LOCUS JH611156 806593 bp DNA linear CON 18-MAR-2015 DEFINITION MAG: SAR86 cluster bacterium SAR86A genomic scaffold Contig_0, whole genome shotgun sequence. ACCESSION JH611156 AHBG01000000 VERSION JH611156.1 DBLINK BioProject: PRJNA76773 BioSample: SAMN02954345 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG. SOURCE SAR86 cluster bacterium SAR86A (marine metagenome) ORGANISM SAR86 cluster bacterium SAR86A Bacteria; Pseudomonadota; Gammaproteobacteria; SAR86 cluster. REFERENCE 1 (bases 1 to 806593) AUTHORS Dupont,C.L., Rusch,D.B., Yooseph,S., Lombardo,M.J., Richter,R.A., Valas,R., Novotny,M., Yee-Greenbaum,J., Selengut,J.D., Haft,D.H., Halpern,A.L., Lasken,R.S., Nealson,K., Friedman,R. and Venter,J.C. TITLE Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage JOURNAL ISME J 6 (6), 1186-1199 (2012) PUBMED 22170421 REFERENCE 2 (bases 1 to 806593) AUTHORS Dupont,C., Rusch,D., Yooseph,S., Lombardo,M., Richter,R., Valas,R., Novotny,M., Yee-Greenbaum,J., Selengut,J., Selengut,J., Haft,D., Halpern,A., Lasken,R., Nelson,K., Friedman,R. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (24-FEB-2012) J. Craig Venter Institute, 10355 Science Center Drive, San Diego, CA 92121, USA COMMENT This WGS project has the genome of uncultured SAR86 cluster bacterium SAR86A assembled from seawater from 55 GOS stations collected during the Global Ocean Sampling Expedition. ##Genome-Assembly-Data-START## Assembly Method :: Celera Assembler v. 5.2 Assembly Name :: SAR86A_1.0 Sequencing Technology :: Sanger; 454 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..806593 /organism="SAR86 cluster bacterium SAR86A" /mol_type="genomic DNA" /submitter_seqid="Contig_0" /isolation_source="seawater from 55 GOS stations collected during the Global Ocean Sampling Expedition" /db_xref="taxon:1123866" /environmental_sample /metagenome_source="marine metagenome" /note="genome assembled from metagenomic dataset" gene 150..1067 /gene="tuf" /locus_tag="NT01SARS_0001" CDS 150..1067 /gene="tuf" /locus_tag="NT01SARS_0001" /note="identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00485" /codon_start=1 /transl_table=11 /product="translation elongation factor Tu" /protein_id="EJP71533.1" /translation="MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVYM NKADQNDDPEMIELVEMEIRELLNEYEFPGDDTPIIVGSALKALEGDTSDIGVPSVQK LIETLDSYVPEPERPVDGDFLMPIEDVFTISGRGTVVTGRIETGIVNTGDPLEIVGIK ETSETTCTGVEMFRKSLDEGRAGENCGILLRGVERDAVERGQVLAKPKSISPHTKFEA EIYVLSKDEGGRHTPFMNNYRPQFYFRTTDVTGACELPEGTEMVMPGDNIKMVVSLIA PIAMDEGLKFAIREGGRTVGAGVVSKIVE" gene 1136..1213 /locus_tag="NT01SARS_0002" tRNA 1136..1213 /locus_tag="NT01SARS_0002" /product="tRNA-Trp" gene 1214..1603 /locus_tag="NT01SARS_0003" CDS 1214..1603 /locus_tag="NT01SARS_0003" /note="identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964" /codon_start=1 /transl_table=11 /product="preprotein translocase, SecE subunit" /protein_id="EJP71534.1" /translation="MERTGRVMNMNKESTSKALDNLKWLLAIIVFGIAVVGNSYFVEV AFLYRVLAVLALFIVGLVLIALTSFGSNALKLMKESRTEIRKVVWPTRMETTQTFMIV FGAIIILCLFFWGLESLLTFLTRLVLG" gene 1605..2132 /gene="nusG" /locus_tag="NT01SARS_0004" CDS 1605..2132 /gene="nusG" /locus_tag="NT01SARS_0004" /note="identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922" /codon_start=1 /transl_table=11 /product="transcription termination/antitermination factor NusG" /protein_id="EJP71535.1" /translation="MDWYVIQAYSGYEQKVKAALEERISLNNLTEKFGEILIPTEQIV ELKGGAKKTTERKFFPGYILIQMNLEDDSWQLVQSTPRVSGFVGGTRDKPLPISEEDV NNIINRIEVGEDAPAPKTIYEPGEVIRVCDGPFNDFNGVVENVDYERNMVKVSVQILG RATPVELDFMQIEKT" gene 2132..2560 /gene="rplK" /locus_tag="NT01SARS_0005" CDS 2132..2560 /gene="rplK" /locus_tag="NT01SARS_0005" /note="identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632" /codon_start=1 /transl_table=11 /product="ribosomal protein L11" /protein_id="EJP71536.1" /translation="MAKKVVNVLKLQIPAGGANPSPPVGPALGQVGLNIMDFCNAFNS ATQESEKGMPLPVVINVYEDKSFDFVVKTPPAAVLIRKALNIQKGSGEPNREKVGKLT RAQLEDIAKAKEPDLNANDIDAAVKIIAGTARSMGVEVDL" gene 2557..3249 /gene="rplA" /locus_tag="NT01SARS_0006" CDS 2557..3249 /gene="rplA" /locus_tag="NT01SARS_0006" /note="identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169" /codon_start=1 /transl_table=11 /product="ribosomal protein L1" /protein_id="EJP71537.1" /translation="MSKLTKKQKILQEKLDPEKVYSIDEAMEIMQSVKSDKFDESVDI SIKLGVDPNKSDQNVRGAVTLPNSLGKDVRVAVFADGDNAKDAESAGAEYVGMEDLAE KFTKEEIEVDVVISTNGAMKVVGKLGQVLGPKGLMPNPKTGTVSDDVASAIKNVKAGQ VRFRTDKNGIIHGSIGKVTFDSTKIKANASALLEELKKLKPASAKGVYINNIALSSTM GPGIKINSGELV" gene 3409..3939 /locus_tag="NT01SARS_0007" CDS 3409..3939 /locus_tag="NT01SARS_0007" /note="identified by match to protein family HMM PF00466" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L10" /protein_id="EJP71538.1" /translation="MALSKDEKVNIVRDVKEVASNASSLVISDARGLKVSELSEIRTK ANESGIHIQVIKNSLAKLAFEGTDFGCSDEVLTGPSLFAFSFEEPGAAAKLLKTYAKN FDELEIKALVVEGQLLDGSQIDILAKLPSKEEAYSLIANVLQAPVSKFATLLNEVPSK LARVLSAVRDQKEASA" gene 3957..4337 /gene="rplL" /locus_tag="NT01SARS_0008" CDS 3957..4337 /gene="rplL" /locus_tag="NT01SARS_0008" /note="identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855" /codon_start=1 /transl_table=11 /product="ribosomal protein L7/L12" /protein_id="EJP71539.1" /translation="MATNKDDILKAIEEMSVMDLVDLISAIEEKFGVTAAAAVAAAPA AAGGDDAPAAEEKDEFDVVLSAAGDQKVQVIKAVRAITGLGLKEAKDMVDGAPSTLKE GVKKEEAEGMLAQLTEAGATGELK" gene 4370..8434 /gene="rpoB" /locus_tag="NT01SARS_0009" CDS 4370..8434 /gene="rpoB" /locus_tag="NT01SARS_0009" /EC_number="2.7.7.6" /note="identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, beta subunit" /protein_id="EJP71540.1" /translation="MSYSYTEKKRIRKNFGTFAQVMDLPNLIETQTNSYAEFLQADVA PDSRKKQGLEEVFQSLFPITSVSGNAALEYVSYELGKNTYDVQECLIQGLSYSAPLRI KVKLVLFDRDSNFKEVKDIKEGEVFMGEVPLMTDDASFIINGTERVVVSQLHRSPGVF YDHDKGKTHSSGKVLYSARIIPYRGSWLDFEFDPKDILFSRIDRRRKIPATIMLRALD MGTEEILSEFYEEDSYTLDKDSVKVALVPERLRGETLSVDIKVKSKVYVEAGKRITAR HIKELTNSKASEITLSDEFLIGKVLSKDIFDSETGEVLLAANTEISEEILEILKENKI SEIKCLYINELDKGPYISNTLRVDPTSNRLEALVEIYRMMRPGEPPTKDSAETLFSNL FFNEERYDLSEVGRMKFNRRLKLDSKKDNPHILDKQDIIEVMKGIVNIRDGHDIVDDI DHLGNRRVRSVGEMTANQFRVGLIRVERAVRERLSMAEADELGPQDLINAKPVTAAIK EFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPI ETPEGPNIGLINSFASYSRTNQYGFIETPYRKVVNGKVTDEIVYLSAIDEAEHVIAQA NVMLDKNNRFVDDLVAVRHANEFELMSPDRIDLMDVSPQQVVSIAASLIPFLEHDDAN RALMGSNMQRQAVPVLRAEKPLVGTGLETVVARDSGVCIVAKNSGVVESVDASRIVVR VTDKKSKTASDVYNLIKYTRSNQNTCINQRPIVKSGDVVKAGDILADGPSIDNGELAL GQNIRIAFMPWNGYNFEDSILISEKVAREDRFTSIHIQEIVCIARDTKLGSEEITADI PNVGEGSLNKLDDCGIVYVGAEVEPGDILVGKITPKGETQLSPEEKLLRAIFGEKASD VKDTSQRSSSKGTVIGVEVFTRDGVEKDERTQAIEQDHIDQSKKDADDEASVVEQATK TRMIDLLKSKKAIKGNGVKKGETLASEKLETFSINDIFSIRTDTEATNKVVEETEVLY KQYIKDIKSRYEEKKEKIIRGHDLAPGVIKIVKVYLAIKRRIQPGDKMAGRHGNKGVI SEIMPVEDMPYDNDGNPIDIVLNPLGVPSRMNVGQILETHMGSAAKGIGMKIDTMLKE NAKPAELKSYLDKLYNNNAANKEDINSFNNSEILELAENLRDGLPIATPVFDGAKESE IKDLLKLADLPESGQITLYDGRTGTEFDRPVTVGYMYMIKLNHLVDDKMHARSTGSYS LVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVSGRTKMYKNIVD GSYEMDANVPESFNVLSKEIKSLGINIELDLDNQ" gene 8444..14353 /gene="rpoC" /locus_tag="NT01SARS_0010" CDS 8444..14353 /gene="rpoC" /locus_tag="NT01SARS_0010" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, beