLEGLNNYRETWGA" gene 125184..125795 /gene="ribE" /locus_tag="NT01SARS_0983" CDS 125184..125795 /gene="ribE" /locus_tag="NT01SARS_0983" /EC_number="2.5.1.9" /note="identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187" /codon_start=1 /transl_table=11 /product="riboflavin synthase, alpha subunit" /protein_id="EJP71176.1" /translation="MFSGIVQGTGKISKIISKKNHITLEISAPKNFNKNLKKGASVSV NGICLTSLDNGKKNLKFDVINETLSKTNIGKARKGSLVNLERSITASTEIGGHLMSGH VHFAGKIEKIITKNTNKDIQIKFPKKYRQYIFEKGYIGVNGCSLTLGKVNNDSFYVHL IPETLKITNLSDLKKGSFVNIEIDQNTIAIVETVKNSLAAQKS" gene complement(125775..126680) /gene="pyrB" /locus_tag="NT01SARS_0982" CDS complement(125775..126680) /gene="pyrB" /locus_tag="NT01SARS_0982" /EC_number="2.1.3.2" /note="identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670" /codon_start=1 /transl_table=11 /product="aspartate carbamoyltransferase" /protein_id="EJP71177.1" /translation="MANNLLSINDLSKKDILDLIEFSNNFIDDEGNFRKENLFPDKIV ANVFCEPSTRTKSSFAIAANNLGCSVLDFDIENSSVQKGESIFETVDALNLMGVDLCV LRHPESVIRELAECLPKMVFINAGEGSISHPTQALLDIKTIIDHKENLDGLNIVIVGD LDHSRVTSSFVEGVSNFDLGSLTFCGHPEMCTKYQNPKIGKYESHLESALENADVVMA LRIQYERFEKELNLDLETYKSEYQLSSEKLESAKGDAIVMHPGPVNYVEITEAVYDSE NSVIRQQVANGVAIRMAVLSRFLGS" gene complement(126673..127059) /locus_tag="NT01SARS_0984" CDS complement(126673..127059) /locus_tag="NT01SARS_0984" /note="identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004" /codon_start=1 /transl_table=11 /product="putative endoribonuclease L-PSP" /protein_id="EJP71178.1" /translation="MTKEIISTKNAPQAIGPYSQAVKAGNLIFISGQVPLNPKTGDLV TESIEDQARQVLDNVKSICEAAGCSLDDIVKISIFLTDLSNFAVVNDMMKEYFSEPYP ARATVEVSGLPLGVNVEIEAIVLING" gene complement(127095..129278) /gene="relA" /locus_tag="NT01SARS_0985" CDS complement(127095..129278) /gene="relA" /locus_tag="NT01SARS_0985" /EC_number="2.7.6.5" /note="identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691" /codon_start=1 /transl_table=11 /product="GTP diphosphokinase" /protein_id="EJP71179.1" /translation="MSEHVLPNILLENFNEANLLRLPAKFYKSAKQYLNKDEIKKIQT AYSLAFYAHDGQDRMDGSKYITHPLAVATILLDLKMDPDSICAALMHDVLEDCDVTKK NLEDLFGNDVANIVDGVSKLGKLDITSRSDRDANNLQKMMLAMSKDVRVILVKICDRL HNMRTIEHLPRSKQIMKSKETIELYGPLALRIGMQEIRSELEDLAFRCIHPLRASMLE SAINKSSGGRKRIISKIRKELKRKLKSNGIEQVGVKGREKNIYSIYRKIKSKHKPFSE ILDVYGFRILVDSIDECYRSLGIIHNYFSPIENRFKDYIAIPKSNGYQALHTSLLALN AFPIEVQIQTRNMAEIANFGIAAHWQYKTDDKKRGSELRASRWLLGLADLQKKTNDPS EFAQSIKTDLSSEEVFLFSPKGDIYALRRGSTPIDFAYEVHTDLGDTIIGCKVNRSEV PLNIELESGQTVEIITSKKEPYLDPSWLNYVATSKARSAIRSRLRKQKASDARKAGKV MLETELKRAGSSLKEYRGNSLKKILDSIGVTSLNKLLTDLGLGKRTGSIIAERFYSGL QIREGIKEPKPVLILDNKIESVTVRFAKCCFPVYGDDVVAHSDTERGMVIHNQKCKQV KPFLNKDPRYMPAIWGENKKEHLYKAKIDVSTQDKVGVLSDLGSVFAKSGINIGSVNT KTIDKKFSGFEIQIEVKNKEELKSIMQKVRSLKFTTSCKRNINDK" gene complement(129299..129568) /gene="rpoZ" /locus_tag="NT01SARS_0986" CDS complement(129299..129568) /gene="rpoZ" /locus_tag="NT01SARS_0986" /EC_number="2.7.7.6" /note="identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, omega subunit" /protein_id="EJP71180.1" /translation="MARITVEDCLEKIPSRFDLILMASKRARQLSTTSRDPLVEWDND KPTLVALREIEEGLLDRETLEKTLEEDVLLDEFSAPSNKEDENIG" gene complement(129612..130232) /gene="gmk" /locus_tag="NT01SARS_0987" CDS complement(129612..130232) /gene="gmk" /locus_tag="NT01SARS_0987" /EC_number="2.7.4.8" /note="identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263" /codon_start=1 /transl_table=11 /product="guanylate kinase" /protein_id="EJP71181.1" /translation="MLNDLKKGELIVFAAPSGAGKSSLIKEIISNNENIELSVSATTR SPREGETHGKDYFFITDNEFNDLKKKDAFIESADVHGHQYGTLKAFVEEKLENNISVV LDIDVQGFIQISNSIKEVISIFIIPPSLDELKKRLILRGLDADDVINRRMENAIKELK HAKYFDYIVLNDDFNRAFNDITSIIFDKNYEYNETYNKNILKDLLD" gene complement(130222..131070) /locus_tag="NT01SARS_0988" CDS complement(130222..131070) /locus_tag="NT01SARS_0988" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71182.1" /translation="MISSMTGFGLSESFDKTSNISIEIRGVNHRFLELSIKSNNLGND LEDFIREAISKNINRGKIEVKIKAKSSSKTKYDINKKLLRMLESSLKEALGNRVDLNF SDIKDVSGIFNIETSQSINKKLIKNNFNTALKEFINSRFKEGKKIENVLSKKTKSIEK IARSIQNMEKKTLNKRIKNYKNKIKNLIEDFDETRLDQEVAMLALKHDISEELDRIFF HTKTINEELTKKISSGKKIDFILQELFRESNTLTVKIDDSKLKNYALDMKLLIEEMRE QTQNVE" gene complement(131116..131406) /locus_tag="NT01SARS_0989" CDS complement(131116..131406) /locus_tag="NT01SARS_0989" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71183.1" /translation="MKGDDFRSKTLVKYERNQIKNYGNNLIILRFAGLYETISERNFA NYLHRNNAANIIKFFIENEFYSNNTRYLIVLRIEMINRVIFQIEIEEFRFYF" gene complement(131412..133469) /locus_tag="NT01SARS_0990" CDS complement(131412..133469) /locus_tag="NT01SARS_0990" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03030; match to protein family HMM TIGR01104" /codon_start=1 /transl_table=11 /product="V-type H(+)-translocating pyrophosphatase" /protein_id="EJP71184.1" /translation="MDNLIIPPALGILGMVMAFVVYKLVMKYPDGEDNVKKIGDQIHA GALAFMKTEYKYLSIFIAVIVLLAWYALGPYTAISIVVGAICSSVAGFIGMYAATKAN VRTATAAQKDGPAAALSVSFYGGSIMGLCVASLGLIGLGGLYYFYIPAEIDPHKLEGF AMGASVVALFSRVGGGIFTKSADVGADLVGKIEAGIPEDDPRNPGVIADNVGDNVGDV AGMGSDIFESYCGSMIASIAIAYTLGNQDMMMLPLALAATGLIASIIGIFIVKLQSAK APASALRSGTLLAPVIFVAMAYFIINSFDGVGMNVWWCVIAGAVGGVLIGLITEYYTG GGPVKKIAESGETGSATVMISGLSVGMQSVVIPIVILAGIILTSTQLSGIYGVGIAAV GMLATVGITMAIDAYGPVADNAGGIAEMSGMGEEVREITDSLDELGNTTAAIGKGFAI GAAALAALAIISAFSAVVGVANPEFSLALTEPIVLVGMFIGVCIPFLVSSITMTAVGD AAFEMINEIRRQFREITGLMEGTAEPDSEKCVEIATKAALKKMMLPGVIAVSMPAIVG FGLGAQALGGMFAGGLLGCVSLALMMANAGGAWDNAKKYVEKGNLGGKGSDTHAAAVV GDTVGDPFKDTSGPSMNILXXXXXXXSANVFRLSSGLSYKKFITVSSTRVYGKNKSGI FMN" assembly_gap 131521..131540 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(133535..134791) /locus_tag="NT01SARS_0991" CDS complement(133535..134791) /locus_tag="NT01SARS_0991" /note="identified by match to protein family HMM PF00375" /codon_start=1 /transl_table=11 /product="excitatory amino acid transporter" /protein_id="EJP71185.1" /translation="MSQLDPPKNLTRNVLVGMFSGVLLASIFFYFQDSISQSVFLGIE KYLFNLGGQIFKNLLLLIVVPLVFFSLVSGISSLSNMVKLGSIASKTVLLYLLTTAFA VVIAIFFGWVFNISGYEGEVTSFNAPSGEASLYDTVLKVFPNNIFGAFVENNMLGIVF ISILFGIALNLTDNLTDNLSKNFERLNIVFMKIVLIIMSFAPIGVFCLMGSYVMDKGL NIFGDLIQYVLILIFVLLFHLFFTYSLVLKIFANLNPIIFFKKMRNVALFAFTTSSSA ATIPVTLRTVTDELGVKKDVSSFVIPVGATINMDGTAIMQGLATMFIASTVGVDLSMI EYIQIVLLAMVASIGAAAVPSAGTITLALILSSLGLPLDAIGLILAVDRILDMIRTSV NVSGDAAVACVVANSEELLDKNIFNK" gene complement(134788..134961) /locus_tag="NT01SARS_0992" CDS complement(134788..134961) /locus_tag="NT01SARS_0992" /note="identified by match to protein family HMM PF00301" /codon_start=1 /transl_table=11 /product="rubredoxin" /protein_id="EJP71186.1" /translation="MKFKKWECIVCGLIYDEELGWPDDGIEPGTAWEDVPEDWLCPEC GVGKEDFDMIEIT" gene 135032..135523 /locus_tag="NT01SARS_0993" CDS 135032..135523 /locus_tag="NT01SARS_0993" /note="identified by match to protein family HMM PF04345" /codon_start=1 /transl_table=11 /product="putative chorismate-pyruvate lyase" /protein_id="EJP71187.1" /translation="MKLKQKSSWINYKEMAEQVSDEIIKSWLTENGPITKRISAKEDF ELNLIRDEIDEVDETDKKYLGDDIGEIKVREVILFGNKVPKVYAKSLIPVKTIEKGFS KLGSLGTKPLGDILFEKDIFNKIDVIYSTFSNEINIFWGRKTKYLVKDLPFSVMEIFL IDQ" gene 135520..136374 /locus_tag="NT01SARS_0994" CDS 135520..136374 /locus_tag="NT01SARS_0994" /note="identified by match to protein family HMM PF01040" /codon_start=1 /transl_table=11 /product="4-hydroxybenzoate octaprenyltransferase" /protein_id="EJP71188.1" /translation="MIDKIRSFIELARLDKPIGIYLLLWPSLLGYVLAGINSELKLKN FLIVVIGSIIVRSCGCVINDISDYKIDKLVKRTLNRPLALGSISLIEAWIFFLLLAIS SLVLLFQTNPLTIKIAIFFAFLIMLYPLTKRFFVAPQFILGITFGSGSIIAYTLESNI FTMSLAILYSGIIAWIISFDTYYALEDKDDDERIGVNSTAILWGNNSIIYSKILHIFF YVCLLTIGIINSFSYLFYIFFFLLIYLFIHQAKIIKKKKYIEAFKINNWIGIVALLSF VFEIIYLS" gene 136375..136989 /locus_tag="NT01SARS_0996" CDS 136375..136989 /locus_tag="NT01SARS_0996" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71189.1" /translation="MNKNLNFIDSFDSIDESQFNKLIRKDDAPFIQYSFLKALENSGC VGRDFGWTPKHLIKSNKNILSGFLPIYIKNNSHGEFVFDHSWSYALNRAGRNYYPKLL TAIPFTPCETRKIITESDSDEYIEKVVDLMEEKNIETWHVLYPDSNLKELFLKNNLIE RFGYKFIWRNKGYEGFDDYLSIXXXXXXXNIFATIFCLEKDFLS" assembly_gap 136922..136941 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(136955..137086) /locus_tag="NT01SARS_0995" CDS complement(136955..137086) /locus_tag="NT01SARS_0995" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="EJP71190.1" /translation="MANNLLSINDLSKQDILDLIEFSNNFIDDQGNFRKENLFPDKK" gene complement(137079..137549) /locus_tag="NT01SARS_0997" CDS complement(137079..137549) /locus_tag="NT01SARS_0997" /note="identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004" /codon_start=1 /transl_table=11 /product="putative endoribonuclease L-PSP" /protein_id="EJP71191.1" /translation="MINSKILSIFVFTISITSILIFSQEPIKMTKEIISTENAPQAIG PYSQAVKAGNLMFISGQIPLDPNTGDLVSESVEDQAKQVLNNVKSICEAAGHSLDDIV KISIFLTDLSNFAVVNDVMKEYFSEPYPARATVEVSGLPLGVNVEIEAIVLING" gene complement(137539..139722) /gene="relA" /locus_tag="NT01SARS_0998" CDS complement(137539..139722) /gene="relA" /locus_tag="NT01SARS_0998" /EC_number="2.7.6.5" /note="identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691" /codon_start=1 /transl_table=11 /product="GTP diphosphokinase" /protein_id="EJP71192.1" /translation="MSEHVLPNILEDNFKEANLVKLPNKFYKSAKQYLNKEDLKKIQK AYSVAFYAHDGQDRMDGSKYITHPEAVANILLDLKMDPDSICAALMHDVIEDSDVSKK NLINLFGEDVAEIVDGVSNLGKIDITSKTDRDANNLQKMMLAMSKDVRVILLKICDRL HNMRTIDHLPRAKQIKKSKETIELYGPLALRIGMQDIRSELEDLAFRCIHPLRASMLE SAINKSSGGRKKIITKIRKELKRKLKSNGVENVGVKGREKNIYSIYKKIKSKHKPFSE ILDVYGFRILVNSIDECYRSLGIIHNYFSPIENRFKDYIAIPKSNGYQALHTSLLALD AFPIEVQIQTRNMAEIASFGIAAHWQYKTKDKATGSELRASRWLSGLADLQKKSNDPS EFAQSIKTDLNSDEVYLFSPKGDIYALRKGSTPIDFAYEVHTDLGDTIIGCKVNRTEV PLNIELETGQTVEIITSKKESYLDPSWLNYVTTSKARSAIRSRLRKQKSSDARKAGKV MLETELKRAGSSLKQYRGSALKKILDSIGVTSLNKLLTDLGLGKRTGSIIAERFYSGL QIREGIKEPKPVLILDNKIESVTVRFARCCYPVYGDDVVAHSDTERGIVIHHKKCKQV MRFINKDSRYLPAIWGENKKDHLYKVKLDVNTEDKVGVLSDLGSVFAKSGVNIGSVNT KTIDKKFAGFEILIEVKNKDELKNIMQKVRSLKFTTSCKRNINDK" gene complement(139743..140012) /gene="rpoZ" /locus_tag="NT01SARS_0999" CDS complement(139743..140012) /gene="rpoZ" /locus_tag="NT01SARS_0999" /EC_number="2.7.7.6" /note="identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, omega subunit" /protein_id="EJP71193.1" /translation="MARITVEDCLEKIPSRFDLILMASKRARQLSTTSRDPLVEWDND KPTLVALREIEEGLLDQKTLEQTLEEDLLLDEFSIPNNKEDDNLG" gene complement(140056..140676) /gene="gmk" /locus_tag="NT01SARS_1000" CDS complement(140056..140676) /gene="gmk" /locus_tag="NT01SARS_1000" /EC_number="2.7.4.8" /note="identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263" /codon_start=1 /transl_table=11 /product="guanylate kinase" /protein_id="EJP71194.1" /translation="MLNDLKKGELIVFAAPSGAGKSSLIKEIISNNENIELSVSATTR SPREGEIHGKDYFFISDNEFNNLKTKEAFIENASVHGYQYGTLKSLVEEKLNNNIRVV LDIDVQGYNQIAASVENIISIFIIPPSLDELRKRLLLRGLDTEDVIEKRLINAKNELK YAKSFENIVLNDDFNRALEEISSIILSKDYEYNGTDIQNILKNLLD" gene complement(140666..141514) /locus_tag="NT01SARS_1001" CDS complement(140666..141514) /locus_tag="NT01SARS_1001" /note="identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255" /codon_start=1 /transl_table=11 /product="putative YicC protein" /protein_id="EJP71195.1" /translation="MISSMTGFGLSESFDKTSNISIEIRGVNHRFLELSIKSNNLGND LEDFIREAISKNINRGKIEVKIKAKSSSKTKYDINKKLLRMLESSLKEALGNRVDLNF SDIKDVSGIFNIETSQSINKKLIKNNFNTALKEFINSRFKEGKKIENVLSKKTKSIEK IARSIQNMEKKTLNKRIKNYKNKIKNLIEDFDETRLDQEVAMLALKHDISEELDRIFF HTKTINEELTKKTSSGKKIDFILQELFRESNTLTVKIDDSKLKNYALDMKLLIEEMRE QTQNVE" gene complement(141547..142221) /locus_tag="NT01SARS_1002" CDS complement(141547..142221) /locus_tag="NT01SARS_1002" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71196.1" /translation="MKKNVLIIGFGDIAKRISHIIKDNEYELYPISRGNHKSDIKNYI KWDWLSKEIPKLDITEYDSIIFIPKPSSFDEDGYKKGFINSSENVFRLTSELSYKKFI TISSTRVYGNNKSGIFTESDPLSEDDYRSKTLVNYENNQIKNYGKNLIILRFAGLYQT VTERKFANYLHRNNAANIIKFFIENEFNSEEHEIFNCAEDRNDEQGNISNSKLKSLGF IFDEYD" gene complement(142288..144270) /locus_tag="NT01SARS_1003" CDS complement(142288..144270) /locus_tag="NT01SARS_1003" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03030; match to protein family HMM TIGR01104" /codon_start=1 /transl_table=11 /product="V-type H(+)-translocating pyrophosphatase" /protein_id="EJP71197.1" /translation="MDNLIIPPALGILGMVMAFVVYKLVMKYPDGEDNVKKIGDQIHA GALAFMKTEYKYLSIFIAVIVLLAWYALGPYTAISIVVGAICSSVAGFIGMYAATKAN VRTATAAQKDGPAAALSVSFYGGSIMGLCVASLGLIGLGGLYYFYIPAEIDPHKLEGF AMGASVVALFSRVGGGIFTKSADVGADLVGKIEAGIPEDDPRNPGVIADNVGDNVGDV AGMGSDIFESYCGSMIASIAIAYTLGNQDMMMLPLALAATGLIASIIGIFIVKLQSAK APASALRSGTLLAPVIFVAMAYFIINSFDGVGMNVWWCVIAGAVGGVLIGLITEYYTG GGPVKKIAESGETGSATVMISGLSVGMQSVVIPIVILAGIILTSTQLSGIYGVGIAAV GMLATVGITMAIDAYGPVADNAGGIAEMSGMGEEVREITDSLDELGNTTAAIGKGFAI GAAALAALAIISAFSAVVGVANPEFSLALTEPIVLVGMFIGVCIPFLVSSITMTAVGD AAFEMINEIRRQFKEISGLMEGTAEPDSEKCVEIATKAALKKMMLPGVIAVSMPAIVG FGLGAQALGGMLAGGLLGCVSLALMMANAGGAWDNAKKYVEKGNLGGKGSDTHAAAVV GDTVGDPFKDTSGPSMNILINVMAIVSLVIAPLLSI" gene complement(144337..144459) /locus_tag="NT01SARS_1004" CDS complement(144337..144459) /locus_tag="NT01SARS_1004" /codon_start=1 /transl_table=11 /product="glutamate-aspartate symport protein" /protein_id="EJP71198.1" /translation="MAVDRILDMIRTSVNVSGDAAVACVVASSEELLDKNIFNK" gene complement(144449..144811) /locus_tag="NT01SARS_1005" CDS complement(144449..144811) /locus_tag="NT01SARS_1005" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="proton/sodium-glutamate symport protein" /protein_id="EJP71199.1" /translation="MSQLDPPKNLTRNVLVGMFSGVLLASIFFYFQDSISQSVFLGIE KYLFNLGGQIFKNLLLLIVVPLVFFSLVSGISSLSNMVKLGSIASKTVLLYLLTTAFA VVIAIFXXXXXXXXYLGG" assembly_gap 144466..144485 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(144808..144981) /locus_tag="NT01SARS_1006" CDS complement(144808..144981) /locus_tag="NT01SARS_1006" /note="identified by match to protein family HMM PF00301" /codon_start=1 /transl_table=11 /product="rubredoxin" /protein_id="EJP71200.1" /translation="MKYKKWECIVCGLIYDEELGWPDDGIEPGTAWEDVPEDWLCPEC GVGKEDFDMIEIT" gene 145052..145543 /locus_tag="NT01SARS_1007" CDS 145052..145543 /locus_tag="NT01SARS_1007" /note="identified by match to protein family HMM PF04345" /codon_start=1 /transl_table=11 /product="putative chorismate-pyruvate lyase" /protein_id="EJP71201.1" /translation="MKLKQKSSWITYKEMMNKVKNDSVKSWLTENGPITKRISANEDF ELSLIRDEIDKVDEMDKKYLDNEVGDIKVREVILLGNKIPKVYAKSLIPVNTIENGFS KLGSLGTKPLGDILFEKNIFNKIEVIYSTFSDEISIFWGRKTKYLVKSLPFSVMEIFL IKE" gene 145540..146394 /locus_tag="NT01SARS_1008" CDS 145540..146394 /locus_tag="NT01SARS_1008" /note="identified by match to protein family HMM PF01040" /codon_start=1 /transl_table=11 /product="4-hydroxybenzoate octaprenyltransferase" /protein_id="EJP71202.1" /translation="MINKIYSFVEIARLDKPIGIYLLLWPSLLGYVLAGINSELELKN FLIVVFGSILVRSCGCVINDISDYKIDKLVKRTLNRPLALGSISLIEAWLFFLALSVM SLLLLFETNSLTIKISIFFAFLIILYPLTKRFFVAPQFILGITFGSGSIIAYSLESNI FSMSLAILYSGIIAWIISFDTYYAMEDKNDDEQIGVNSTAILWGNNSIIYSKILHIFF YMCLLTVGLINSFSYLFFLFFFILIYLFFHQSKIIKEEKYIEAFKINNWVGIVALASF TFEIIYLG" gene 146395..147531 /locus_tag="NT01SARS_1009" CDS 146395..147531 /locus_tag="NT01SARS_1009" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71203.1" /translation="MSTNLNFVDNFDSIDEAQFSKLIRKNDAPFIQYSFLKALENSGC VGRDLGWTPKHLVKSNENVLSGFMPMYIKNNSHGEFVFDHSWSYALNRAGRNYYPKLL TAIPFTPCETRKIITESDANEYVEKIIEFMEEKNIESWHVLYPDADLKELFLENKLIE RFGYKFIWKNKEYKTFYDYLNIFKSRQRKNIKNERKKISDLNITFQIKESDSLTLEDW EEFFKFYKNTYEERLQRPYLNIDFFKEIHKFKKILKPVIFFAVHDDKKIAGSLCFIGN DTLYGRHWGSSFNIDSLHFETCFYQGIEFCINKKIKYFDPGVQGEHKIRRGFEPKRTS SFHYIKENDFRNAIIEFCEKEEVEINRYLKACERYTPFNKEYKI" gene 147534..147956 /locus_tag="NT01SARS_1010" CDS 147534..147956 /locus_tag="NT01SARS_1010" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71204.1" /translation="MVKSLPKTSHQLAVCEANFLRLKKILNNFSVSKYLFETINPDSS SNPISFSVIHRTKHTLIIEAKQKIKLKKMESLIIRIQISLDAKLAEVISFQGERAVPY FMKVLKTQSRDEKIQQNRFLTEWLENIFANGINPQFKI" gene 147956..148528 /locus_tag="NT01SARS_1011" CDS 147956..148528 /locus_tag="NT01SARS_1011" /note="identified by match to protein family HMM PF05728" /codon_start=1 /transl_table=11 /product="putative esterase YqiA" /protein_id="EJP71205.1" /translation="MVKTILYFHGFASSSDSDKAKIIKSYISKISKKIKIFTPDLSNN FKEANNQITKLIDENEKDFVFMGSSLGGYYANFFGSINKSKVILINPAIPPLKGFEEY LGENENYSTGEKFIVTKDDIKFLRSLVTKKFNNQKNTLVFLESGDEVLNYVEAAKYFL GSNIDITYGGSHSYESITNKLEKIVSFIEI" gene 148673..149644 /locus_tag="NT01SARS_1012" CDS 148673..149644 /locus_tag="NT01SARS_1012" /note="identified by match to protein family HMM PF00120; match to protein family HMM PF03951" /codon_start=1 /transl_table=11 /product="glutamine ligase 2" /protein_id="EJP71206.1" /translation="MKTYEYIWLDGYQPEPSMRSKVKATRDETPPEWSFDGSSTQQAE GGSSDCLLLPVQTYENPNGHDLVMTQVQAADHTTHPSNFRAAAAEVVTDEWWFGFEQE YFFTDPETGEPLGWENGEPGPQGPYYCAVGAGNVSGREVSDAHLMACLDLGIELTGTN AEVAIGQWEYQCFGKGIKAADDLWVSRYMLYKIAEEFGVGVNIHPKPKTGDWNGSGMH TNFSNEAMRTGGSEELYSSICDKLGEVHEEGIASYGSDNDMRLTGLHETQSIEKFSYG VSDRGASIRIPVATVENGWNGYLEDRRPASNADPYKILSHIVGTLSK" gene 149696..150778 /locus_tag="NT01SARS_1013" CDS 149696..150778 /locus_tag="NT01SARS_1013" /note="identified by match to protein family HMM PF00512; match to protein family HMM PF02518" /codon_start=1 /transl_table=11 /product="nitrogen regulation protein NtrB" /protein_id="EJP71207.1" /translation="MKMNTEKLSFLNQLETEIIILDRELFIIWLNDSALNKGWVLNSK KDKNLITDQFSEETNGALINLLKKTIEKNGAKTKRDFEIITAADTKRTIDLTVSWNNE NECLILEILCVDNLNKIIDSTKTFSTQKIAANLARTLAHEVKNPLSGIRGSAQILSKK LTDDYSEKFLKIIIDETDRLNSIVTKILTPPSKPNLSMFNIHSALEKVYALAEADKEN KINLIRDYDPSIPEINGDENLFVQAILNIVKNAQQAIESIEEPNITIKSRIEYGKPIN GVVHQTVCSIEIIDNGPGIPQELHDQVFFPMVSVKENGSGLGLTIAQDIIRIHGGGII FRSNPGETIFAIQIPIKIEDKEAKIA" gene 150771..152147 /gene="ntrC" /locus_tag="NT01SARS_1015" CDS 150771..152147 /gene="ntrC" /locus_tag="NT01SARS_1015" /note="identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01818" /codon_start=1 /transl_table=11 /product="nitrogen regulation protein" /protein_id="EJP71208.1" /translation="MHNIWIADDDEAIRLVLEESLSSAGFKTKSFSSGDDLVSELESS EPDLIITDVQMPGMLGYDLLKHITNNYEDLPVIVMTAFADMQAAVESFGGGAFEYMPK PFDLEDAIKIVERALEEKPKTKGLKKDTKLDIIGESQAMQNVFRAIGKLSNTIATVLI QGESGTGKELIAKSLHKNSPRHDMPFIALNMADIPKELVESELFGHEKGSFTGAVDKR IGRFEQANGGTLFLDEIGDMPLDSQTRLLRVLSNKEFYRVGGDKPIKVDVRIIAATHQ NLNNLVSQKNFREDLFYRLNVIKIEVPPLRDRKDDISDLSKYFLKNYADSLDEDLRVI SDEAMKLMNKYDWPGNVRQLENVCYWLTLMSPSQSVKSQDLPTEIKEFEITDIPTSSW EDGMQNWLKNVSMNIDSGLSEIAITKIEKMLIKTALERSNGKKNDAAQILGWGRNTLS KKMKEHGI" gene complement(152144..152548) /locus_tag="NT01SARS_1014" CDS complement(152144..152548) /locus_tag="NT01SARS_1014" /note="identified by match to protein family HMM PF00581" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="EJP71209.1" /translation="MELINFLIEHFYFSAPLVIVLILFFISNSKKGGTKISCQSLISL SNQDQALIVDLRSSEAFNSGHITASINIPVNDVSRRSNEIINSTKSVVLVCEMGSSST NAGETLKKEGLKDIFILRGGINEWKMNNLPLV" gene 152594..153217 /locus_tag="NT01SARS_1016" CDS 152594..153217 /locus_tag="NT01SARS_1016" /note="identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258" /codon_start=1 /transl_table=11 /product="2,3-bisphosphoglycerate-dependent phosphoglycerate mutase" /protein_id="EJP71210.1" /translation="MKNTSLILVRHGQSEWNEKNLFTGWENPGLTKKGTDEAKHAGLL INDLDIEFDHLFTSVLDRAKLTGAIILENINQKDLDSIENKALNERFYGDLQGLNKDE CRQKWGAEQVQIWRRSYDVGPPGGESLKETGERVLPYYLNEIYPLILQGKNILVAAHG NSLRSLIMHLDKLSSDEIVKLEIPTGAPIQYIFDDQGKVLIKKNLIE" gene 153210..154229 /locus_tag="NT01SARS_1017" CDS 153210..154229 /locus_tag="NT01SARS_1017" /note="identified by match to protein family HMM PF00633; match to protein family HMM PF00730" /codon_start=1 /transl_table=11 /product="A/G-specific adenine glycosylase" /protein_id="EJP71211.1" /translation="MNNLKQNNKNFSQVIPQWYMTSGRNNLPWRKGISPYKVWISEIM LQQTQVKTVIPFFNAFIKKFPNLKSISKASEDEILALWTGLGFYRRAKNIFKTKEIIK NEFKNRFPKKFKELILLPGIGRSTAGAIMSIAYNKSYPILDANVKRVISRYENIDIEQ KNAIKSLWELSEKYTPSENIFEYTQGIMDLGATICHLRSPKCSICPLNISCKSAFKEF ETVKKTKKQKLTKRINFTLAHSNQSFLLFKKNEQSFWESLWTPYDNQHLNSKSIFKDP KKVQTRHLNHALSHIDLDITVEIFDYDKPFKIETNLEHQWINKSEINDFGLPKPIKTI IQTYV" gene 154222..154491 /locus_tag="NT01SARS_1018" CDS 154222..154491 /locus_tag="NT01SARS_1018" /note="identified by match to protein family HMM PF04362" /codon_start=1 /transl_table=11 /product="putative Fe(2+)-trafficking protein" /protein_id="EJP71212.1" /translation="MSKKILCKKLNKELPALNNPPMPGPKGIELMNSISEEAWEMWKS HQTTLINEKHLDMSDPENRRWLQDQMDKFFNNEDYESAAGFKALD" gene 154584..157187 /locus_tag="NT01SARS_1019" CDS 154584..157187 /locus_tag="NT01SARS_1019" /note="identified by match to protein family HMM PF01266; match to protein family HMM PF01571" /codon_start=1 /transl_table=11 /product="sarcosine dehydrogenase" /protein_id="EJP71213.1" /translation="MTDNSNSKFPSEAEVVIVGVGGIVGSMLAYWLAELGQKNIVGLE KSTIIPSDIASTAHASDFVYNTTHDKLGCWTTAFSRKFYEDNGFFLKKGGLEICRVGD DERWEELKRKVASGKAFGTNVSLISAAEAVEKFPLLEEESMIGAMWDPDAGLVVPRSQ EVVNFAVESAKEKGALKTFTNTPATDFEIEDGKIVGVKTDKGTIKTNKVVIASGIWGP LMGDKAGVGVPLMPVEHPLLFFGPYEEIQDTEEMLVYPLLRDQGNSAYVRDTGKFHGG MLEWGYYEDKNPRLVDPEDIGNPDKTMLSDSMRYLELEEIAEPLEKAFETTPILSELG WDEKSSFNGLLSVTADAGSLIGESPEVRGFWLCEAVWVKDGPGCARLCAEAMVNGKTQ VDMHSFDISRFYPHQKEKEYVKTRAFENSQTIYTPAVHPREPYITQREMFVSPFYERE KELGGHFENEVAGWERALAYISNREKLDKYIKEVPLRENEWDTRHVPYDVANAEHLAM SDSVGMINLSHFPIMDIKGPDAERMLEYLSVAKVGGNTPEGKVIYTNFLDEDGGVHAD LTISRLGNDSYRVVTGGADGNRDWVTLRNYRDDNGLNADINIRTHDIATLGLWGPKAV EALGNFIDPNEIDIKNFPFVSAKNLTLNLSGGKKVHVWAARISYVGESGWEIYFNNNK DDGLALYDSLLEVGVVPVGIETYANSRRLEKSFRLQGADLETEYTAIEAAIQRPLVKE ADFHGKAAHLAHREEDPCAILCTMTLDDLNVSGKTRYPVGISPIIDPATGEVPIDSKG RRAYTTGMSYCPSLKKFVVMGYLPKEIAIQGKSLLIEYFNEDGDGLYPITVQIVGKGS LYDPGNERVRA" gene 157246..157321 /locus_tag="NT01SARS_1020" tRNA 157246..157321 /locus_tag="NT01SARS_1020" /product="tRNA-Phe" gene 157406..157807 /locus_tag="NT01SARS_1021" CDS 157406..157807 /locus_tag="NT01SARS_1021" /codon_start=1 /transl_table=11 /product="putative metalloprotease" /protein_id="EJP71214.1" /translation="MLMKSIYEFEKYLTDLPIKSHRFKNFELHVLEQPLELDYSAGGF QNKESAICPSEFEFFIKKGDIESYADDQDLSEVKKELCWNYIFNFQNNIYTGITDSFA GPMSYDQTIGFFDFDGDYVVXXXXXXXXGVH" assembly_gap 157774..157793 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(158115..158429) /locus_tag="NT01SARS_1022" CDS complement(158115..158429) /locus_tag="NT01SARS_1022" /codon_start=1 /transl_table=11 /product="glutamate-cysteine ligase" /protein_id="EJP71215.1" /translation="MEKNMQVFKCEINNPNGKINHNVHCDWDDQGNLHFCEHDLGDGV KEFWGTDEYEYFMMIHQKDVAKFVLCSFWKGFTFEDRFTVKDLRELCDEYEIEYSTDF WR" gene 158592..159569 /locus_tag="NT01SARS_1023" CDS 158592..159569 /locus_tag="NT01SARS_1023" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="retinol dehydrogenase 12" /protein_id="EJP71216.1" /translation="MISKHQTPTKSGFHSKTNANEITNGIDLNEKIAIVTGGYSGIGL ETTRELVATGAKVIIPAKRTEVAVQNLEGIVSKENIVEMDLGNLNSVKKFTEDFKESF GKLDLLINNAGIMACPETRIGNGWESQFAVNHIGHFLLTKELMDTMAENDSARFVSLS SSAHSLTGILWDDIHFQNNSYDKWMAYGQSKTASSLIAIEFHRRMVDKGVSGFSVHPG GILTPLQRHLQKEEMVALGWMDEDGSPSEMAKNFFKTTSQGASTTLWCATSSSLNGIG GVFCEDCDIAKRKNEVDESIQRYFGVADWAVDTEEASKLWDVTEKMLAS" gene 159566..159844 /gene="pip" /locus_tag="NT01SARS_1025" CDS 159566..159844 /gene="pip" /locus_tag="NT01SARS_1025" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="prolyl aminopeptidase" /protein_id="EJP71217.1" /translation="MSQVNRLYENIEPYSTGYLEVDEHKIYYEECGNPNGKPAVFLHG GPGGGGSTKVRGFFNPEFFRIIVFDQRGCGRSQPHACLKXXXXXXXXD" gene complement(159799..160284) /locus_tag="NT01SARS_1024" CDS complement(159799..160284) /locus_tag="NT01SARS_1024" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71218.1" /translation="MKKIYISFVLIFNTFISADEISVDEMVNFIVQEQFLSQQEDTMK NTMYTMMESMGLNVKSKAMSDFLDPLINEYLNNVEKKVPALYKDIYSDDEILALYNFM KTKEGISITNKQSLMIEKSMLMVSEDVVKLSENVGIALQENPELVQSXXXXXXXFFRH A" assembly_gap 159817..159836 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 160511..161488 /locus_tag="NT01SARS_1026" CDS 160511..161488 /locus_tag="NT01SARS_1026" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="retinol dehydrogenase 12" /protein_id="EJP71219.1" /translation="MISKQQKPIKSGFHAKTNADEIIKGVDLSNKVAIVTGGYSGIGL EATRELINAGAKVIIPAKREEIATKNLQGIVSKEDIIEMDLGNLNSVKNFTDGFKEKF KKLDLLINNAGIMACPETRIGNKWESQFAVNHIGHFLLTKELMNTMAENDGARFVSLS SSAHSLTGMLWDDIHFQNNPYDKWMAYGQSKTASSLIAIEFHRRMVDKGVSGFSVHPG GILTPLQRHLQKEEMVALGWMDENGSPSEMAKNFFKTTSQGASTTLWCATSSSLSGIG GVFCEDCDIAKRKNEVDDSLQRYFGVADWAVDTEEASKLWDVTEKMLAS" gene 161485..162447 /gene="pip" /locus_tag="NT01SARS_1027" CDS 161485..162447 /gene="pip" /locus_tag="NT01SARS_1027" /EC_number="3.4.11.5" /note="identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249" /codon_start=1 /transl_table=11 /product="prolyl aminopeptidase" /protein_id="EJP71220.1" /translation="MSRVNRLYENIEPYSTGYLEVDEHKIYYEECGNPNGKPAVFLHG GPGGGGSTKVRGFFNPELFRIVVFDQRGCGRSQPHACLKNNTTWDLVEDIEILKEKLK IKKWLVFGGSWGSTLALAYAQTYPNSVSELVLRGIFMLRDKELKWFYQDGASRIFPEA WEGFLKPINQENRHNLMDAYYKIFTGDDDEKKMEAAVAWSKWEGSVSTLSHKADMISS YSESKFALAFALIENHYFVNKGFLDSEDQLIASESIDKIRHIPAKIIQGRYDIVCPME TAWELKKNWPEAELIVAPSSGHSAFEKEITHELVRATEEFAKND" gene 162440..162934 /gene="aroK" /locus_tag="NT01SARS_1028" CDS 162440..162934 /gene="aroK" /locus_tag="NT01SARS_1028" /EC_number="2.7.1.71" /note="identified by match to protein family HMM PF01202" /codon_start=1 /transl_table=11 /product="shikimate kinase" /protein_id="EJP71221.1" /translation="MINISFIGMAACGKSTIGKAVANKIGVSFVDTDLLIEQKHEATL EEIKNKYDYKFVRDEEEKVILGLNSSNRIISTGGSAVYSAKSMEHLKKFSKVIYINTP LEIIMERIDIDQKRGLAVPEGMSIPEIYSEREPMYQKYCETILDGSKTIDQLVDETIK QLHE" gene 162927..163598 /locus_tag="NT01SARS_1030" CDS 162927..163598 /locus_tag="NT01SARS_1030" /codon_start=1 /transl_table=11 /product="oxidoreductase htatip2" /protein_id="EJP71222.1" /translation="MSKKILIVGASGLVGGEILKNLKTTNNDLILLSRKKLLCENNVN QIVVDFEDIDSLDTNLNIDEIYIAIGHKLSLSELVYIKKNNRKSFVNVDYNYIKKVAE FAKNCGANSVGLISAIGANTKSLNTYLKVKGDVEQEIKLVGYKKIIIAHPSHLLGKRA GEDIPMNVKVFEQITNLFGLLMIGPLQKFRNVEAKKVAKAIISKMDSVEEGIHYIDYK YFKNF" gene complement(163585..163845) /locus_tag="NT01SARS_1029" CDS complement(163585..163845) /locus_tag="NT01SARS_1029" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71223.1" /translation="MNMLDLIQLLSVFFGTLIAAPLVVSKKAKKRMVGLSAVIAGSFF AIIVQLYLGLYYFVFANAFWLLNACNGIKKIIKTKNKRIKNF" gene 163877..164359 /locus_tag="NT01SARS_1032" CDS 163877..164359 /locus_tag="NT01SARS_1032" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71224.1" /translation="MNIGAYYEYLKLKVKIFLELLKKKCNLIYINKYKVIIMKNFTMT LSFFLCFTLVADDHIDKKETMKDKFMNNPNYLMDFKECKEMKDGVFGLLSLGDSVWKE IELNPENEEKWLEVSILADMAANYSTIYNVWCKDMINHRMKMRMMSEKKKGKKEKEDN " gene complement(164356..164580) /locus_tag="NT01SARS_1031" CDS complement(164356..164580) /locus_tag="NT01SARS_1031" /codon_start=1 /transl_table=11 /product="putative beta-glycosidase" /protein_id="EJP71225.1" /translation="MNKTEKVALREAVIVVLMGAVINFPLQTYLLWLTIDNWQWADPI KISIFVQLIITVVALIRVYAIRMRFQRGKF" gene complement(164589..164915) /locus_tag="NT01SARS_1033" CDS complement(164589..164915) /locus_tag="NT01SARS_1033" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71226.1" /translation="MDEDFIVVTTYDIDDAEIEKHIGLVQGSTVRARNVGSDFLANLK NIVGGELVGYSKLLQTSREQAYARMIEDAKSKGANAVLGFRFQTSTVASGAAEILAYG TGVKIK" gene 164952..165284 /locus_tag="NT01SARS_1035" CDS 164952..165284 /locus_tag="NT01SARS_1035" /note="identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097" /codon_start=1 /transl_table=11 /product="hemimethylated DNA binding protein" /protein_id="EJP71227.1" /translation="MQELVEAKFSIGNVVKHKFLNFRGVIFDLDPSFNNTEEWYNSIP KDFRPKKDQPFYHVFAENEEIFYIAYVSEQNLIDDVESGPANHPDIKKIFSHFDGNSY IPHNLATN" gene complement(165281..166492) /locus_tag="NT01SARS_1034" CDS complement(165281..166492) /locus_tag="NT01SARS_1034" /note="identified by match to protein family HMM PF00155" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="EJP71228.1" /translation="MHQEIIERFNSLKEKQISIDITRGKPDKDQLDLSNDLIDISIPT SSDDGADLRNYGEPFGIIEARRLGSELLNAPIENILAGEQSSLLLTYQTVLSNFLFAE PIPWKNLKNPKFICPVPGFDRHFMMLEDFGIEAVPIPLTDDGIDLNAFEEVLKTGDDY VGILCVPKHSNPSGEIYSDENLKKMFEIGSQYSNKFLFLFDHAYLIHDFLPTPEQKPL WQVVEESNVQDQTVVTTSFSKVTFGGGGISFMATSGHSLDLIKKVRTTMIICPDKLNQ KRHVEFFKNVENIKSHMKKHAELVRPKFELAYEYLKKLPEECGSFSKPTGGYFITYST SKPIASKVVKLCKDLGVLITPAGSTFPKNYDPNDSVIRLAPTYVSKEELADAMNVFIT SVEVAHFEIEV" gene 166521..167408 /locus_tag="NT01SARS_1036" CDS 166521..167408 /locus_tag="NT01SARS_1036" /note="identified by match to protein family HMM PF02646" /codon_start=1 /transl_table=11 /product="putative RmuC domain protein" /protein_id="EJP71229.1" /translation="MINYLIFISLILILGVLIYLIFSIKNKETSDIGETQLLQNKLNE VSNDINKIEIDLASVTTPINELNRFLGGNVTTGRLGEWSLESIVQDIMPSDSYKFQAQ INSESSDRVDCAVTSAEGFIIPIDSKFYAGQYQNYQSAGNDVDRKKVLRDLRTALLRD AEDISNKYILQNTTSNYAVLYIASEKLIDLVDMIDSLRQECLTEKKILILGPNTLAAF LDTIRVGHHYLKLNETAAKVAKVVSDIQKEFSNLDLSTESVIKRLDGALKDVQKLQTR VNVLGNKLEKGAESLDEEQ" gene 167408..168958 /locus_tag="NT01SARS_1037" CDS 167408..168958 /locus_tag="NT01SARS_1037" /note="identified by match to protein family HMM PF00528" /codon_start=1 /transl_table=11 /product="ABC transporter, permease protein" /protein_id="EJP71230.1" /translation="MQNLRLWKYISLPWIMFTFIFFIIFFILAFTRDIDIEFLSNRYL LSLFKNTILLSFGSAFISMLLAVPLAILVTFYKFPGCNFFSWALSLSIAFPAYVYAFI FVGMFEYSSPISEFLRNFGIALPSIKNIFGASLIMSMALFPYIFLITKAQLSSVGIKI FRAAKSLGDSNFGAVRKVILPSLKPAIIGGMALVIFEIIADFGGVSTLRIDTFTVGIY DAWFGYQSYFSGARLAGYLLIFVIFIMLLSKYYADSPRGVATRTAELINKVELNKSKQ IMFSLICSLVFLIVFCLPLFQLIYWQLSESSINLLSNINLLINSSILGFAVGIFTIFF AAALSLSFRQSNKLKLLISISTSGYAIPGSVISAGLLIGFDAIFGTSITIYGIFGLIL CLGLRFMTPAYNYSSSSLANISKSSENALSLIPSNPLKAFSSFYYPQMKSALFLGFMI VFIESVKEQPATLLLRPVGFDTLSTKIYNFTSEGEWEMAASPSLLLIFLSLVFVYLIN KNIELNTK" gene 168963..169448 /locus_tag="NT01SARS_1038" CDS 168963..169448 /locus_tag="NT01SARS_1038" /note="identified by match to protein family HMM PF00293" /codon_start=1 /transl_table=11 /product="RNA pyrophosphohydrolase" /protein_id="EJP71231.1" /translation="MHENEYRLNVGVIVANKHGNLLLCKRKGMNSWQFPQGGIDFGEN SLKAAKRELFEEVGISSKSVKLIDSIDDWLKYDIPKKSRRKKIFKTNFKGQKQKWFLF KLKEDVEISFDNDPDNEFDCFKWVSYWYPLNVIISFKEKVYREALNKLKYSFCKEFNN V" gene 169441..170229 /locus_tag="NT01SARS_1039" CDS 169441..170229 /locus_tag="NT01SARS_1039" /note="identified by match to protein family HMM PF01925" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="EJP71232.1" /translation="MFDEILIFGVLGILSGLLAGMFGIGGGLIMVPVLIGTFINLGFE NEIIVQLAIGTSISCIIFTGLSSANAHRKKNSIDFDSFKPVASGIVFGAFLGALFAVQ IDGLILKITIATFALVVGIDILLDKDLLQNMFRLKPKSIFVGSGIGFLSSILGIGGGT FSVPYFKGSGLNLTSAIGTSAACGVPIAIFGTLGYVLAGINQNMLPNLSFGYVYLPAL LGVSLTSIFSAKYGADIAHYLSQATLRRLMASWFFIISIYMFVV" gene 170226..171023 /gene="lgt" /locus_tag="NT01SARS_1040" CDS 170226..171023 /gene="lgt" /locus_tag="NT01SARS_1040" /EC_number="2.4.99.-" /note="identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544" /codon_start=1 /transl_table=11 /product="prolipoprotein diacylglyceryl transferase" /protein_id="EJP71233.1" /translation="MTIELSNFFNNPTLIELGPLKIQYYAVTWLLSALLIYIFLKNNR TIKEIGLNKDEVNDMVFLYGLFFGAICGGRVGYMFIYGSEQLINNPLSLFYVWQGGLS FHGGLIGVIISLVIFCYKKNIELLKLLDGVALAMPIGLGLVRIGNFLNGELYGKATNG DWGFIFPTDPFGVLRHPSQIYESFGEGLLLFLILFVISKQTNVKGIVSSSFLIFYGLI RFIIEFFRQPDAHIGYIAFDSLSMGQILCIPMMIIGFFMLLYSRRKI" gene 171020..171883 /gene="thyA" /locus_tag="NT01SARS_1041" CDS 171020..171883 /gene="thyA" /locus_tag="NT01SARS_1041" /EC_number="2.1.1.45" /note="identified by match to protein family HMM PF00303; match to protein family HMM TIGR03284" /codon_start=1 /transl_table=11 /product="thymidylate synthase" /protein_id="EJP71234.1" /translation="MKAYLDLLQYILENGEEKSDRTNTGTISSFGHQFEFDLEKGFPA VTTKSLAWKGVVSELLWFLEGSDDERRLAEIRFNKDRSELTNLEKYSTIWTDNADNQG KELGYENSDTKKILGPVYGVQWRDWCGIDQIKYLLKGLKENPDGRRHILSAWNVGEIE KMALPPCHVMSQFYIHNNSISCHMYQRSADMFLGVPFNIASYALLLSIFAEILDLQPK RFIHSFGDAHIYKNSIDQVKEQISREPKPLPNLKIPKINSIEDIKKYSVDDFILENYN PHPPIKAEMAV" gene 171880..172389 /gene="folA" /locus_tag="NT01SARS_1043" CDS 171880..172389 /gene="folA" /locus_tag="NT01SARS_1043" /EC_number="1.5.1.3" /note="identified by match to protein family HMM PF00186" /codon_start=1 /transl_table=11 /product="dihydrofolate reductase" /protein_id="EJP71235.1" /translation="MKKIISHVVALSNNNVIGVDNMLPWNLKRDLQHFKNYTTNKILL MGRKTYESIGRPLPNRINYVISTTIDEIDGAEVFKSIDDALDAANKKCDDHNEYNEIV IIGGGYLFRDTLKITNKLVLTNVNCEIEGDVFYPDIDFNEWQEKSSENFSKDIDNDYD FKVRVLERV" gene complement(172386..173798) /locus_tag="NT01SARS_1042" CDS complement(172386..173798) /locus_tag="NT01SARS_1042" /note="identified by match to protein family HMM PF00515; match to protein family HMM PF07719" /codon_start=1 /transl_table=11 /product="putative tetratricopeptide TPR_2" /protein_id="EJP71236.1" /translation="MKKRFSLHLFSVLAILFAFSSVQIEAQSQSETKKPIKYKKARAL QTSTAKKMAKVYEALEEVDEKGEPAPDMVTVVNILTELRTDKDNLKSYDRSVMWNAWA YVYMTDGKFPQAMTAYTNVMNEPEVTIGLRNGALFSLAQLNLAEGNYQKGVNLILQWM DEVEKVTAQSYSVLGQAYFALGDYRKSMSSLETAISMAEEEGYKPRENWYSLLAGCYS ELKEEIGERESLLKQIPIYEILVNLYPKKTYFIQLGGAYGTLGRERDYMITLKTAYQK DFLDKESEYLALAQLLLLNKNPYWAAEVLVSGQNKMITIVDEKTEEEKLVPVVKSTEK NLKVLADSWRMAQEIDKAIPVLEKAAEMSKDGKSYVLLGNLYLSEDKVSEAVDAIKKG LKKGDIKKLSQVYLTLGQAYFELQEFEEAKKNFRIAARDKEKKIKTQANNWIKYTENE EIRVKNLALRRDYIQMNSSS" gene complement(173809..174510) /locus_tag="NT01SARS_1044" CDS complement(173809..174510) /locus_tag="NT01SARS_1044" /note="identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352" /codon_start=1 /transl_table=11 /product="TonB family protein" /protein_id="EJP71237.1" /translation="MNQVLTAINLVTKPIHDTFVKAFNANKYAAGIGFSSVITLTLFF VMVILIALGDSGLKQDTSVKLQDVVMPERDIDTFMSEVDKPEKPEEQPEDIAQPELDL QPLTGLDVSIAKPKANFKAGGSFFRDGEYIPLFKVVPIYPRRAQERGTMGYALVEFTI TETGSVEDANTIEGYCSNSNPSDPSTEFRPCTMFNSASARAALKLKYKPKIVDGKAVP VSGVLHRFTYILDDE" gene complement(174514..174924) /locus_tag="NT01SARS_1045" CDS complement(174514..174924) /locus_tag="NT01SARS_1045" /note="identified by match to protein family HMM PF02472" /codon_start=1 /transl_table=11 /product="biopolymer transport protein exbD2" /protein_id="EJP71238.1" /translation="MRRNAISTAVKDEESEINLTPMLDVVFIMLIFFIVTANFIKEPG LEINRPDSDTAEIQENAAILIAVGANDEVYMDGRRIDVRQVKANVVKMLADNPQGSVV IQADERAVADTIIKVMDGAREAGVNAISLASEPK" gene complement(174935..175465) /locus_tag="NT01SARS_1046" CDS complement(174935..175465) /locus_tag="NT01SARS_1046" /note="identified by match to protein family HMM PF01618" /codon_start=1 /transl_table=11 /product="TonB system transport protein ExbB2" /protein_id="EJP71239.1" /translation="MFFAITEAFSSIRDFMEAGGSVLWLIAILVFFMWAMIFERIWYF SHGHEFYIQDLSAKWNNRSDKTSWHALQIREKMLSQAKVEINKNLSIIQTCVVLAPLF GLLGTVTGMIEVFQVMAFNGGGDARAMAGGVSKATLPTMAGMVVALSGVFATIYLTSA SDRHTNDLRELIKREL" gene complement(175475..176863) /locus_tag="NT01SARS_1047" CDS complement(175475..176863) /locus_tag="NT01SARS_1047" /note="identified by match to protein family HMM PF01618" /codon_start=1 /transl_table=11 /product="MotA/TolQ/ExbB proton channel family protein" /protein_id="EJP71240.1" /translation="MKKYLSIIFVLSLTLNTFVVAQESEGDEAEISTVEALLQLVKEG KTKEQSANADREAKFMANKNEQAAILAAEKRELARQERIADQLEAEYKKNEEILRVKE EAYQKELGSLVELFGHLQSSAGEAAVQFSGSLTSPQYGLERVDFLNELTSKMSETTEL PTIREIEGLWYELQREMVASGQVVSFDTTVIDVDGESSTCNVTRVGLFNAVCDGKYLE YVAATGQYAFLPRQPAGRFTKTAKSVGNADVGEQVRFGVDPTGPTGGSLLANLIQTPS LAERAAQGREVGYAIIFVGLIGIGLAFWKLWSLYVLGKAVRAQAGSKTLDVRNPLGRV LKVGEENFKKDIDTLELKLAEAIMAERPSIERGIGAVRIISVVAPLAGLLGTVTGMIV TFQMITLYGTGDPKLMAGGISQALVTTVLGLLVAIPTTLLHSFTASSAKGIISVLEEQ STGILAERAEGS" gene complement(176863..177630) /locus_tag="NT01SARS_1048" CDS complement(176863..177630) /locus_tag="NT01SARS_1048" /codon_start=1 /transl_table=11 /product="TonB system biopolymer transport component" /protein_id="EJP71241.1" /translation="MFKFIKNISLPVLFCFSLSVSANETNVEVNMESILEVGRENQTL SANSQDKIDQTERQTDKIVNEYKVVNKQVEGLKLYNAQKRIQIQAQLDLMDKLDEQLV QVVVMQRQIPPLAEKMLDTLETFINLDTPFRSEERKARVDLVRSSLAKPKVTASEQVR QVLEAYNIEAEYGRKIDTYEDKLADGTVVNILVIGRIGMFYQTKDERTSGRWDNETGT WEELPGSYRKPIRDGIRMAKKLAPTDMLLMPVVKGEA" gene complement(177785..178630) /locus_tag="NT01SARS_1049" CDS complement(177785..178630) /locus_tag="NT01SARS_1049" /note="identified by match to protein family HMM PF06966" /codon_start=1 /transl_table=11 /product="wu:fc47e12" /protein_id="EJP71242.1" /translation="MKVITNILISVLSFAISYGIAHLTGSVIVKNAVLLAYVIHWIAY IPAYVFQTEKFYDLTGSVTYLSVVWFVFLSTYQSISLNFGNLILVLLISIWTIRLGLF LFMRIHKAGEDKRFRTIKTSASQFFMTFTISGLWVTLCSMCALVAISSPEGLVMNALT YVGIILFIIGFGIEIVADNQKTAFRSIEANKDSFITSGLWSKSRHPNYFGEVLLWFAI AVISFSSLEGLQLITLISPVFTYILLVYVSGVRMLEDMNDKKWADNEQYKSYKKNTPM LFPKL" gene complement(178627..180444) /locus_tag="NT01SARS_1050" CDS complement(178627..180444) /locus_tag="NT01SARS_1050" /note="identified by match to protein family HMM PF01401" /codon_start=1 /transl_table=11 /product="angiotensin-converting enzyme, somatic isoform" /protein_id="EJP71243.1" /translation="MKNFLSLILIIIVTSCAPSSEQTPSNQDLEEFLANVESENKKDG PVIYSASWISSNFITYDSQKVIADYGTKSTLKSLERSREAASFDGLDTSKENQRMLNI LKSSFVMPPPLDEELASELSEITTSLEAMYGSGEYCFDDEECYDLEAFESIIDNSRDP KELLRAWEGWHEIGKPMKPMYMRMVDIGNQGSVDLGYEGLSDLWFSKYDMPAEDFLDD TDRVWSEVKPLYDALHCHVRAKLNEHYGDEVISKTGPLPVHMLGNMWGQSWSNIYDLV YEEKPDSKYIDVTKIINEKSLSEIEMVEYAEDFFISMGFKPLPKTFWERSLFVKPRDR SVVCHASAWNLDPANNDLRIKMCIEKNEEDFITIHHELGHIFYYQAYNHIPTVFQAGA NDGFHEAFGDLLTLSITPDYLVDIGFISEDDAEEAKQDPIGLLMKQALDGVVIVPWAL MLDKWRSGVFDGEIDESNLNSSWWSLREEYQGINTSYERSENYFDPGAKYHIPGNTPY TRYYLASIMQYQFHEALCNLIDYDGYLHECSIYGNKEAGDRIITTMAMGQSLPWQDAF ENLTGSRQLSGKSIMNYYAPLKEWLDEENKNRTCGWSEE" gene 180487..181053 /gene="efp" /locus_tag="NT01SARS_1051" CDS 180487..181053 /gene="efp" /locus_tag="NT01SARS_1051" /note="identified by match to protein family HMM PF01132; match to protein family HMM PF08207; match to protein family HMM PF09285; match to protein family HMM TIGR00038" /codon_start=1 /transl_table=11 /product="translation elongation factor P" /protein_id="EJP71244.1" /translation="MKISTNQFKNGTKLVIDNAPCSIIEHEFHKPGKGQAVMRVKYKN LLTGNTNDKTFKSGESVESADVSHKEMEFLYKDNDSWHFMDKNNYEQIEVSESQMGNA SKWLVGQETCEVVLWNGQPILVNPPVIVELKIVKAEPGVKGDTVSGATKTAKLETNVE VQVPLFVNENEIIKVDTRDMTYVGRAKS" gene 181050..182783 /gene="argS" /locus_tag="NT01SARS_1052" CDS 181050..182783 /gene="argS" /locus_tag="NT01SARS_1052" /EC_number="6.1.1.19" /note="identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456" /codon_start=1 /transl_table=11 /product="arginine--tRNA ligase" /protein_id="EJP71245.1" /translation="MIDEINKEIEKFLSSIVNNKKNISSIIKKSSTSISDDLKKGHIT SNVCMVAASILKLNPKNLAEDLKTRLEKIDKFANVEVAGPGFVNISLNREDFVSTIEF INKNKDSFGSSAIGKKNKVQIEFVSANPTGPLHVGHGRGAAYGDAIGRILESTGSIVE KEYYVNDAGRQIDILTASVILRLIKNDISNYFPANGYKGEYIDEIGKKLDKKVKIQDF KSLSIKSSEDPEEEIDNIIHELEKLNNNSWNLIKKFSLKEIVKSIEDDLKAFNVNFDK WFYESSLGKIGDDSSDIALSVNKLIKDGHAYEKDKAIWLNTDISGDDKHRVLVRDNGK ATYFASDVAYHKNKIDRGFDKLINVWGADHHGYIKRIEASIENLGSNKNKLAVKLVQF ANLFKDGKKVKMSTRSGEFFTLKNLIEDIGSDAARFYYLSKQADQHLDFDLDLAKSDS KENIFYYIQYAHARIVSLEEKALDKFSEIKRNIKNISSGDYKECDNLIHEISKFPDIV NKSANTLQPHVIIYYLKDLSQLFHSFYNDNHVLSESEENMQSILECLIAVKQVISNGL NLLGITPMQKM" gene 182788..183321 /locus_tag="NT01SARS_1053" CDS 182788..183321 /locus_tag="NT01SARS_1053" /note="identified by match to protein family HMM PF05036" /codon_start=1 /transl_table=11 /product="putative sporulation domain protein" /protein_id="EJP71246.1" /translation="MKDFANVKGNKSKKNKRKTVFTSKKPSVNTISTSTILILIFISV GLASSSIFLFKTDVISIKTANTSNTVNIDFPSSLMENSVLIEFNEENNSLECQYFVQI GAYGNKKYALEAIKMLNSDIENLSINEVYSTLLPGKLLNSVISGPYINRSAANNAKEK ITKSGFEPRLRTVCKEN" gene 183306..183992 /locus_tag="NT01SARS_1054" CDS 183306..183992 /locus_tag="NT01SARS_1054" /note="identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044" /codon_start=1 /transl_table=11 /product="pyridoxal phosphate enzyme, YggS family" /protein_id="EJP71247.1" /translation="MQRELIKNINAINNSIDELCSSINRSRDEITLIAVSKKKGFELV KLALENGINNFGENYAQELQEKSSLIDSDNIVWHFIGPIQSNKVKVIANNADWIHTLE REKIIRKFNDECKKINKVINGCIQINISSEKSKSGCSPDELFDIAKLVESMENINLKG IMALPKLTNDKEERDHMMEEVINLSVKLQKIYPSASAISLGTTSDYEDAIIHGSNMLR IGESIFGKRS" gene 183989..184777 /locus_tag="NT01SARS_1055" CDS 183989..184777 /locus_tag="NT01SARS_1055" /note="identified by match to protein family HMM PF03807" /codon_start=1 /transl_table=11 /product="putative pyrroline-5-carboxylate reductase" /protein_id="EJP71248.1" /translation="MKNILFFGGGNIAQALISGLLLNGMSNKNIFFVDRNPLNQKKLN NLKVKSLKKSNSDIDIVILSVKPKDAIQAYKEILNNYKNPKIVSLVAGIKSSTYIKLD NKSEFMRAMPNTASKYGQGITALYNSSFKKSNFKKVSSIFSKLGTVIEVDNDSKIDTF TGVIGSGPAYFFQTLKSFEKKLMRLCNQDEKIVREIIANLMKGVGSSIEKDGDLDNLI KAVASKKGTTEAGLKSLKSNNLNQIFEKGLNAAIKRSKEISNEF" gene 184767..185291 /locus_tag="NT01SARS_1056" CDS 184767..185291 /locus_tag="NT01SARS_1056" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71249.1" /translation="MNSNMQILGLILSILNYALVFLFIFNLLKVNYYNQIVSIFVKAY SPIAKIFSPLPIQALNILILAIVFKLSSLVIYFGDQYVITTLLGVAVIQTIMIILRII FFAVIGGVILSWVSPSNSNAFLELIEEISYKSLMPIRNYIPSAGGLDFSPLFVLILIN LIESFLSDMLRSIV" gene 185288..186373 /gene="metX" /locus_tag="NT01SARS_1057" CDS 185288..186373 /gene="metX" /locus_tag="NT01SARS_1057" /EC_number="2.3.1.31" /note="identified by match to protein family HMM PF00561; match to protein family HMM TIGR01392" /codon_start=1 /transl_table=11 /product="homoserine O-acetyltransferase" /protein_id="EJP71250.1" /translation="MKTETKLIHFSEGIELESGEKLNSFDLMVETYGELNEGKSNAIL LCHAFSGNHHAAGSSEDFGIGWWDQLVGPSKTIDTNKYFVVCCNNLGGCAGSSGPSSI DPSSQKIFGKSFPQVSVLDWVNSQKMLMDKLNIECWHFVAGGSLGGMQALQWSISYPD KVKKAGIFAAASKSSSQNIAMNEVARESIRKDENFHNGNYYEHNVIPKNGIKTARMLG HITYLSEEHMDSRFGRKFQDEGSKVEESVSFEVENYLQYKGEQFSELFDANSYILMTK VMDSYDAGKDKTLVEALKDVKAELLIVGFYSDWLYPPERGKEIQIAAMNNNIRSSFVV LQGDHGHDSFLFSSKTYSNLITNFIES" gene 186373..186963 /gene="metW" /locus_tag="NT01SARS_1058" CDS 186373..186963 /gene="metW" /locus_tag="NT01SARS_1058" /note="identified by match to protein family HMM PF07021; match to protein family HMM TIGR02081" /codon_start=1 /transl_table=11 /product="methionine biosynthesis protein MetW" /protein_id="EJP71251.1" /translation="MAIKLSKIINSWVPENSKVIDFGCGDGSLLKELFENKQVLGYGV EINDTKIEKCIEKGVPVIKLNIDKGLNDFMSSNFDLSIMARSIQCLKNPDLALNRMLE LSKRCVVTLPNLGYWRCRINLASGKMPITPELPSSWYETENIHLCTIKDFENLCLKEN INIKDKVFINRNGDQGGLSKINPNLFAVEGVYLLEK" gene 186953..187564 /gene="rdgB" /locus_tag="NT01SARS_1060" CDS 186953..187564 /gene="rdgB" /locus_tag="NT01SARS_1060" /note="identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042" /codon_start=1 /transl_table=11 /product="non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family" /protein_id="EJP71252.1" /translation="MKSNGDILIASSNKGKLKEFKKLFKNHKVFSLSDLNIEDAIEDG DSFLENAMIKAKHGAKESKIYTIADDSGIVVPELGYEPGIYSARYAGEGASDKDNRDK IIQKLIEKKEESLEAFYVCVLVGLKSPNDPMPIVTQGEIHGRISINSSGEGGFGYDKI FYPDGYDCSMASLDQQIKNKVSHRAIASEKFIKLFNSSYDTFL" gene complement(187546..188193) /locus_tag="NT01SARS_1059" CDS complement(187546..188193) /locus_tag="NT01SARS_1059" /note="identified by match to protein family HMM PF02390" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(7)-)-methyltransferase" /protein_id="EJP71253.1" /translation="MQLKFLPSFVKRKGRITKKQTHSLSSLSEFSVKSIQEVEDFSKH FDKCYLEIGFGNAENIIFQAINNPSYLFIGSEVYMSGIGTLVSSIKENNINNIKIFSD DIRILLDQSPKIVFDSVIIICPDPWPKEKHHKRRLINKSFLEMVHDFMKDDSNIYIST DWENYAESISELFVKNKLFKPSSNKSFQKDSLSKFERRGKDEGRELFEFNYKKVS" gene complement(188209..189069) /gene="rpoH" /locus_tag="NT01SARS_1061" CDS complement(188209..189069) /gene="rpoH" /locus_tag="NT01SARS_1061" /note="identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02392; match to protein family HMM TIGR02937" /codon_start=1 /transl_table=11 /product="alternative sigma factor RpoH" /protein_id="EJP71254.1" /translation="MGTQLQPSQLNSPGKDIESYLSSVHSIPILTKEEEQELALKLYE EDDLDAARQLVIHHLRFVVHIARSYQGYGLPLGDIIQEGNVGLMKAVDKYDPHRGVKL VSFAVHWIKAEIHEYILKNWRLVKIATTKAQRKLFFNLRSKKKSLDWLTKEEAEKIAS DLNVEVKDVLHMENRLSSNDSSFDSPVPSGDDDEIMSPSQYLEDKRYDPEIIVASEQA EQVNKEELLAALKTLDDRSKDILNRRYLSDEKATLHDLADEYKVSAERIRQIENSALK KLKAFMVDFA" gene complement(189124..189945) /locus_tag="NT01SARS_1062" CDS complement(189124..189945) /locus_tag="NT01SARS_1062" /note="identified by match to protein family HMM PF00459" /codon_start=1 /transl_table=11 /product="3'(2'),5'-bisphosphate nucleotidase CysQ" /protein_id="EJP71255.1" /translation="MNKMVSKNFFDNHLGALIECVNFASDEIMQIYNSDSFDQEEKSD GSPLTKADKKSNEIILNSLEKISKDISIISEETFSEDLIKSLDQTYWLVDPLDGTKEF INKTGEFTVNIAMINNKKVVFGIVGAPVTGKIWHGSIFEDVQSQNDSYDKLRIVMSKS HKSDKDTAFLNYIESQNIDYEIIEKGSSLKLCSLADNEADIYPRFGPTSEWDIAAAHA VLNQKGGSVIKIGDYEELAYAKEDSILNPFFIAFRNNSIKSDFLPVLGDFFKKLV" gene complement(189942..191069) /locus_tag="NT01SARS_1063" CDS complement(189942..191069) /locus_tag="NT01SARS_1063" /note="identified by match to protein family HMM PF00245" /codon_start=1 /transl_table=11 /product="alkaline phosphatase 3" /protein_id="EJP71256.1" /translation="MKYIFLLIVLVISSCDTSKKTESISIGTKKTEFIEIKDFPNNLK AKNIILAIGDGVGPNQITLSRIAIGGLDHRLFIDQIPYLGTSLTHSYNNAYTDSAAAA TAWSTGYKTKNRYLSLDPDKKILDTIVEMLHEKGYASGIVATSSVTHATPAALYAHID SRYEYKNIANQLINSSIDIALGGGKEFFDLNKINDTHYVLTEKESLQLNFDHSKKLIG LFDDDGIERSNEKPTQREMTNFALNHLNKQCNGFFLMTEGSQIDWAAHDNDANEMIEE FKDFDLTIRDLINFVNEDNETLLIVTSDHETGGLQILKQDDDKVVVQWGTGRHTSIPV GVHAYGPGAELFQGLMDNTDIHYKILEAIDYKNLDNQSCNI" gene complement(191076..191912) /locus_tag="NT01SARS_1064" CDS complement(191076..191912) /locus_tag="NT01SARS_1064" /note="identified by match to protein family HMM PF03767" /codon_start=1 /transl_table=11 /product="acid phosphatase" /protein_id="EJP71257.1" /translation="MKSLRHIFLYCIIFFNNAPLASEIDNSYQSQSLLAVLFKRTSAE FKANTFQVYSSAQKNIDKALEDKSWTAVLDQSDNYQSLPPAIILDIDETVLDNSEHQV RSIRNGTSYPIGWKEWVSEEAAGALPGVKDYLSYADDRGIKIFYVTNRTHDLEEYTRN NIKALGLPFDSDIDVLLMKNEKGWTSDKTSRRDLIKKDFRIIQIFGDQLDDFIPLKET ATSVQSRKDLIDKYANMWGEKWFMIINPMYGEWEEAIYDHCWSCFPEQSDRIKQRMKA LD" gene 191964..192125 /locus_tag="NT01SARS_1065" CDS 191964..192125 /locus_tag="NT01SARS_1065" /codon_start=1 /transl_table=11 /product="prefoldin subunit alpha" /protein_id="EJP71258.1" /translation="MDNRLIENLEKLKKMLVLLSEERKVVLSHHKTFEHVEKMRSIVN ESIEMANKS" gene 192122..192988 /locus_tag="NT01SARS_1067" CDS 192122..192988 /locus_tag="NT01SARS_1067" /note="identified by match to protein family HMM PF00378" /codon_start=1 /transl_table=11 /product="delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase" /protein_id="EJP71259.1" /translation="MTNKKYKCFDLNVSDNIANLVLSRPNELNTMSRDFWVELGSILE EINRNSDIRVVVMSSTGKHFCAGMDLSAFSNGVEDIPDDKKPDSARIGEALYRVAKEL QGYISNLEKIRVPVIAAIQGGCIGGAVDMVTACDIRLASKEAFFCIQEINIGMAADVG TLQRLPKIIPDSKMREMAYTGRRMYAEEAKESGLISDMFETQEEMLEGANKLAKEIAS KSPVAIYGLKAVMNFSRDHSVSDGLEYNALWSGAMLSQKDMTEAITANMEKRDASFDD MVDVKKFNESGS" gene complement(192985..193755) /locus_tag="NT01SARS_1066" CDS complement(192985..193755) /locus_tag="NT01SARS_1066" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71260.1" /translation="MIIVLSPAKTLDYEFESNHEHSVPAFLSQSSKLISNLKTKEPKD IASLMGLSDKLATLNFDRYQSWSPAKKVSADSKPSMLVFKGDVYQGLQAEDLNNSQMK FAQKHIRILSGLYGILRPLDLMKPYRLEMGTKLETSEGKNLYEFWGDKVQKNVLNELK VQRSDLLINLASKEYFTVLGKLPEDINVVTPTFKDYKNGNYKIISFYAKKARGLMAKW IIQNKVTNFEDLSGFDVDGYKYSKAESTATVPVFLRKS" gene 193794..194264 /locus_tag="NT01SARS_1068" CDS 193794..194264 /locus_tag="NT01SARS_1068" /codon_start=1 /transl_table=11 /product="tripartite ATP-independent periplasmic transporter DctQ" /protein_id="EJP71261.1" /translation="MYIEKGINSLGKFISLMIPVMTILMIVIIVARYFFGIGLTGLQE FVMYLHAFIFLGCAGYVHYKDEHVRVDIFYRDSSNSYKNNVNFILSLFFLLPVCFVIG FYSLELIEMSWKIREVSTEAGGLGYVYIQKTLIILFPLTMILTFAYQLIHKKWK" gene 194255..195592 /locus_tag="NT01SARS_1069" CDS 194255..195592 /locus_tag="NT01SARS_1069" /note="identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786" /codon_start=1 /transl_table=11 /product="trap dicarboxylate transporter, dctm subunit" /protein_id="EJP71262.1" /translation="MEIVPLLLLMIICAALLVGFPVALTLAGVSIIFALICIPLGIFD PTIFKSIPIRIFGIMNNVTLLAVPLFIFMGTILEKSGIAAKMLENMAKAFRSIKGGLS ISIIIVGALLAASTGIVGATVVTMGLMSLPILINQGYDKSFSAGLVASTGTLGQIIPP SIALVLLGDVMSNAYQRAQNDMGIFSQQTVTVGDLFIGAIVPGILICIGYLIYTLYKN SNNLDLKDTSTEFAINKVELFKTLALPIVLIFLVLGSIFAGIATPTEAAAIGAFGALL IALINRKVNLHFLKETSEKTAIVSTMIFTILIGASIFSLIFRGVGGDELIDLIFNSLP GGSFTALIFVLVIIFLLGFILDFIEICYVIVPLVAPPLLMMGFDPVWLAILFAINLQT SFLTPPFGFSLFYLRGVADESIQTKEIYKGVFPFILIQIIILFTVMLFPVLII" gene 195598..196368 /locus_tag="NT01SARS_1071" CDS 195598..196368 /locus_tag="NT01SARS_1071" /note="identified by match to protein family HMM PF00657" /codon_start=1 /transl_table=11 /product="gdsl family lipase" /protein_id="EJP71263.1" /translation="MYKKFLIISTFFILISCSDGFTKLEDRVKTQAKNIGVEMSFFEV KKEALYIQQWSKDDAFIDEINEFKKLDKENFPGKGKILFTGSSSIRFWDSLNEDMKPL EVLNRGFGGAQISHVIYHFEDIVKPYNPKAIVFFCGTNDLTALKTPEETLKDFKKFLN LVRNEFGNIKVYVIGIKPTVDRLYLDKEERIFNSSIKLLASDDAYLEYINIWDPMLNQ DGTRMPELFIEDGLHMNKKGYEVWTKKVRESLGKDFNL" gene complement(196363..197325) /gene="lipA" /locus_tag="NT01SARS_1070" CDS complement(196363..197325) /gene="lipA" /locus_tag="NT01SARS_1070" /EC_number="2.8.1.8" /note="identified by match to protein family HMM PF04055; match to protein family HMM TIGR00510" /codon_start=1 /transl_table=11 /product="lipoyl synthase" /protein_id="EJP71264.1" /translation="MEIIATTKITNRDGIKAVKNGQKLNKYSEIPTPKKPSWLKVKAE FNPNFHKVKEQVQSKQLYTVCEEAHCPNINECWSAGTATFMLMGSVCTRACKFCSVDT GNPNGWLDKDEPLNTAKAVEIMKLKYVVLTSVNRDDLPDGGAQHFANTVKLIKDLNPD TAVEALTPDFKGLSSSIETLVNCGLEVFAQNIETVERLTHQVRDIRAGYQQTLDVLAE SKRINPKVLTKTSIILGLGETDSEIEQTLNDLAKNKVDIVTIGQYLRPTRNHHPIERW VTPEEFERYRQIGLNKGFLEVVSGPMVRSSYRAERALEKNNAGL" gene complement(197326..197928) /gene="lipB" /locus_tag="NT01SARS_1072" CDS complement(197326..197928) /gene="lipB" /locus_tag="NT01SARS_1072" /EC_number="2.3.1.181" /note="identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214" /codon_start=1 /transl_table=11 /product="lipoyl(octanoyl) transferase" /protein_id="EJP71265.1" /translation="MLENLTFKSLGTVNYHETLELMKSHIKDKNFSNEIWMLEHPPIF TLGTAADKNHIINPKNIPVVQSDRGGEVTYHGPGQLVIYFLLDIKKLNFSPKKLVSTI QLFVKELLEEFSIDSNFIEGAPGVYVEEKKIASVGLRISKGKSYHGISINYDMDLLPF KQINPCGYKDLEVTQIKDLNKDISKLQLEKISIDLLRKIF" gene complement(197928..199013) /locus_tag="NT01SARS_1073" CDS complement(197928..199013) /locus_tag="NT01SARS_1073" /note="identified by match to protein family HMM PF03480" /codon_start=1 /transl_table=11 /product="trap-type mannitol/chloroaromatic compound transport system, periplasmic component" /protein_id="EJP71266.1" /translation="MRNLTYILTLIVLVGCSGEQSTGLDEDVLKEKKYNWRLVTSWPK NYPGLGMAPERIADLVEEMSNGQMTITVYGAEEQVPAFGVFDAVSSGSHQMGHSGGYF WKGKVPAAQFFTSVPFGLTADEINAWVYRGGGLELWREIYQPFNIYPIPAGNTGTQMF GWFNKEINSLADIKGLKMRIPGIGGEVLKEAGGIPVTLPGGELFTALQTGVIDATEWV GPYNDLTFGFHQAAKYYYYPGWHEPGPMLELLINLDAWNSLPKHLQVIIETASKAVNQ DMLDEYLARNNQALTELVDVHGVELRRLPDDVIEEFRLISNKILDDLAKDDENIAKVY ESYKNFKKDVSEYHKISEDAFVEARNK" gene complement(199013..201187) /gene="pcrA" /locus_tag="NT01SARS_1074" CDS complement(199013..201187) /gene="pcrA" /locus_tag="NT01SARS_1074" /EC_number="3.6.1.-" /note="identified by match to protein family HMM PF00580" /codon_start=1 /transl_table=11 /product="ATP-dependent helicase PcrA" /protein_id="EJP71267.1" /translation="MDVSHILDNLNEEQRKAVTSEKQHLLVLAGAGSGKTRVLVHKIA WEVEALGRNPSSIMAVTFTNKAANEMRSRIESLLQAPMLDSWVGTFHGLSHKLLKRFY KEAGLSSSFTILDSDDQLRIIKRISKELNLDEAQWPARQSQWQINAWKDDGLRQKDVD DKEDFYTETISKVYKEYEETCQRDDLVDFGELLLKSYEVLINSKSVKTFFQTRFQSIL IDEFQDTNTIQYKWLQEIASRDSNVTAVGDDDQSIYGWRGAKVEHVNSFSKDYKQTEI IRLEQNYRSTNIILNAANALIDNNKDRLGKNLWTDKVEGEQIVLYQAYNEQDEARFVA DILKEWMNKGGTYEEAAVLYRSNAQSRAIEEALLRVSIPYRIYGGLRFYERLEIKNAI SYLRIIFNNNDNPSFERSISNPTRGVGEKTLAKIRNAAKQYNISYIKASAKLIDEGKI SGRGGSGLKDYLEFIAGCKGFIEENSLSDLMELIIKETGLYAYHAKEAGEKGKTRTEN LEELITATKNFEQSIKDERTNIEIAESYLDIISLDSGDRQASEHDDAAQLMTMHSAKG LEFKLVLLTGLEESLFPHGRSMESASQLEEERRLCYVAITRAMEKLYITHAESRRLHG TDTFNPPSRFLREIPKDLIDEIRPRAQTNIPYNRKDFNETKIEFEEEIGIALGQKVLH KKFGEGIVLNYEGSGDAARVQVNFDSSGTKWLVMAYANLEKI" gene 201230..202075 /locus_tag="NT01SARS_1076" CDS 201230..202075 /locus_tag="NT01SARS_1076" /note="identified by match to protein family HMM PF01380; match to protein family HMM PF01418" /codon_start=1 /transl_table=11 /product="HTH-type transcriptional regulator HexR" /protein_id="EJP71268.1" /translation="MSTKLLRQIKNSIPDLRKSEKVVGEFILENPKSVITMKTAEASE AMGISEPTLIRFCKAIGFSGFQELKINLSQQLAADDYFVMYEIDEDDSIHELCEKVFD TGISEILNVRSQIDQDILENAIETLVNAKRVEFYAFGGSAPVAMDGQHKFFRLKIPSS NISDPHLQFMSANSLEKEDVVVAISQSGTTTALIESVKIVRKNGVKVIGIMPGDTPLA NICDYPLTINVGINNRISKPVTSRIAYTAVIDVLTMGVAQLKPEAQEHLYNIADSQRS LKSSD" gene complement(202072..202689) /locus_tag="NT01SARS_1075" CDS complement(202072..202689) /locus_tag="NT01SARS_1075" /note="identified by match to protein family HMM PF03171" /codon_start=1 /transl_table=11 /product="prolyl 4-hydroxylase subunit alpha-2" /protein_id="EJP71269.1" /translation="MEPKKISDNVTLYSADPIVYVVNNFLSDDECEAFVEMGKGKMER AKVISDDESEFHASRTNDFCWLEHSASDVIHEVSKRFSVLVKMPINNAEQFQLVYYGP GNEYKPHFDAFDKTTKEGQNNWFPGGQRMVTALAYLNDVEEGGATDFPKINVSVKPNK GDVVVFHNCIEGTTEINPQALHGGSPVVAGEKWAVNLWFRESAIY" gene 202735..203721 /locus_tag="NT01SARS_1077" CDS 202735..203721 /locus_tag="NT01SARS_1077" /codon_start=1 /transl_table=11 /product="[Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase" /protein_id="EJP71270.1" /translation="MKIFISIASYQDPLLESTIISAYESSKNPENLVFGVCDQSSNPL DIDKFSFKDQIHYEHIDPLLSEGPCWARAEIQKKFTNEEYYLQIDSHSQFEEDWDSYL IKYINKIQEVDSELHKNPIITCYPRAFEVLDYDSHKFSMNRDDKNTHVITFREDSMFI KGNFCRQIGAISNEEITHGFLLAAGFIFTTSDFVKKIPYDPIFYFYGEEISLVLRAFT RGFGIFHIPEAPLFHLYTDVTDIKRKLHWDTSEDEGRDIKWHQREEISIERLRKVINN EINDEFGLGDTRSLQDYENLCGVDLKNMKVLDKQKAYTSEFISKLSWQDSSF" gene 203761..204450 /locus_tag="NT01SARS_1078" CDS 203761..204450 /locus_tag="NT01SARS_1078" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71271.1" /translation="MSEEIKNFFSTYTDFVTKVTSDPSIDLDSLKNSFDDIESSSSIK TPRLLTAALGLGSETGEFVEIVKKMFLQGKPPNEDNIFHMKRELGDIMWYWVTACAAL TXXXXXXXENSINTLLYRGFGIFHIPEAPLFHLYTDVTDIKRKLHWDTSEDEGRDIKW HQREEISIERLRKVINNEINDEFGLGDTRSLQDYENLCGVDLKNMKVLDKQKAYTSEF ISKLSWQDSSF" assembly_gap 204071..204090 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 204490..204906 /locus_tag="NT01SARS_1079" CDS 204490..204906 /locus_tag="NT01SARS_1079" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71272.1" /translation="MSEEIKNFFSTYTDFVTKVTSDPSIDLDSLKNSFDDIESSSSIK TPRLLTAALGLGSETGEFVEIVKKMFLQGKPPNEDNIFHMKRELGDIMWYWVTACAAL NLDPYEVISENQEKLAARYGEKFEVERSEVRKEGDL" gene 204913..205281 /locus_tag="NT01SARS_1081" CDS 204913..205281 /locus_tag="NT01SARS_1081" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71273.1" /translation="MLILLSSLYMIYGFLFLYSYVKDIGLLRYLYAKKNINTLLTIEL IFIIVASFIVFTSQPMNWMVGLIMIFHIFGVVWIVAFPESFYSMYEESMSIDPGSVES MSGWILIGFGIFVYLSRIIT" gene complement(205278..206147) /locus_tag="NT01SARS_1080" CDS complement(205278..206147) /locus_tag="NT01SARS_1080" /note="identified by match to protein family HMM PF03446" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="EJP71274.1" /translation="MNIGFIGLGVMGFPMAGHLHKSKHNVAVFNRSSNKVEKWIKDYE GKAFKNIEDIAQFSDVIILCITKDQDVKEVLIKNQDFSNKLKEGTVIVDHTTTSSDLP IELNKILNIKGIEYLDAPISGGQAGAESGQLSIMIGGNKDAFNKIDDVLNCYSKFTKY MGKSGSGQLTKMVNQICIAGLIQALSEGINFSENVGLNSKDVLEVVSKGAAQSWQMDN RWETMLQDSYDHGFAVDLMRKDLEIVINEASKSNIDIDITKLVNEFYKDIQNEGGGRW DTSSLLKRLQKFA" gene complement(206156..206350) /locus_tag="NT01SARS_1082" CDS complement(206156..206350) /locus_tag="NT01SARS_1082" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71275.1" /translation="MPKKNFRKLFLEGWNRLFEKEEDINKLRTQSLYRAKKGIMNVGT PHDWEDYEEYKKSEEEKNNP" gene complement(206354..206527) /locus_tag="NT01SARS_1083" CDS complement(206354..206527) /locus_tag="NT01SARS_1083" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71276.1" /translation="MNSLILLSIIVTSVLSVTLLLFTSGKGLEGTKGITDEYVTESGL KKTARKDRTDYLV" gene complement(206585..207559) /locus_tag="NT01SARS_1084" CDS complement(206585..207559) /locus_tag="NT01SARS_1084" /note="identified by match to protein family HMM PF03060" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase NPD" /protein_id="EJP71277.1" /translation="MAIPKHIKDNISMPVIGAPLFLISGPDLVIAQCKAGIIGSFPAL NARPQHVLEEWIIRIKTELAEYQEQNPDAKVAPFAVNQICHGSNDRLMDDMETCVKHE VPIIITSLRPPAEVVEAAHSYGGLVFHDVISVRHARKAAEQGVDGLILVCAGAGGHAG ALSPFALLREVKEWFDGTVILSGSIGDGYSVASSLALGADFAYMGTRFIASKEANADQ EYKKMLEESAASDIVYSSLFTGVLGNYLKPSIANAGLDPDNLPDADKSAMNFGSGGNT DSKAWKDIWGSGQGIGRITDSPSVSDLVDRLKAEYLESAKELQNKVNL" gene complement(207581..208930) /locus_tag="NT01SARS_1085" CDS complement(207581..208930) /locus_tag="NT01SARS_1085" /note="identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891" /codon_start=1 /transl_table=11 /product="thermostable carboxypeptidase 1" /protein_id="EJP71278.1" /translation="MLIKTLIIYNLYMKSLLTFCLIFISTNILAELKIKLDQEIEELM PKVIEWRHDIHQYPELGNREFRTSKKIEEHLVSLGIEVETKIAYTGLVGLIKGGKPGP TIALRADMDALPVEEKTGLPFASKVRTTYLGNDVGVMHACGHDAHVAILMGVAEFLAK NKSDIKGNIMLIFQPAEEGPPEDEGGGAKMMLEEGIFERYKPEVIFGLHVTNIPNGVL LVKSGPAMAAASSYRIKIKGVQAHGSTPWAGIDPIMATSQLIESLNTVVSRRINIINN PAVVSVGMIKTGTRANIIPEDSMLMGTIRTFDPELRKEVYEEIEQIAAGVAVGTGTEI TVEFDVGGFFPVTYNDPKLVEAMKGSLASASPGKFVESDIPVTGAEDFSYFSQEIPGL YFWLGVNKPGVGLDAVNFGDRSGVPGNHSPYFIVDDSALDKGVRAFVHLVDDYPDKF" gene 208982..209668 /locus_tag="NT01SARS_1087" CDS 208982..209668 /locus_tag="NT01SARS_1087" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71279.1" /translation="MKRYFLSLILIASFNINADKDDDKSSDFDYSYLELSIIQTDTTD IGAKITLPLPGGLYIVAERRAEEIDSQNGSYERIINSARLGIHAGIGDIFGSISSKGV KLSVKNIFDVYAELGIKGTAYETNINSFSEDDSKANAVAGIRFGSPKGWEGKLFVDFS KDAEVVQKECPTGQVCTQSIEFMLDEDSDQKIGAGILYNFNKRSAISVEMFSSKLFDT SLKIGYLINF" gene complement(209665..209856) /locus_tag="NT01SARS_1086" CDS complement(209665..209856) /locus_tag="NT01SARS_1086" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71280.1" /translation="MATYECKSCGMSVKTICGKCDEPLVDGILKTDDGSEVQVSECPV GCGKIKSPLCCGLDMSCQI" gene complement(209867..210724) /locus_tag="NT01SARS_1088" CDS complement(209867..210724) /locus_tag="NT01SARS_1088" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71281.1" /translation="METTLLFKTLVILSGELFLMLSVCFYCLNKARKAYESNSSFLGL YFRGAVNMKGQLDLIPYGKVSDTFPKKMSKKINEDDWEQKEANTQEEVIELLKDGYFH VTKASPWIIVFFIFNTITLFGTLLAVDFFNLGFEIGLFIFTLTSLSFGPLLALIMLEM DENDGFTALKIVLVVTMLTGFIGYSDFYSFSENKIFGAFLLIALLGLLLFNLARFFIS ISRPTVRAGAIFGAVLFSLFLLYDFNYIKQREDLVSNNWETALEMAFILYLDIINLLL EILDAMGNS" gene complement(210780..211319) /locus_tag="NT01SARS_1089" CDS complement(210780..211319) /locus_tag="NT01SARS_1089" /note="identified by match to protein family HMM PF00583" /codon_start=1 /transl_table=11 /product="acetyltransferase, GNAT family" /protein_id="EJP71282.1" /translation="MSSLLEYNIQSFSSNSDINLLNEVYLLNQSNTPEVGNLESVDHL QSLLQMSLLNLFVSNNEEMIGFIICFKENSNYSSKNYKFFSEREKKFLYIDRVAIAEK YRRKGLGKNLYNKLENLCIENKIPLCCEVNTFPMNKPSIDFHKNLGFIEVGKKTFTQN EGSRSGKSSVVYFKKDISK" gene complement(211342..212022) /locus_tag="NT01SARS_1090" CDS complement(211342..212022) /locus_tag="NT01SARS_1090" /note="identified by match to protein family HMM PF00378" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase" /protein_id="EJP71283.1" /translation="MSEKLATLKKEENISIITLDDGKANVFSSKMSKDINECLDEVPT ENGCLIITGREGILSGGFDLKVIQGGDIEMIQEMTLAGFKLLSRIFSFPRPVIAACSG HAVALGTFLLCCCDYRIGVKGDFMLGANEMRTNMVIPPPILELIKFRVTENHKYRAVL GAEMYSLENAISAGLMDEVVDQDALMNSAMEKAADLSTMGHPSYSMTKELFIADALKK INEGISNL" gene 212053..213879 /locus_tag="NT01SARS_1092" CDS 212053..213879 /locus_tag="NT01SARS_1092" /note="identified by match to protein family HMM PF05960" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="EJP71284.1" /translation="MIKKILKGLGRLAALSVILTLLYLVNLFFMKPYSIDHYLGKELV FGLMDSPEAMTYIGVFDRFNWLTKHNSKLSIPQEDDIEKDIVDLEKSIKTLYKYDDSK LSDNQRITKKIAIFDLENSLKELKEFPYLDYPLNQIGGIHLNTVEFMSGMHPIRNKSE ANDYIKRVNLIKEVYEGVLKDLEKQAINEIYPPEFVYGHVIKQLNEFINYSYDDHPLY SQFMMKVDKLELSEEDIENLDQEIKKAIDESVTPGFKLLLGFMKKTQKNANKNHGIWS QPGGDEYYKLRIRTYTTTDFSPEEIHQMGLSEVERISNRMREILTSLGYDTAKSVGEI MNDLNENPDFLYADTPDRKEIVVNDYMKMVDEAIEVMTDYFHTMPKSEVIVKAVPEYS EQTAAGGYYQAPALDGSRPGVFYANLYDIKQTPTYSMRTLAYHEATPGHHHQIAHSLE NDSLTMYRRFGYRTSAFSEGWALYSEQLALEAGLAENPYDELGILQSEIFRAVRLVVD TGMHYKRWTREEAMEYMKSNTGMSDTEVRVEIERYIVWPGQALSYKVGMIKMLELRKR AMDKLGDKFNIKDFHSAVLDHGNPPLFIVEELVDEMIEEALN" gene complement(213876..214481) /locus_tag="NT01SARS_1091" CDS complement(213876..214481) /locus_tag="NT01SARS_1091" /note="identified by match to protein family HMM PF01553" /codon_start=1 /transl_table=11 /product="phospholipid/glycerol acyltransferase" /protein_id="EJP71285.1" /translation="MPSVSNKQIPQCFRAYRPKWLQWLGRAVLSILGWKVSGKISEEF ANQKLVVIVAPHTSNWDGIVGVATLAGLDAKISFIGKHTVFKYFGLGAFLRYMGGIPV DRSKPGGIIKDALDQIKKIDCSLIAMAPEGTRSKVKDWKTGFLRIAKELNTKIILASI DFSKKEILLGKAFTPSGDNVKDILDLKNYYSSFTPRHPDKF" gene complement(214462..215178) /locus_tag="NT01SARS_1093" CDS complement(214462..215178) /locus_tag="NT01SARS_1093" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF09529; match to protein family HMM TIGR02206" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71286.1" /translation="MAEFTPLSMSHLFIMVITVALIVFLPYFYINKADRSKNSLIVTL ISLMLINHAMDFYYEGYLIDIKLGLPLHLCDFSSASVMLYFLTKRKIFFLFAFFAGIS GAGMAILTPDTQYGFPNIHYIRHMVGHAMILLGVSYAIIIDNQRPYLKDVHRVLMVLS AFLVVIYFINYLLGPPANYWYVAEKPPGSNVTGFMRDAPYHMIDVYILAVIVCYSIYF PYLIKDKFNKQSNINAQCFK" gene complement(215181..215852) /locus_tag="NT01SARS_1094" CDS complement(215181..215852) /locus_tag="NT01SARS_1094" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF09529; match to protein family HMM TIGR02206" /codon_start=1 /transl_table=11 /product="saccharopine dehydrogenase" /protein_id="EJP71287.1" /translation="MAEFTPLSFSHLIIATITIALIVFLPYFFIHKADRSKKTLIITL ISLMLINHAMDFYYEGYLIDIKLGLPLHLCDFSSAAVMLYFLTKKREFFLFAFFAGIS GAGMAILTPDTHMDFQTFITXXXXXXXGEAFDKEVPRTKNDVIIFFVKVIGLIDGVLQ EKTYLRKIYGDTKYSAIQLTTASGVCSVLKMFLDGKIDTNGFTKQENLSWKDFIDNKF GKVYI" assembly_gap 215468..215487 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(215855..216862) /gene="lys1" /locus_tag="NT01SARS_1095" CDS complement(215855..216862) /gene="lys1" /locus_tag="NT01SARS_1095" /EC_number="1.5.1.7" /note="identified by match to protein family HMM PF03435" /codon_start=1 /transl_table=11 /product="saccharopine dehydrogenase" /protein_id="EJP71288.1" /translation="MKPKIGIVGSGNIGWALKQMLKEDYEIRQGDITDGFDASNIDHV KDFLNGLDAVISAGPFSVNKNIAGVASKEGIAYFDLTEDVETTDFIRGLNSKSILMPQ CGLAPGAINICAAGMMEEFDSVSEVLMRVGALPRFTTNEMSYYLSWSTNGLINEYCNE ADAIYEGKAVKLMPLEGAEKIVIEGESFEAFNTSGGCATMCETFEDKVENLTYKTIRY PGHLNHMKFLFNDLHLKKNKEILETLFDKEVPRTKNDVIIFFVKVIGLIDGVLQEKTY LRKIYGDKKYSAIQLTTASGVCSVLKMFLDGKIDSNGFTKQESLSWKDFIDNKFGKVY T" gene complement(216852..218225) /locus_tag="NT01SARS_1096" CDS complement(216852..218225) /locus_tag="NT01SARS_1096" /note="identified by match to protein family HMM PF00171" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase family 7 member A1" /protein_id="EJP71289.1" /translation="MNRDNYNQLVNKSHEISIKWRSLPAPQRGEYIRKFGEELRKQKV NLAALITEEARKIKTESLGEVQEAIDMCDFAVGLSRQLYGLTMPSERANHRLQEIWHP LGIVGCITAFNFPMAVFAWNFCLAAVCGNSIIWKPSPRSNECARGIKNAWDKISDDFS DLILILEGGNEESVALCEDNKISLISATGSTQMGKELAPIVSARLGKLLLELGGNNAA IICPSADLDLTVKGVVFSACGTTGQRCTSLRRLFVHEEIYDECVSRLNDYVNNLIIGC PSKDSSQVGPLISEESFNNMQVILDSLRSKDVEILGGERLEIEDPKEFYVRPALVLVD QIEDEMLKETFAPILYIKKFSDLKDAISMQNNVKQGLSSSIFTNDMRESELFLSESGS DCGIANVNIGTSGAEIGGAFGGEKDTGGGRESGSDAWKNYMRRVTATINYGEELPLAQ GVEFDET" gene complement(218262..219044) /locus_tag="NT01SARS_1097" CDS complement(218262..219044) /locus_tag="NT01SARS_1097" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71290.1" /translation="MCSINNNFWADPPWGDGNRKYRLGLSPIENERWLNRKPDKELIN YKKNLLDKNYSDVIAVTDDSLDAQIYLGEVFGVTDSKYPDLIAELSLNIQDDLCLLES KNDQRLIAASICSPSYWDVKKKIGKPLKQIHQPVKSLEEKVGDRIAKFISQAPVMKPF ARQNWLIHGDTKRFYLTEEKELTSHPSEWFIRSEKETLCRFHEDYSLFTINVMFQPLK YIHQFHDKKIALIKSLEFMDEDESKYFGGTKKIKSLLEYLHT" gene complement(219068..219373) /locus_tag="NT01SARS_1098" CDS complement(219068..219373) /locus_tag="NT01SARS_1098" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71291.1" /translation="MERYKTFKDFYPYYLSEHDNKYTKLMHFIGTSIGLVFLINFFLS FNFLNLLFALLSGYAFAWVGHFFIEKNKPATFKYPFYSFIGDHKMYVEILQGKHKIF" gene complement(219378..219689) /locus_tag="NT01SARS_1099" CDS complement(219378..219689) /locus_tag="NT01SARS_1099" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71292.1" /translation="MEEVKVYMIANLQIHDADKYREYEKGFFPLLKKHSGEFITYDDN ITHVEGENPMEGRVILFSFPSEQHAIDWYSDPEYQKLSEHRRVSVTTTLTRVSGLPPR K" gene complement(219696..220310) /locus_tag="NT01SARS_1100" CDS complement(219696..220310) /locus_tag="NT01SARS_1100" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71293.1" /translation="MNNLFKSLVVFVFTTNIMGMHAHGGGHMKGNSADWEIETYTTAA PDFIGDFATVVSASGEVLREGTNGWTCLPFIPMPKMGYKSANEAAPACADANAVAWAD AYINKTKPEIENDGWIWMIHGDTGVDNFRPYSEGDKENTAPEDWIYSGSHLMLMPKDP ASLEGVSTDFTTGAPYVMMEGTPFVHLMIPLEGYYKYQPESAPK" gene complement(220373..221584) /locus_tag="NT01SARS_1101" CDS complement(220373..221584) /locus_tag="NT01SARS_1101" /note="identified by match to protein family HMM PF00144" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="EJP71294.1" /translation="MSKIIIAAIIILLLGVLIYSPNIVRLYKLANLYNEKSIAKNFIN IDKIFDNTSNPIKASQNPHVFKKKDFKLPQSYYFEDERLDIKEGLSHFHTDGLIILHK GDMLFEQYWNGNSKDSKHISFSVAKSYLSALIGIALDEGLIDSIDDTVSKYLDDFGDS GYQDVTIKNLLQMSSGIEFNEDYEDPNSDINKFSRATARGTSFREFAKTLQSGKEQGT YNHYVSLDTQVLAMILESVSKMPVREYLYKKIWSKIGTESDAYYITDSTGVDMALGGL NATLRDYAKFGELYLNEGNWNGEQIVPKSWVEASHKPDSPHLMPDAGDLSSNEWGYGY QWWVPGNPITDYTAHGIFNQFIYVDPVTNVVIAKTSSNHRFRSEREYSKAAHIAIFRA ITKHIENEYKE" gene complement(221608..221973) /locus_tag="NT01SARS_1102" CDS complement(221608..221973) /locus_tag="NT01SARS_1102" /note="identified by match to protein family HMM PF07883" /codon_start=1 /transl_table=11 /product="cupin 2 domain protein" /protein_id="EJP71295.1" /translation="MKMKKINFQDKFQMFSDHWSPKVIAEMNDYQFKLVKIKDDFIWH KHDDTDEVFIVMKGEIFIEFENETINLTDGEMIVVPKGTKHRPFANDEAMIMLVEPRG VVNTGDQKNDLTAPNDQWI" gene complement(221942..222454) /locus_tag="NT01SARS_1103" CDS complement(221942..222454) /locus_tag="NT01SARS_1103" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71296.1" /translation="MNIHKYFVAILIYAFFTISISINAHEDDEILGYWLTSQSIVLIK NCEGNLCATIEHIFVEEGTDPKSILDSNNKDKALRERTIIGINLIQDFKYEKGSRSYK GGKIYDPGRGRIFKGNLNLLENKNLKVEGCVMRICGNEEWRALNVSIDEDGSKSAVLK YENEENQLSR" gene complement(222441..222998) /locus_tag="NT01SARS_1104" CDS complement(222441..222998) /locus_tag="NT01SARS_1104" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="EJP71297.1" /translation="MFRKYFIILIFIVSCEPQEASNIYKAPNSPKYIETFTGLKFLDD TQIISIKSSLEDFLNVENIKLNENFSFYINIQDIPNYIDCGYMNEEIYVKYIDRIFGS SLKATLDIDIEKEEDFYKINDLMINYLFMSEETGTRWRFKTNNPKELLVGNPVYDDNP YRICLSKNVLERKIINILKRKNEYS" gene complement(223008..224045) /locus_tag="NT01SARS_1105" CDS complement(223008..224045) /locus_tag="NT01SARS_1105" /note="identified by match to protein family HMM TIGR03806" /codon_start=1 /transl_table=11 /product="carbohydrate binding protein, putative, cbp32B" /protein_id="EJP71298.1" /translation="MKKTVQLLIVFMLSMRIDAVNQNLIVSDTFPQKLSEFHFFVDGS AQIPHSDVIPYELISTLFSDYSYKQRWVYVPKNTKAQYQENWVFDFPIGSALIKTFYY PIDERNPELGKNLLETRLLLRKESGWEAVSYAWNDEQNEAFKKVAGKTINVSWIDFMG ETKEVRYRVPNVNQCKECHAANDKITPIGPKARNINKDFQFEDGEFNQLTYWMSRQII DNYPLDLISPVDWMDESQDLNERVRSYLDVNCGHCHSPTGNANSTGLYLHLNETRDVN LGVYKKPVATGRGSGGLKYSIVPGKPEESILLHRMISMDPGVMMPESGRALTHEEAVE MVREWIMFMEK" gene complement(224051..225259) /locus_tag="NT01SARS_1106" CDS complement(224051..225259) /locus_tag="NT01SARS_1106" /note="identified by match to protein family HMM TIGR03805" /codon_start=1 /transl_table=11 /product="parallel beta-helix repeat protein" /protein_id="EJP71299.1" /translation="MLIAGILFVSNNSFGKEIIISPGSDAQDRLQEAMILMDEGDTLV IAAGYYEFEDGLSLDVNNVTIKGDGMDKTILDFKSQKSGAQGLLVTSDKVTLKDFAIL DAKGDALKVIGSNGINMINLRTEWTGGPKSTNGAYGFYPVESEDVLIEGCVAIGASDA GIYVGQSKNIIVRDSIAQYNVAGIEIENSYYADVYNNLASHNTAGILVFDLPDLPQQG GHHIRVFDNKAIDNDTDNFAPEGNIVGEVPRGTGIIVMANSDVEIFNNLMSGNGTVNL SIVSYSDETDDPNYYPHPKRIQVHNNTYGPGGFDPDLETGDLAKALFEISNGDMPDVF WDGVVPLSQMFFGQPEDEKLIMDEENQVSFLTISPIKYMLGFSNPIRKDKKEFKGVIN PLEPIVIDGL" gene complement(225365..225826) /locus_tag="NT01SARS_1107" CDS complement(225365..225826) /locus_tag="NT01SARS_1107" /codon_start=1 /transl_table=11 /product="rod shape-determining protein RodA" /protein_id="EJP71300.1" /translation="MNNKKLLLSILFSPLIFSNQCEDIELFFNAPMDGFKTNAKEFKV EFGSKNIQITPAGIEVEDRQSCIVGGHHHLIINNAYDVDKNIMEPIPYGANILHFGGG QTEAVLSLNPGKYTLQLAAGDHEHRPIKPFGASKEYKPVSSKKITIEILPN" gene complement(225829..226662) /locus_tag="NT01SARS_1108" CDS complement(225829..226662) /locus_tag="NT01SARS_1108" /note="identified by match to protein family HMM PF04116" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="EJP71301.1" /translation="MTNLSINEVYAIGAPIVLLIIFFEVIFSSFTNKNLYKKEDTLCT VGLLTGNILMVFILKGATLALHFYLYQFKLFNISEILPIWVLWILTFVMIDFVFYFYH RISHRVNFLWAIHMSHHSSEEMNFAVSFRQAWFGPVSKIPFFMTLPLLGFDPTIIAVA GVISTLWGIVGHTQIIGNLGPLEWIFNTPSHHRVHHGANPQYIDKNYGNLFIIWDRIF GTFEPEDEPVKFGLVRNVNTFNPTKITFMGWIDIFNNIKGSKNLNEALYYFFGPPKTK N" gene complement(226667..228172) /locus_tag="NT01SARS_1109" CDS complement(226667..228172) /locus_tag="NT01SARS_1109" /note="identified by match to protein family HMM PF01039" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA decarboxylase" /protein_id="EJP71302.1" /translation="MNDLYKEFLSRLEKSNDSNRKRATEKRHAKGFRTARENLDDLVD KDSFLEFGQFAVAAQRSRRQYKELQEETNADGIITGFCSINCEKVGKENSNAVAVIYD YSVLAGTQGYFHHQKLDRIIDKAREFELPIIIYTEGGGGRPGDVDVKTQVAGLHVPTF ANWASLSGRSIKIAINNGFCFAGNAALFGSSDFRIATKNSWVGMAGPAMIEGGGLGKF APEEIGPIQNHKPNGVVDVVVEDEAEATKLAKKLLSYFQGSEKAFEFNDQKMLRNALP DDRRYTYEIREILKLIADKESLIEIKEDYGRAIVTGFMRIEGHATAFIASDCKHLGGA VDSESADKASDFFDLCSDKNMPIVSFVDTPGFMVGPDSEKEGAVRRMSNLFKSGSKLV SPLVAIFLRKGYGLGAQALVGGSLHKPAFTAAWPTGEFGGMGLEGAVKLGFKKELEAI QDPDEKEKLYEKLVSNMYDAGKAVEVASFLEIDAVIDPADTRKVILKALSY" gene complement(228176..228535) /locus_tag="NT01SARS_1110" CDS complement(228176..228535) /locus_tag="NT01SARS_1110" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71303.1" /translation="MNDLYKVLTISEWENANENGFIETSLDIEDGFVHLSSSKQLALT LSLYFESESKLILLQIDGSEFGSSLVHEEIEGQRQGRFAHLYNKLSIDQISKKWIIER NSFDIPAEILQQIEMSN" gene complement(228532..228924) /locus_tag="NT01SARS_1111" CDS complement(228532..228924) /locus_tag="NT01SARS_1111" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71304.1" /translation="MKVLKEELILNCTAQKLWSILSDVSRCDWVPTINEITLDGECRI FEMEGMGIVKEKILLNDDTKMMLQYSAIETRTPIDHHLATMHVTEIDENSCTLIWTTE IDPEIFSDAVHQGMLVSIEGIKKVINQE" gene 228982..229410 /locus_tag="NT01SARS_1112" CDS 228982..229410 /locus_tag="NT01SARS_1112" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71305.1" /translation="MFEEYQSTLLGLWLILTTILFQAMVAIRFHRSQKGGYKVGIIKP ELGQSSIVFRSHRTFHNSLENIIPFFGMVVLGVLSEYSASKLAIVTWIYATTRIIHMV LYYKIVTEKNPSPRSLFWAIGFITNIYLLVDLGIHLIIKL" gene 229439..229855 /locus_tag="NT01SARS_1113" CDS 229439..229855 /locus_tag="NT01SARS_1113" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71306.1" /translation="MKNYFYAFVLVFAVSSSAFEVTGESFKAKFKVDSITVGKLESTI NLSSADTGQYGKVYVSYTLRSNPNITTSGTWTGHGRGISPEGVLARGDLMGVWTLDGT KLHVKSVDSVSDGINFLQGTIDLVAGEMEAEVFKVE" gene complement(229895..230344) /locus_tag="NT01SARS_1114" CDS complement(229895..230344) /locus_tag="NT01SARS_1114" /note="identified by match to protein family HMM PF04828" /codon_start=1 /transl_table=11 /product="glutathione-dependent formaldehyde-activating GFA" /protein_id="EJP71307.1" /translation="MDKNESGKCQCGKISYTFNKEKVISAHHCHCKDCQRATGCGKAT IIFLAKKNIEVEGELKYYESVGTAGSHVRRGFCAECGSGVLSYAKEVPHIIYLKAGTL DDSSWIKIDSNFFTSSAEEWNKPDETIKSFEKNPGLMSGIKTLLKSF" gene 230427..231296 /locus_tag="NT01SARS_1115" CDS 230427..231296 /locus_tag="NT01SARS_1115" /note="identified by match to protein family HMM PF00756" /codon_start=1 /transl_table=11 /product="putative esterase" /protein_id="EJP71308.1" /translation="MNAELANGKIEEFFIKNGIEERKIRIYYPNNNSVDDNTTFIIMN DGEELFLERDSWRGRTWRIDKSFNGLAKINKDPNVIIIAVQSAKKYKGKFFDNTRRYL ELFPKEVIEFLPEGNKKKIYGSLADTDYPKFLVESVVPFVEGKFEINLDKNNLGIIGS SMGGLSALNTIIEYPDEFGFAGCLSTHWIGIKPWEYLLLPIRQRISGDQDTIDAIYEY IKENISTIQNHKVYFDRGTRGLDYLYKKPQEDVDKLFLDNNINFETQVYKGHDHDPVD FGKRFIPAIEFLL" gene complement(231297..231689) /locus_tag="NT01SARS_1116" CDS complement(231297..231689) /locus_tag="NT01SARS_1116" /note="identified by match to protein family HMM PF00903" /codon_start=1 /transl_table=11 /product="glyoxalase family protein" /protein_id="EJP71309.1" /translation="MFSHVMIGSNDIEESKKFYDKLFETLDVKPGKLFPNLTGQKRYF YNLNGTSFCITEPIDGNPATVSNGATIGFNIKDTAQGDAWHKAGIENGGVSVEDPPGI RDYGDFKIYLAYLRDPTGNKLCALLRIK" gene complement(231704..232612) /locus_tag="NT01SARS_1117" CDS complement(231704..232612) /locus_tag="NT01SARS_1117" /note="identified by match to protein family HMM PF03601" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71310.1" /translation="MHLIIWLPFAFFAILINSPVFALIAGILYGMSVTSDNYRISETL ASNLLQAGIVLLGLTLSVESVINISSMYFAYVSAYILVIFGIGLLLAKIFRIDAKLSF LISSGTAICGATAMVAVSQVIKSKPKELFAAVAIIFLFNIFAVIVFPSVGRLLDLSPQ DFGLFAALAIHDTGSVLGAAMSFNNESLETATTVKLFRTLWLVPLILFISFLQSNKHA KPKIPLFIFMFVAAIFINAIFNLNSAVISWLSFTSNTLILAALFCIGAQIKIEQIRDI NSHNFLYALTLWFFALVFSCSVIFLF" gene complement(232612..233451) /locus_tag="NT01SARS_1118" CDS complement(232612..233451) /locus_tag="NT01SARS_1118" /note="identified by match to protein family HMM PF00903" /codon_start=1 /transl_table=11 /product="glyoxalase family protein" /protein_id="EJP71311.1" /translation="MISSLDHIILAVEDLKDAEKNYKNILGIEPSWRGLHKELGTANV IFNFKNTYLELLSAEGEGVGADLVKESIKKNGEGLAGIVLNTKDISKASKRLKDLGFL VGDVLTGEGKNKDTNDIRNWKYLFLPQELTRNLFLFLIEHTKGILPQDEKFPPGSINR LDHVVINTNDADGFINIYQDIFNIRLALDRIIEHWKSRMLFFRLNKTTIEVIEKKDRK DPNDSLWGLAWEVESIKDAYERLVSKGVEVTEIKKGLKENTLVATIKSHTHNVPTLLI EHT" gene complement(233456..233884) /locus_tag="NT01SARS_1119" CDS complement(233456..233884) /locus_tag="NT01SARS_1119" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase family protein" /protein_id="EJP71312.1" /translation="MPKQSIYNVGKFGVKAFTESLSLEMEIAESPVEVYCVFPGHIGT NIYSSSRFKSFEPDDAGAAIFGANAATEKEAGIQFKKNAPSSPEYAAKTILKNIKKKN KRILIGFDAHFYDLMSRLFPKSFLKIIWILPFLRNLFKSE" assembly_gap 233922..233941 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(233945..234262) /locus_tag="NT01SARS_1120" CDS complement(233945..234262) /locus_tag="NT01SARS_1120" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71313.1" /translation="MKLHNNDGHVTAIIDVSFSDDVNTIKDFVLNEQCPFIQSKEEEG LIKFEWFIDEETKTGTLIEVFRDSISWEKLADKVIGTPVNIKFNSLFIIEKMTVLGEL TDN" gene complement(234508..234915) /locus_tag="NT01SARS_1121" CDS complement(234508..234915) /locus_tag="NT01SARS_1121" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF07681" /codon_start=1 /transl_table=11 /product="DoxX family protein" /protein_id="EJP71314.1" /translation="MDRYIIKTMKLKRILMHTGRIFLALYFLIPGIGKFASWESQLAL METHNIILAPFLMAIAGVTQIIGGISLILNRYVVICALGFAAMTILINLNLHDFWNVY EGVNAERELQNFFKNLGIFAGLLLLASINMEKS" gene complement(234888..235523) /locus_tag="NT01SARS_1122" CDS complement(234888..235523) /locus_tag="NT01SARS_1122" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00106; match to protein family HMM PF08659" /codon_start=1 /transl_table=11 /product="15-hydroxyprostaglandin dehydrogenase" /protein_id="EJP71315.1" /translation="MKDFQNKVALITGAGSGIGRALALELAENGCSLALVDWNEDSLA ETKSMLEKKNVAVSTHAFDISDRDKVDDLPNQVLSHHNHIDLVFNNAGLSIVGTVDEV EEEDWNFGLDILLNSVIQMTTVFLPLLEKRPEAAIVNTSSIFGLFSVPKQSIYNVGKF GVKAFTESLSLEMEMAESPXXXXXXXSLTYVSAALADILNLGRWIVILSRR" assembly_gap 234967..234986 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(235538..235861) /gene="emrE" /locus_tag="NT01SARS_1123" CDS complement(235538..235861) /gene="emrE" /locus_tag="NT01SARS_1123" /note="identified by match to protein family HMM PF00893" /codon_start=1 /transl_table=11 /product="multidrug transporter EmrE" /protein_id="EJP71316.1" /translation="MTQTYLFLFAAIGFEVLGTMLLPASQNFSKLLPTVVLIISYTFS FYLLAIISQKLPLSIVYASWSGIGIFSIAILSYIFYKQTLNWQTVCGLFLIVIGVTIV NIYKN" gene complement(235880..236716) /locus_tag="NT01SARS_1124" CDS complement(235880..236716) /locus_tag="NT01SARS_1124" /codon_start=1 /transl_table=11 /product="putative alpha/beta hydrolase" /protein_id="EJP71317.1" /translation="MIKKTIFLCILFISFFGIAQENLMPIEISYGSLEKQKIDFYEGK SDKILIWVHGGGWLFGDKSSERWIRRFHNHFLDHENRNIYMIGYRTGEATAPNAVDDV MCAYKKILEDANYRNFSKDDIVVAGASAGGHLALMVGFASDSFNGKCISIIKPKSVIN IFGITEIKKTSEFLDKTKFFKASNYVREWIGPDLRISEVTKNLSPIYLINENSPNVLT VHGTSDRWVPYDQALLLDEKLGDKHKLLTIEDGGHYGFSEDEDNLIRQTIASFLIENY KK" gene complement(236833..237234) /locus_tag="NT01SARS_1125" CDS complement(236833..237234) /locus_tag="NT01SARS_1125" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71318.1" /translation="MIKTQLASDKFAMTISMACVAHCFFTPTFLILTSGIFSFSFDNE FVHKLIVLIAVPVSIYALSLGYKNHKTASFMPTGIIGLCILVLVVALGESTLGEFGEK GLTLLGSIMVAFAHYRNHQICRKLECNNCHE" gene complement(237309..237686) /locus_tag="NT01SARS_1126" CDS complement(237309..237686) /locus_tag="NT01SARS_1126" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71319.1" /translation="MQLHNNDGHITVIIDVSFSDDVKIIKDFVLNEQCPFIQSKEEEG LIKFEWFIDEETKTGTLIEIFNDSISWEKLADKVIGTPVNIKFNSLFIIEKMTVLGEL TDNLEEKLQAAGPMVKNYVGGIN" gene complement(237764..238171) /locus_tag="NT01SARS_1127" CDS complement(237764..238171) /locus_tag="NT01SARS_1127" /note="identified by match to protein family HMM PF07681" /codon_start=1 /transl_table=11 /product="DoxX family protein" /protein_id="EJP71320.1" /translation="MDRYIIKTMKLKRILMHTGRIFLALYFLIPGIGKFASWESQLAL METHNIIMAPFLLAIAGVTQIIGGISLILNRYVVICALGFAAMTILINLNLHDFWNVY EGVNAERELQNFFKNLGIFAGLLLLASINMEKS" gene complement(238144..238491) /locus_tag="NT01SARS_1128" CDS complement(238144..238491) /locus_tag="NT01SARS_1128" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="Zn-dependent protease" /protein_id="EJP71321.1" /translation="MIPIVNRVARMSAIIISLSPVIGIITRHPMPFSLLLFLGLSGFI ARMLIHAVTLPIEFDASFSKALPLLREGKYISQSNEKAVSQILKAASLTYVSAALADI LNLGRWIVILSRR" gene complement(238550..238846) /locus_tag="NT01SARS_1129" CDS complement(238550..238846) /locus_tag="NT01SARS_1129" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="glyoxalase family protein" /protein_id="EJP71322.1" /translation="MISSLDHIILAVEDLKDAEKNYKNILGIEPSWRGLHKELGTANV IFNFKNTYLELLSAEGEGVGADLVKESIKKNGEGLAGIVLNTKDISXXXXXXXX" assembly_gap 238555..238574 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(238851..239723) /locus_tag="NT01SARS_1130" CDS complement(238851..239723) /locus_tag="NT01SARS_1130" /note="identified by match to protein family HMM PF00106; match to protein family HMM PF08659" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase family protein" /protein_id="EJP71323.1" /translation="MKDFQNKVALITGAGSGIGRALALELAESGCSLALIDWNEGSLS ETEQMLEKKNIAVSSHILDVSDKEKVKDLPNQVLSHHNQIDLVFNNAGLSIVGTVDEV DEDDWNFGLDILLNSVIQMTTVFLPHLEKRPEAAIVNTSSIFGLFSVPKQSIYNVGKF GVKAFTESLSLEMEIAESPVEVYCVFPGHIGTNIYSSSRFKSFEPDDAGAAIFGANAA TEKEAGIQFKKNAPSSPEYAAKTILKNIKKKNKRILIGFDAHFYDLMSRLFPKSFLKI IWILPFLRNLFKSE" gene complement(239738..240058) /gene="emrE" /locus_tag="NT01SARS_1131" CDS complement(239738..240058) /gene="emrE" /locus_tag="NT01SARS_1131" /note="identified by match to protein family HMM PF00893" /codon_start=1 /transl_table=11 /product="multidrug transporter EmrE" /protein_id="EJP71324.1" /translation="MKIYFLLFFAIILEVIGTMLLPASQNFTKFAPTTILMIAYAFSF YLLAIVSQKLPLSIVYASWSGIGIFSIAILSYFFYKQSLNWQTVCGLFLIVIGVTIVN IYKN" gene 240110..241060 /locus_tag="NT01SARS_1132" CDS 240110..241060 /locus_tag="NT01SARS_1132" /note="identified by match to protein family HMM PF00028; match to protein family HMM PF09352" /codon_start=1 /transl_table=11 /product="secreted protein" /protein_id="EJP71325.1" /translation="MFDNFTHYKYLFLSFLLVACGGGGGSSSTPEMPSSSKNNAPFFI NTISEIEIDELQTEVVTIEADDADGDIIRYSLSGDDPSYFSISSNGEIAFNEIPSYQV KNEFSITIEVTDNIDSASHQLKIYLLRVCNELFLGYKVCLEEENLAITYDRQTDYPTW QDWDGDCQNNRHEVLINEHIDDDQNHPLVLSSDNCYVNSGKWYDPYDNIYFYNSSEVQ IDHVVALYEAHKSGAWYFPAARKLKFANNIDFDDLLIAVGGSSNSKKSSFDPASWMPS NINYSCEYLRKWLNIKAEFRLSIDEDEKIAIESLYETNKC" gene complement(241086..241883) /locus_tag="NT01SARS_1133" CDS complement(241086..241883) /locus_tag="NT01SARS_1133" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="putative alpha/beta hydrolase" /protein_id="EJP71326.1" /translation="MFICXXXXXXXIEISYGSLEKQKIDYYEGKSDKILIWVHGGGWL FGDKSSERWVRRFHNHFLDHHNINVYMIGYRTGEATAPNAVNDVMCAYKKILEDANHR NLSRDDIVVAGASAGGHLALMIGFANDSFNGKCISLIKPKSVINIFGITEIEKTSEFL DKTKFFKASNYVREWIGSDLKISEVNQNLSPVYLINEHSPNVLTIHGTSDRWVPYDQA LLLDDKLGDKHKLLTIEDGGHYGFSKDEDKLIRFTIATFLKENYKKF" gene complement(241846..242046) /locus_tag="NT01SARS_1134" CDS complement(241846..242046) /locus_tag="NT01SARS_1134" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71327.1" /translation="MNLIADKYSYGSGVKFIDFEYGDESFRSKILLFDNEGSAWVIRN RNPFALQFFDDVYMXXXXXXXY" assembly_gap 241852..241871 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(242214..242408) /locus_tag="NT01SARS_1135" CDS complement(242214..242408) /locus_tag="NT01SARS_1135" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71328.1" /translation="MICIKTEIPKEICEIDDELKAIYHSHDTVCIWVFKSREDRNNFM NETVGMNKEDREKYFSDNYG" gene complement(242405..242791) /locus_tag="NT01SARS_1136" CDS complement(242405..242791) /locus_tag="NT01SARS_1136" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71329.1" /translation="MNRKFVYYIIFAISFLLFSIVQDYIRPNYDGANGIIIYLLGVAP NFLPGIGLPALLYVVIPEVSKPNSSLFKNRLYWSVGISISGLIANEFITIFTPGRGVF DWNDILWTIIGAGLFTLIHRKLRFVS" gene complement(242893..243216) /locus_tag="NT01SARS_1137" CDS complement(242893..243216) /locus_tag="NT01SARS_1137" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71330.1" /translation="MRELVTKYFEDFCNKDLEKLSDIFSEEITLQDWDIHAEGKQKVL EANKNIFNSVDTISVNLNQLYIDDNVATCIIEIVINNKETLKVIDIIKIDTDGKIKEI SAYKQ" gene complement(243213..245039) /gene="glmS" /locus_tag="NT01SARS_1138" CDS complement(243213..245039) /gene="glmS" /locus_tag="NT01SARS_1138" /EC_number="2.6.1.16" /note="identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135" /codon_start=1 /transl_table=11 /product="glutamine-fructose-6-phosphate transaminase (isomerizing)" /protein_id="EJP71331.1" /translation="MCGIIAAASNRNVGKLLVQGLHKMEYRGYDSAGIALHQKDQIAH LRTLGKVKLLEEKMIAEKPKSKLGIAHTRWATHGEPSEENAHPHKSNERVYIVHNGII ENYLDLKEFLKDEGYSFSSQTDSELIAHLLEYFLSKGNSMVDSMYLTKEKLDGAYAIA AIDRENDQNIVIARSKSPLLIGIGTDEFLAASDPLAIGQLTNEFIFLEDGDVAELTSE SYTIFDDTKQKVSREITHIDISNQATSKGEYKHFMEKEIYEQPDAILNTIDGRVGGDD VLENIFGLGSSDIFQKVKRVQIVACGTSLHAGRVAANWFSAISELPTQIDYASEYRYR NPHVDEDSLLVTISQSGETADTLAALRYAKEKDYLSTLCICNVPTSSLARESEYSIFT NAGPEIGVASTKAFTTQLAALMLLALSLAKSRNRNPKLRKRIITALRSLPDTVQETLK LKDEILEIAPEIASKDNALFLGRGIFYPIAKEGALKLKEISYIHAEAYPAGELKHGPL ALIDEEMPVIALAPESEIAEKLVSNLEEVKARGGTLYVFSDPSISMDLKSGRLINMPK CDFLLTPIIYTIPLQILSYEVALLRGTDIDQPRNLAKSVTVE" gene complement(245045..246400) /gene="glmU" /locus_tag="NT01SARS_1139" CDS complement(245045..246400) /gene="glmU" /locus_tag="NT01SARS_1139" /EC_number="2.7.7.23" /EC_number="2.3.1.157" /note="identified by match to protein family HMM PF00132; match to protein family HMM TIGR01173" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase" /protein_id="EJP71332.1" /translation="MNIHTIILAAGEGSRMKSKRAKSLQRVGGKTMLEMICKTAGSIS TKITLIVGFDKDSIINESKNFDFEISTCEQASPIGTGDAVKCGINEVDDADKVLVLYG DVPLIKKETLENLVSTDDKSLTILSTKVDNPFGYGRVKKDNDGNVTQIIEEKDASNAD KKISEIFTGILCCNKVLLAEALEEIKNDNAAGEYYLTDIVSIINKKGFKIKTCIVSNE EVKGANTKKELSELEETFRKMKSKDLLEMGITVSDPNRVDVRGEVSAGTDCIIDVNVI LDGVVKLGDNVSIGPNTILKDVEIGNNTSIEAFSHLVSSKVGKDCIIGPYARLREGSQ IDDSAKIGNFVETKKTTVGKGSKASHFAYLGDAEIGSGSNIGAGTITCNYDGKDKHQT KIGDESFVGTNSSLVAPVTIGSNAYVAAGSVITKDVPDNALGVGRSKQNNVEDWSKNK D" gene complement(246427..246843) /gene="atpC" /locus_tag="NT01SARS_1140" CDS complement(246427..246843) /gene="atpC" /locus_tag="NT01SARS_1140" /EC_number="3.6.3.14" /note="identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216" /codon_start=1 /transl_table=11 /product="ATP synthase F1, epsilon subunit" /protein_id="EJP71333.1" /translation="MSKTMKINIVSSSEEIYSGEATMVFATGTLGELGIAPGHTPLLT GLAAGPVRVQNGSEEEAFFCSGGFLEVQPDLVTVLSDTAERAESLDESEAIKAKEIAE QELANKDTSIDYAKASAQLAEAVARLKTIQKLRKKQ" gene complement(246844..248241) /gene="atpD" /locus_tag="NT01SARS_1141" CDS complement(246844..248241) /gene="atpD" /locus_tag="NT01SARS_1141" /EC_number="3.6.3.14" /note="identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039" /codon_start=1 /transl_table=11 /product="ATP synthase F1, beta subunit" /protein_id="EJP71334.1" /translation="MSSGIVTQIIGAVIDVEFDKDNIPKVYEALMVDESGTTLEVQQQ LGDGVVRTIAMGATEGLKRGLSASRTNAPISVPVGPETLGRIVDVLGNPIDEKGPIGE KSKMPIHRKPPTYTDQSASSEVLETGIKVIDLMCPFAKGGKIGLFGGAGVGKTVNMME LINNIALQHSGLSVFAGVGERTREGNDFYYEMQESGVVNIDNLGESKVAMVYGQMNEP PGNRLRVALTGLTMAESFRDEGKDVLLFIDNIYRYTLAGVEVSALLGRMPSAVGYQPT LAEEMGALQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQISEL GIYPAVDPLDSTSRQLDPFVVGDDHYEVAQGVQKILQRYNELKDIIAILGMDELSEED KGLVARARKAQRFLSQPFFVAEIFTGTPGKYVSLEDTIKAFKGILNGDYDHLPEQAFY MVGTIEEAVEKAKTL" gene complement(248252..249115) /gene="atpG" /locus_tag="NT01SARS_1142" CDS complement(248252..249115) /gene="atpG" /locus_tag="NT01SARS_1142" /EC_number="3.6.3.14" /note="identified by match to protein family HMM PF00231; match to protein family HMM TIGR01146" /codon_start=1 /transl_table=11 /product="ATP synthase F1, gamma subunit" /protein_id="EJP71335.1" /translation="MANTKEVRKQIASIKSTQKITSAMEMVAASKMKKTQDTMLEGRP YSLKIKDVIAHVALANSEYPHPFYEERTPKKACFIVVSSDKGLCGGLNINLFKQVIAK SAELNEKEIDSCFALVGSKASAFFKSVGGNVIAVAEKLGDKPNPDDLIGLTKVVLDMH KNGDIDQAYLCSNTFVNTMTQQPNVDQLIPLAPEEQTESNPTQWDYIYEPEAKELLDG LLTRYIESLVYQAVIENNACEQAAKMIAMKNATDNAGDLIKELELLYNNVRQAAITQE LSEIVGGASAV" gene complement(249122..250666) /gene="atpA" /locus_tag="NT01SARS_1143" CDS complement(249122..250666) /gene="atpA" /locus_tag="NT01SARS_1143" /EC_number="3.6.3.14" /note="identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM PF09378; match to protein family HMM TIGR00962" /codon_start=1 /transl_table=11 /product="ATP synthase F1, alpha subunit" /protein_id="EJP71336.1" /translation="MSQLNPSEISSVLKEKIAGLDLSAERKNEGIVVSVSDGIVRIHG MGDVMYGEVIEFENGTKGMALNLEQDSVGAVVLGDYLEIIEGQKAVCTGKVLEVPVGE ELLGRVVNTLGTPIDGKGEIKAEKSLPVEVVAPGVIARQSVDQPVQIGLKAVDAMVPI GRGQRELIIGDRQTGKTAVAVDAIINQKGTGIKCIYVAIGQKQSTVANVVRKLEEYGA MEHTIVVSATAADPAPMQYLSAYAGCTMGEYFRDKGEDALIVYDDLSKQAVAYRQVSL LLKRPPGREAYPGDVFYLHSRLLERAARVNAEYVEQVTGGKVKGKTGSLTALPIIETL AGDVSAFVPTNVISITDGQIYLETELFNSGVRPAINPGLSVSRVGGSAQTKIMKKLAG GVRTALAQYRELAAFSQFASDLDDATKQQLANGKAFTELLKQKQYAPMSVAQQALSLF AADRGYMADVEVEKILAFEEALHGYLTSEKGELEDQINSTGDWNDDIEAQFVELVEDF KKTQTF" gene complement(250676..251212) /gene="atpH" /locus_tag="NT01SARS_1144" CDS complement(250676..251212) /gene="atpH" /locus_tag="NT01SARS_1144" /EC_number="3.6.3.14" /note="identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145" /codon_start=1 /transl_table=11 /product="ATP synthase F1, delta subunit" /protein_id="EJP71337.1" /translation="MIELTPLARPYAKALFDSAVESKNIDEMAEELKIMAAASKTEGV INTIENPSLSRQDVVSILVNLFEDSISDKSKKLLEILSENKRLNLLETIYLIYQELLE DHKDQKSVEVFVATDVGEESKNNIEQKLKKTYGKDANIYFSKDPNMMGGLSVKIGDET LDLSIRGKVKKLINQLNF" gene complement(251216..251686) /gene="atpF" /locus_tag="NT01SARS_1145" CDS complement(251216..251686) /gene="atpF" /locus_tag="NT01SARS_1145" /EC_number="3.6.3.14" /note="identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144" /codon_start=1 /transl_table=11 /product="ATP synthase F0, B subunit" /protein_id="EJP71338.1" /translation="MNINATLLAQAVVMIVFVAICWKYIYPPILSVMKEREKRISDGL EAAKKADDSLEEAKLAFDKELDQAKAEAAEILEKANARASQIVSDASSKAEAEAEKIL TSASTTIENEKNKAKEELREQMSEIIIDTTQKILGDEISKEKHEEILKKAAEEL" gene complement(251702..251923) /gene="atpE" /locus_tag="NT01SARS_1146" CDS complement(251702..251923) /gene="atpE" /locus_tag="NT01SARS_1146" /EC_number="3.6.3.14" /note="identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260" /codon_start=1 /transl_table=11 /product="ATP synthase F0, C subunit" /protein_id="EJP71339.1" /translation="MEYNILAAGLTMGLSAIGAGIGVGVLGSKFLEGIARQPELAPFL QGRFFLMMGLTDAVPMIGVGLGMYMLFAI" gene complement(251947..252837) /gene="atpB" /locus_tag="NT01SARS_1147" CDS complement(251947..252837) /gene="atpB" /locus_tag="NT01SARS_1147" /EC_number="3.6.3.14" /note="identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131" /codon_start=1 /transl_table=11 /product="ATP synthase F0, A subunit" /protein_id="EJP71340.1" /translation="MASELTTESYISHHLTNLTCGKTPDGWTCDPYKVDQMGFWAFHV DSLFWSIALGALFIFVFRKAISKNSDSNSAPSGMQNFVEMAIEFVEDNVQSLFGSVKN TLIAPLALTVFVWILLMNLMDLVPVDFLPVLAGHIAYAVAGDGVEWIKSPESFYFKVV PTTDPNITLGMAFGIFILTIYYSITVKGLKAFIAELTLHPFGKYLIPVNFVLEMVNFI AKPISLGLRLFGNLYAGEMIFILIALMLFFSSIPIGVLGFGLHLVWALFHILIVALQA FIFMALTIAYLAMAHETEEH" gene complement(252837..253169) /locus_tag="NT01SARS_1148" CDS complement(252837..253169) /locus_tag="NT01SARS_1148" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71341.1" /translation="MKNIDLKQKLTVLLNAAIFITGTISNVYFAFIALGYILTMLLVY LLGSRIKDAFINVGYIWVSKWAVFIVFLMLSGIFLPDVFLYSLAMFLVFNLSVNPASI MSHSGAKH" gene complement(253249..254091) /locus_tag="NT01SARS_1149" CDS complement(253249..254091) /locus_tag="NT01SARS_1149" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71342.1" /translation="MSDDNKILNKGLDALLGESQNNQKTVKEINLNKIKPGRFQPRSN FDDVKLQELTNSIKNQGVLSPILVRELGLNEFEVIAGERRLRAAKRAGLESIPCLVDQ KQDQDALVSALIENLQREDLNPVEEARGLDRLKREFGLTQDEVASSTGKARSTIANSL RILSLPASVLDMLSDGLIEKGHAKLLASMDSKEAEDLAKKIVKEKLSIKDLSGLTSKK PTNKNAKQKTKDTDILNVEQEMSESFGHKIEIDTKNKNAGRVSILYKTLDELDSIIQK LKNK" gene complement(254084..254845) /gene="soj" /locus_tag="NT01SARS_1150" CDS complement(254084..254845) /gene="soj" /locus_tag="NT01SARS_1150" /note="identified by match to protein family HMM PF01656" /codon_start=1 /transl_table=11 /product="sporulation initiation inhibitor protein Soj" /protein_id="EJP71343.1" /translation="MNKIIAIANQKGGVGKTTTAVNLAASLASTKRKILLIDLDPQGN ASTAAGIEGANRKTLCDHYFDQVSLEDCTQSSTDDYKIIPGDEGLIALEVAIRNDNNQ GFLTKSLADFENKFDYTIIDTPPTLNQLTIEALFCASGTLIPLQCEYYSLEGVAGLMQ TIETLSNKNMTSNRVLGIVRTMVDMRNNLAKEVSEELEKHFSNLVFNTLIPRNIKLAE APSHGISGIKYMPNSYGAKAYLALAGELIRRVEYV" gene complement(254838..255446) /gene="gidB" /locus_tag="NT01SARS_1151" CDS complement(254838..255446) /gene="gidB" /locus_tag="NT01SARS_1151" /EC_number="2.1.-.-" /note="identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138" /codon_start=1 /transl_table=11 /product="16S rRNA methyltransferase GidB" /protein_id="EJP71344.1" /translation="MPDNKTLFERLDQNTKNKINKYVDLAIEFNATHNIFARSNKKEV FNKDILDCLPVLEHIYENKSVMDLGSGGGFPGMVIGISKPKNKIYLVESSRKKAYFLK NTINTLELNNIEVINKTLIQKNNLDSFDYITTRAFANIKKTLNITKNNIHKRSKYLLL KGKKEKIEDEIETTNTKQLSYEIIKLDGKNGERNLVIIKPNE" gene complement(255439..257286) /gene="gidA" /locus_tag="NT01SARS_1152" CDS complement(255439..257286) /gene="gidA" /locus_tag="NT01SARS_1152" /note="identified by match to protein family HMM PF01134; match to protein family HMM TIGR00136" /codon_start=1 /transl_table=11 /product="tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA" /protein_id="EJP71345.1" /translation="MDKFDVIVVGGGHAGAEAAFAVSRSGLSCALITMDQTKIGQMSC NPAIGGLGKSHIVREIDAMGGLMGRATDLSGIQYRTLNTRKGDAVQALRVQCDRDLYK KAVQKILKETNIKIIQDEVVDFLLTNKKAQGVITKSKTYKSKKIILTTGTFLNGKMYT GNIIKTGGRIGDESSIPLSKRLYSLNLPMGRLKTGTPARIKLSSINLLDMEEQPGEKP TPWMSLASPPKKHQKQLSCYITRTNKKTHEIINKNIHLSAMYSGEIKGIGPRYCPSIE DKVRKFQDKNSHQIFIEPEGINKDLVYPNGISTSLPKKAQQEFIFSIKGLERSIITEY GYAVEYDFVDPRTLKQNLETKYLENLYLAGQINGTTGYEEAAAQGLMAGINASNSIKK LKDFVLERSEAYIGVLINDLTSHGITEPYRMFTSRAEHRLLLSQNNAEQRLILKANEI GIVKKERVDKYLSNEKEYKKFYTNNLVKLKKDFFIDKNGAKIRLQEKRSISSLLSRND VDEKKLFKPNKKDTKLYQRAITEIKYSGYIKKQIREINKTKKQNNKQIPTNIKYEEIH GLSNEVKEKLIKTQPQTIGAASQIEGVTPAAINLILIHLKKKELVSQNA" gene complement(257498..258814) /gene="trmE" /locus_tag="NT01SARS_1153" CDS complement(257498..258814) /gene="trmE" /locus_tag="NT01SARS_1153" /note="identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450" /codon_start=1 /transl_table=11 /product="tRNA modification GTPase TrmE" /protein_id="EJP71346.1" /translation="MSVVYALATPAVKSAICIFRVSGEGCHDYISEIFGLDSPQPRRF LLCDLKNNETFIDRVGLILFKGPESYTGEDSFEVYAHGSLGVMSLIVDLFDSKGFDQA SPGEFTKRAFINDKINLNEAESLSDFIESASSREVFLSGASLFGDLSKKLSDFSERIN SLRVRVEAEIDFSDEGQDFMDGSLSNDLSLLIEDFGSFVSLCINKREYSNNKNIVLVG PTNSGKSSIFNRLLGYERAIVTDAHGTTRDMISSEVFFQSNKFSIFDSAGIRETEDVI EKKGIETSIKKISDADLVLGVFEKKDASLVSSFKKMCDKGSFFIIQNKIDINSSDTSF FDCCVSAKTGEGFNSLKNLVVSFFERNKKNNKNSQYLIRDRHVKLFNQVTKDLDIALK GLNDSKSLELVAEDLKNARSGLDEILGKKFSDSLLGDIFSSFCIGK" gene complement(258817..260346) /locus_tag="NT01SARS_1154" CDS complement(258817..260346) /locus_tag="NT01SARS_1154" /note="identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592; match to protein family HMM TIGR03593" /codon_start=1 /transl_table=11 /product="inner membrane protein OxaA" /protein_id="EJP71347.1" /translation="MNIRNIYWGLIIVLSGLLLFEWTSQKREQSIDSHLDYAEFFNTS GYGDGYSIIENDKLFVVVATRTGSIIETRLKEYPVENVKGSLGFRVFGSSTETAFNYY FKSGFTGMNPVYLLSEVGDSFVVLEDPEKNLTKRVSLSSQDYEINILDSSKNGESGKS FAGLYRTAGRPLDLKSDVLSGGMMNNGSYLGVAISTDSAPYETTKLNQIEEGGVQNLS RSGWIAFVQKYFFAALLGSGDYIYNFYALPAESGLYRMGYTVENTSANNLVYEHEHRL YVGPKVRKDLMQKADSLELSIEMGWFWFLAQPMVLAMDWINGYVDNWGLTIVIFTILI KLVFWPVTAKSFSSMAAMRKLTPELNEIKERYKDDPQKTQAETLKLFKKNGANPLGGC LPVLIQMPFFIGFFFALREMVELRHSDFVIWSDLSVPDPYFIFPITFAILMTLTQRLN PQPAGMDPTQAQVMKYMPVIFSMFFVVMPAALGLYMVVNTGIQLIQQAYMYKKSGALA D" gene complement(260346..260651) /gene="rnpA" /locus_tag="NT01SARS_1155" CDS complement(260346..260651) /gene="rnpA" /locus_tag="NT01SARS_1155" /EC_number="3.1.26.5" /note="identified by match to protein family HMM TIGR00188" /codon_start=1 /transl_table=11 /product="ribonuclease P protein component" /protein_id="EJP71348.1" /translation="MRNPKKKNPNLTKLFSCKSFRVLKKDNGDGFEVSISKKYFKLAV DRNKIKRRIKEIIRKNGYSDFLSNGFVFSVFRPFAELSYENANKEIQEAIEEIKKIS" gene complement(260653..260787) /gene="rpmH" /locus_tag="NT01SARS_1156" CDS complement(260653..260787) /gene="rpmH" /locus_tag="NT01SARS_1156" /note="identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030" /codon_start=1 /transl_table=11 /product="ribosomal protein L34" /protein_id="EJP71349.1" /translation="MKRTFQPSNLKRKRTHGFRARMSTKAGRAVLSNRRKKGRKVLSA " gene 260965..262260 /gene="dnaA" /locus_tag="NT01SARS_1157" CDS 260965..262260 /gene="dnaA" /locus_tag="NT01SARS_1157" /note="identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein DnaA" /protein_id="EJP71350.1" /translation="MELWNKCSEKLENTLSQEDFNTWIRPLKASQEKNTLELVAPNDF ILNYIEKNFAKEIKTLVKSNSKKNINLVFKTLTKETFVDKYQNTSKNAEIKLVDGYTF DNFVEGKSNHLALAAAKQVAANPKGDYNPLFIYGGVGLGKTHLMHAVGNQILKNEPKK RIVYVHSEKFVSDMVKALQLGAMNEFKSFYRNADALLIDDIQFFAGKEQSQEEFFHTF NALLDRNNQMILTCDKYPKEIDGLEERLKSRLGWGLPVVIDPPELETRAAVLLNKANT MGVVLPNDCAIYIAQRIRSNIRELEGALKRVVANARFTNQEIDLALVKDALKDLFVIS AKMVSIENIQKTVAEYYNIKLSDLLSKRRSRSITRPRQMAMALTKQLTNHSLPEIGEA FNGRDHTTVLHACKKITDLRKESPSHEEDYRNLNRALTN" gene 262260..263363 /gene="dnaN" /locus_tag="NT01SARS_1158" CDS 262260..263363 /gene="dnaN" /locus_tag="NT01SARS_1158" /EC_number="2.7.7.7" /note="identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663" /codon_start=1 /transl_table=11 /product="DNA polymerase III, beta subunit" /protein_id="EJP71351.1" /translation="MDFYILKEEIVKSLNLTLGVVEKRQTLPILSNVLIEVDESSLKL TATDLESEISTTSTISNFNSGGKTTAPARKLSDLCRLLPDMAEIHFFLDGDNLKIESG SGKYNLSTLPSDDFPVFEFEDSQGQINISSENLKTIIMKTSFAMGNQDWRHYLNGLFI SIDDKNITSVATDAHRLALASSTLNEASMETTDGIVPRKSINEIGKLVGDNSENVLIK ISQSSILVEAAGTKFVSKLIEGKFPDYEQVIPTGESSLLVIDRKNFSDSLSRVSVLSS EKYKGVRIITKKNSLNISANNPEKEQGEEVVACEYSGEEIDIAFNVNYLQEILSTIDS EKIEINFFGSEKSCLITDPNSENLKYVVMPLLI" gene 263365..264444 /locus_tag="NT01SARS_1159" CDS 263365..264444 /locus_tag="NT01SARS_1159" /note="identified by match to protein family HMM PF02463; match to protein family HMM TIGR00611" /codon_start=1 /transl_table=11 /product="putative DNA replication and repair protein RecF" /protein_id="EJP71352.1" /translation="MPITKISLNNFRCFKNLELSLSPGINFFFGSNGSGKTSILESVF IFSSGKSFKSSNLTSLINYDNDKFILKGFDNKKGYIVEIEKSKNKTISISLNNNKTNT SKLVKEFPCTPIHNNTFSFADASPDFRRKLVDRSIFIAEDNFSKVWFSFYRSLRQRNF LLKNNRISDIYNWNTKLADEAEKLTKYRKDFFEKTLNEFYLLINLLKPEDVFDFFNFI KIEFSQGWAPEKSYLDVLNENKDIDIKRRSTTSGPHKSDIKFFINDIDARQILSRGEQ KFFSIIWSCAQHEVLKKHYEIDATLLIDDIKSELDERVFKLFSDLLNHINTQVIFSCI DDCFSSKITSSFNEFKKFHVEQLGK" gene 264448..266367 /gene="gyrB" /locus_tag="NT01SARS_1161" CDS 264448..266367 /gene="gyrB" /locus_tag="NT01SARS_1161" /EC_number="5.99.1.3" /note="identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059" /codon_start=1 /transl_table=11 /product="DNA gyrase, B subunit" /protein_id="EJP71353.1" /translation="MAKKSQEAKYDSSNIQVLKGLEAVKKRPGMYIGDTDDGSGLHHM VFEVLDNCIDEAMAGYCSDIKVIINKNGSVTIEDNGRGIPVDVHKKEGVSAAQLIMTT LHSGGKFDDNSYKVSGGLHGVGVSVVNALSKKLTLEVHRDGGEYFQEYSDGKPKAKLK KVKKSDKTGTKITFFPSEKIFTSIDFEVDRIYKRIQELSFLNAGVSINVEDKKSGKSK KFKNNGGLSSYVTHLRGRKQTVSDIFECSATDNDVGVEIAMQWTDSYTENVLCYTNNI PQKDGGTHLAGFRGSLTRVLKSFIKKENAKKTPTDLLGEDVREGLIAIISVKVPDPKF SSQTKEKLVSSEVEGVVSTIFSKYFNEFLLENPKDAMSIVSKVSEAALAREAARKARE MTRRKGVLEIAGLPGKLADCQEKDPSLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG KIINVEKARIDKVLGSQEVGTLIKALGCGIGKEDFDIDNLRYHRIIIMTDADVDGSHI RTLLLTFFYRQMYEIVEKGHVYIALPPLYKITKGKEFIYASDEKEKDDAIKKFSKNGN RGLEVQRYKGLGEMNPEQLWTTTMDPINRRMMRVDIKDIQDANESFEVLMGDDVEPRR EFIDANALSVKELDI" gene complement(266364..267068) /locus_tag="NT01SARS_1160" CDS complement(266364..267068) /locus_tag="NT01SARS_1160" /note="identified by match to protein family HMM PF01553" /codon_start=1 /transl_table=11 /product="phospholipid/glycerol acyltransferase" /protein_id="EJP71354.1" /translation="MQILKSFIFNLILYITLIPTSLIILFLYPFISTANLQSIASKWI LFILNSLKIICGVTWKIEGLKNIPEGPCVIVSNHQSAWESFFLQTLCIPSASIIKKEL LFIPFFGWALACLKPIHLRRSKKYRSLKKVITHGSKKINKGFSLIIFPEGTRSRPNEG LKAFSSSCGSLSVRNNVPILPICHNSGLFWINRRFIKKPGEVTVRIGPIIKGQNAREV TKEVYDWMKLNFKEIN" gene complement(267070..268413) /gene="glyS" /locus_tag="NT01SARS_1162" CDS complement(267070..268413) /gene="glyS" /locus_tag="NT01SARS_1162" /EC_number="6.1.1.14" /note="identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00389" /codon_start=1 /transl_table=11 /product="glycine--tRNA ligase" /protein_id="EJP71355.1" /translation="MTAKNMDELVALCKRRGFIFQSNEVYGGLQGVYDFGPLGVELKN NLKNAWWESMVYENDDIEGLDSSILTNPLVLKYSGHESTFSDPMVDCKSCQKRFRADQ VPPECKKEDLTEPRQFNLMFKTNVGPIDDGSSFAYLRPETAQQIFTNFKNVIDSTSKQ IPFGIAQIGKAFRNEITPRNFIFRVREFEQMELEYFVEPGNDEQALDEWVQKRLNWWR DQGVPIEKIELYNVPTDELAHYSKKTVDLMYMFPHGLEELEGIANRTDFDLASHSKKQ DELNITSNVEKNKHSNSKMAVQDKKGDWIVPYVIEPSAGVERGILAVLNEAFVEEDLG DGKTRVVLKLKPHLSPIKAAILPLKKNNEEIVTLSKEVKNSLQKLGLGRVILENTGNI GKGYRRHDEIGTPVCITVDFESIEDSTVTIRDRDSMDQVRVQISELAEIYKNKIK" gene 268669..269526 /locus_tag="NT01SARS_1163" CDS 268669..269526 /locus_tag="NT01SARS_1163" /note="identified by match to protein family HMM PF03279" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase family protein" /protein_id="EJP71356.1" /translation="MKFLFYLLSLVPKSLFEYLIDIYLSLGVYKYSSGFKVTSKNIEI AFPDRNKKDVALLAKRSFKESIISGYESIYTWGRNDAKVNSNILRIENNYLINNLKEN GLIAVSFHNRSVDMLLTWMNSQHTTTSLFKKIKNNTLNTYVKQRRESKNSKCYETNLS GVKEIFKSLKNNNIVCFAADQVPKRGFGEYIDFFNVKAYTTTLVQSLVNKTEANVMYF FIQTSPSNDLNIILKHCKENIHNDSGHSLWLNKDIEKFIMNRPADYSWEYKRFKRSKN LPNNFYKDT" gene complement(269527..270957) /locus_tag="NT01SARS_1164" CDS complement(269527..270957) /locus_tag="NT01SARS_1164" /note="identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933" /codon_start=1 /transl_table=11 /product="Trk system potassium uptake protein TrkG" /protein_id="EJP71357.1" /translation="MNLKSIINLFSILILFFSASYIFPIIVSAIFNDGSMHLFIYALI VIGLIGLIGFLSTRGSTNDMSNKEGFIIIVLFWIVLSIAGSIPFYLSGMSVIDSIFES MSGITTTGATVISNLDALPESILFYRQLLQWMGGMGLIVLAIAVMPLLGIGGGQIYRT EVPGAMGEQRLTPRIKETAQVLWLIYLGLTFLCGIFYYIGGMSVFDAVSHAMSTVAIG GFSTHDASIGYFNSAFIEFICILFMILSALSFTLHYFAVFKKKPLKYLYDPELKFFLS ILVVILSLAVLLSYASGSGLSFREITFHTVSMVTTTGFSISDSSEWPFSISFLLLIGA FIGACSGSVGGGVKSWRVLIMINHAYKNIMKIIHPNSVISLKIGTKNVDDEVATSVWG FFSIYVMSFLILLMLILASGVDFETAFSSVGACLNNLGPGLGAVSENYSSINTLSKTV LAFAMLLGRLEIFTLLVILTPMFWSK" gene complement(270957..272312) /gene="trkA" /locus_tag="NT01SARS_1165" CDS complement(270957..272312) /gene="trkA" /locus_tag="NT01SARS_1165" /note="identified by match to protein family HMM PF02080; match to protein family HMM PF02254" /codon_start=1 /transl_table=11 /product="Trk system potassium uptake protein TrkA" /protein_id="EJP71358.1" /translation="MKVLILGAGRVGGSLARALVNNGYDVAIIDQDKNALNSLEEKLD ILTIEGHASHPVSIKKSSADESTTVIAVTSDDEVNIIACQIAKKSFNVKKTICRITDS AYGNDLTVFGDNAIDILISPENEVKNHLKDLILHPGAHQIEKFADGKVNLVSVRARKK GKLVGRELKGIKDDMPETDAFIASIYRKGKPFIPSGETIIKENDEVYFISSEKNTDQI VDEFRDHEETYSRVMIVGGGKIGMSLAKEIEGEYKTKIIDSDEEKCASLSKQLDKAIV LHGSATDEDLLKSESISNIDIFCALTDDDETNLMSSLLAKKMGAKKTMIILNNPSYLG LVPGFIDIYVAPYRLTVSSVLQDLRDSDVTQDVMLKMDTGAEAVEGIVHANEYTSSLF GKSIKEISLPEGASIGAVIRHGELIMPRSEVELCLNDHLIIFLANKNMMSEVEVLFKT N" gene complement(272368..273288) /gene="fmt" /locus_tag="NT01SARS_1166" CDS complement(272368..273288) /gene="fmt" /locus_tag="NT01SARS_1166" /EC_number="2.1.2.9" /note="identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460" /codon_start=1 /transl_table=11 /product="methionyl-tRNA formyltransferase" /protein_id="EJP71359.1" /translation="MNVLYAGTPTNSADILKFLALSKKINIKGVITQNNKIGKRGNKL IESPVAIEAKKHKIPVFMPTDLNENEFKKALNDLDIDILLVVAYGRIIPEWLLKLPKL FPINIHFSLLPKYRGASPIQSSLLMGDKVTGVTYIKMNKLLDSGKIIKQFTCDINPSD NKNTLEKKLTELSINKLIEVLDYINQDELSFVDQDETKKTYCNKINKEDGLIDFREDS SSIHNKFRAYYGWPGTSFVHKDTTIKIHNLKLTNDLSSGKPGSFHKFDASGIYINTGD KVIVITDLQFPNKNIISSKDAFNSYKNFFV" gene complement(273306..273815) /gene="def" /locus_tag="NT01SARS_1167" CDS complement(273306..273815) /gene="def" /locus_tag="NT01SARS_1167" /EC_number="3.5.1.88" /note="identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079" /codon_start=1 /transl_table=11 /product="peptide deformylase" /protein_id="EJP71360.1" /translation="MSKKLKILVFPDPKLRTVAKKITKFDKSLEKLSDNMLHTMYDAN GIGLAATQVDEHIRLVVMDLSEDRNEPMVFVNPEYKVQKEHKLVEFEEGCLSIPGFNH NIARPDNIELKWQDLKGKEHEIKPEGMLSICIQHEIDHLEGKLMVDYVSALKRDRVRK RLLKEFKRK" gene 273880..274380 /gene="purE" /locus_tag="NT01SARS_1168" CDS 273880..274380 /gene="purE" /locus_tag="NT01SARS_1168" /EC_number="4.1.1.21" /note="identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole carboxylase, catalytic subunit" /protein_id="EJP71361.1" /translation="MSNSSLQVAIIMGSDSDLPVVEASFSILESFGVKYTKNVMSAHR TPHDVMDLIKRSEENGCKVFIAAAGMAAHLAGAVAAHSTKPVIGIPIESGGMGGIDSL LSTAMMPPGVPVATVAVGKSGAKNSAILAVQILATSDDELAQKLKDYKSNMREEVLEK DKKLNS" gene 274381..274941 /locus_tag="NT01SARS_1169" CDS 274381..274941 /locus_tag="NT01SARS_1169" /note="identified by match to protein family HMM PF01300" /codon_start=1 /transl_table=11 /product="putative ribosome maturation factor RimN" /protein_id="EJP71362.1" /translation="MKNKSLDIASSVEWIKSGKILVHPTEGIWGLGCDAFNEDAVNKI FKIKRRSKNKSFILLSESLDFLKKYIQDLNKEDEKFLENYWPGPVTFLIKYNQNLPKH LHTENEKIAVRVSNHLPIKSLLKQFSGLMVSTSSNLSGDGIIQDPIKILEFFESNDLA YYDEQLGQTKKPSKIIDLESKSVIRE" gene 274943..275848 /gene="hemF" /locus_tag="NT01SARS_1170" CDS 274943..275848 /gene="hemF" /locus_tag="NT01SARS_1170" /EC_number="1.3.3.3" /note="identified by match to protein family HMM PF01218" /codon_start=1 /transl_table=11 /product="coproporphyrinogen III oxidase, aerobic" /protein_id="EJP71363.1" /translation="MKHKIENNLIKIQSDIINAFESLESENGSIISLDEWKREEGGGG KTFVIENGSFFDKCAVNFSSIKGNELPKTALANNLNKEVNYGYKAMGVSVISHPKNPN VPTSHMNVRLFGILDKNSEIDEWWIGGGYDLTPFIVFEDDIKEWHRNAKACLDGINKD YYPCFSDNCNNYFKIPHRNERRGVGGIFFDNVTDLSLENSVKMLESVANAYLGSYMEI ANKRKNIKFSDTEKDFQLIRRGRYVEFNLIYDRGTLFGLQSNGRIESILASLPNNTKW QYKKTKEYIRLEKELLSTINKDWNV" gene 275841..276656 /gene="aroE" /locus_tag="NT01SARS_1171" CDS 275841..276656 /gene="aroE" /locus_tag="NT01SARS_1171" /EC_number="1.1.1.25" /note="identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507" /codon_start=1 /transl_table=11 /product="shikimate dehydrogenase" /protein_id="EJP71364.1" /translation="MSKLYKLGVVGDPIEHSLSPFIHSRFSRETNINIEYLPFKVKQD DFAPFVSEFFKDSLSKGLNITLPHKKNASMLDGVISKEAKYINAVNTIVKDEKKIFLY STDGVGFIDDIKNKGFMFEDNKILIIGAGGAAESILYTVAHNKPKEITLYNRTIEKAE KLCRKYSHISKTESVLDHNSPYDIVINSSSAGLTGEFRPIEELNISKSTIFYDLNYSL TETPFCKWAKGISNNVYDGIGMLVHQAAHSYNMWFGIFPDTNKVIQDIEDMRG" gene 276653..276862 /locus_tag="NT01SARS_1172" CDS 276653..276862 /locus_tag="NT01SARS_1172" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71365.1" /translation="MKRFVQFIAGAICPDCKSKDTIALNPTNDEIYCVKCNFVEKRPE TNDLKKNEEIKVINIKDYKKNKDNK" gene 277100..278149 /locus_tag="NT01SARS_1173" CDS 277100..278149 /locus_tag="NT01SARS_1173" /note="identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, subunit II" /protein_id="EJP71366.1" /translation="MTRGITDISNEVFELHMLIFWICVAIGVLVFSVMFYSMWAHTKK KNPVPAKFHENHKLEIAWTIIPFLILIAMAVPASKTLVKIYDDEAGDINIQVTGYQWK WQYRYLEDDVSFFSNLSTDLDEIYNLVPKGENYLQEVDEMVVIPAGKKVRFLITANDV IHSWWMPAFAIKQDAIPGFVNTAWTIVDEPGIYRGKCTELCGKNHGFMPIVVKVVEQD EYDEWVYGKKQEAIKLAELTTKEWTAEELVTRGESIYEVNCVACHQTSGEGITGIFPA LAGSDIVMNNKDRNIEILMEGVQGAAMNSFSYLSEVELAAVITYTRQSWGNAEKGDGE IVVPKDIVDYKEPKI" gene 278164..279747 /gene="ctaD" /locus_tag="NT01SARS_1174" CDS 278164..279747 /gene="ctaD" /locus_tag="NT01SARS_1174" /EC_number="1.9.3.1" /note="identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, subunit I" /protein_id="EJP71367.1" /translation="MSAVIENHHDDHHHGPAKGITRWLYTTNHKDIGTLYLWFSFAMF LIGGAMAMVIRAELFQPGMQIVEPEFYNQMITLHGLIMIFGGVMPAFVGLANWLVPMM IGAPDMALPRMNNLSFWILPFAFFILLSSLFMEGGAPNFGWTFYAPLSTTYAPPSVTF FIFSVHIMGASSIMGAINVVVTIMNMRAPGVSLMKMPLFVWSWLITAYLLIAVMPVLA GAVTMMLMDIHFGTSFFNAAGGGDPVLFQHIFWFFGHPEVYIMILPAFGIVSHIIETF SRKQLFGYSSMVWAMLSIAILSFVVWAHHMFTVGLPLAAEIFFMWATMLIAVPTGVKV FNWVATMFRGSLTFETPMLFAIAFVVLFTIGGLSGLMLAIVPADFQYHDTYFVVAHFH YVLVPGAIFSIMAAVYYWIPKWSGNMYDERLGKLHFWLSFIGVNVTFFPQHFIGLAGM PRRYPDYALVFADWNMVSSVGAFLFGFSQLLFLFIVIKTVMGGKKATDQVWDGAKGLE WTVASPAPYHTFSTPPKVD" gene 279747..280304 /locus_tag="NT01SARS_1175" CDS 279747..280304 /locus_tag="NT01SARS_1175" /note="identified by match to protein family HMM PF04442" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase assembly protein CtaG" /protein_id="EJP71368.1" /translation="MKKEAKKTLIRLVVAVPLMFAFGFALVPLYDVFCEVTGINGKVF QSEHSEELVTEDGRQIALQFISTNNENMPWTFKPSEQVLSIQTGKYHTATFYVKNTTN KTMMAQAVPSVAPSNAAEHLKKLECFCFEQQVLKPGEEALLPVKLLVSNELPSNIKNI ILSYTIFDITDYSEKTLAHHQMDME" gene 280309..281223 /locus_tag="NT01SARS_1176" CDS 280309..281223 /locus_tag="NT01SARS_1176" /note="identified by match to protein family HMM PF00510" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase subunit 3" /protein_id="EJP71369.1" /translation="MSGGSYYVPDQSRFPIFMAFSLFLLVMGASSTINNLDDPTSNSV YILYTGFACLFLTLFFWFRQVIKEHLAGLDSNQLKQSYVYGMAWFIFSEVMFFAAFFG ALFYVRTFAVPWLAGDGAKGGAITAIELWPAFESAWPVMTTPDQGNEYDLAKKSMAWP GWNHALQWLPLWNTIVLLSSSWTVHLAHLGLKKGNRKKFNAYLGVTVLLALIFVGLQA LEYYEAYAHYGLTLNSGIYGSTFFMLTGFHGFHVMMGGIMLAVMLARSVFAGHFEQHD HFGFEAASWYWHFVDVVWLMLFLFVYIL" gene complement(281224..281442) /locus_tag="NT01SARS_1177" CDS complement(281224..281442) /locus_tag="NT01SARS_1177" /codon_start=1 /transl_table=11 /product="DNA polymerase A" /protein_id="EJP71370.1" /translation="MITTLIYIVIPLLLLSLAGGLFFLLVDKGETGRKRTVYLLGLRV FFATVLIILIAIGLYTGELGNSVPWQDS" gene 281477..282178 /locus_tag="NT01SARS_1178" CDS 281477..282178 /locus_tag="NT01SARS_1178" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71371.1" /translation="MKKNKFNPGVRISIFFVFFAIVFFSLGLWQIERGQSKTDLLKEF KNNTLQEPNYLTEASKKWDRVFVEGKWDSSQQMLIDNVINRGVAGYKVLTPFRIAETN EVILIDRGWIKGNKSRDDLPNVNMVETFEKVSGILEYPELGLVLSDELISDAWPKVSQ TKNLEIITKEYNEKIYPLILLADPTSKNSLEYIKINPTNMTPVKHYGYSAQWFLMFIV LCVMYVWFGFKKNEK" gene 282168..282719 /locus_tag="NT01SARS_1179" CDS 282168..282719 /locus_tag="NT01SARS_1179" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71372.1" /translation="MKSKFFLAVLLLTPILVVTFSTLYFLMGMSPEGTKNNGVFFKSY FDLNDFKNGEGKQDLLKFDDGKWILSVYVTDIEASKESIYLARQLNVALNRDINKLKR VMFYSNKLLQDDLEEIKSLYPRLEIVEDSNGVLLNVLQRNSMLDFNSENPIFVIDPYG RAVMYFLPDTDPKLILKDLKVLI" gene 282719..283693 /locus_tag="NT01SARS_1180" CDS 282719..283693 /locus_tag="NT01SARS_1180" /note="identified by match to protein family HMM PF02628" /codon_start=1 /transl_table=11 /product="cytochrome oxidase assembly" /protein_id="EJP71373.1" /translation="MNQIKNLSLIGIFMAFVVIALGAWTRLVDAGLGCPDWPGCYGFV FWPNDEAEIALAESRFPMFPYDINKAIPEQVHRLFAASLGLLAIILVYLSFNKTNNKS MQRWSAFLLLLICCQGLFGYLTVSLKLLPIIVTIHLFGGFATLTLLYFIYLKSRNFEI LNQMNISGLKTIAAIAMLVLILQIFLGVWTSTNYASLACADFPTCQGSYIPEMDFKSG FNLNQEVGPNYLYGLLDNPARVAIHYSHRISALFVTLIFLILMSRLWFSDAAPLASTL GILLLTQITLGIINVVYVLPLYVAIAHNLVAACLLLAMFTVNYLAWKK" gene 283681..284556 /gene="cyoE" /locus_tag="NT01SARS_1181" CDS 283681..284556 /gene="cyoE" /locus_tag="NT01SARS_1181" /EC_number="2.5.1.-" /note="identified by match to protein family HMM PF01040; match to protein family HMM TIGR01473" /codon_start=1 /transl_table=11 /product="protoheme IX farnesyltransferase" /protein_id="EJP71374.1" /translation="MEKMTLLKSYYALCKPNVVYMMLICAFVGMLLAEEAVSSFSYLC ISLFGIALCASSAAAINQVIDRKTDASMTRTDQRPLPKGELSVMHASIFAMTIGVIGA LILFFYVNTLTMLLTIGSLIGYAFIYTVYLKRATPQNIVIGGLAGAAPPLLGWSSVTN TIDPYALLLVLIIFVWTPPHFWALAIYRKDEYAKESIPMMPVTHGVSFTKLQIVLYTI ILFIVSVLPYIVLMSGVIYLISALILSSVFLYYSLKLFYSDNDEDAMRTFQFSIYYIF LIFLALLADHYIIID" gene 284556..285191 /locus_tag="NT01SARS_1182" CDS 284556..285191 /locus_tag="NT01SARS_1182" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71375.1" /translation="MTVKKNILLIVIFIFAVLTLFINKLTSPRVLSTNELLINGLFLY EAPKEISDFTFFSSNKKEFSKSDLQGKWTLMYFGFTKCPDECPTTMYQISKLIKVLRE KNYPLDDKQWILVSIDPERDTPEQIDKYAKGFDEAFVGIVNNRPMLLSLATQLSVNNV MPSSDKSDHSHLDNHVNNIILLNPNGEFAGIFRPPFDLPRLSLTYQSVTSK" gene complement(285196..285990) /locus_tag="NT01SARS_1183" CDS complement(285196..285990) /locus_tag="NT01SARS_1183" /codon_start=1 /transl_table=11 /product="O-methyltransferase" /protein_id="EJP71376.1" /translation="MKTNKFYLHYLLFITSAVLFSSYNHAHSLENAINSKDRSSKNVS RDKYRNPYETLSFFEIKQDMKVVELSPGGGWYTEILANYIHSPGVVIAAHFDKDSDRD FYIRMRNNFENKVNQNPMYKNVKVVDLSSKLADEGSVDAVLTFRNLHNWIGPQIDLIF SNAHKALKQNGILGVVEHRANPGTSLEDMRKTGYVTEEYAINIAQKHGFTLISKSEIN ANPKDTKDHPRGVWTLPPVLRLKEQDKEKYLNIGESDRMTLLFKKL" gene complement(285992..286990) /locus_tag="NT01SARS_1184" CDS complement(285992..286990) /locus_tag="NT01SARS_1184" /note="identified by match to protein family HMM PF00107; match to protein family HMM PF08240" /codon_start=1 /transl_table=11 /product="NADPH:quinone reductase" /protein_id="EJP71377.1" /translation="MKALQCVELGLPDKLKVNEIADPELLPGHVLIENKAASVNFPDV LMIQGLYQFQPELPFTPGGESAGEVLAIGDDVKDIQVGDRVFAMTGLGAFAEKIVVHE NTVMKIPDTMDFETAAALPMTYGTSLYALKQRAELKEGETLLVLGAAGGVGLATVELG KAMGARVIAAASTQDKIDLCIAHGADEGFIYESGKLDKNQQKELSSKIKELTGGMGAN VVYDPIGDNYSEPCIRATAWDGRYLVIGFAAGEIPKIPINLALLKGMKIVGVFWGAWV GMHPDENRNNFEELFKLHSEGKINPEVSDSFSLNDGALAIAHLMDRKAKGKVIIKI" gene complement(287000..288505) /gene="gshA" /locus_tag="NT01SARS_1185" CDS complement(287000..288505) /gene="gshA" /locus_tag="NT01SARS_1185" /EC_number="6.3.2.2" /note="identified by match to protein family HMM PF04262; match to protein family HMM TIGR01434" /codon_start=1 /transl_table=11 /product="glutamate--cysteine ligase" /protein_id="EJP71378.1" /translation="MNNDFLEKRLKELSKLNFFNDLVINRGIEKEFFRVNRKGDISER EHPQSLGSALTNKFITTDFAEAQLELVTPTFDDIDELHAFLTSLHIFVIDNINEDETV WPLSMPPHIKDESKINLGYYHQSNTGLLKHVYRKGLKVRYGSTMQCVSGMHYNFSINN ESLSKLSLNNSQEDYDEIYLGLIRNFKRIFWFVLSEFGQTNVVDKSFVNGRFNNLSKL SNNDMYQKNATSLRMSDIGYVSDAQKNLNIKYNSLEEFLRKIRSAITDPYPDFQNKGL IDNDGEFHQISDGIIQIENEYYDSIRPKRASEENLRPYNQLKKFGIEYLEIRGIDIDP NEPTGISKNHIKFLDMILIYCLICPSKDISNEEKIRIDENDKKTVYDGRDYGIKLSIN SVEETLGDAREKIYSDLIKLACCFENSESLIDAINFVKTYSRGILPKTSYHEHGLNKA KEVVEFFKKANDKYAESIKMEAELSIDKLNSLQKNSSEEMNEYVKNYNINL" gene complement(288498..290045) /gene="pckA" /locus_tag="NT01SARS_1186" CDS complement(288498..290045) /gene="pckA" /locus_tag="NT01SARS_1186" /EC_number="4.1.1.49" /note="identified by match to protein family HMM PF01293; match to protein family HMM TIGR00224" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxykinase (ATP)" /protein_id="EJP71379.1" /translation="MDTSSQTSEALELTNEELITAAVNNGEGVIANNGAFSTETGERT GRSPNDRFIVKEPGSSNLIDWGDVNIPFEEDNFNSLWDKVETYLAEKDRYVSRVHVGS HSEHYLPVRVTTETAWHSFFARLIFVCSENYNPNNKKEWEILSAANFQCDPESDGTNS ESCVVINFAQRKVIIAGMKYAGEMKKSMFSVQNFLLPEKNVLPMHCSANVNKNGNVAL FFGLSGTGKTTLSADPKCSLIGDDEHGWSPGSVFNFEGGCYAKTINLSEENEPVIFNA IKHGSVIENVFLNNNEPDYSNTSLSENGRCCYPRSHIENAVEANAAGEPKTVIFLTCD LTGLIPPVSILSKEAAAYHFLSGYTAKVGSTEMGSTSDIASTFSTCFGAPFFPRPADV YADLLMKRIEGYGSKVFLVNTGWTGGPYGKGSRFDIPVTRRIVNAIQDGELDNVETQM IPGLNLEVPLEIEGVESILLTPEKTWEDNEEYQKYLKDLIYKFQENFKKFNVNPDIVS AGPGFNE" gene complement(290271..290756) /locus_tag="NT01SARS_1187" CDS complement(290271..290756) /locus_tag="NT01SARS_1187" /codon_start=1 /transl_table=11 /product="putative disulfide bond formation protein B" /protein_id="EJP71380.1" /translation="MLNLIKEVYQNYFEIASAMFASLVIVLAYILDKVFFLQACAMCI LTRYAFGLIILTSLISYLLKSKFSYLLMVLSSSFGIFITSKQIYIQNLTVEELSSLSG CGMPFHTMVDYFGLIEAITRTLAGGPSCAEDGMRFILNFAEWGLVFFVFYFILSLKKV L" gene 290810..293482 /locus_tag="NT01SARS_1188" CDS 290810..293482 /locus_tag="NT01SARS_1188" /note="identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="EJP71381.1" /translation="MKDRIFVIDGSSYLYRAYHAMPPLSTSKGQPTGAVKGVTNMLMN LKKDSEGSPIIVVFDAKGKTFRNDIYSEYKANRPPMPDELRLQLQPVKSICKAIGFPL IEIEGVEADDVIATITKMAKDAKYKCVVSSLDKDLMQLVEDPDTTLMNTMKHEIFNED KVFEKFGVKPSQIRDMLALVGDSSDNIPGVSKVGQKTAAKWLNEYGNLEGIISNADSI KGVVGDNLRNSLDDLDRNIELVSLKEDVDLNLKFEDLLICNPDEEELEKIFNELEFAA INNNKDEKSPKKLGKYKTVLDKKDLDDWIKKIKNSKAFAIDTETDSVDTVTANLLGIS ISVNENEGCYIPLGHTYEDCPKQLSMDYVIKTLGSVIEENQNKAVGQNLKFDIPILSR HGINITNFLADTMLMSYVLNSTATRHGMDRLAEYYLNYTTTKYTDVTGTASKQISFAE VKLDVATNYAAEDADITLRLFNVFSPLLKDKPVQKKLLEDLEYPLVHVLARVEQNGAK IDKKKLANHSQELSEKIDELSKQAFKIAGEEFNLDSPKQLLEILYEKQGLPVLKKTPK GQPSTNEDTLQRLSEEYELPRIILQYRTLAKLKSTYTDSLINIENPKTKRIHTSYQQA VTSTGRLSSTEPNLQNIPIKTAEGRRIREAFVPEKGNVLISADYSQIELRIMAHLSKD KNLTYAFNNDVDVHSSTAAEVFGVSIDNVSQDQRRSAKAINFGLMYGMSAFGLTRQLG IPRGEAQEYLDTYFARYTGVRDYMNNIKAQAKEDKFVETIMGRRLYLNEINAANGLRR QAAERAAINAPLQGSAADIIKKAMLDIDELILNELSEVQMIMQVHDELVFECPKSKAD AVMEKMKDTMEKTVELNIPLIAEAAIGSNWNEAH" gene complement(293490..293669) /locus_tag="NT01SARS_1189" CDS complement(293490..293669) /locus_tag="NT01SARS_1189" /codon_start=1 /transl_table=11 /product="isoprenylcysteine carboxyl methyltransferase family protein" /protein_id="EJP71382.1" /translation="MSFILLGLTLKFNLIGGLIFTGLFMLFITIFQIKPEESAMEKLF DQEWKDYVCNVRRWL" gene 293659..293883 /locus_tag="NT01SARS_1190" CDS 293659..293883 /locus_tag="NT01SARS_1190" /codon_start=1 /transl_table=11 /product="dihydroorotase, multifunctional complex type" /protein_id="EJP71383.1" /translation="MNDIPKYIGFLEYLKIPVTTREEAFSIDIGLMVVSWFLNEIIAV TRTDIPTIKEIILNELSIEKLNSGKNDFDK" gene complement(293938..294846) /locus_tag="NT01SARS_1191" CDS complement(293938..294846) /locus_tag="NT01SARS_1191" /note="identified by match to protein family HMM PF00561" /codon_start=1 /transl_table=11 /product="putative hydrolase, alpha/beta fold family" /protein_id="EJP71384.1" /translation="MKKVLSLLFIFLFIPIFLYFSLDRENVDINEFRLNSGYQELKLT EGVTSYKDLGDKNNEVIVLVHGATFGSLAYEEYVNVFLENNYRVITYDQYGRGFSDRV DTHISIELMEKQLKELIEHCEAENVILYGVSFGAAVAAKYASNNLENVSFIGYQVPLI NSANVPLLSIVKIPLYGDLLSRVLLVPNVLKRIEEYEDLMSEKLLDHYVGQFEVKGTE RFFKKFFLGNAMGNRLNDHNIIGTNSIPSYFAYAEDDLEIDSKLVEEAIKSYNNPIVK KYSGGHFFSSGIEKQVAQDFVDSIKK" gene complement(294863..295360) /locus_tag="NT01SARS_1192" CDS complement(294863..295360) /locus_tag="NT01SARS_1192" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71385.1" /translation="MLEYQKQDCDLTLEEGLECYYRSFPDTTEVFEDDDNSGTLLRDH DCTHVIFGLDISIEQESILDSWVVWGSKWQLKYIWGYQSLPQIKQLYKDLYKEFGILG FLKIFWKLGGIKRKVMFRALKMKKKWPFKMPEKYLKMKISDLREEHGIKILLPEELQY TPIER" gene complement(295360..295941) /gene="ysxC" /locus_tag="NT01SARS_1193" CDS complement(295360..295941) /gene="ysxC" /locus_tag="NT01SARS_1193" /note="identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03598" /codon_start=1 /transl_table=11 /product="ribosome biogenesis GTP-binding protein YsxC" /protein_id="EJP71386.1" /translation="MKNLFKNTEFVFGVTDYKKLPKDIGNEILLAGRSNAGKSSALNA LTENKKLARISKTPGRTTEINFFRVNDDLMLLDLPGYGFAKSSRSKKKDWGSLLGQYF QKRKALAAVIIFMDIRHPLKESDWEMIHLCKDFDVPCIPVLTKSDKLSNNNISKAINF VKDKIPNSNPMAVSSKDIVGFDKLSKEMLKFLA" gene 296008..296673 /gene="cycA" /locus_tag="NT01SARS_1194" CDS 296008..296673 /gene="cycA" /locus_tag="NT01SARS_1194" /note="identified by match to protein family HMM PF00034" /codon_start=1 /transl_table=11 /product="cytochrome C4" /protein_id="EJP71387.1" /translation="MKYFLIFFIFLGSINFLFAAEESSKKIELPDNFVSGDSERGSQL VESCSACHGTDGNSISSDWPKLAGQNQKYLYEQLQYFKDGVRMNALMMSVTPYLQTLD NEDLLDIAAFYSNYETSVGQAKNDEELLNVGTQLYRFGNMKKGIPACTSCHAVYGQGN SLAGFPAVAGQQIGYLTSTLKAYRSKERNTGELSEMMQSIAQNLSDDEIDALANYMHG LYQ" gene 296670..297293 /locus_tag="NT01SARS_1195" CDS 296670..297293 /locus_tag="NT01SARS_1195" /note="identified by match to protein family HMM PF01323" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein DsbA" /protein_id="EJP71388.1" /translation="MKILFNNKLGLIFILLFSLSAKAEFRLGVDYTMVSNPMPVKQDG VVEVMESFWYGCNACYSFEPSINAWAAEQDSDVKLVKMPITWSGIHQLHAALYYTIES LKLDPSTHSAVFVTIHKEGNFLQSPAKIQEFLEKFGVAPELTSQYLNSFTVKQRVNRG IKYAKQLKIDGVPTIIVDGKYVVQSKGSFGRMLEVVDYLVELQKPVS" gene 297299..297889 /locus_tag="NT01SARS_1197" CDS 297299..297889 /locus_tag="NT01SARS_1197" /note="identified by match to protein family HMM PF00127; match to protein family HMM TIGR02375" /codon_start=1 /transl_table=11 /product="pseudoazurin" /protein_id="EJP71389.1" /translation="MNKKKLLFIIPLCFLVLFNGKKYDEAVKERLFLPIKLCLEGEDC GTVSQASQMSANVSQSEVKKVELSEGSEHVVKMLNVGEGGQMIFEPAVIKVSKGDTIH FKATDMSHNSVSVDGMVPSGASPWAGQLNQDISVTFDTEGVYVYQCDPHVMMAMIGVI QVGDPINMEEIKKASQDYRSKFVMNAERIDNYLNQL" gene complement(297886..298116) /locus_tag="NT01SARS_1196" CDS complement(297886..298116) /locus_tag="NT01SARS_1196" /codon_start=1 /transl_table=11 /product="putative glutamyl-tRNA" /protein_id="EJP71390.1" /translation="MSDKDLSSAIRSIIEKEINKVSKLVPKEALNNIEKNISPQIDQI IEKSGFVKKSKYQNLKDLVDDLEKRISQLEKD" gene complement(298109..298813) /locus_tag="NT01SARS_1198" CDS complement(298109..298813) /locus_tag="NT01SARS_1198" /note="identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549" /codon_start=1 /transl_table=11 /product="HAD family hydrolase" /protein_id="EJP71391.1" /translation="MNKKIELITFDLDDTLWDNMPTIRKAEIDTRKWIEDKVGRIEWG DFDDFLNLREELIKEDESIAWDISKLRKEIFRKKLIHIEPESYRNELVDKAFEIFIQK RHEVEFYDGVEESIEQLSQKYTLGILTNGNADIFKFEIGKFFDFSISSLEAKDSKPNR SHFDQALNKINSSNYSDMLHIGDHQINDVFGAFNLGIEALWFNNTNAVWSQSFKKPDE FDSWYKLPQIIKEKYE" gene complement(298806..299705) /locus_tag="NT01SARS_1199" CDS complement(298806..299705) /locus_tag="NT01SARS_1199" /note="identified by match to protein family HMM PF00589; match to protein family HMM PF02899" /codon_start=1 /transl_table=11 /product="tyrosine recombinase XerC" /protein_id="EJP71392.1" /translation="MENDKFIHKNIKDYILYVSDVKNLSKNTSLSYERDLKKFAAFIN SLNISQYNQIDDEVCSAWIGDLYTSGNNPRSIQRHLSSAKGFFRFLKKNGLISSSPLD LVTAPKIANTLPDVLSPEDVEQLLNFKPSSVIEIRDMAIVELMYSSGLRVSEAININI TDFEDDMAFLRVLGKGSKTRLVPLGKFAIKAVENWLNERKKISNDTEALFLNSKGSRL SIRSVQLRLKKMAIKQGLPPIHPHMLRHSFATHMLESSGDLRTIQELLGHSSLSTTQI YTKLDYQHLAKIYDEAHPRAKNE" gene complement(299708..300331) /locus_tag="NT01SARS_1200" CDS complement(299708..300331) /locus_tag="NT01SARS_1200" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71393.1" /translation="MSEKLDPKAVEIFLLENLDFFETRESLLSEMNFKHSQSSASSIL ERQVLKLREEHKNIIELLKSYIDTASINEDLFNKSKDLTLKILESSSNKKVINKVNES FKKDFNVDKCLLEFFDNKQIDEIEKKTELSMHKGAIHCGSFSNEKMSYLFNGDEKIES LVIAVIVLQEEIGLLKLGSYDRTKYLGDEDTTFIEYIRDVLEKKLMK" gene complement(300324..301106) /gene="dapF" /locus_tag="NT01SARS_1201" CDS complement(300324..301106) /gene="dapF" /locus_tag="NT01SARS_1201" /EC_number="5.1.1.7" /note="identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652" /codon_start=1 /transl_table=11 /product="diaminopimelate epimerase" /protein_id="EJP71394.1" /translation="MVNFEKWHGNGNDFVIINSIDKKIRITKTFIKKTANRNKGIGFD QLIFVTLPTKESHDFFIRFFNSDGSEAGMCLNGIRCAARYIWNNSFAPLNNICIKTKT KVLTCSPVGKSSVNVEIIVPEKINHPNLERKISKKISKNFFLLNTGNNHLFIKFNSIE KIDLNGIYSELSNDIQKHEMNLSIFKKTKNIIDLRTYENGVGETLSCGSASLCVASNF LSKKDDLITVKTFGGEIIFKKIKDAILMKGPTTFIYKGNINE" gene complement(301099..302334) /gene="lysA" /locus_tag="NT01SARS_1202" CDS complement(301099..302334) /gene="lysA" /locus_tag="NT01SARS_1202" /EC_number="4.1.1.20" /note="identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048" /codon_start=1 /transl_table=11 /product="diaminopimelate decarboxylase" /protein_id="EJP71395.1" /translation="MSYFSYKNNILYCEKVKISDIADKYGTPAYIYSKKTLSENFDAY ANAFDKKSGLICFSVKSLSNLSILKFLSEKGSGFDIVSGGELERTLLAGADPKKIIFT GIAKTDEEILFGIEKNILSFNIESKSEMMRIEKIARDKKKLVDVAIRFNPEIDAGGHE YIKTGRKKDKFGILVSETLKLAKYISNSEHLNLIGLSCHIGSQIFELDDFKAAANFTK KLAEEVNKMNIELKFLDVGGGLGISYTDSNFPSPKDLLKIIENELQDRDEKIILEPGR SISGNAGIMISKIEYIKENYLIIDAGMNDLIRPALYNAKHSVINTTKGAGNNGSWTIV GPICESSDVLAKDYEMEAAEGDIIAVETAGAYGHVMSSNYNSRRKPPEILVSNDKYEL IRKRETYEDLLKNEVDLSG" gene complement(302331..302462) /locus_tag="NT01SARS_1203" CDS complement(302331..302462) /locus_tag="NT01SARS_1203" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71396.1" /translation="MDICIHNMIYELQKNFLFSFFIYFGWLWRKRSLDILETKFTLI" gene complement(302481..303875) /gene="ahcY" /locus_tag="NT01SARS_1204" CDS complement(302481..303875) /gene="ahcY" /locus_tag="NT01SARS_1204" /EC_number="3.3.1.1" /note="identified by match to protein family HMM PF00670; match to protein family HMM PF05221; match to protein family HMM TIGR00936" /codon_start=1 /transl_table=11 /product="adenosylhomocysteinase" /protein_id="EJP71397.1" /translation="MENDYKVADINLAEFGRREISLAENEMPALMALREKYRSEQPLA GAKIMGCIHMTIQTAVLMETLIDLGAELRWSSCNIFSTQDHAAAAMAARGVPVFAWKG ETEEEFEWCIEQTICKDGKPWDANMILDDGSDLTAMVHEKFPEMLETIHGVSEETTTG VHRLKEMLEKGELKVPAINVNDSVTKAKNDNKYGCRHSLNDALKRGTDMLLSGKKGLV IGYGDVGKGSAASLAQEGMIVSVVESDPICAMQACMDGFSVVSCYKDGVVTRNAADIN MQVMGDTDLVVTTTGNVNVCDSAMLSTLKNTAVVCNIGHFDNEIDTAFMRENYYWDEI KPQVHRIFRDTAPDGTPDLSSKNYIILLAEGRLVNLGNATGHPSRIMDGSFANQVLAQ IHLYKQGFANINDEDTRAEMITVEVLPKKLDEEVASLMVEGFGGTVTKLTKDQADYIN VPQDGPFKEESYKY" gene complement(303899..305053) /gene="metK" /locus_tag="NT01SARS_1205" CDS complement(303899..305053) /gene="metK" /locus_tag="NT01SARS_1205" /EC_number="2.5.1.6" /note="identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034" /codon_start=1 /transl_table=11 /product="methionine adenosyltransferase" /protein_id="EJP71398.1" /translation="MSYIFTSESVSAGHPDKVCDQISDAVLDAYLTEDPNSRVACETM IKNNMVYIAGEITSTGSPDLEPIVRKTISDIGYDTDDYGFNGETCEFTNLVFEQSPDI SQGVTEGEGENLEQGAGDQGLMFGYACTETDSLMPLPIDLSHRLVKKQADVMKEGGLS WLRPDAKSQVSAIYSDDGKTIEGLSAIVLSTQHDEDVTQDDIKEGVMEHIIKPIVPSE WILDSTKIYINPTGKFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDR SAAYAARYVAKNIVAAGLADYCEIQVSYAIGVAKPTSINVNTFDSEKISKDAIEKIVE EHFDLRPKSLINMLDLKRPIYLPTAAYGHFGRTDIDLSWEKTDKASEISQ" gene 305218..307206 /gene="tkt" /locus_tag="NT01SARS_1206" CDS 305218..307206 /gene="tkt" /locus_tag="NT01SARS_1206" /EC_number="2.2.1.1" /note="identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232" /codon_start=1 /transl_table=11 /product="transketolase" /protein_id="EJP71399.1" /translation="MQQSDHINVLRFLSADAVQKANSGHPGMPMGMAEIATALWSKHL RHNPKNPTWFNRDRFVLSNGHGSMLLYSLLHLTGYDLSINDIKDFRKLKSKTPGHPEY DIDIGIETTTGPLGQGIANAVGMAVAEKILAAEFNKDDIKPIDHFTYVFLGDGCLMEG ISHEACSFAGTHNLGKLICFYDQNGISIDGEIEHWFTDDSVKRFESYGWQTICVDGHD IEDIDGAIHKAKEEVNKPTMIFCKTTIGYGSPNKSGTADVHGAPLGDEELKETREVLG WNYKPFEVPQEVYDFWNFKEEGASFNDSWNKLLKDYEKKYPNDSLELHRRIDGHLPNN FQESYESFLNECNSNNLSMATRKASKACLDFFVKEMPELIGGSADLTPSNNTFSSSSS TFSNENASGNHINYGVREFGMSAIMNGMVLHGAIKPYGATFLVFTDYARNAVRLSALM KLPNIFVYTHDSVALGEDGPTHQPIEHMVTLRSTPNLNNWRPADLVETAVSWKSAVSS QKTPTCLIYSRQGTSAIKRSPDQISMIDMGGYLLEESDDFDLTIVASGSEVQLALDAA KELKNDSINANVVSMPCLDIFLDQDKEYQNKIINPEKPVLVVECAHPNSWYRILNRND KVIGIETFGESAPGSELLNHFGFNTDNVIKTAKSLIND" gene 307199..308353 /gene="pgk" /locus_tag="NT01SARS_1207" CDS 307199..308353 /gene="pgk" /locus_tag="NT01SARS_1207" /EC_number="2.7.2.3" /note="identified by match to protein family HMM PF00162" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="EJP71400.1" /translation="MINLSSLDIANKNLVIRVDMNVPLKDSEVLDATRIKACLPTIEH ALSNNARILLISHLGRPSEGNFEEKFSLQPVAEYISNLFNEKCELINSLESKDIFNGK FNVQLLENIRFFEGEKSNSAKLGKILASLGDIYVFDAFGTAHREQASTHSAIEQANIA CAGFLLERENRNLTKVLNNYENPYIAVIGGAKVSTKLELIKSINNEAQNIIVGGGIAN TFIKAAGFKIGQSLYEESMLDIAKSILEKNKIVLPDKVITSETFEGKNIQKKSLDEIE DNEMILDLLLKEETYSILDSAKTILWNGPMGVFENKLFEQGTRDLSETIAKSSAFSIA GGGETLSAINKYINTDDVSYCSTGGGAFLEFMEGKTLPSISALNAKNTER" gene 308355..309362 /locus_tag="NT01SARS_1208" CDS 308355..309362 /locus_tag="NT01SARS_1208" /EC_number="4.1.2.13" /note="identified by match to protein family HMM PF00274" /codon_start=1 /transl_table=11 /product="fructose-bisphosphate aldolase class-I" /protein_id="EJP71401.1" /translation="MTLEEIATYIVSDGKGILAADESNPTCGKRFDSIGVESTEENRR DYREMLFRSEGMNGNIGGVILFDETIRQSASDGTLLRDLISDQGALPGIKVDKGLQPI EDCPGETVTVGLDGLDDRLKEYTEMGAKFTKWRAVIKIGDGIPTDECIDANMDALAQY AKSAQNNGMVPIVEPEVLMDGDHSIDDCYDATERSLKSLFKHLEKYEVNIKGTLLKPN MVTSGSEHEVQAGIDEVANKTIECLVKNVPQDLPGVAFLSGGQSDVLATAHLDAMNKI GGFSWKLSFSYGRALQAAALKAWGGKPENVFIAQDELSHRAEMNKLASLGQWEKDLEE R" gene 309366..309803 /gene="dtd" /locus_tag="NT01SARS_1209" CDS 309366..309803 /gene="dtd" /locus_tag="NT01SARS_1209" /EC_number="3.1.-.-" /note="identified by match to protein family HMM PF02580; match to protein family HMM TIGR00256" /codon_start=1 /transl_table=11 /product="D-tyrosyl-tRNA(Tyr) deacylase" /protein_id="EJP71402.1" /translation="MLATVQRVSEASVIINDLEFSSIKKGVLIFVCVEQHDTSQIVKE MINKIYNFKMLDGSKGITSSSLKNQNEDILIVSQFTLAAITNRGNKPSFHKAAKPEDA KLLYDEFVTEFKKVSDKVSEGKFGAFMEIMIKNSGPVTFNFSI" gene 309810..310391 /locus_tag="NT01SARS_1210" CDS 309810..310391 /locus_tag="NT01SARS_1210" /note="identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730" /codon_start=1 /transl_table=11 /product="decarboxylase family protein" /protein_id="EJP71403.1" /translation="MKNISIFCGAHKGKNPKYAEEAKLVAKFIAKKGINVVFGGGNVG LMKIISDTALDNGVEVLGISLKSLHALELANPRLKEIVVADTLLDRKDEFMARSDAFI VLPGGVGSLDELAEIMASNQLGIINKPVGILNTDGYYDYLLKWFDKAVSEGFISSANL KELLISDSPEELVEMVSSHKRPSDDDWTNRLGL" gene 310395..310988 /locus_tag="NT01SARS_1211" CDS 310395..310988 /locus_tag="NT01SARS_1211" /codon_start=1 /transl_table=11 /product="tripartite ATP-independent periplasmic transporter DctQ" /protein_id="EJP71404.1" /translation="MSFEEIRVITIVYIAVFLPLIILFLKKTKLPDWIPTLYIVGIVI CALGWELWFTYGWLDGDAVDIRRSEGLNFWLPKDLNWLMNSMGDAGTVLLGGIWLMWI THNKNILIFKQWKWSAFFVLLLWCVSQNIFVEMFLYHDQLSEGKTLSWAPLSPFGPYF NPTLFEFNERTIMLQTQIPWIVLPWFFYKTVINLNKN" gene complement(311004..311708) /gene="tatC" /locus_tag="NT01SARS_1212" CDS complement(311004..311708) /gene="tatC" /locus_tag="NT01SARS_1212" /note="identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945" /codon_start=1 /transl_table=11 /product="twin arginine-targeting protein translocase TatC" /protein_id="EJP71405.1" /translation="MSENSISSHLLELRSRLLKVIYLFIIFSIAGMPFATQIYSFVST PLIELMPVGSSMIATEVASPFMAPIKLVIYIALVFSMPWLFYQIWMYMSPGLLDSEKG FAAPLMISTVILFFSGISFAFFIVCPIVFKFFIEMAPESILIMTDINQYLSFVFKLVF AFGIAFEIPIATLLLIRSGIASKKSMKSARPYLIVFFLFVGMLLTPPDVFSQLFLAIP MWLLFEIGLIISKDKT" gene complement(311701..311946) /gene="tatB" /locus_tag="NT01SARS_1213" CDS complement(311701..311946) /gene="tatB" /locus_tag="NT01SARS_1213" /note="identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410" /codon_start=1 /transl_table=11 /product="twin arginine-targeting protein translocase TatB" /protein_id="EJP71406.1" /translation="MFQIGFLEILIIFVIGLIVIGPNKLPDLVKKIIKLYKKLEIKFN NFKSDFEADIGSEELKKDVFNELRMEELDQNNQSKDE" gene complement(311949..312113) /locus_tag="NT01SARS_1214" CDS complement(311949..312113) /locus_tag="NT01SARS_1214" /note="identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411" /codon_start=1 /transl_table=11 /product="Sec-independent protein translocase protein TatA/E-like protein" /protein_id="EJP71407.1" /translation="MGFGGISIWQLLIILVVVLLIFGSGKLKSIGSDLGSSIKGFKKA VKEDTEEKEE" gene complement(312122..313603) /locus_tag="NT01SARS_1215" CDS complement(312122..313603) /locus_tag="NT01SARS_1215" /note="identified by match to protein family HMM PF03109" /codon_start=1 /transl_table=11 /product="putative ubiquinone biosynthesis protein UbiB" /protein_id="EJP71408.1" /translation="MNIIIVIYELLKMFFIGIQKGIFINPNGKKLSSYLESLGPIFTK FGQLLSTRTDVLDYETAKELESLTDSCKPFNVSQLKKIIEKELNDKIENIFEYFDDEP LAAASLAQVHSARLKTGQDVVIKVLRPNIERKVKKNLRLLKSAAKIFSYVYKESYRLK PNEVVKDYESTILKELDLKLEASNTNLTRKNFLDSEELYIPEVYWDLTTSNVMVLEKI DGIPCTDIDQIESYGIDKKTLAENGVMIFLNQVFRDNFFHADMHPGNIFVSKENPEKP GYIAVDCAITGSLSNDERYTLARMLQAVLKQNYKSLANLFINSGWVNANTNNIELENT LRACCEPIFEKPLSEIEFGKLLLYLFQSTRQYGLSLQTSLVLLQKTLIHIEGMGRQIY PDLDFWGIAEPYLDNWLAEQVSPIKLKNYIIENKEDILIKASEIPSVVFEAIDEIRSF SKNKNASNQRIIELENQLSKQKYINRAIAVAIIVSITIIFIVS" gene complement(313600..314061) /locus_tag="NT01SARS_1216" CDS complement(313600..314061) /locus_tag="NT01SARS_1216" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71409.1" /translation="MEESSPNFTSSLSEIYPITFTINIEGFKKIFISLDHQASSIGFE EENTSQFEIKGSIKDFIKTLSTRKLHKQLITGDAELAVVFFNAVIKLDIDILYLINKN FGDIPALMTKEALNIIFNHERTHQNKEERKIRNRLRKLSIRMDRLEAMRDI" gene complement(314096..314836) /locus_tag="NT01SARS_1217" CDS complement(314096..314836) /locus_tag="NT01SARS_1217" /note="identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934" /codon_start=1 /transl_table=11 /product="ubiquinone/menaquinone biosynthesis methyltransferase UbiE" /protein_id="EJP71410.1" /translation="MNKKTHFGFQEVDEADKSKFVGDVFTSVAKNYDVMNDAMSFGMH RLWKKILVELASVGEKDVILDVASGTGDISKLISKEYPNTKVFMSDINYEMLDEGRNR AIDESFDDNCYFCQLSGETLPFKDNTFDLITVGFGLRNFTNKEYGLKEMRRCLKKNGK LLILEFSKPMNPIFSKLYDWYSFNILPRLGSMLANDSDSYKYLAESIRMHPDQERLKQ MMESAGFNECRFHNLLNGVVAIHIGYHD" gene complement(314836..315696) /gene="rsgA" /locus_tag="NT01SARS_1218" CDS complement(314836..315696) /gene="rsgA" /locus_tag="NT01SARS_1218" /note="identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157" /codon_start=1 /transl_table=11 /product="ribosome small subunit-dependent GTPase A" /protein_id="EJP71411.1" /translation="MQKVQTGQVIEFYSNSCLVKTKFGKFDCVAIKNVVVGDFVEVEI IQDSKKPLGKIIKVNQRDSKISKRIKNQNKLFAANISHVGILVTQIPKTSSEFIDKWL VKANASNIKPFLINNKVDMKQEKNYLEKLDIYKNINIKIIDTSAKYDKNISELKEFLT DKCVLFVGNSGAGKSTLTSKIIGKNLKISSLSNDQGVHTTSVSSLYEIDSNIKIIDSP GMRDIAIENYSEREIINGFEEIHNASKYCKFNNCNHIDNEGCNITKKLLNDEINESRY NNFIKFLNIK" gene 315738..316286 /locus_tag="NT01SARS_1219" CDS 315738..316286 /locus_tag="NT01SARS_1219" /note="identified by match to protein family HMM PF00929" /codon_start=1 /transl_table=11 /product="oligoribonuclease" /protein_id="EJP71412.1" /translation="MKTLQSRDNLVWIDLEMTGLDPEKEKIIEIATLVTDSDLHIIAE GPNLVISQPNEILESMDEWNLTHHGSSGLIEEVKKSDVTEQIAEIETLEFISKYVGEK VSPMCGNTVSHDRRFLSKYMPRLESYFNYRHIDVSSFKETAVRWMNEAQVYEKKGSHR ALGDIKESVEELKFYKQLYMPD" gene complement(316288..316614) /locus_tag="NT01SARS_1220" CDS complement(316288..316614) /locus_tag="NT01SARS_1220" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71413.1" /translation="MKTKNVYKIIFIQLGEIYEVFAKQIYQSDMYGFIEVEEYIFNKD KQLVVDPSSEKLKNEFDQVQRSYIPINSVIRIDEVNETGEAKIKENKDKISPFPLNIQ PSSKKD" gene 316671..317996 /gene="miaB" /locus_tag="NT01SARS_1221" CDS 316671..317996 /gene="miaB" /locus_tag="NT01SARS_1221" /note="identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574" /codon_start=1 /transl_table=11 /product="tRNA-I(6)A37 thiotransferase enzyme MiaB" /protein_id="EJP71414.1" /translation="MTKKLFIKTHGCQMNEYDSAKMFDLLEEKEDFEIAESEDQADLL ILNTCSIREKAQEKVFHQIGRWRKIKDKNPDLKIAIGGCVASQEGENIIKRAPAVDIV FGPQTLHKLPELYKEKNRTDNNQVDISFPKLEKFNHLPVQGKGEPSAFVSIIEGCNKY CSFCVVPKTRGHEVSRSIEDILNEVSILADKGTREIHLLGQNVNNFKGTLNGEKSTLS KLIELTAKIENIDRIRFTTSHPHEFKDDLVEVYDRVPELVSHVHLPVQSGSDRILKLM RRRYNVEKYLNLVDKIRVVRPDMSFSSDFIVGFPGETNEDFQDTMNIINEVRYDESFS FIYSPRPNTTASDMEDDVTNEEKKERLKILQTRLSQLSFGFSRKKVGTNQDCLIYGQS KRDPGQLQGRTICNRVVNFQSNDTDLVGQIVNIQINEALPNCLRGNLQN" gene 317996..318958 /locus_tag="NT01SARS_1222" CDS 317996..318958 /locus_tag="NT01SARS_1222" /note="identified by match to protein family HMM PF02562" /codon_start=1 /transl_table=11 /product="PhoH family protein" /protein_id="EJP71415.1" /translation="MSKDSALTKIELNPSDANVMVRFVGELNENLKFVEKTFNVKIFQ NGNNLKIQGSQKDVNLSADALERLYEAAGQGIEITKETLHLYIQDSFQKDKSIETVIK TPKKSIIPRGKNQRQYIENIFNYEVNFGIGPAGTGKTYLAVAAAIDALLNERVDRIIL IRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDGLYEMLGIEKTEKLMAKGIVEIAPLAY MRGRTLNNSFIIVDESQNTTKEQMKMVLTRMGFGSYLVINGDLTQIDLPKNIDSGLSN AVKVLKDTDGIGFTRFLSRDVVRHPLVRKIIDAYEYFEEKVKTK" gene 318955..319404 /locus_tag="NT01SARS_1223" CDS 318955..319404 /locus_tag="NT01SARS_1223" /note="identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043" /codon_start=1 /transl_table=11 /product="putative metalloprotease" /protein_id="EJP71416.1" /translation="MSLTIINHKNHKIDNDLSLKLENAFNLIRKEENLGDCSVNLKIV DNEEMEDLNKKYRNKDASTNVLSFTNKDISKKITNELGDIAISYEYVIEESAALNKEY DDHIIHMLIHGIYHILGFDHENDNMAKTMEDKEIALLSKLKITNPYI" gene 319409..320263 /locus_tag="NT01SARS_1224" CDS 319409..320263 /locus_tag="NT01SARS_1224" /note="identified by match to protein family HMM PF00571; match to protein family HMM PF03471" /codon_start=1 /transl_table=11 /product="magnesium and cobalt efflux protein CorC" /protein_id="EJP71417.1" /translation="MNEKYNSEESKPPSSIFDKIKKYFRNPFFIKTQSVSEVTDFLKD AVDQKIIDKEAESIASKAIKLGDITVKEIMIPKVDMVTIQIDENTTDVITKIIESGHS RYPVLGSERDEVVGILLAKDILPKLFKGVSDFQLTDMLREANVVPESKKADSLLEEFK QDRRHLAVVIDEYGSISGLITIEDILEELVGEIEDEHDVEEEDIVEISKNKFYVDAKV ELEEFINFFQLEIDPLAVDAETLGGFFIAEFGMLPKNGEKLKVQDLTIKVTDTDNRRI KSFEIRKA" gene 320263..321723 /gene="lnt" /locus_tag="NT01SARS_1225" CDS 320263..321723 /gene="lnt" /locus_tag="NT01SARS_1225" /EC_number="2.3.1.-" /note="identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="EJP71418.1" /translation="MQLKHILYSFIAGFVGIFAFAPFSIKILIFLSYGYLVHVIINQS KHQFAQVFSWGLGHWGFGMSWIIVSVYYYGETSILLSSLIHVLLTIILTLVFTCPLLL LILLKKYINQESNSLKILFVASFFMISEISREYLLNGVPWLIPGNIYLDTIGQNIYPY LGASFASYVIYLLTAALVISGRNNKIPIANLVIVLFTLIPQNNDTVSEGDILVSIIQP SSDPFLKYKDNYYLDIESNLLSLIKNTSEDTDLIVIPEAELPYPINDMRFSKFIDRTN SANKILLGAWFFNDAKLFNTIYNPENKNIYKKQHLVPFGEYIPFFSSLRGLISFFDLP MSNVAFGPNDQKNIIVLDNVNVATPICFDVAFPETIRKMNKSSLLMINISNDTWFGSS IGPYHHLSITRVRAIENNRWIIRATNNGFSAIIDNKGTIVEILDQNVSNVLESKVKLV ENASIFNKFGYMFNYFFSFIIILLFIARALWKKLKN" gene 321702..322352 /locus_tag="NT01SARS_1226" CDS 321702..322352 /locus_tag="NT01SARS_1226" /note="identified by match to protein family HMM PF03734" /codon_start=1 /transl_table=11 /product="ErfK/YbiS/YcfS/YnhG" /protein_id="EJP71419.1" /translation="MEKIKKLVLLSTFLLFPEILNAFQDIINPDVTTNRWIIESNTKY LNKASARSFKGELEAEIVVDISEQRLYLVKNKKILKSYPISSSKYGEGSIQNSFKTPL GMHEIRTKIGHDAKENTIFVARANTNKSAKIIKDVIDTEDDHVTSRILWLDGLELGRN KGEGIDSYNRYIYIHGTHEEGLIGQKASHGCIRMFNNDVIDLFERVQEGTYVLIKA" gene complement(322392..324545) /locus_tag="NT01SARS_1227" CDS complement(322392..324545) /locus_tag="NT01SARS_1227" /EC_number="1.1.1.35" /EC_number="4.2.1.17" /EC_number="5.3.3.8" /note="identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase" /protein_id="EJP71420.1" /translation="MKGTVLYDVKDNVAVLTVDNPPVNPLSDGVRTGLYECVTKAEED DSIKGIVVTGNGRAFIAGADISEFGGNVEGISLNEVFNKLEHCSKPVVAAINGIALGG GLETALCCNYRIAANTAFVGLPEVNLGLLPGGGGTQRLPRLAGPSEALKMMLTGGHIP AKKALDMGIVDSISENVVEDSIKFAIEKAESSEQHPKVRDLNEKMIEARGNDKILLEA QAMAAKGRKGQFAPGQIIKCVEAAINLDDFDEGLKKEGELFLECLLHPQREAMIHIFF GERAASKISDVPKDTPVKEIKKAGIIGSGTMGGGIAMCFANAGIPVHIIDQDEENLKR GVSVIEKNYDFMVGKGRLTSEQKDAVFGLVTSSLEYEDISDCDIVIEAVYENLELKHE IFKTLDSVVKPEAILASNTSGLDIDSIAAVTKRPELVVGTHFFSPANIMRLLEVVRGE VTSDETLATVMAVGKKLKKAAVVSLNAPGFIGNRMLFGYTAQANMLLLEGALPHQIDQ ALESFGLNMGPFRMMDLVGLDLGWRARKLSGKESPLHAKIGDELCEQNRYGQKNGAGY YNYTEGSRAPNAAPENEELYERISQENGFTRREISDEEIVDRCILALINEGANILSEG VAQRAVDIDVVYINGYGFPIWRGGPMHHANAMGLDVVVEKLNKYKELTGNDVYKPSEL LVSLAENNLKMGDAPAKADRKEKLGFEMSSVANNF" gene complement(324629..324820) /locus_tag="NT01SARS_1228" CDS complement(324629..324820) /locus_tag="NT01SARS_1228" /codon_start=1 /transl_table=11 /product="Pre-mRNA-splicing factor Isy1" /protein_id="EJP71421.1" /translation="MIAEREDINRVIKKISSMLSLNLFNIKLPALLKRWRAEPSIIPE CQQKLIGERSADIYYYMYL" gene 324847..325371 /locus_tag="NT01SARS_1229" CDS 324847..325371 /locus_tag="NT01SARS_1229" /note="identified by match to protein family HMM PF00255" /codon_start=1 /transl_table=11 /product="glutathione peroxidase" /protein_id="EJP71422.1" /translation="MKKFFVIVSLFFSFNAFACNDLLDTEMRILDSSETLNLCEYENN VILVVNVASRCGYTYQYASLQKLYERYREDDFVILGVPSRDFMQEYSSEEDVAEFCST EYGVNFPMFATSKVRGKKASPLYKKLFNETGVSPKWNFNKYLISRDGSVVSTYGSSVK PDSVELISDIEKLL" gene complement(325373..326011) /gene="rpiA" /locus_tag="NT01SARS_1230" CDS complement(325373..326011) /gene="rpiA" /locus_tag="NT01SARS_1230" /EC_number="5.3.1.6" /note="identified by match to protein family HMM PF06026; match to protein family HMM TIGR00021" /codon_start=1 /transl_table=11 /product="ribose 5-phosphate isomerase A" /protein_id="EJP71423.1" /translation="MSAAKITVAKKAIGHIEKKLDRNMVLGIGTGSTVNFFIEELAKF KNLFKGAVSSSEASTKLLQDIGIEVFNLNDVNEVSYYIDGADEVSPENFLIKGGGGAH TREKIVAAASTSFICIVDSSKLVDQLGLFPLPIEVIPESRSMVARKIIELGGLPEYRS GFITDQGNQIIDVKNLIIKDPKELESYLNNIPGVVENGIFSFNKPDLVLTET" gene 326038..328320 /locus_tag="NT01SARS_1231" CDS 326038..328320 /locus_tag="NT01SARS_1231" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00291; match to protein family HMM PF00585; match to protein family HMM TIGR01124" /codon_start=1 /transl_table=11 /product="threonine ammonia-lyase" /protein_id="EJP71424.1" /translation="MLNKLRLKINKTGSFRYSKKYLKMIEEASVYDVAIDSPTTHAIN LSLKENNNIYLKREDLQPIFSFKNRGAYNKIINLSDKQKSLGIIAASAGNHAQGVALA CKKLKIKCNIVMPLTAPENKLNAVKRLGAKIIMHGENLGEALAHADKINKKHNYTFVH PFDDPFTIAGQGTVGKEILEDGIDYDAVFVPVGGGGLLAGISAWIRQNKKKIKIIGVE VDDSACLTEALLQIKSYLEKWMLQMEGXXXXXXXGSYRYSKKYLKMINDASVYDVSIN SPTTHAINLSLKENNNIYLKREDLQPIFSFKNRGAFNKIFNLSNDKKSNGIIAASAGN HAQGVALACKKLKIKCLIVMPVTAPENKLNAVKRLGAKIIMHGENLGEALAHADKINK KHNYTFVHPFDDPFTIAGQGTVGKEILEDGIDYDAVFVPVGGGGLLAGISAWIRQNKK KIKIIGVEVDDSACLTEALLQNKRVYLEKVGLFADGVAVSQVGKNNLDVIKECVDEVM TVNIDEVCAAVRDIFEDTRVLSEPSGAVALAGLKSYSRRMKNKNLLAVSSGANVNFQK LGFIVERSEIGENREKILSIKIPEEPGSFLKIAKVFGKISVTEFNYRKSNNKDAYVLV GIRTKSEDSFSRLKQKLKKLKYKFNDYTKNKISNDHLRHMVGGRVSSSGSTDINERIF NGEFPEKPGALVNFLEKFGTKWNISLFHYRNIGSAYGNILIGIEDNKKDKSILIKHLD KCGTIFKEESNNKAYLDFLK" assembly_gap 326774..326793 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(328321..330597) /locus_tag="NT01SARS_1232" CDS complement(328321..330597) /locus_tag="NT01SARS_1232" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71425.1" /translation="MIKKFFILFVSVNLIAESIVIDGNLDEPEWQTAFKITEFYESDP YTLRKTDDETEAYIFSNEDGIYVGFINYQDESTMLSNRTMRDEMSSLSEKNSINIDFD GDRTKAYIIAVALGDSLFDAIKIQSGDFKTDWDGDWIAKTKQFKTYWTSEFYLPWNVV LMNQSDANKRRINYSALRYKASEQSWYSSAGTMAMRADYFQELDSLEINNFTRSKLNF FPYFAFNKNTPQNFQESNIGAELFYNSGKGSQINLTVNPDFGQAESDDVIVNFSAQET FYKEKRAFFTENQSLFDISNYERYSIINTRRIGAAPSYNCSEELNEEDCINTRKNYSD IDFSMRYTQKNGQNNYGIFLAKESDEDFSKGREFIALRGKTKINSKTLGYMITNVEND FLGTKSTVNVFDYINVRSEKLTTYADILTTKKEGDSGKGLRLQYTYKPTQLTRNSGSI LYFDKEVRLNDFGYLKRNDWFHFGIGHNIKKVDFENNSPFQQIDTNYDFNYDADTDGN SNPIDFNQKNSITFKDTSKFNYDFRFKTSGKNTTITRKDPLYPFVKIKKNFSVTADFE EKNFKYWTYDWRISFDKSSKYDEWDSNGYQKRFFKIAGSLFPNENIKIRSEFRVKKEK EWLNWIDGNHLAAYDLNQRIFSLNLNWFKGTKHEIRLKSQFIALEAKNPVSLETNSNG VLFNSEKLVNPFSNGITSFQVRYRYEIAPLSNVYIVYTKGGNVYEEDDERSFSDIFRD PWENPENEIFSLKVRLKF" gene complement(330622..331212) /locus_tag="NT01SARS_1233" CDS complement(330622..331212) /locus_tag="NT01SARS_1233" /EC_number="6.3.3.2" /note="identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727" /codon_start=1 /transl_table=11 /product="5-formyltetrahydrofolate cyclo-ligase" /protein_id="EJP71426.1" /translation="MIASAFYMVKNNIRKSLLEQGLTLSEKFILSSNNQIQEKFLEYL STVEFKKILLYSPYKNEIKLDLVLKKLNEMQKEIFIPKVFPNNELKFNLLESCNQLIK NKYNILESQSNLFVKVKMINVLVVPFLGVDANGKRLGYGGGYYDRALGNILSENKKPL IIGLGYDHQILKENFGESHDLKYDKVFTETNIHNFS" gene complement(331207..331379) /locus_tag="NT01SARS_1234" ncRNA complement(331207..331379) /ncRNA_class="other" /locus_tag="NT01SARS_1234" /product="6S / SsrS RNA" /inference="nucleotide motif:RFAM:RF00013" /note="6S / SsrS RNA; Rfam score 42.65" gene complement(331416..331682) /locus_tag="NT01SARS_1235" CDS complement(331416..331682) /locus_tag="NT01SARS_1235" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71427.1" /translation="MSKVETISLRIFGRDLTIACPPKEKNNLIKAANLLNEELDGIND KNNALIIAGLTLANKLLSDGKKKNVSSDLNLKKMITKIDKALKN" gene complement(331675..331869) /locus_tag="NT01SARS_1236" CDS complement(331675..331869) /locus_tag="NT01SARS_1236" /codon_start=1 /transl_table=11 /product="putative plasmid recombination enzyme type 1" /protein_id="EJP71428.1" /translation="MSKDAGFTSKHLEDRVNKLLKRFEEQKGIINAYIKREREWKKDK VLHKKIVTQLEKEIKKINNE" gene 331935..333230 /locus_tag="NT01SARS_1237" CDS 331935..333230 /locus_tag="NT01SARS_1237" /note="identified by match to protein family HMM PF00557; match to protein family HMM PF05195" /codon_start=1 /transl_table=11 /product="Xaa-Pro aminopeptidase" /protein_id="EJP71429.1" /translation="MSKNIYKNRRDKLGALLPENSVLLLPGADLQYRNADSAFPFRQE SSFYYFSGFCEPSSLVAIVNSDKGLSSIAFVPPKDKIKEIWDGYRAGPIGAVEDYMFD KAFDNTQIDLMLPDILHGNEQVLYSIGKKKGFDQKVIEWTTAASSKDRHSKSINITDA SSLIGNIRLIKDDHEIDLIKRACDISAEAHIEAMKQVKDGDNEQFIESLYIHEFSKRG ARFPAYPPIVAGGENACVLHYVENNCELKENDLLLVDAGCEFNMYAADITRTYPVGGK FSEEQLEIYKIVLKAMNAAIDTVKEGNSIMMPQEVSEKVITEGLVEIGILDGDPDQLH KEGAYKEFYMHKIGHWLGLDVHDAGDYMEGNEFMKFKPGMITTIEPGIYISSSSNVED KWKGIGVRIEDDILVTKDGNENLTKKVPSDPNEIESLMS" gene 333235..334395 /locus_tag="NT01SARS_1238" CDS 333235..334395 /locus_tag="NT01SARS_1238" /note="identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988" /codon_start=1 /transl_table=11 /product="putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase" /protein_id="EJP71430.1" /translation="MDAIVTISGGGIIGNYISSRLNNLNIKCVVVEKNQEVFSSESNI RTLTLNPISKKLLDDIGIEVPSAAIKEISVFDAEGTGKIVFDASEINHDNLSYVVFFD DLLKALQESEHSKIIFDNEIVSINEDTNDEFCEVLLKSKDVIKTTFVAGCDGRNSNVA KITGQKSKRSDYNQTAITFTTISENIDEGRAFQIFSERGIFAAMPLPKNDHGATHTIV WSINNSKLKNQTSIEEYVSKNIHYFEKKLNTQYKICSDLISFKLSNHYFEDYISSSTV LIGDAAHSIHPLAGQGINLGFADADVFCEEIINSYNKTRKINKNITLKRYEIRRKKMN LLMLRSMDFFVELFKSQNLLLILLRNIGLSGVNKIKFLKTFFINHAAGNNKL" gene 334443..335435 /locus_tag="NT01SARS_1239" CDS 334443..335435 /locus_tag="NT01SARS_1239" /note="identified by match to protein family HMM PF01547" /codon_start=1 /transl_table=11 /product="iron deficiency-induced protein A" /protein_id="EJP71431.1" /translation="MKKISLLLSLFIIFSCAKDSSELTVYTSRQPQLIEPIVEQFTNE TGIKVNLLSGNAQELMERIDIEGEDSPADIFMTVDAGVLWQAAERDILAKIDSEILNE NIPAHLRDSKNEWFGLSKRARTIVFSSDQFKDNDFSTYEDLADPKWKGKLCLRTSKKV YNRSLIASMIDAYGFDKSKEVVSGWISNLATEVFSNDTNALKAVSSGQCGVTIVNTYY LARLLDDPEYNNLSLFWANQSDRGVHVNISGAGVVKTSKNKKNAVLFLEYLSSNKAQD FYASANKEYPVLIGAKIDESIENWGSFSEHTINVSKLGSLQKEAVFLAQEVGYK" gene complement(335445..335681) /gene="rpmB" /locus_tag="NT01SARS_1240" CDS complement(335445..335681) /gene="rpmB" /locus_tag="NT01SARS_1240" /note="identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009" /codon_start=1 /transl_table=11 /product="ribosomal protein L28" /protein_id="EJP71432.1" /translation="MSKKCQVTGKIPQTGNNVSHANNRTKRKFFPNLHTHKFWVESEN RFVNLKVSAKGMRIIDKKGISKVLKEIRARGEKV" gene 335738..336232 /locus_tag="NT01SARS_1241" CDS 335738..336232 /locus_tag="NT01SARS_1241" /note="identified by match to protein family HMM PF00300" /codon_start=1 /transl_table=11 /product="putative phosphohistidine phosphatase, SixA" /protein_id="EJP71433.1" /translation="MKEIFVLRHAKSSWDNVNLSDHDRPLADRGIKDAAKLCVFVKNK GYMLDKVLCSTAKRAKETFDLTADGFNFEIDKTTYTDKLYFGDITDIIKDLRELDESL NNILIVGHNPTLHHLVELLANEQIDRFTTCNLAIISHAGKWISLNSHKCSLKSLIRPK DLAN" gene 336229..336684 /locus_tag="NT01SARS_1242" CDS 336229..336684 /locus_tag="NT01SARS_1242" /note="identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576" /codon_start=1 /transl_table=11 /product="dUTP diphosphatase" /protein_id="EJP71434.1" /translation="MKKIKLKILNPLIGNKIPVPKYETKGSAGLDLRACIKEKLILKP GKTVMIPMGFAMHLEDESLAALVVPRSGLGSKHGIVLGNLVGLIDSDYQGELMVPAWN RSEQEFEINSGDRIAQMIIVPIVQADFEIVEDFEKSERGTKGFGSSGID" gene complement(336687..336932) /gene="rpmE" /locus_tag="NT01SARS_1243" CDS complement(336687..336932) /gene="rpmE" /locus_tag="NT01SARS_1243" /note="identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105" /codon_start=1 /transl_table=11 /product="ribosomal protein L31" /protein_id="EJP71435.1" /translation="MKKDIHPEYREVLFHDISVDEYFLLRSTLKTDKTKEWEGKEYPY YTVEVSSASHPFYTGKQKIIDTGGRVQKFEERFGKKK" gene 336991..338970 /gene="priA" /locus_tag="NT01SARS_1245" CDS 336991..338970 /gene="priA" /locus_tag="NT01SARS_1245" /EC_number="3.6.1.-" /note="identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595" /codon_start=1 /transl_table=11 /product="primosomal protein N" /protein_id="EJP71436.1" /translation="MNFFYYDIAVGLPLRQCFTYKSKDIIKKGERVVVPFGNKSIIGI VVKKVSKPKSLKGLKEIIEITDDHIAFDKSEFKTILWASDYYHHPIGEVFFSFLPTLL RKKNDKTVKATGEIAKYELNEKDKNFKLTKEQSTNLDKLNKINRFDPSLIYGVTGSGK TEIYLQLAEKLIQKNKSVLVLVPEINLIPQLEKRFKNRFSGDIGVYHSRQTSNQRLKV WLRSKFGEIKIVIGTRSSVLIPLKDLGAIIVDEEHDQSYKQADGFKFSGRDIAIKRSQ IEDIPIFLGSATPSLQTLKLVKEKKYKKYDLLRRVDGKKPPKLIPLDISESSMLGGIA AQTMDIINSVIKRGEQVLIFINRRGFAPLYECDNCGWVAKCSSCESNLVFHKSKNRLI CHRCESVYRVNDSCPDCSSNEINILGTGTERVEEILKSTFKKVPIIRMDYDSTRLKGS IDAIYEEAEKSKQAILVGTQMLSKGHDFPKVTLCVILNADGGLLSPDINSVEKISQQL IQVSGRAGRNNNLAKVIIQTRYPNDENLKKIKTGDYQIVAERCLKTNKALDIPPYSNI SILRAISPNPQIGIKFLDKAHKILKNKKNVDVIGPFPSIPFKVKGNTRNHLVIKSNTK TYLNRVLKFLTKEIENWPETKKVKWSYDIDPYDMS" gene complement(338965..340227) /locus_tag="NT01SARS_1244" CDS complement(338965..340227) /locus_tag="NT01SARS_1244" /note="identified by match to protein family HMM PF01476; match to protein family HMM PF01520" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="EJP71437.1" /translation="MNKFISFFIFFSLFIDSNEISFNEIKNLDKESIEVSFLLEKVSL IKSYSLKDPSRIVLDVYETDLKEEIIKKYNYPIKQVRAFSEENVTRIVIDLYEYINWA KPVQSIKDEAVMLKVEIKKNKKLEESLRDIVVAIDAGHGGKYPGAVGTNNILEKDVTL LIAKELERSLKNTAGFHPVMVRNNDETVSLNDRYQRARRLGADIFVSIHADGFRLSSV KGASVYIWSEKASSSVAENLSDRKRQQIQADIKNLKPYDFNEDSSRELYPKIYKEKIK QSQALGTKILDQLKRDPYTKIHKKNVEFADFRVLKSIDIPSVLVESGFLTNPEDAERL KTKPGRRMIARSIFLGINNYFIENPIEGTLINNNTDYLEYTIQKGDVLSEIAIRFGVT VESIKVTNNIGDNPIYPGQIIYVYLRNL" gene complement(340220..340681) /locus_tag="NT01SARS_1246" CDS complement(340220..340681) /locus_tag="NT01SARS_1246" /note="identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150" /codon_start=1 /transl_table=11 /product="ATPase" /protein_id="EJP71438.1" /translation="MNTIFLKNDSDTSKLGSLIASEIAKIDQESIEIHLEGDLGAGKT FLTKSIIINSGWNGHVKSPTYTLCEEYDLGELIFLHIDLYRTIESEDIQIFDLDRKTH LKKIIIIEWPQKLTSKRDYDLKINLEHSDKGRKVTILQHDKIFLNLVNNYE" gene complement(340678..341505) /locus_tag="NT01SARS_1247" CDS complement(340678..341505) /locus_tag="NT01SARS_1247" /note="identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196" /codon_start=1 /transl_table=11 /product="YjeF C-terminal domain protein" /protein_id="EJP71439.1" /translation="MTEEFNFDSLKIKLQKRSSNSHKGDFGRVMVVGGSEGMGGAAIL SSEASLFCGSGLVHLNTHPKNVEASLIRNPEIMAQGVDNLFSIQSNISVLLCGPGLKE DNWSQSVFNTVLKDDNKNILLYDAGALRLLSRINEIDSCKETILTPHPGEAAELLNIS VDEVQKNRVNAAELISEKYKSTVVLKGKHTIVCSMENKSVFICSDGGPELSTGGTGDV LAGVISSLVAQNLDIVDACLLSVAAHAKAGELFKNDVGEIGLNASSLIPIIRDLINK" gene complement(341511..342881) /locus_tag="NT01SARS_1248" CDS complement(341511..342881) /locus_tag="NT01SARS_1248" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71440.1" /translation="MNYFYFFLFIFLSILIFIRPIIWIIANWVLKSKRLNKTGLVAIV LGCVCIFFAVQDEYWFERVWRITTLCLGIIFILRGIAVIFLFDYVKKFTNYYLKNYYK ISIPISFLMIGIAFIIISNDYIGPQKDISECISDRNIEIICGFKNPEDIVITPDNEFL LMSEFGGIEPYEEQKPGYFALLNLQTKEKIIPNILIEENIWGNSSCKRNKTKKYGPHG IDLVKREDGAYQLGVVNHFPDETIEMFEIFKESGSWNMVWRGCIEVPNEFYFNDISLK TNGGFYASHMYKRDITLNEWLFISLIKKNTGYLVEWSEDGFNKINGSEGSGSNGIALD RKKNIIYINYNQGDSITKFDLNTNTKVDKKFIEAPDNPYIDGDYVWVTSLDFQPNDFG KCEFDISCSLPFSVYKLDKNNLETINKYSFSKSVFGLPTVAVPFNNEIYLGSFHSDRI GIVKTN" gene complement(342888..343778) /locus_tag="NT01SARS_1249" CDS complement(342888..343778) /locus_tag="NT01SARS_1249" /note="identified by match to protein family HMM PF00561" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase family protein" /protein_id="EJP71441.1" /translation="MTITDNLISDISNAPEWFLKSIANKGVDVLINDPNGDISYSKWK SNNQSKNLLILIHGTGAHKKWWDPIAPQFIDDTNVIAVDLPGMGDSDFREKYSIKDFG SCIFSIIEKEKKDAQIENIYIVGHSLGGQVAAYLASEYKDLVTSLIMIDTFIRPPDYD PSEHEGGPLRKIKYYPDKKTILQRFRLMPTQECKNDWFLRYIAEYSVREVEDGWRWKF DDLMFNSLERLFGYKFSFKCPALFIYGANSLLMSGNILSNIKKMYSDIMEFEKVDEAA HHVPLDKPLEIVDIIKKRLF" gene 343811..344602 /locus_tag="NT01SARS_1250" CDS 343811..344602 /locus_tag="NT01SARS_1250" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="EJP71442.1" /translation="MNNNLIPAATVLVLRDSDDGMEVLMVKRSKRPPFENLYVFPGGK IDKEDHFDDYQKYCNVLNNKIASEKLGLDSGGLSYWIACIRECFEEIGILLAKKQSGE FLDLDGADKERFDSYRDKLIKNEINLLDICSKEDLMLSTNNIAPLSHWITPNIEAKRF DTRFFIAYLPKNQTVQHDGQELTQSLWINPAAAIEKAFSGELQMIMPTIKNLQTCLDF SSAKDMLNHQKKLNNDDIPPILPKFFKENGNWVGLLPGDEGYEDH" gene 344602..345402 /locus_tag="NT01SARS_1252" CDS 344602..345402 /locus_tag="NT01SARS_1252" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00753" /codon_start=1 /transl_table=11 /product="zinc-dependent hydrolase" /protein_id="EJP71443.1" /translation="MNELIEKITAPNGGVFTGNGTNTYLLGKEDLTLIDPGPKNDEHI DEIIQFGDGKIKRILVTHTHKDHSPAALPISKILDVPMHGRLVDGESEWEDETFVPDK VLNHGDLIETNEYSIEVVHTPGHASNHLCFYLKEQKCLLTGDHIMDGSTVVIAPPDGK MRDYLESLELLKNYDVEYFAPGHGNFMDNPEKTIDSITRHRLAREAKVLRNLEKHGSQ KIDDLLKHVYSDVPEVLFPIAKMSLLAHLIKLIEDKKVNCEEDIYSSS" gene complement(345387..345788) /locus_tag="NT01SARS_1251" CDS complement(345387..345788) /locus_tag="NT01SARS_1251" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71444.1" /translation="MKKILLTITLSSLASCKVVPKDDGFQNIIPNDPAVGRASITCLQ RPMNHQPIPAQLGKRDQRTIEVTDQNDCMESEMRKVALKNVDSKKNIKLDINLNKKSE NDPIVIKSDKSDDFDLEKLEKLIKKKGQDEE" gene complement(345785..347707) /gene="acsA" /locus_tag="NT01SARS_1253" CDS complement(345785..347707) /gene="acsA" /locus_tag="NT01SARS_1253" /EC_number="6.2.1.1" /note="identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188" /codon_start=1 /transl_table=11 /product="acetate--CoA ligase" /protein_id="EJP71445.1" /translation="MSEKIINPISKNPHIKDINEYLDLYEKSIKDPESFFNNLAMDNL SWIKEFDSPHNNKFADAKWFEGGKINVSHNCIDRHLDKNSEKVALIWQGDNPSESKEF TFQQLHTEVCIFSNVLKSLNVKKGSRVCIYMPMIPEAAFAMLACTRIGAIHSVVFGGF SPESLKDRILDADCEVVITADEGIRGGKKIPLKKNVDEALLKCPNVKTALVIKRTGGE INWDSSRDQWYEDLRDKVNADCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTAGYLLG AHVSFKYLFGINPDDIYWCTADVGWITGHTYIIYGPLSNGTTSIMFEGIPTYPDSSRC WQICDKYEVNVFYTAPTAIRALMAKGNEPVLKTKRNSLRVLGTVGEPINPEAWQWYYE IVGNSSCDIIDTWWQTETGSVLISPIAGITQVKPGSATLPFFGVKPALYDDKGKVLEG ENSGNLVIEKSWPSQIRTVYGDHKRMISTYFETYPNIYFTGDGAKRDKDGYFWITGRV DDVLNVSGHRLGTAEIESALVLHEKVAEAAVVGIEHPIKGQGIYAYVTLMVDEDFSED LKNELINFVSKEIGPIAKPDLLQNAPSLPKTRSGKIMRRILRKIAEGDFDNLGDTSTL AEPAVVNDLMLNKQSL" gene complement(347713..348378) /locus_tag="NT01SARS_1254" CDS complement(347713..348378) /locus_tag="NT01SARS_1254" /note="identified by match to protein family HMM PF01712" /codon_start=1 /transl_table=11 /product="DNA polymerase III, epsilon subunit" /protein_id="EJP71446.1" /translation="MKAALNELPLPKYIAIEGPIGVGKTTLANKIAKTFNYDAFLEQP AENPFLKNFYRNPEQSALATQLFFLFQRMQQIQDLKQRSLFENVRVADFLIEKDRLFA EVTLSNEELGLYNKVYEHITIDAPTPDLVIYLQAPIEVLKERITKRGNINEQYLTLDY LEKLNDAYSRFFLDYKSAPLLIINASDIDLESNESDYENLITMIMSDPKGINFVNPQP SII" gene complement(348400..349632) /locus_tag="NT01SARS_1255" CDS complement(348400..349632) /locus_tag="NT01SARS_1255" /note="identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942" /codon_start=1 /transl_table=11 /product="poly(A) polymerase" /protein_id="EJP71447.1" /translation="MIDNKKINNFALSIVKDLQDNGFQAYLVGGCVRDLLCKIIPKDF DIATNATPEQIRKIFKASRIIGRRFKLVHVFNRSELIEVATFRSGENKENDGNLVTDR TGKILRDNIWGTLEQDTFRRDFTVNALYYCPVSKKIEDHNSGIKHIRDKKIVSIGDPI KRFSEDPVRSLRAIRFSNKLQFKIDSKIKDAIYKQGHLLSHISNARLFDEFCKIFLNG IAEKNFKKLESYGLNQYLILTNPNDTIFSSELIKEALRNTDKRFGENKSITPGFLIAA MLWPELIKRASKNDEINLRKFFRSMDQVLKNQQNITAIPRKFHTYIKDIWILQLKLHS RIGKQPYKTLKHPRFRAAYDFLLIREKASKCKPDLGSWWTKFQKNDPSSQKSLISNLR ELTEEQSFKKFGFPEELI" gene complement(349657..350211) /locus_tag="NT01SARS_1256" CDS complement(349657..350211) /locus_tag="NT01SARS_1256" /note="identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420" /codon_start=1 /transl_table=11 /product="DnaK suppressor-like protein" /protein_id="EJP71448.1" /translation="MPAKKATKKNTKTTVKKSVKKAPAKKVVKKKPVAKKTKQNKVVA KIANNKSKIAPYKPKKNEKYMSAAMKKHFVAVLLLWKEHLKEEMQKTFDHLKTKGETY ADPIDRASQEEEFAFELRTRDRERKLINKIAISIEQIKQDEYGWCESCGDEIGIKRLE ARPTATHCIHCKTLDEIKEKQLSG" gene complement(350264..351265) /locus_tag="NT01SARS_1257" CDS complement(350264..351265) /locus_tag="NT01SARS_1257" /note="identified by match to protein family HMM PF00294" /codon_start=1 /transl_table=11 /product="cell division protein FtsA" /protein_id="EJP71449.1" /translation="MKYDISAIGNALVDTQFKVSHDFLDQVGLEADSMTLASPAEHAP IIEKLEEIGAESVSDCGGSATNSLVAAAYYGSKCHHVCRVADDEDGKKYLESLKKANV EHIGVSKENSDLPTGKCLIFVTPDAKRTMSSMLGISAFLGSKDIDYDAVENSKIFYIE GYMVTSDENFNAVTSVLKNLNNEDTLKAVSLSDAGIVNGFKDKFLEIESYGIDMIFCN DDEAVAFAGTNDLDQAIEYFKSKPYMTAITKGSEGSVVISNGKKIFSPAVEIDPVDTN GAGDMYAGSFMHAYLNGYDIETCAEFSNYASSKIVETFGPRLTPEGYTEVINKLKKS" gene complement(351268..352557) /gene="hemL" /locus_tag="NT01SARS_1258" CDS complement(351268..352557) /gene="hemL" /locus_tag="NT01SARS_1258" /EC_number="5.4.3.8" /note="identified by match to protein family HMM PF00202; match to protein family HMM TIGR00713" /codon_start=1 /transl_table=11 /product="glutamate-1-semialdehyde-2,1-aminomutase" /protein_id="EJP71450.1" /translation="MYKIKKSLKLFEEAKLHMPGGVNSPVRAFKNIDGNPIFFSKAKG PYVFDADDNKYIDYIGSWGPMILGHSNPNIIRAISKQLQLGTSYGAPTNLESKTAEII KDCVPSIEKIRMVNSGTEATMSAIRLARGFTKRNKIIKFDGCYHGHVDSLLIKAGSGV STFGLPDSPGIPKQLAKQTISCEFNNKDAFLETFENVKNDLAAVIIEPIAGNMGFIPG TKSFLNLLRKKTKENNSILIFDEVMTGFRVSLGGAQEIYKIKPDITTLGKVIGGGLPV GAFGGKKEIMDYLAPNGPVYQAGTLSGNPLAMAAGYALIKLLAKENPYKSLEANAKKL LTEMHREFERKKIPFSSNQIGGMFGFFFSKKLPKNFNDVVNSSDEHFKKFLNASIRNG VYFAPSKFEAGFISTKHTKKEISNTIKIVKNILNEEI" gene complement(352560..353063) /locus_tag="NT01SARS_1259" CDS complement(352560..353063) /locus_tag="NT01SARS_1259" /codon_start=1 /transl_table=11 /product="protoporphyrinogen oxidase" /protein_id="EJP71451.1" /translation="MQKTIIVYSSVDGHTKEICQKIASQLEHQVDIVSVDDNPMIEDY DRIIIGASIRYGKYRESLFDFIDKNKNTIDTKKNAFFSVNVVARKKEKNKPETNPYVS KFLKNTNWIPKKIGVFAGKIDYPKYKLLDKYAIKFIMRITKGPTDTSKTYEFTDWDMV IEFARNI" gene 353151..353645 /locus_tag="NT01SARS_1260" CDS 353151..353645 /locus_tag="NT01SARS_1260" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71452.1" /translation="MKKYFLAIFIFFNVNIISEVKIEDCASIESDAKRLACYDYLVTG MSKSIDEIDVTTSGDSEERISSSAEKNSNFGLSRRQINESRNSNSRNALNASIEAISK TFGGKTRFKLSNNQLWETQSVVSSKLGSFKEKSDIRIEEASMGGFWMINKSSKVRIKV KRIS" gene 353647..353991 /locus_tag="NT01SARS_1262" CDS 353647..353991 /locus_tag="NT01SARS_1262" /note="identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster insertion protein ErpA" /protein_id="EJP71453.1" /translation="MSENVTRSLVLTDSAMTRILSVMDNNEDVGSKFRVYVTGGGCSG FQYGFKFDSETAFDDDVIEFENFSVLLDSMSYPYLYGSTLDFVEDLSGSKFVIKNPNA KTTCGCGESFTI" gene complement(353981..355003) /gene="anmK" /locus_tag="NT01SARS_1261" CDS complement(353981..355003) /gene="anmK" /locus_tag="NT01SARS_1261" /EC_number="2.7.1.-" /note="identified by match to protein family HMM PF03702" /codon_start=1 /transl_table=11 /product="anhydro-N-acetylmuramic acid kinase" /protein_id="EJP71454.1" /translation="MHNFFIGIMSGTSADSLDGCIVSFENEFKLIETESVDFGKNYKK VYEECIKSGYKVISDSNKLLQIEKILDEKSIELVEKLINKSGIEKKKISSIALSGQTV FHTNKRSYQIGNAQEVANASSINVCSDFRNFNIKQGGMGAPLIPAFHKYLYAENNTNK VIFNIGGIANGTYLKGEEISLASDVGPGNCLIDFYASKYYGFPFDNRGEIANQGAINE DLLIKLNESVKNMSYPRADDKNDYYNLVNDSISDVAPENIMRTVTEFTALKIEEFYKY CDSPDQVIFHGGGTKNIYLMKIIQSKIDTNVRTTDDEISSKFVEAAAFAYLAYKNQGI IFKPKL" gene complement(354996..356240) /locus_tag="NT01SARS_1263" CDS complement(354996..356240) /locus_tag="NT01SARS_1263" /note="identified by match to protein family HMM PF01551" /codon_start=1 /transl_table=11 /product="peptidase M23B" /protein_id="EJP71455.1" /translation="MIGFKKVPTKLVLSAFFISIFFILLLYTDTVLNKPLPEEEIKIT KNFDDPLPIIKNKLMHQVRKGESLSVIFEEKKVPLNTAYKIFNADKNNVLASINPDDI MEFNYLGDELSSIEIKKDKTNSIVIQIEEKISIAKLKKEIQLIQSYGSGSISTSFYKD ALGEGIPDSVIMDFAYIFGWDVDFIFDVRKDDKFTVIYETEYSGGEKISSGDIIFAEF INNNERYVAQRFYDKYQGKQYFNEKGENVKKAFLRAPLDFAYISSHFNPNRMHPILHK IKAHNGVDYAAKRNTPVKASGDGVVSFVGNKSGYGRTVEIKHGGNIKTLYAHLEKFNK KTKVGAKVKQGEIIAYVGDSGRATGTHLHFEFWQGTKRTDPVKVQLPSAQPISKEELD KFLSELGISLQKLAEYNQTDNA" gene complement(356237..359278) /gene="putA" /locus_tag="NT01SARS_1264" CDS complement(356237..359278) /gene="putA" /locus_tag="NT01SARS_1264" /EC_number="1.5.1.12" /EC_number="1.5.99.8" /note="identified by match to protein family HMM PF00171; match to protein family HMM PF01619; match to protein family HMM TIGR01238" /codon_start=1 /transl_table=11 /product="proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase" /protein_id="EJP71456.1" /translation="MLDIKDKFLSEKELVTEMLDKSKFLGEKSINNNASEIIQLCRKN KSDRTMLDAFLNEYGLDNQEGVALMCLAESVLRIPDKKTRDLIISEKLSAGSWIDHLN KADSIFVNASTWGLLLAGKVVNTPSEWSDDPYNFLSGLISKSGEMPIRNAVLAAMQIL SQEFVIGKDFRDIEKLSNLENESYSFDMLGEAARTMRQADNYFNAYMNAIDEVGKLNL IKNLNNGVSIKISALHPRYEMRKFKDLESELIPRLIELVHYAHSKDVEITIDAEEQDR LTLSLNIIEKLALDKVIKNWTGFGIALQAYGKRSINVIHWINKILDKREKMHLRLVKG AYWDYEIKHAQVFGYEDYPVYSKKSLTDISFLLCAKEILKNEKIYAKFATHNAHTISS VHQLGQGKDYEFQRLYGMGELLYQSAEKVLNLEKKPSVYAPIGSYKDLLPYLVRRLLE NGANSSFINRLLDPETDANWLAENPAIRIEKEKIDIPLPKNIFTERKNSSGFDLSENS NLENLEKSISAHKKNKINAESIYVNRDEKEKVGQKVYSIANNEEIGTAIFDDPTNVKS ALENFASEKWSKYSVQERSQILIKISDDIEKDPSELIFYLLNEAGKTIQNAIDEIREA IDFLRYYSRQIIEIHGKKSLQGPTGEINKISYSPKGNYLCISPWNFPVAILIGQISAA LACGNNVVVKPSENTSILGYLIVKKFHENGVPIETLQLILGDGMYGDVLTKVNTIHGV AFTGSLPTAKKIQTNLIQHHKEIVPLIAETGGINAMIVDSSALLEQVTDDVVRSAFDS AGQRCSALRVLCIQEEIYDELIEMIKGNMEIQEIGDPNNFSTDIGPIINKHALQKLND YIKGCKDQGMEVHNCNNSLKETHMSPTIIEIDNISAIQEEQFGPILHVMKYKFDDMNS VINQINESGYGLTMGIHTRIESRADFIGEKSNVGNIYINRDMVGAVVGSQPFGGIGLS GSGFKAGGPNYLLQFLNEKVISKNSVAFGGNTELLNLQEDL" gene 359357..360544 /gene="tyrS" /locus_tag="NT01SARS_1265" CDS 359357..360544 /gene="tyrS" /locus_tag="NT01SARS_1265" /EC_number="6.1.1.1" /note="identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234" /codon_start=1 /transl_table=11 /product="tyrosine--tRNA ligase" /protein_id="EJP71457.1" /translation="MKEALKLINRGTDEILTESDLKKKLDSGKQLIIKAGFDPTAPDL HLGHTVLLNKLRHFQDLGHRVVFLIGDFTGRIGDPSGTNKTRPTLDAKDLEENAKTYE KQVFKILKKDLTDVRFNSEWCEKLGADGLIRLAAKYNVARMLERDDFSKRFSENKSIA IHEFLYPLVQGYDSVALKADVELGGTDQKFNLLVGRELQRDYDQEPQVVITVPILEGL DGVKKMSKSLNNYVAIDEEPDEMFGKIMSISDDLMWRWFELLSFMSEEEINSLKKEMQ DGKNPRDIKFILAEEIVDRFHKDGDGQKCKESFLNRFQKGQIPENVDSVKVNIDGESI LLVNLLKETNMIASVSEGNRLIKQGGIKVNSEKVNDPKFEISVNSENLYQVGKRRFLK IKI" gene 360545..360997 /locus_tag="NT01SARS_1267" CDS 360545..360997 /locus_tag="NT01SARS_1267" /note="identified by match to protein family HMM PF00254" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase, FKBP-type FkpA" /protein_id="EJP71458.1" /translation="MKYLISAISLIMLSACVQDSPNIKQIENMQFFIDNKTDINVIEV EEGLQYLVMQSGDPEGKNPKLDQVITAHFHGTLTNGNIFWSSLDTEPLKIELSKLIIG CQKIISMMKKGDKWKVFIDPTMAYGEEGRPGIPSNSILVFEIELLAIN" gene complement(360994..361893) /locus_tag="NT01SARS_1266" CDS complement(360994..361893) /locus_tag="NT01SARS_1266" /note="identified by match to protein family HMM PF00487" /codon_start=1 /transl_table=11 /product="fatty acid desaturase family protein" /protein_id="EJP71459.1" /translation="MGMNLNSNVSEEFSFEKEKAVARKYAQRFQWEMILIGIGQACVW LSLWPLVMNEIIPLWSGFIIASFCACMSYLPSHEAQHGNYSRGNPKKKWIDRFVGSFT LITLIYPYEILRVTHMKHHAYTNHEDKDPDFITSNANSVKEVILCSLDGTSTDYAKYK DIYADDAAFQKAFDKGVNVFLAYRLILMILVLLFPLQTLLLWWLPAKIGVLYTTLFFS YYPHIGTEVGRYKNTRFWQHWMPRYINHSMQLHFVHHLHPNIGHYDEPKAIEELKPFL IARGVPGAEDIPDRITYNPLIKI" gene 361918..362052 /locus_tag="NT01SARS_1268" CDS 361918..362052 /locus_tag="NT01SARS_1268" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71460.1" /translation="MTPTTKPAKKQIAVKYGAPLRIFIFWTIAFRTLPIKIRPNHTLL " gene complement(362114..362192) /locus_tag="NT01SARS_1269" tRNA complement(362114..362192) /locus_tag="NT01SARS_1269" /product="tRNA-Ile" gene complement(362242..362916) /locus_tag="NT01SARS_1270" CDS complement(362242..362916) /locus_tag="NT01SARS_1270" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71461.1" /translation="MNQFKAAWQFTFENWKYFLMLALPLIAIESTVGYLLIPLGDMTQ PEDFMEFFQSNSIVIGLVSITGIILQMAFIGGLYLSYMAIDSEKEINPIGALQAGITK FFPLFGTFIIVTIVSAFGYLLLILPGIYITARLALFPFYIMLEDKKVFESISSSWENT DEYGSKLFVFTLIFIVLTLLIALVVTNLVSQGIVQTILLALSEYILVIPLGYIYYTLY KSLKVN" gene 362945..365047 /locus_tag="NT01SARS_1271" CDS 362945..365047 /locus_tag="NT01SARS_1271" /note="identified by match to protein family HMM PF00326; match to protein family HMM PF02897" /codon_start=1 /transl_table=11 /product="prolyl endopeptidase" /protein_id="EJP71462.1" /translation="MYKNTLYLLLLISLISCSSSGEDINYPESKKISFKENLHGYEIT DDYRWLEDFTSDESIDWITRQNEFTKKYIEKNKYKKDLENYLNQIWESESISIPYKVE DKTFFYFNDGSFQQSKLMIQDCEACEPKVLIDPNEFSEDGTVSLGGTSISNDASLIAY SISDGGSDWRTWKVMNIETGEVLDDELKWAKFSGASWENDDSGFFYRRYEEPDGELLK ELNESPKLMFHKIGTNQSEDELIYENPDNPRWGFGITVIKDSEMKLLSISEGTDDRNK LYLQMSKNSKFIPVIDELIGTYSFIDSKDNILWFYTTEGAPNGKIVNLEIKNGSFVWN EVIAESKNAIRSVNIINDSFVINYLEDTFSQISVFNLSGEFISKLSLPKQGTISGFSG GIEDTTSFFAVTNYVTPREIYKIDLTDLSFELFWKEELVGYDSSDYVSRLEFYPSKDG TQIPIHISHKKDLEIDENTPLLIYGYGGFNISILPNFSKSQTAWKNQNGVYAVANLRG GAEYGDAWHEAGMLLNKQNVFDDFAYAAKFLHSKKIGSPSTTAIDGRSNGGLLVAATM LQNPDLYKIAIPQVGVLDMLRFNKFTIGWAWESDYGSSDIKNEFENLLAYSPLHNIKS DVCYPTTLITTASRDDRVVPSHSFKFAAKLQELQSCNNPILIRVEDRAGHGAGTPKDK RINQISEIYGYALNVISS" misc_binding 365139..365236 /inference="nucleotide motif:RFAM:RF00059" /note="TPP riboswitch (THI element); Rfam score 60.59" /bound_moiety="thiamine/thiamin pyrophosphate" gene 365226..367322 /locus_tag="NT01SARS_1273" CDS 365226..367322 /locus_tag="NT01SARS_1273" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="EJP71463.1" /translation="MYIRKKILFLLPLIFSLLVLSSDIEEIIVKGEYREKSLGEEDSS IVIIQSEQIKSQAIKHFQQLSHLVPNLNYAASDSRARYFQIRGIGERSGYQGTPNSSV GFLIDDIDYSGQGGIATLFDVDQVEVFRGPQGSRSGANALAGLIYIKTKDPTEKFEGT SELTLGDYGTQNIGIAFGGPMQNKKLKYRLVLRTDYADGFRKNTYLNKSDTSKKDELT LRYKLNWELNETTNLDFLVSKVDMDDPADIWTIDGSLNTLSDRPGMDSQNTNSYGIKI TKDFSNFTVQSLTSATKTDVIFSYDADWGNADSHFPYVYDYFSETLRKRDTFSQEIRF LSKNTEFSFENPYEWIFGFEFSDLDESNLTKDDGIYGDPNDPYSPYVSESEILRDYQA ENFSVFGNIDYFLNRYYKIAFGLRWENWDSKYKDSNNESFSPSNNMNGGKISLVKNRN NSNTFFSIARGYKQGGFNLGLDATDNSIKQSLIYDPEFLTNYEIGISSNTENSGFNYS VVIFFSKREDQQVLISRQVDPSDPNTFSYLTENAAEGENYGLEVSSKFFINDQLSLFA NLGFLKTKIKNWESRPDLQNRSQAHAPEHTYSIGTNIDLKNNFYFKLNLNGKSEFFYS DSHNNKSKSYQLLNLTFGRSKGRFTSELWMRNVFDKYYSTRGFYFGNEAPDFIDTLYR RQGDPKNIGLSLRYDF" gene 367329..367901 /locus_tag="NT01SARS_1274" CDS 367329..367901 /locus_tag="NT01SARS_1274" /note="identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528" /codon_start=1 /transl_table=11 /product="nicotinamide mononucleotide transporter PnuC" /protein_id="EJP71464.1" /translation="MVNLILECVAVLMAILYLVLAAKEDVKCWYAALISSLIYIYIMY QADLFMESILQVFYVLMAIYGWLQWKNIINTNIVLNIKSWKKSNHFFAITIVLILSFI SGATLEKYTQAALPFLDAFTTWGAIITTYMVAKKILENWIYWFVIDSISIYLYISREL YLTALLFFIYLIIIIFGYRSWKNKLAIIDD" gene 367894..368715 /locus_tag="NT01SARS_1275" CDS 367894..368715 /locus_tag="NT01SARS_1275" /note="identified by match to protein family HMM PF01633; match to protein family HMM PF01636; match to protein family HMM PF02958" /codon_start=1 /transl_table=11 /product="phosphotransferase enzyme family protein" /protein_id="EJP71465.1" /translation="MIDITSDLKELNISYDKINVVRQGENSDTFLITTSKKKLIAKKF KNLNFKTITNTYLNKKILNQLVDKKLFPKVVYQSEEKDFLIYEYVESIKSNKDKLFYK NLGMKIREIHEIKPCKNNLTFEQQLNFYKMSLGKVNKEKVYTRIEDLLNDINIKKSKL VFSHNDLNANNILFNKDICIIDYEYSSLNNKFCDLSKVIFEFQMTEEEIESLLKGYRI NFDDVTKKKIILWQRFNLYLDYIWSIIISSNENQLTKENIESFYLNKYIDFDLKN" gene complement(368787..369284) /locus_tag="NT01SARS_1276" CDS complement(368787..369284) /locus_tag="NT01SARS_1276" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71466.1" /translation="MSTNKQKYLVLRGKNKDIYFIQKRLSKEQAAIYGKEFIKKSLET TDLNEAIQKRDEILRSLEYKSFEQEKTASNDVNIVAKNDFYSTMEENMSTSIENEQNF NLNSSHNVPIDQKNDNHDANNEKYSIFSLKLPKIPEKEDLIVKIDKIIPIAIVIISLF IALIA" gene 369499..370695 /locus_tag="NT01SARS_1277" CDS 369499..370695 /locus_tag="NT01SARS_1277" /note="identified by match to protein family HMM PF00389; match to protein family HMM PF02826" /codon_start=1 /transl_table=11 /product="formate dehydrogenase" /protein_id="EJP71467.1" /translation="MKILCVLYDDPISGMPESYARDDLPKLDKYPDGMSLPSPSSVDF IPGQLLGCVSGELGLRKFLEDAGHTLVVTSDKDGEGCTADKELVDADIVISQPFFPYY LTREKMESAPNLKMAITAGIGSDHVDLQAAMDNKVDVVEVTYCNSRSVAEHIVMMILS LVRDYHNQHQIVKDGGWNIADAVQRSYDVEGMHIGTVAAGRIGLDALRKMKPFDVHLH YFDIHKLPDEVEEELNLTYHDSVESLVSVCDVVTINCPLHPKTEHLFDDEMIGKMKRG AYIVNTARGKICDKDAVARALESGQLSGYAGDVWFPQPAPNDHVWRTMPHHGMTPHTS GTSLSAQARYAAGVREILECFFEGKPIREPYLIVQNGDLAGMGAHSYTKGTATDGSEE AAKFKK" gene 370758..371027 /locus_tag="NT01SARS_1278" CDS 370758..371027 /locus_tag="NT01SARS_1278" /note="identified by match to protein family HMM TIGR03647" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71468.1" /translation="MKLSYWKLNLIILTSLLTIWFIVSFGFGIIWSDQLDNFRIGGFK LGFWFSQQGSIYFFILIIFIYVLLMNKLDKRFYSKESDNKSQLKE" gene 371027..372775 /locus_tag="NT01SARS_1279" CDS 371027..372775 /locus_tag="NT01SARS_1279" /note="identified by match to protein family HMM PF00474; match to protein family HMM TIGR03648" /codon_start=1 /transl_table=11 /product="Na+/solute symporter" /protein_id="EJP71469.1" /translation="MELQSLTYLFVGISFTLYIGIAIWSRARSTNDFYIAGKGVSPVA NGMATAADWMSAASFISMAGLIAFLGKDGSVYLMGWTGGYVLLALLLAPYLRKFGKYT VPDFIGTRYYSKAARLVAIICLIFISFTYVAGQMRGVGIVFSRFLEVDINTGVIIGML IVFFYAVLGGMKGITYTQVAQYCVLIFAYMVPAIFISLLITNNPIPQLGFGDKLIGSS TYLLDKLDQLSIELGFNAYTDNTKSNIDIFFITAALMFGTAGLPHVIVRFFTVPKVSD ARKSAGYALVFIALLYTTAPAVAAFAKINFIDSVQKVEYESAPDWFKNWENIGLIAWK DKNEDGLIDYSSGNALEGIKPKYTNEQGKYGERNVANRPDDSNKNEVYIDNDIMVLAN PEIAQLPNWVIALVAAGALAAALSTAAGLLLVISASISHDLMKQMLMPKITEKQELFF ARCAAAVAIFIAGLFGIYPPGFVAQVVAFAFGLAASTIFPALFLGIFYKRLNKEGAIA GMLAGLLATSSYIIYFKFLNPTINNAEYWILGISPEGFGFLGMILNFGVALIVSNFYS NPPKEIYQMIDEIRKP" gene 372779..373501 /locus_tag="NT01SARS_1280" CDS 372779..373501 /locus_tag="NT01SARS_1280" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="EJP71470.1" /translation="MKKTVAVIGSRGAIGNAVVDTLLADESVEAVFKFSRAENTEHDD KVKHIFIDIEDEESIKQATESLPEDTKFDLIFVATGILHDEKNVFPEKSIKDISFDKL IKVLTINTIGPTLVGKYFIPYLRKDSKSTFAFLSARVGSISDNKLGGWYSYRASKTAL NQIIRNFSIEVARSNKNAIFIGLQPGTVKSFLSKPFEKNVKSENLFTPEFSAKKMLEV IEKLDSSDSGKVFAWDGEEINP" gene complement(373543..374271) /locus_tag="NT01SARS_1281" CDS complement(373543..374271) /locus_tag="NT01SARS_1281" /note="identified by match to protein family HMM PF01036" /codon_start=1 /transl_table=11 /product="green-light absorbing proteorhodopsin" /protein_id="EJP71471.1" /translation="MKFLLMMVGAVALPAFAADLQTSDMTGVSFWLVTAAMLAATVFF FAERDRVHGKWKTSLSVAGLVTGVAAWHYLYMRGVWVETGSSPTVYRYIDWLITVPLQ IIEFYLILKVCTNVSSGVFWRLLVASLVMLIFGFVGETGGNATVMGLIATVAWLYIIY EVFSGEAGQLNASSGNAAAQSAFNTIRWIVTVGWAIYPLGYWLGAMGGGDMAQANLIY NLADFLNKIAFGLAIYVAAVSDSE" gene 374442..375677 /locus_tag="NT01SARS_1282" CDS 374442..375677 /locus_tag="NT01SARS_1282" /note="identified by match to protein family HMM PF02515" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="EJP71472.1" /translation="MLIYLLRVNMSKISSSKPLNGIKVLELSNMITCSLATMTMASQG AEVIKIEPTLIGDKMRPLGTQKNGVSGFFHNCNRGKRSLAIDLKSSSGVKAVTELASQ ADVLVHNYRPGVMDKLGLGSKDIRDNNSQIIYIAVSGFGTKGPMANLPAFDHVIQGMS GFTDLQSSDENNFEFIKTFICDKVTAYTVCQAATAALFARTNTNKGQHIDISMLHACL SFMWPDGMMHRTLKDDDKIEMSPGSDYFQTINYSDGGVAVAALTNEHYEVLLPMLGYP EYVGMPLFSSIASRMTNMKEVNKALKNPKNDIGVEKALEILIAADIPCSPCIKRDEIE LDEQIKAIGALETYVTEEMGKLTVTSPPVLFEGELASHAKPSPLLGQHGHEILTELGW SEAKVQELIESGTLLITSP" gene 375720..376202 /gene="coaD" /locus_tag="NT01SARS_1284" CDS 375720..376202 /gene="coaD" /locus_tag="NT01SARS_1284" /EC_number="2.7.7.3" /note="identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510" /codon_start=1 /transl_table=11 /product="pantetheine-phosphate adenylyltransferase" /protein_id="EJP71473.1" /translation="MRVAIYPGSFDPITYGHMDIIDRASGLFDKIIVAVAKSEAKNTL FSLEDRVKLATTIYKDNPKVEIVDFPRQLTVDVAKDHNACAIVRGLRAVSDFEYEFQL ATMNRSLAPDIESIFLTPKESLIYVSSSLIKEICDLKGDISKFVHPAVEQALKAKLGS " gene complement(376199..377008) /gene="mutM" /locus_tag="NT01SARS_1283" CDS complement(376199..377008) /gene="mutM" /locus_tag="NT01SARS_1283" /EC_number="3.2.2.23" /note="identified by match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577" /codon_start=1 /transl_table=11 /product="DNA-formamidopyrimidine glycosylase" /protein_id="EJP71474.1" /translation="MPELPEVETTVRAIRPFENTILKKIIIHNRNLRWQVDENLEDLV ANKKILTITRRAKYILIHFSKYSLMLHLGMSGKLRIQNNQDNYFKKHDHVEFIFKDKK IIFNDVRRFGSLHVTKNPNEHILIKNLGVEPLSRKFDKNFLFKLCSETNLEIKKLLMD QRKVVGVGNIYASESLYLSSISPLRKSKEINLDECEKLVKSIKKILKYAIKMGGTTLK DFYSADGSEGYFKLKLNVYGLENQNCKKCSNKIEKIIIGQRSTFYCKECQT" gene complement(377012..378346) /locus_tag="NT01SARS_1285" CDS complement(377012..378346) /locus_tag="NT01SARS_1285" /note="identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844" /codon_start=1 /transl_table=11 /product="outer membrane protein TolC" /protein_id="EJP71475.1" /translation="MFSKYKSKLFLIILLSGHLTAENLLDIYNEALENDPTFKAAEYS YLADKEIVVQGRAALLPSITLSGSTNWNEYYQDDVLQQEYNSFSKSARVSQPLFRLDT WFNFKRSKSLTNAAEAEFAYEQQNLILRTAELYFGVLRAIDNLNAAISEEKAIKKQLD QAQQRYEVGLSAITGVQEAQLAYDLSKAARINNEGNLFSAREALNALIGREIFSLDEL GENLQISSPFPNSKEDWVNLALKNNYQLKASYLRKDAAKSNARSAASNHLPKIDIVGS GSDSETNQFNYEGFSINGQGIPVPAVTGRRNYAIQLSVPIFQGGAVSSRRKQAYSQYN QADENTLFTERRIIQEVRSQFSNVNTLVANVNAQKQAVISATSALEATQVGYKVGTRN VVDLLQAEKNLYSAEKNLANAKYDYILANLRLALAAGTIDPGDIIEINNLLN" gene 378557..380449 /gene="parE" /locus_tag="NT01SARS_1286" CDS 378557..380449 /gene="parE" /locus_tag="NT01SARS_1286" /EC_number="5.99.1.-" /note="identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF02518; match to protein family HMM TIGR01055" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV, B subunit" /protein_id="EJP71476.1" /translation="MAKNTYDSKAIEVLSGLDPVKKRPGMYTDTSCPNHLIQEVLDNS VDEAIAGHCSNIKVKIYKDGRIMVSDDGRGMPVDIHPEHKVSGVELILCKLHAGAKFS GEEYNFSGGLHGVGVSVVNALSENLKVNIKRDSQEFEMHFNNGDKKKDLKVVGEVGAR NTGTSITFKPNVKYFESDEIKIKDLKHLLKAKAVLCPGLTIDFNYEKKSEKIKWHFED GLKSYLDDSSEGLDLVLDESIVSSKSTETQEVDFVINWLNKSYKDMLDETYVNLIPTA QGGSHLNGFKSGLLEAMKEFCEIRSLLPKGLKINAEDVIANATFVISSKLQNPQFAGQ TKERLDSKDHMAFVSSATKDILSIWLNTHTEEGEKIAELAISAAQSRAKASSTVQRKK TFKGPALPGKLSDCNSEDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTW DLESQEIIKSQEIKNLSTAIGVLPGNSDISGLRYGKICILADADSDGLHIATLLCALF LRHYKSLVQDGRIYIAMPPLYRVDCGKEVLYALDEIQKDKVVDDFKKKKGKPKINIQR FKGLGEMNPSQLRETVMDPNSRQLVRLSISATDNANAMMDLLLSKKNAPARKEWLEKK GSLVRL" gene 380451..382694 /gene="parC" /locus_tag="NT01SARS_1287" CDS 380451..382694 /gene="parC" /locus_tag="NT01SARS_1287" /EC_number="5.99.1.-" /note="identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01062" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV, A subunit" /protein_id="EJP71477.1" /translation="MAKDQFESISLKKYAEDSYLNYAMYVILDRALPNVGDGLKPVQR RILYAMSELGLDASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVD GQGNWGSQDDPKSFAAMRYTESKLTGFANLLISELKSGTVDWQPNFDGSLLEPVIFPA KIPMILLNGTSGIAVGMATDIPSHNMNEVIDATISLIDKPKSDLKDILKIIKGPDFAN HATIIANEDELSEMYSTGRGGFKIQAHWTQEKNQIIINALPYQASGSKILEQIADQMV NKKLPMVVDLSDEGDHEEPVRLVITLKSNRVNATDLMNHLFASTDLQKSYRMNMNLIS LKGGPKVFSLVDLLKEWLVFRKETVKRKLEHRLDQVNDRLHILEGLLTIFIDIDKVIK IIRNSEEPKKDLIKKYKLSEIQANAILEIRLRQLAKLEQLKLENEQNELAGEQNEIEK ILKSKSRLKTLIKQELLEIKDNFGDERKSPISAESDAKIFSEEETMVTESVTVVLSKA GWVRSAKGHEIDPNSLSYRGDDSLQDFARGKSNQLAVFLDSNGKAYSIPSHSLPSARG MGEPITGRLSADSGVKFVSASVGVDDDRFLIMNTGGYGYIAEYKNMISNKKSGRAFMR LPENAEMLKAIPVRKNHTHIAAVSNIGKLLIFEIDELPILGKGKGNKIINIPKDKLAA GEEFMAHAQLLATDSSLRIEVGKRFVTLKPKDWSEYILSRAKRGKKVGKLVNIERLIE EVNESSE" gene 382718..383203 /locus_tag="NT01SARS_1289" CDS 382718..383203 /locus_tag="NT01SARS_1289" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71478.1" /translation="MVSVEKNNTSDYVISLSPNSSLEGAARFLFLASITLVCGGIAVI FYFFGAFMILPFAGIELTILFIAFYLSFKWSSKKEKIYISQEIVKIEKGINKAEYLWE EFRTFTSFQVKKDVNKMTRLSFRSKGKDVYVGDFLNEDDKNKLKDEISLIIQELNAQI P" gene complement(383200..384456) /locus_tag="NT01SARS_1288" CDS complement(383200..384456) /locus_tag="NT01SARS_1288" /note="identified by match to protein family HMM PF00365" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="EJP71479.1" /translation="MKKNAFYAQSGGVTSVINATAAAVILESKKYKSKIGKVYAGKNG ILGALREDLIDTSKEKVSAIRNLRETPGGIFGSCRFKLKSLKENKKEYTRLVDVFKAH DIGYFFYNGGNDSADTAFKVSQISNEMGYPINCIAIPKTVDNDLAVTDNCPGFGSAAK YIATSIMEASLDVASMAETSTKVFILEVMGRHAGWMAAAGSLARVDKNDAPHIILFPE IVFDEKKFLMQIKKIVKDNGYCVIVASEGVKNKKGKFLAESDRKDAFGHSQLGGVAPF LSNLINKKLKLKNHWAVSDYLQRSARHIASKTDLAQAEAVGTYAVKYAVKGMNGVMPV IKRGSGKKYSWKIEPASLSKIANVEKKLPKSYISKDGFDVTKKAIDYLRPLILGEAFP KFSNGIPASNKLKLQMVKKKLKSWNI" gene 384510..385805 /gene="mpl" /locus_tag="NT01SARS_1290" CDS 384510..385805 /gene="mpl" /locus_tag="NT01SARS_1290" /note="identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase" /protein_id="EJP71480.1" /translation="MRIHILGVCGTFMAGLSQILKESGHDVSGSDVQFYPPMSDYLTN INIKTIQGYEAKLLPKADLYVIGNALSRGNESVEHILSKNLPYVSGPEILGRELKDRN VYAVSGTHGKTSTAYMLTHILDYNGKDVGYLVGGISENFKNPARLGKHKSFVIEADEY DSAFFDKRSKFIHYYPNNLIINNIEFDHADIFDNLDDIKKQFHHLIKVIPNKGNIIYS KDDQNVCEVLSKGYFCNLIQVNGENIKIDLSSKKLVVDNETYILQDLPLIGEHNFRNY VAAILAAQIEGISINKSIESLKSFLGVKRRMEKVIEHNGIRVYDDFAHHPTAIKLSTK AVRDENPNKKILGIVELGSNTMSSGYHKDNLFNSLNYVDRTIILDRQKVYQADDIFNS TEDLLFELRKIAKDYDIILIMTNKDSQKFITPLKDHFEN" gene 385795..386385 /locus_tag="NT01SARS_1291" CDS 385795..386385 /locus_tag="NT01SARS_1291" /note="identified by match to protein family HMM PF02190" /codon_start=1 /transl_table=11 /product="peptidase S16, lon domain protein" /protein_id="EJP71481.1" /translation="MKTNNLPVFPLGIVALPGTIQYLQIFEPRYLKMVKDCMSNGHGF VIVFQSSHSNGIDTEISKKGSYVEIIDFNNLPNGLLGITVKSINKVIINDLTQLEDGL HIAKTQPLVDPEVDDQALLAEFPELTNILSQLVKHPKINDLKLNVDFNSADSIAYHLA GLIPISSIYKQNLLEAFDAAQRFEILSKYIDEISSN" gene complement(386388..386813) /locus_tag="NT01SARS_1292" CDS complement(386388..386813) /locus_tag="NT01SARS_1292" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71482.1" /translation="MEISFLDSLYQFVTNYKKFIFWLGSISAFIFIFSLLSIKWLVAL IPSDYFVKKRASKFKNTYPYLWIISLIIKNILGYSLVVGGIFMLVLPGQGIFTIVVGL MLSNYPGKYSIERRLISIPSIHKGINWLRKKSNQPPIEI" gene 386898..387242 /locus_tag="NT01SARS_1293" CDS 386898..387242 /locus_tag="NT01SARS_1293" /note="identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090" /codon_start=1 /transl_table=11 /product="iojap-like protein" /protein_id="EJP71483.1" /translation="MPKNKLSQICNKSLEDSKAEDVLNLNVKGISSFADEIIIATANS NRHAKSISEKLVDLLKNEKIHIIGVEGEVESGWILVDCGSTVINIMKKEQREFYDLEG LWGEMNLTDALS" gene 387243..387707 /locus_tag="NT01SARS_1294" CDS 387243..387707 /locus_tag="NT01SARS_1294" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71484.1" /translation="MKIKIINVGNKLNKWESDGIGYYQKQLPKNIKISFINLKGQQNP NLSKKEILQKEGKQVLSKISRSDFVISWDSTGKQLDSYEFSNFILDSTQSKKEIFFII GGSHGLSMEVLNRSNQVFSASLLTFPHRLFRLILMEQIYRAFAIMQNKPYHK" gene 387704..389545 /gene="mrdA" /locus_tag="NT01SARS_1295" CDS 387704..389545 /gene="mrdA" /locus_tag="NT01SARS_1295" /note="identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2" /protein_id="EJP71485.1" /translation="MIDLQERFSERKNFFNRLVLVYILFGILFGFVIYNTYSLQVSSF SDYEIAALKNKSREILVQPKRGIIYDRNGKILVNNEPSYNLIFKPSQVTNLDELINEI NIFIPLNEKDISLINKNFKKAASLNRELTLKQNLSQEEISKFEVRRHKYENVFIAERF SRKNVYPDLFSHSIGYVGILEGDALEQKLSNQSIKPKETIFNYSSGFIEGKTGIESIY DDNLRGKFGKRIYEVDASGKLLNLLNEIPPVNGDDIKTSLDIESQKAAYEAIQSRRGA IVAVDLSSGAIVTYLSSPSFSTNQMANGLSNEEFQALITNENKPFFDRAVQGRYSPAS TIKPAIGLFGLENKIIDWDYTIDDPGFFVLPEDNRIYRGWKKGGHGNINLNDAIIESS NTFFFSLAYQSDIDNLRDHLFKFGFGRNICADCFLPDTGLLPSPEWKMNTHNFGWFKG DTVNMGVGQGYLSATPIQLAYYAAMLANKGKVNKFSFVQDFYGSEKDIFNLENVDEVD WNKLHSSMIGVIDNPKGTAGRLRALKDYKIAAKSGTVELVSTDTKEDYKIIRETEGNR DHAIIIAFGPMPNPKYAVSVVIENGESGGSVAGPVAIAVMNALIEND" gene 389538..390641 /gene="mrdB" /locus_tag="NT01SARS_1296" CDS 389538..390641 /gene="mrdB" /locus_tag="NT01SARS_1296" /note="identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210" /codon_start=1 /transl_table=11 /product="rod shape-determining protein RodA" /protein_id="EJP71486.1" /translation="MIRKFLNLFRNGVYFDQYLFISITLLSLMGLVFLFSASQGNIET TIKQSFFVLFGLILMFAVSQPDPDFYKNNSLLFFLISVLLVVITLLTGKEINGAKRWL DLGFFTLQTSEIIKITLPVFLASYLFDKSLPISFKNTIVSLILIFFIVNLVRIQPDLG TSLVILIAGLYILFLAGLSWRFIGVSAGLFTLSLPYIWNNFLEPFQKQRILTLFDPNS DPYGSGWNITQSKIAIGSGGFTGKGYQQGSQAHLDFLPETETDFIFSVIAEEFGFFGV CVLLGIFFFILLRCLYLALNARDRFCRLTIGGLSLLFLSTVFINLSMVVGIIPVVGMP LPFISKGGSSLLSFYIAFGIIISMATHKKLMRR" gene 390638..391525 /gene="mltB" /locus_tag="NT01SARS_1297" CDS 390638..391525 /gene="mltB" /locus_tag="NT01SARS_1297" /EC_number="2.4.-.-" /note="identified by match to protein family HMM TIGR02282" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase B" /protein_id="EJP71487.1" /translation="MKNLILIAILFNASIFADYSNHKDSKEVIDELVNEHGFEESYVI NVLKQAKKRKTALNSVARPAEKTKTWDDYRAIFLKKKRISDGKKFIQNNITVLERAEK EFGVPKEVITAILGVETDYGNIMGSYRVIDSLTTLGFDDPRRSKFFKSELIQFFILTR ENNLDILKVKGSYAGAMGYGQFISSSYRAYAIDFDGDGYVDLFNSLEDAIGSTANYLK RHGWKKEGSIVTRVYPNNVRKFYKPHESLTQFIPLTFTENGEELHFVGDDNFRAIARY NISDVYAMAVYYLSEEFKK" gene 391522..392664 /locus_tag="NT01SARS_1298" CDS 391522..392664 /locus_tag="NT01SARS_1298" /note="identified by match to protein family HMM PF00768; match to protein family HMM PF07943" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase DacC" /protein_id="EJP71488.1" /translation="MKKIILTIIILPLVAYCQSFVPNAPELDLKSYILIEPNTNTVIA EFNSSDLIEPASMTKVMTGYVVSDQIKNELISLNDQVLISEKAWKMEGSKMFIEVGKK VSILDLLKGIIIQSGNDASVAIAEYVGGTEDGFVDLMNSYAGALGMNDTNYINSTGLP AEGHFTSARDLATLTAKFINNFPDEYALYKEKQFTFNNIKQLNRNKLLWRDESSDGVK TGHTSTAGYCLIGSAERGNMRLITVVAGSDSDNDRFLSTQRLLEYGFRFYATQKYFDP NKEYVSAKVWGGRSEQIQLGVSDEISITLPRTSFKDIKVDYEYKSNVQAPIIKGQVMG SLKIISDGEVVKTADLIALENVEAKGFFGRLWSSFVLWVMSLFGIS" gene 392667..393497 /locus_tag="NT01SARS_1300" CDS 392667..393497 /locus_tag="NT01SARS_1300" /note="identified by match to protein family HMM PF01063" /codon_start=1 /transl_table=11 /product="D-amino-acid transaminase" /protein_id="EJP71489.1" /translation="MDQIHAIYNGNFDNLEDIKVSPLSRAYTFSDSVYEVIPFFNNEV IAFNRHIERLQYSCRSMNIDANIDQSSKEILQLISLSKIKDGYVYYQISRGVDPIRSH MYSSKLHAETFGYVTSHKFEEQTLKVALCEDIRWQRCDIKSTSLLGNVLSMNEAKDQA CDEVIMYKENKITEGGASNVFFIKNNRIFTPSLSSNILPGITRELLISEAAKHEVKIM EQDCSLDDLVKAESVWLTSSTKGLAPVSEIVNQNSNLDVSHPLFKKCQNIFKDAYFKE " gene complement(393487..394446) /gene="holA" /locus_tag="NT01SARS_1299" CDS complement(393487..394446) /gene="holA" /locus_tag="NT01SARS_1299" /EC_number="2.7.7.7" /note="identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128" /codon_start=1 /transl_table=11 /product="DNA polymerase III, delta subunit" /protein_id="EJP71490.1" /translation="MPKYIDKSEKIFFIYGDEIVLQNNARDYICNFYKKNGFDEKKII TSKDFPNISQIITQNAGGSLFGSRIIVEIIHEGGKIPKDIMDVLSFKNIDNLVFIIRS SISKISKKASWIKQMDQSAVIIECNKLKSFQEKAWLKDQLSFISEGHMKEYTERILDL FPGNLVAQQNEINLLKLSYEKDSKISITSFEDQGEFSPYELEDKIIELKKNHALRIIK SIHKNDDHYAQLLVWIIGKVINVSVIALQNPNREKGLSNAGIWQSKISSYKHFVKNIS LKKIMPLQKKVYELDLASKGLGGITKKQFWQELDNIVIALTTP" gene complement(394457..394891) /locus_tag="NT01SARS_1301" CDS complement(394457..394891) /locus_tag="NT01SARS_1301" /codon_start=1 /transl_table=11 /product="nucleoside-diphosphate-sugar epimerase" /protein_id="EJP71491.1" /translation="MLLISCCNFNVIDYSETGLNSYDLNFDSDIPIKLQSHLIFSLGV NKNIKEKKSNIIEVSDFVLKTYDVYSGDALRALETEVKSSLMLSISKGAKKINKKLMV MKRYNANELNILAEKEMLDFIRDEIYNEFVNQILTEVNLIEV" gene complement(394942..397353) /gene="leuS" /locus_tag="NT01SARS_1302" CDS complement(394942..397353) /gene="leuS" /locus_tag="NT01SARS_1302" /EC_number="6.1.1.4" /note="identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396" /codon_start=1 /transl_table=11 /product="leucine--tRNA ligase" /protein_id="EJP71492.1" /translation="MTKEYNPKSIEEAVQEKWESNKTFESKIDDREKFYCLSMFPYPS GKLHMGHVRNYTIGDVISRYKRMQNYNVFQPMGWDAFGLPAENAAIENKVSPKEWTNQ NIQNMKTQLKSLGLSYDWSKELRTCDESYYKWEQLIFKKFFDAGLVYRKKSMVNWDPV DETVLANEQVIDGKGWRSGAQVELKEIDQWFIKITNYADELLESLDDLDWPENVKLMQ KNWIGKSNGAEIKYQIIGTKDFLTTFSTRPDTIFGVSFLALSPNHPMSIEISKENEKI KKFLEVCKESKAAEADMAKADKLGIDTGIRAMHPITKEEIPIWIGNFVLLDYGTGVVM GVPGHDSRDFEFASKYNLDIKQVIQSDRTEDLPILDKGILVNSDKFNGKTSEEASKEI IQELIDNGYGEELVQFRLRDWGVSRQRYWGCPIPVIYKNGEPEIIDENDMPVILPELD DGAAPVPLSQIKDFVELGNGITRETDTFDTFMDSSWYHARFTSAGNSKQIFDENTKYW LPVDLYIGGIEHAILHLLYSRFFHKALRDIGMIEGDEPFKRLLTQGMVLKDGAKMSKS KGNTVDPQSFIDKYGADTVRLYMMFTSPPDQSLEWNESSVEGASRFLNKVWKLIEGKK YIELKIDDLKFSKDDLALRRKSHATLKKVQNDYEKRFGFNTAIAAIMELLNFIPEKFK VDELNDSSKFCLNEAIVFILKMLSPIAPHICDQLWSEYEYDAKNIESWWPEIDESLLA IEEFELIIQVNGKVRGKINIEVNKSKTEIEELAKNVDNVKSHIGSVNVKKTIYVENKL INFVV" gene complement(397350..398696) /gene="accC" /locus_tag="NT01SARS_1303" CDS complement(397350..398696) /gene="accC" /locus_tag="NT01SARS_1303" /EC_number="6.3.4.14" /note="identified by match to protein family HMM PF00289; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, biotin carboxylase subunit" /protein_id="EJP71493.1" /translation="MSKKILIANRGEIALRALRACRELGLKTVSVYSEIDKDLKHLKF SDETVCIGPAIPAESYLNVPSILSAAELTEVDAIYPGYGFLAENPDFAEQCDKSGFKF IGPNSDTIRKMGDKITAKAFVSKFNIPIVPGYSDDLPEDDEQLKTIVNNIGYPVIIKA TAGGGGRGMRIVEAEDELLSTIDITMQEAGNAFGNNKIYIEKFIENPRHIEVQIVGDG KGNAIHLGTRDCSMQRRHQKIIEEAPALDIDSQNLQNILDSCVNLCKEINYEGVGTLE FLYENKNFYFIEMNTRIQVEHPVTEMITGFDIVKAQLRIALDLGITLNQDEISFNGHA IECRINAEDPETLQPSPGVISKMHTAGGFGIRYDSHIYGGYYVPPFYDSLLAKIITQA NTRKSAIKRMISALDEFFVEGIKTNQPLHQDILNDKKFIENEHTINYLEKEFLKLK" gene complement(398697..399137) /gene="accB" /locus_tag="NT01SARS_1304" CDS complement(398697..399137) /gene="accB" /locus_tag="NT01SARS_1304" /note="identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, biotin carboxyl carrier protein" /protein_id="EJP71494.1" /translation="MDIRKIKTLIEMLEASNLNEIEVSQGEESVRISKSSGEIKVLQD SNIGINNESQSINKIDNNQIENEIKGNQVTSPIVGTFYRKPSPDKEPFVKVGDIVNKG DVLCIIEAMKMMNEIKSEFDGKISSIEVDDGQPVEFGQTIIVIE" gene complement(399146..399577) /gene="aroQ" /locus_tag="NT01SARS_1305" CDS complement(399146..399577) /gene="aroQ" /locus_tag="NT01SARS_1305" /EC_number="4.2.1.10" /note="identified by match to protein family HMM PF01220; match to protein family HMM TIGR01088" /codon_start=1 /transl_table=11 /product="3-dehydroquinate dehydratase, type II" /protein_id="EJP71495.1" /translation="MNILVLNGPNLNLLGLREEDIYGSESLASIEEKLKNLAHESNCE IEFFQSNAEHELINSIQNAYENQVDVIIFNPAGYTHTSVALRDALLAVKIPFYEVHIS DINSREDFRKKSYFSDIAYKVFSGHGTNGYIMALKEIIENK" gene complement(399618..400031) /locus_tag="NT01SARS_1306" CDS complement(399618..400031) /locus_tag="NT01SARS_1306" /codon_start=1 /transl_table=11 /product="protein-disulfide reductase" /protein_id="EJP71496.1" /translation="MKKSLFIFALLMNFQTDVLSDENNYLFKQEKILPANEVFVISTK NENNKIYVEWRIRENYYLYFDSIKIQNKKEPIRYKILESSVYETEDEYFGKTKIYKDY LKIVFNDNYDESDHAIFYQGCAEQGFCYPIQKYIL" gene 400321..401181 /locus_tag="NT01SARS_1307" CDS 400321..401181 /locus_tag="NT01SARS_1307" /note="identified by match to protein family HMM PF07859" /codon_start=1 /transl_table=11 /product="esterase/lipase/thioesterase" /protein_id="EJP71497.1" /translation="MQNVKNDEIKNLRSAIEKRRTNLRISKKPKKEIKKVDHYLDKDE SILLREYSPYKVDNKNIILFFHGGGYVLNSVFTHDDMVAYFSEKLRTRIFSLDYKLAP ENKFPAALENAIQAVEWLEDKNISSANISLCGDSAGGHLAASLTHHFTNEDKKIHSQF LMYPMCDPNCDSESHKIFGDKYFLTNQAMKWFWKHLQKDEIDMTDEMFNLLLINKKIT ADHTFIITAGFDPLHDEAEKYASLLHNMNNNVKQLHYPSMFHGFATMTRLKTANRAVN DFLREYKKIL" gene 401178..402764 /locus_tag="NT01SARS_1308" CDS 401178..402764 /locus_tag="NT01SARS_1308" /note="identified by match to protein family HMM PF00005; match to protein family HMM PF08352" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter, ATP-binding protein GsiA" /protein_id="EJP71498.1" /translation="MKNIVEVKNLSINFKVRDGSFSAVKDISFNIENNKTLALVGESG SGKSVTAMSIMQLLPMPQASYDLPSSITFNGKEIIGASKKDLLSIRGNIISMVFQEPM TSLNPYHKVGDQITESVLLHTDKSKKEAYEEAIELMRLVEIDDVERRFKSYPHELSGG QRQRIMIAMALVNKPKLLIADEPTTALDVTIQAQILDLMSKLKKELGMSILFITHDLG LVKEFSDQVCVMQDGKIVEQGNTSTVFENPSHPYTQKLLNAEPQPKENINGELNPLIE IDGLNVFYTMPSINFLKKNKFHAVKDVSLNIYKNTTIGLVGESGSGKSTLGKAIANLI NFDGKIAFNGQEIAKSSKDIKKHIQIVFQDPYGSLSPRMTVGEIVGEGLGVHFRLSKK ESTSRIDKVLTDVGIELSSKNKYPHEFSGGQRQRIAIARSLIMNPAFMILDEPTSALD RSIQIQVINLLKDIQDEYKLTYLFISHDLKVIRSMSDYIFVMKDGKIVESGISSDVFE YPKEKYTKKLLAAALRYASD" gene 402780..404438 /gene="ilvD" /locus_tag="NT01SARS_1309" CDS 402780..404438 /gene="ilvD" /locus_tag="NT01SARS_1309" /EC_number="4.2.1.9" /note="identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110" /codon_start=1 /transl_table=11 /product="dihydroxy-acid dehydratase" /protein_id="EJP71499.1" /translation="MSSRKYSKELVDGPNQAASRSMLRGVGFTSEDFTKPFVGIASTG AKVTPCNMHINKLSEIVEDSINNSGGKGVLFNTITVSDGISMGTQGMKYSLISREVIA DSIETVVGCLGYDGLIAIGGCDKNMPGCLIGMARLDRPSIFIYGGSIKPSNENTDYVT VSEKVGEFSKGEINEDRLIHYEKISVEGPGSCGGMYTANTMASAVEALGMSLPGSSSQ DAVSESKKDDCVSAGEAIMNLLESDIKPSDIMTREAFENAITVVIALGGSTNAVLHLL AIAHSIGVELELDDFTKIGKETPVLADLKPFGSHYMSELNANGGIQPLMKLLLDKGLL HGDCLTVTGKTLSQNLENVTPYEKKNIIRDFDNPIKENSHLRIMYGNLAVDGAVAKIT GKEGTSFEGNARVFNSEEEGVEAILSNSINDGDVIVIRYEGPKGGPGMREMLKPTSAI MGLGLGDKVGFITDGRFSGGTHGFVVGHISPEAAEGGNIALVENGDTILIDAENDQLI LKVEDKVLDERRSNWTNPIKTPKKGVLAKYAKSVKSASLGATTD" gene 404440..405432 /gene="hemB" /locus_tag="NT01SARS_1310" CDS 404440..405432 /gene="hemB" /locus_tag="NT01SARS_1310" /EC_number="4.2.1.24" /note="identified by match to protein family HMM PF00490" /codon_start=1 /transl_table=11 /product="porphobilinogen synthase" /protein_id="EJP71500.1" /translation="MIDRKFPKSRLRRLRRSSNLINLVSENTLSANDLIQPLFIKEDL DGSEPIDSMPNINRYGLKDILKEIEDVLHNGINTIALFPVINPDKKDENGGEAVNENN LISTAIKNIKKEFPEIILIADVALDPYTSHGHDGVLLDGIVDNDSTLDVLVEQSLVLA NAGADIIAPSDMMDGRIKFIREVLENSNLKDTILLSYAAKYNSKFYGPFRDAVDSASN LGESSKSSYQMNPSNINEALQEVAMDINEGADIVMVKPAMPYLDVIHAIKQEFKIPTF AYQVSGEYSMLKLAIEKGWLHEDVMLESLLSIKRSGADAILTYAAKDIAKEISK" gene 405432..405758 /gene="trxA" /locus_tag="NT01SARS_1311" CDS 405432..405758 /gene="trxA" /locus_tag="NT01SARS_1311" /note="identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="EJP71501.1" /translation="MSDVVEVQNSEDFQEKVIQSDKPVLVDFWAEWCGPCKQLAPLVE EIAKEHKDEITVCKMDVDNNRDTAASYGIRSIPTLMIFSNGELVGTEIGALTKQQLDE FVRSKI" gene 405873..407150 /gene="rho" /locus_tag="NT01SARS_1313" CDS 405873..407150 /gene="rho" /locus_tag="NT01SARS_1313" /note="identified by match to protein family HMM PF00006; match to protein family HMM PF07497; match to protein family HMM PF07498; match to protein family HMM PF08206; match to protein family HMM TIGR00767" /codon_start=1 /transl_table=11 /product="transcription termination factor Rho" /protein_id="EJP71502.1" /translation="MNLSEIKDKPISELVDIASELGLEDLGRLKKQEIIFRIFKHKAS EGTDIFGGGVLEILNDGFGFLRSPQGSYCAGEDDIYVSPSQIRKFGLRKGDSVEGKIR TPKDKERYFALIQVDTINGEEPAKTKNKILFENLTPLFPTERLMLEQGSGSNEDLSSR IIDLIAPVGKGQRGLIVSPPKAGKTLMLQSIAHSIKANNPEVELIVLLIDERPEEVTD MSRTVKGEVVASTFDEPPTRHVQVANMVIEKAKRLVEHKKDVVILLDSITRLGRAYNS VQPASGKILSGGVDSNALERPKRFFGAARNLEEGGSLTIIATALVETGSKMDEVIYEE FKGTGNMEIHLERKIAEKRIYPAINIRRSGTRREDLLTSDDELQRMWVLRKILDEMED AQAIQFLIDRIKTHKTNDEFFNSMKNGNGKKTK" gene complement(407143..407793) /locus_tag="NT01SARS_1312" CDS complement(407143..407793) /locus_tag="NT01SARS_1312" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71503.1" /translation="MNIIDTSSSPLIANEEEMIKNIPLFKIRPINYLLPEGIFTDVIF QSTASVKNFKNFEICNKKNIYTMGQSTKFILSSYGVESSCPTPPGSDELISLLGKNLS GRRFLIVKGVDGLNKIKEFLDENMAFSEEIICYERIELNNYNDLKSEFEYASAVIFTS VLSAKMYFKNIHSKDNDVTLFSISKRVKSEISQMGYESKIIDYFSDSLLDDIKKAI" gene complement(407780..408646) /gene="hemC" /locus_tag="NT01SARS_1314" CDS complement(407780..408646) /gene="hemC" /locus_tag="NT01SARS_1314" /EC_number="2.5.1.61" /note="identified by match to protein family HMM PF01379; match to protein family HMM TIGR00212" /codon_start=1 /transl_table=11 /product="hydroxymethylbilane synthase" /protein_id="EJP71504.1" /translation="MTIRIASRSSKLALKQVEIFSKAFLLEDYKLVEVLTSGDKMSAK GEVMFDKANFVNEIEQMIQKNSVDIAIHSAKDMPAQETEGLKHFYFIETQKRKINDLI IFRNDTDTVFEKNMKLGTSSLRRIMQAKFHMNAKNIQLLNGNIDTRIKKLNDGMYDCI ILAEAGLSRLSSLLEKQNYKQLEHITCSGQGVLAVQWKEGSKVGDFIKSSLLFDQMKE LNEQIKMERNLLKKLNADCNSAISIFASNGFLQGEIFGRDKFITFSGNNVDQLYKDIT ANNGLNLLNEHH" gene complement(408624..409193) /locus_tag="NT01SARS_1315" CDS complement(408624..409193) /locus_tag="NT01SARS_1315" /EC_number="2.1.1.-" /note="identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, RsmD family" /protein_id="EJP71505.1" /translation="MKNNIRITGGYLKGKNIPFDFKNSLRPTSSKLREVLFNWIQFEI KGMECLDLFAGTGALGIEALSRGAKKTIFIELNKKNYQTLKIAIKKLDLNEKSMVLFK DGLSWIKKSNLSNLDLILIDPPFNSDIETSVLDSLANNKTLMRSCKIYLEFSKFSSFQ IPETFSVLKEKNVGDVRALFLKYDNKNSI" gene 409227..409691 /locus_tag="NT01SARS_1316" CDS 409227..409691 /locus_tag="NT01SARS_1316" /note="identified by match to protein family HMM PF01613" /codon_start=1 /transl_table=11 /product="flavin reductase domain, FMN-binding protein" /protein_id="EJP71506.1" /translation="MSVQDNFRLAMRRYVYSVSIMSNKDVSGNLNAITVSSVTSISME PPSLLVCINKNSRIHDSLVLESEFCINLLSKEQENLSNVCSDEEKYDQRFDDKNWNHE GVPYLQNAQSNIFCKIDKLTSYHTHTVVIGTVLDSMFKDNIATLTYVDGKYE" gene complement(409693..410304) /locus_tag="NT01SARS_1317" CDS complement(409693..410304) /locus_tag="NT01SARS_1317" /note="identified by match to protein family HMM PF00440" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="EJP71507.1" /translation="MKSYHHGNLKQELIDCACKMCERDGYTKLSIRSLAKESNVSQTA PYRHFKTKEDLYAEIAKEGFNKLYKTISKVKSKNIEENLIFLGEEYVAFGVKNANTYD LMFGTAVTDFTKYPHLFQAANQTYHHLLSLFTEYSSNKDSEFISETCIDLWAKMHGLV GLLRKLEVVPSKLLDMPDTPFMALNSINNDLNSYIKKFIRATQ" gene 410419..411360 /locus_tag="NT01SARS_1318" CDS 410419..411360 /locus_tag="NT01SARS_1318" /note="identified by match to protein family HMM TIGR01730" /codon_start=1 /transl_table=11 /product="efflux transporter MFP subunit, RND family" /protein_id="EJP71508.1" /translation="MSLFFSAFIQSVEVLEVKILDSYTITKEFPGKLLPTEQSKLAFE ISGKIKNIYVDVGDSVEKGDILAKLDDREALARLNQAKASFDLSKQILERFQDLKSQG HISIQELDKAQSDFIIAKSEFEYFKVKLEQTNLISPFKGVIQDRFIDTGTVINQGVHV LEIIDSNNVEAHISLPVSYLNDMKVGKKYKFKIDGDIKEALFYRLAPMSPGGSDSRLA IFKFDEFIKPGSIANLNLQINKSSRGTWVPLKSLSQSDQGLWALYTINEQNIVVRDLV QIIYFEDEYAFVRGTIKDGDLIVLGGAAKIIPGKIIN" gene 411363..414425 /locus_tag="NT01SARS_1320" CDS 411363..414425 /locus_tag="NT01SARS_1320" /codon_start=1 /transl_table=11 /product="putative acriflavin resistance protein" /protein_id="EJP71509.1" /translation="MKFISIFLDRPRILFLTLAFILLTGISSILTVPVQENPELAERW GNVSVFYPGATPERIETQVVNDLEIKLREIVEIDELDSIISQGYSKSHIELEDSVPPA KIEETWSRIQDKVDQIVPPQGSTIILNRTAGPPITLEYIIDWNGEGDPPLIMMSRLAE QLKRKLSSIPLTKETAIYGGTDEEILVEVDSAKMSSLNLTYQEVANAIKSFDNKKPIG VISDQYSEFLIRLKDNITNPQKIGEIPLKVINESQIIRLQDIAKISIEAASPIEDIFL YNGKQVISVSTTGTMSQRVYDYVDRVEQLVSETRQVLPEEFSIIRIYDESKYVSSKFN ELIKSFSLAAFFVLSLSFLLLGIRPGIIVTAILPFSVSLVLLGCRLIGLPLHMTSITG IIIALGLLIDNGIIVVEDYKFRRSQGLSIKDSINETLIQLTTPLAAATGTTVFAFMPI VTGEGSSVEFVGGLAITVIMSIVSSLLLALILVPVLMSYMEKIPYFANIKVHEEGYSN EKLLSQYRKFLHWAFSLPRRAILLSASLPILGFLSFTFIDKDFFPSSDRDMFRVHIEL PQNSSTLKTAERAKLVREQILESNLIDIEKDYWFVGRWMPRVLMNIVGGKEKTGSNNW AQAVFFADDYYEMIDKLPELSRLIVAKNPDVVIYIDSFFSGPPFFSDIRYDIFGDDEN VLVALGSELELIINNAPDISHTKSEATNSSTNIEFEFDSSSISLSGSSTEKFANELFA SNNGLVISSMLDSNIEIPIRVKGTVNNSNITGDSSLLSLATSNGIDTVGNFGKTLLNK RSSTITRISSQRVNIVEGWVWTGTLASETENYIKNDVEEFRKNLPPGYSIKQSGEAEV RGDSQSQIWSSAIIYILLITIGLVFALNSFRETLLILSVAILSIGLSFIGLIIGQQNF GFIATIGAIGLIGLSINDSIIVLSHIKERAKKSLMTKSDLIEVVIRSTRHIITTSLTT LGGFLPLIFASVFFRPLAWAMSVGVLGATLTALLYIPAIYILLNRVRD" gene complement(414415..414627) /locus_tag="NT01SARS_1319" CDS complement(414415..414627) /locus_tag="NT01SARS_1319" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71510.1" /translation="MIIKIIPLFAPLLIYFFIKLGKAYISSKFKKNDQKSDLMMSCHA CKTYVHESLVIQNKGLYFCSKECANL" gene complement(414628..415437) /locus_tag="NT01SARS_1321" CDS complement(414628..415437) /locus_tag="NT01SARS_1321" /note="identified by match to protein family HMM TIGR03302" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="EJP71511.1" /translation="MINLIRTFLILPMISFIVVSCNSDGPEVEQPEKIYYDQAQRRMN SNNFNGAIESLEAIENMYPFGKYAEQAQVELIYAHFMNSETEAAHSSAEKFIRLHPRH PNIDYAYFMKGLSSYTRDRDLLIRFSDTDLSNRDISGAKQSFAELTEFLTRFPDSQYV QYAKQRNVYLRNMIAKNELAAADYYYSINAYVGAIRRANYVIENIPNSSENYRALKIL ENCYEALGYSELLEDVRVVININYPNQENENTTRQRRWSWNFLDESRPRNN" gene 415521..416456 /locus_tag="NT01SARS_1322" CDS 415521..416456 /locus_tag="NT01SARS_1322" /note="identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005" /codon_start=1 /transl_table=11 /product="ribosomal large subunit pseudouridine synthase D" /protein_id="EJP71512.1" /translation="MTAIKKVPGSLSNMRLDKVSAEIFEDFSRTQLKKWIIEGRILLN GDISSPKEIVQENDEIEINPVSEEKVSWEPEDIHIDVIHETEHYLIVDKQPGIVMHPG AGCKNGTLANGLVYHYPELKNLPRCGIVHRLDKDTSGILAVARTEGFRNYFVSLLQER KIKKSYKAIVVGNVIGSFRINDPIGRDKNNRLKMAIRSDGKESESFIQKEKSYDNYSL LNVSILTGRTHQIRVHLANNQLPIIGDKTYNPAGRIAKNTSPELIEIIRNFPRQALHS FELTFFDPYLKNDVSFFSDMHKDMLKLLDEIKKHT" gene 416521..418257 /gene="ilvB" /locus_tag="NT01SARS_1323" CDS 416521..418257 /gene="ilvB" /locus_tag="NT01SARS_1323" /EC_number="2.2.1.6" /note="identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118" /codon_start=1 /transl_table=11 /product="acetolactate synthase, large subunit, biosynthetic type" /protein_id="EJP71513.1" /translation="MKLAGNDMLIQSLINEGVEYIFGYPGGAALHIYDAIFKQKEMQH ILVRHEQGATHAADGYARATGKPGVVMVTSGPGATNAITGIATAFMDSIPMIVISGQV QSHLIGTDAFQETDMIGISRPIVKHSFTVDHQENIPTIVKEAFHIATSGRQGPVVIDI PKDLTNPDELFDYEYPKKVSIRSYNPPVEPEQNQVDRVISALKESKRPVIYAGGGTIA SNASDELRELNSYIKVPVTNTLMGLGVYPGTDKYFLGMLGMHGTYQANMAMHNADLIL AIGARFDDRITNTPSKFAPKAKIVHFDVDHSSVSKIIEADIAVFGQVKNSLQAINEKL KLESEEFDEGRFTDWHNQIADWRKSHGLNHELYLEVDDSKPVLPQAAVQHIYQASEGK AFVTSDVGQHQMFAAQYYHFDEPRKWINSGGLGTMGFGLPSAMGVKLAYPDEEVICIT GEGSIQMCIQELSTCSQYKLPIKIFNINNLALGMVKQWQDMNYDGRHSSISYEDSLPD FSKLVESFGHVGIKITKNSELKEGIEKALSMKDKLVFVDIYVDPDEHVYPMLVAPNGS LKDMWLGKGNKT" gene 418254..418583 /locus_tag="NT01SARS_1324" CDS 418254..418583 /locus_tag="NT01SARS_1324" /note="identified by match to protein family HMM PF01842" /codon_start=1 /transl_table=11 /product="acetolactate synthase small subunit" /protein_id="EJP71514.1" /translation="MIQRQLTLIMENKPGALARVVGLFHQRGYNIDSLHVDPISDLKP YEFIEKELEIKFQENEISRLVVKTTVGDSLMRQILRQINKLIEVIAVSDDENTYLKGI LRDENLL" gene 418567..419610 /gene="ilvC" /locus_tag="NT01SARS_1325" CDS 418567..419610 /gene="ilvC" /locus_tag="NT01SARS_1325" /EC_number="1.1.1.86" /note="identified by match to protein family HMM PF01450; match to protein family HMM PF07991; match to protein family HMM TIGR00465" /codon_start=1 /transl_table=11 /product="ketol-acid reductoisomerase" /protein_id="EJP71515.1" /translation="MKIYYDNDADINIIQGINVTIIGYGSQGHAHANNLNDSGVNVTV GLREGSSSWSKAEAAGLNVKTVSESVKDADLVMILAPDEFQKSIFDKHISPNLKSDAI LGFAHGFNIHFKKIVPSEDNSVIMIAPKGPGHTVRSTYKNGGGVPSLIAIYKDNIVDK KFNAKDLALSYAMANGGTRAGVLETSFKEETETDLFGEQAVLCGGLTALIKAGYETLV EAGYSPEMAYFECLHETKLITDLIQEGGIANMHYSISNTAEFGDYKSGPKIITEDTKK AMKEILSEIQTGNFANEFLDDCRQSNDGTGGPIMKSNRKMTQNHPIEQVGKELRSKMK FLNSEKLVDKEKN" gene 424435..424550 /gene="rrf" /locus_tag="NT01SARS_1327" rRNA 424435..424550 /gene="rrf" /locus_tag="NT01SARS_1327" /product="5S ribosomal RNA" gene 424617..425213 /gene="coaE" /locus_tag="NT01SARS_1328" CDS 424617..425213 /gene="coaE" /locus_tag="NT01SARS_1328" /EC_number="2.7.1.24" /note="identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152" /codon_start=1 /transl_table=11 /product="dephospho-CoA kinase" /protein_id="EJP71516.1" /translation="MIVGLTGGIGSGKSAAAKIFVELGIDVIDADELSKNVLIENQKA KKIFVEKFGQKYINSNDEIDRELLREDIFKDEKKRKDLEGIIHPIVREEISEFVVNSK SIYKIIMVPLILETNSVDAYEKIVVVDCDLDKQIERASRRDDVSKENVENIIKNQASR EERLSIADQVIMNNASLDDLRLEVIKVHQKLLGLKIDE" gene 425206..425373 /locus_tag="NT01SARS_1329" CDS 425206..425373 /locus_tag="NT01SARS_1329" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71517.1" /translation="MSNKCPRCEKVVSRGKENQYRPFCSKRCKLIDFGTWANEENVIS RPLKSEDFYED" gene complement(425387..428098) /gene="secA" /locus_tag="NT01SARS_1330" CDS complement(425387..428098) /gene="secA" /locus_tag="NT01SARS_1330" /note="identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963" /codon_start=1 /transl_table=11 /product="preprotein translocase, SecA subunit" /protein_id="EJP71518.1" /translation="MLNFISNIFGSSNDRILKKMMVHVNAANELEEELSSKPDSFFID LKDSLQKQYQDNNQDIYSILPLAFAAVREASKRTLGLRHFDSQMLGGISLAEGNIAEM KTGEGKTLVATLPAYLNSAIGNKAVLVTVNDYLAKRDAEWMRPIYEFLGLSVGVVNSN QDIKEKTASYKCDVIYATNNELGFDYLRDNMAHSVEDRVQCSLDFAIVDEVDSILIDE ARTPLIISGPSSESSDLYQQIRKFIPKLTQQLREDSEEEPLTESERGHYLIDEKNRSV ELTDDGYLLVEGLLEDAGIIGGSDGLYSVSNLKIMKFVQATLRANFLFQKNVHYLVRN NEVLLIDEHTGRTMPGRRMSEGVHQALECKENVPIQRESQTLASTTFQNFFRLFTKLS GMTGTADTEALEFNQIYGLDVIIIPTNVPMVRTDHNDLVFLTKDAKYKALVEEIESLR KNSSPILVGTVSVESSEQVSEFLKNKNIPHQILNAKHHEKEAEIIANAGKPGMVTIAT NMAGRGTDIVLGGKRDDQTDEDWKKNNEIVLNSGGLHILGTERHESRRIDNQLRGRSG RQGDPGYSRFFLSLEDDLLRLFISDNRRALFERIGMGDDHIEHKMLSRGIENAQKRIE NRNFDARKNLLEYDDVSNDQRQAIYSLRNQLLEEDDISETIETIIVREFERITNNYIP IESIESQWKAKELEEFLSESYGLETDISNLIENDKKLLPESIADLIVSKAKHQYEEKY SALGDNKLLLEKQVMLQVLDVHWKEHLAEVDHLRGSIGLRAYAQKNPKNEFKKEAYSM FEIMLDEIDIETVRILFSIQFADEEVLENLKKEEKQDIVMEKPELKSSENDPQPEITN NTSDTIVRDEPKLGRNEIVKITNGTDTKEIKYKKAKPLIESGDWRML" gene complement(428130..429047) /gene="lpxC" /locus_tag="NT01SARS_1331" CDS complement(428130..429047) /gene="lpxC" /locus_tag="NT01SARS_1331" /EC_number="3.5.1.-" /note="identified by match to protein family HMM PF03331; match to protein family HMM TIGR00325" /codon_start=1 /transl_table=11 /product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase" /protein_id="EJP71519.1" /translation="MLKQRTLRNSIKAVGIGLHTGKNINMELIPAKANTGINFIRTDV DENLVIPAIAENVGDTSLSTALVKDDVKISTIEHLLSAIAGLGVDNCVVKVDGPEVPI MDGSSSPFVFLIQSAGLEDQDALKRFIKVKKEVTVTRDDAYATIKPFNGFKVSFKVSF DHPVHKRLPSESIIDFSSTSFVKEVCRARTFGSMSEAELLKSRNLALGASESNAIIFG EDEILNEEGLRFNDEIVKHKMLDAIGDLYLLGGNLIGEFSGYKSGHELNNKLLRKIIE DDDAYETVEFENSENAPISYVRPPFGDIE" gene complement(429063..429782) /locus_tag="NT01SARS_1332" CDS complement(429063..429782) /locus_tag="NT01SARS_1332" /note="identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, TrmH family, group 3" /protein_id="EJP71520.1" /translation="MKDDNNKRVGFHSIETIIKVNPQKIKKLFLPFNRKDKRVNNLIE LATENGIKYEISKKLKKDPEAIIKVEQANNFKDLKSYLDRNYQKNLTILIIDNIIDPR NLGSCLRSAAVLEVDAVIINKHQCAPVNQVVHDVSSGGIELLNIFYVSNLINCLKHLQ DENIKVFGLSEHADMSYQNCNFENSTAIVMGSEEFGIRQKTAEKCDLLINLSDNKNFK SFNVAVATGIILSEVVRQRKC" gene complement(429785..431242) /gene="rnr" /locus_tag="NT01SARS_1333" CDS complement(429785..431242) /gene="rnr" /locus_tag="NT01SARS_1333" /EC_number="3.1.-.-" /note="identified by match to protein family HMM PF00575; match to protein family HMM PF00773" /codon_start=1 /transl_table=11 /product="ribonuclease R" /protein_id="EJP71521.1" /translation="MSKLDKAIEQVLFENNIPNEWSSEINNELDQLKSETNSSRTDLT DKPFITIDGKDAKDFDDAVFCENKDSNIILWVAIADVAEIVAEDSKIDLEAFKRGTSI YFPKNVVPMLPEKISNNLCSLVPNEKRNVLVCKIKFHDDGEINSYEFIEAFISSQRRF TYSEVSNYDHDNEEISHSLESLKILTNKLLKKRAKRNALEIQSQDPLILIDELGEIES ISIPKRLFAHQMIEESMISANICAADFMKKNYGYGVYRVHEEPEFLKVESLKNFFSLK GLSYSKELNSLNLINAFINHANKNQESKIFNILILQSLKRAKYSTQEIGHFGLQLEKY SHFTSPIRRYPDLITHRLIKNMINSSKKTFSKELLEENLENLSDLERRAEIASRQVNQ QMICYQLEKFIGDELSTIVVGITEFGLFCEIENYFISGLIHVSDLSRDRYIYDNQANI LKGKRTGKTYRIGQKINAQLVSIVPEDRKITLVPK" gene complement(431304..433823) /locus_tag="NT01SARS_1334" CDS complement(431304..433823) /locus_tag="NT01SARS_1334" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP71522.1" /translation="MSQEVEEIIVTGAINDEVDKEIFSAKVIDKDFFDKINIVTVSEL SKYLSSSSGSRFQTNNLDGVDQGMSNINLRGLDNSSTLLLINSKRQTTAGTPSTRGQG YVDVNIIPEIAVKRIEILKESASPQYGSDAVAGVVNIFTYEEFDGFRLKTDYQSTENY DQSNTKIGMLFGKAYENGNYVVAFDFLKRKPLSAAEIEGIAELAVSGLGRSFKVSEAD VVSSGLWAGEYKKNQKIPDPDCINNGGVLTNPTTCGFQYGNRFNIVNDEDHNKIYTAL NHEFDKFLYSFKLLLSDVNINDNPQSPSYPALPFLARKINPNQGMSPFNVPVTWYGRP LGSEFESPYSPKKIDQYHFNQILKFDIGDDRLEISLSQSGHKNDHFRPDIIDSRFLLA INGNGGKNGNETWNLFDYRENSQELIDFVKGAEVSSKKSKLLSLELLYKKTISDSINL VIGASENKEDLNINYDEISRAEFTDTGALIKTADLFFLGGGKNVSSSRNNSAIFFEIL SELDNELTISSSARYEKYKNDESFDPKFSLKYRINNNLAIRTSASSSFVMPSMAQMFS SEINLGSVRDLDDSSSFVRQARIGNEELKAATAESFNIGMTYSINSLKLLFDYWQINF EDRIEIESSQVLINEDPFNPAITRNENNELIGVTTTYFNEESTDINGFDFSIEYSNYF EQFGQINYVIDLSILDEFLTPNFSKTQLINRVGKFNYDNHTFSLPKRRINTFLTWKLA KFDLNINTRYIDSYVNERSIKASAVELGYTNKINSSLMTDISIEKDLKVREGKLRINF SIANVFDKSAPKLYDAPDFSFDTRVHDPRGRIFGIGLEYNY" gene complement(433936..436179) /locus_tag="NT01SARS_1335" CDS complement(433936..436179) /locus_tag="NT01SARS_1335" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP71523.1" /translation="MKKYLNAIIVLIAFHSINVISQDDVEEIVVTSAFIDTSEINNPL YVIDGSEFSDGATTSLGDAIDEYLGVSIADYGAAVGQPIIRGMSGPRVKILKNGVVNR DVSGLGVDHLNDVDLNDISQVEIVKGPSSLLYANGTIGGIINVVDDLISSKNFELPEV AVGYESQSVNDGNSEFVNLKGNLGGFNVNFGYKNTDFGNYDVPSGAVIHSEEEHHDED EHDEDEHHDDDEHSEEDLGYINNSDFAVEATKFGVSKVTDWGYIGFGIDNLESVYGIP FHGDEHGDEHGDEDEHGDEEEHGEERIFSTTDSETFSVRGSYNVNGNLVNEIDFTYRD SDYSLTEDHAEEEHDEEEEHEDEEHEEHAPTVFMNEAVEYGATFDISNDSSTQKVVVN FVDEDNSIVGEEAFMNPANSKEFTIGYYLSKELGMFDFDFGFRLDQIERSGSVTEEEH DDDHGNEHGDEHGEVDYYNIDDSTNSFAVTLGRSLTDNLGVSLGYASVERLPSSIELF MNGPHMATGRFEVGDPNLNSETSNNFDITFNFDNGDFYAYASFYITDVDNYIALIDEE EDHMDEDEHHEDEDEHHEDEHDDHGHGNLIHANYMQEDAEFDGYEIEFGRSFDLGSGE LALSFGRDVVNAEFADGHNVPRINPARNIYSLVYTQDDLLFKLMLKDVEKQNDFGEGE TATDSYQMLNTRLTKTFNAIGNGELKVSLFANNLLDEVARNHSSFVKDEVPLPGRNYG LKFNLTF" gene complement(436226..436438) /locus_tag="NT01SARS_1336" CDS complement(436226..436438) /locus_tag="NT01SARS_1336" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71524.1" /translation="MHAFNDHHDHFDLTEEHISECQACEENVEIQLSKTKTKQHYLKN QPTTDLISRFVSYETKSNQSRAPPSN" gene complement(436485..437549) /locus_tag="NT01SARS_1337" CDS complement(436485..437549) /locus_tag="NT01SARS_1337" /note="identified by match to protein family HMM PF00107; match to protein family HMM PF08240" /codon_start=1 /transl_table=11 /product="NAD-dependent alcohol dehydrogenase" /protein_id="EJP71525.1" /translation="MKAYQIVENGKPLEEREIEKPVPSGKEILLKTVACGVCHSDVHI HEGFFSLGDDAKLPVPLMTDALAMGHEIYGEVVELGDEVEGVEIGKKYVAYPWIGCGE CRDCLHDREHYCSPLKTKNLGINVNGGYAEYVLVPESKYLFEAGDTPEEAAGSYACRG LTAYSALKKANLRENDKSVVIISAGGLGLLALKIIQAAYNINPIVVDIDDEKLKLAKA AGAAEVINAKDENIYEKIMELTDGGATSVIDYVGAGDTFELASGMFGMKRGGTYVIVG LIGGQTTVQIPMIALGARTIRGVYVGSLKEMGELMELVRSGKIDHLDFEKRDISSANE TLNDLKNGKIHGLVCLTHDH" gene 437589..438977 /locus_tag="NT01SARS_1338" CDS 437589..438977 /locus_tag="NT01SARS_1338" /note="identified by match to protein family HMM PF01979" /codon_start=1 /transl_table=11 /product="enzyme" /protein_id="EJP71526.1" /translation="MTNLVKLSVTLSLIFSINNVYADREAFESTYVPLAPEKIVIQNA SIYDGDGGEFFETDVLVEDGKIIAIGKDLPFSNEFRVIDATGKWVTPGIIDIHSHMGV YPAPGVRTSSDGNEATSPVTADVWAEHSIWVQDPQYALALTGGVTAFHILPGSANLIG GRGVTVKNLQRNTINSMKFPDAPHSLKMACGENPKRVYGNRGQAPSTRMGNAAGYRKS WIQAEGYLRRLNEYEEKSDEAKELEYAPTRDLEMETLAGVLKGEILVHNHCYRADEMA TMIDIAKEFNYKITAFHHGVEAYKIADLLADNGICGALWADWWGFKHEAYDMVQANIA IVDQARNGTGCAIVHSDDAIGIQHLNQEASKALSAGRRAGFEISEARAMKWITSNPAR AAGIYDQTGSLKVGKNADVVVWSKNPFSVYALAEKVLIDGAIAYDREKNLLPASDFDI GIMSPNKNRIEE" gene 438980..440266 /locus_tag="NT01SARS_1339" CDS 438980..440266 /locus_tag="NT01SARS_1339" /note="identified by match to protein family HMM PF01979" /codon_start=1 /transl_table=11 /product="amidohydrolase protein" /protein_id="EJP71527.1" /translation="MINMNLKFFYLILFGLLLIFVATNTNAKTIVIKNATIYDGVSDT PFKGNIQIEDDKIKRISSSNLQGDFIIDAQEKIVTPGLIATDTEIGIVEIGALSVTRD DSADMYKIGFSIYDAFNPNSTLIPWNRSNGVTTALTTPQNTSSPIGGMGSLFVLDGKL NVTGVRDAAMIGQVGGSSSGSRSEQYAIIEDLLIMASSLSKSDLSSDSDIYELIGESA ISSAMELHPRDIKALFTILNENVPLIMKSHRASDLLKLIEIKERFNLNMIIMGAQEAH LVKSELAEAGIPLIINPINNIPDSFDELASNIQMASRLEEAGIPIMFNVSRSHNYHLI RQGAGVAVANGMSYGGAIKSLTSIPAETFGMSDRGTLEAGKIADLVIWDEDPLEPSAM PEYVFIGGENMDLTSRATRLTDRYTKDLDEPVIYRD" gene complement(440344..440475) /locus_tag="NT01SARS_1340" CDS complement(440344..440475) /locus_tag="NT01SARS_1340" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71528.1" /translation="MTIEEKTKQEKDEILKKDFKFGQLVYAALYGILLISLIVMAYS" gene complement(440495..440571) /locus_tag="NT01SARS_1341" tRNA complement(440495..440571) /locus_tag="NT01SARS_1341" /product="tRNA-Thr" gene 440710..441441 /locus_tag="NT01SARS_1342" CDS 440710..441441 /locus_tag="NT01SARS_1342" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71529.1" /translation="MKKIILSSFLIASFGLLADDHLPPGYSKYQSNFLFTCSMPAKCL KAFNDYMNAPEIASQNFEADMYAVMHNGWDEATHGISFYYKSADEYAKGNQIYVTSEA GRKFRKRIDELDIQGTSQNLTVHTVGVTNSGSAAENVVSLRWSLDVSNPAKFLPLWKG FSKSIEKYDWSANAYGLQSHYLGNNGRITHEVWAAFKTVQEALAFLDGMYASSEFAEY NPKADEYSDFIRSYMEVSLSQFNPD" gene complement(441481..442035) /gene="msrA" /locus_tag="NT01SARS_1343" CDS complement(441481..442035) /gene="msrA" /locus_tag="NT01SARS_1343" /note="identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401" /codon_start=1 /transl_table=11 /product="peptide-methionine (S)-S-oxide reductase" /protein_id="EJP71530.1" /translation="MQHYVKNLPLDQNFSKATNEIVVGAGCFWGVEKKFWDLPGVLMT SVGYSGGETDNPTYEDVCYKNTNHVEVVKITYDEEITSLKEILKIFWECHDPTQGMRQ GNDVGTQYRSAIYCSNEDDLIAAEESKKSYQKTLSKNSYPEITTEISLIKNYYFAEEY HQQYLAKNPLGYCGIGGTGCKFEE" gene complement(442036..442779) /locus_tag="NT01SARS_1344" CDS complement(442036..442779) /locus_tag="NT01SARS_1344" /EC_number="6.3.4.15" /note="identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121" /codon_start=1 /transl_table=11 /product="biotin-(acetyl-CoA-carboxylase) ligase" /protein_id="EJP71531.1" /translation="MKQLKKDIILANVPKNRINLDIFEEIDSTNEFLKKNIQSNEFNL VASEKQTNGKGRRGKKWHSPKKGNIYMSISTKNTFKSGPLSLITGIICTKVLSNISQT EEIGLKWPNDLVFNNKKIGGILVEKDIYANEEKTIIGIGINFNINGEENWWGDISELK IEDQRNVIIAKITSEIIKAYDKDHFDWVNQWENLCIHLNKEVKINNHDSTTEDGVFIG IEDDGSALIKTESGMKSFKSSEISIKGVY" gene 442835..442920 /locus_tag="NT01SARS_1345" tRNA 442835..442920 /locus_tag="NT01SARS_1345" /product="tRNA-Tyr" gene 443037..443113 /locus_tag="NT01SARS_1346" tRNA 443037..443113 /locus_tag="NT01SARS_1346" /product="tRNA-Thr" gene 443141..>443796 /locus_tag="NT01SARS_1347" CDS 443141..>443796 /locus_tag="NT01SARS_1347" /note="identified by match to protein family HMM PF00009; match to protein family HMM TIGR00231" /codon_start=1 /transl_table=11 /product="translation elongation factor Tu" /protein_id="EJP71532.1" /translation="MAREKFERTLPHVNVGTVGHVDHGKTTLTAALTKVAAEVFGGDA VDFANIDNAPEERERGITIATSHVEYVSTARHYAHVDCPGHADYVKNMITGAAQMDGA ILVVSAADGPMPQTREHILLARQVGVPYIVVYMNKADQNDDPEMIELVEMEIRELLNE YEFPGDDTPIIVGSALKALEGDTSDIGVPSVQKLIETLDSYVPEPERPVDGDFLMPIE " CONTIG join(AHBG01000025.1:1..78273,gap(20),AHBG01000026.1:1..3815, gap(20),AHBG01000027.1:1..2210,gap(359),AHBG01000028.1:1..1487, gap(20),AHBG01000029.1:1..45316,gap(20),AHBG01000030.1:1..5381, gap(20),AHBG01000031.1:1..7524,gap(20),AHBG01000032.1:1..13288, gap(20),AHBG01000033.1:1..2023,gap(20),AHBG01000034.1:1..44234, gap(20),AHBG01000035.1:1..11377,gap(20),AHBG01000036.1:1..18434, gap(20),AHBG01000037.1:1..1025,gap(20),AHBG01000038.1:1..3568, gap(20),AHBG01000039.1:1..3277,gap(20),AHBG01000040.1:1..84902, gap(20),AHBG01000041.1:1..117003) //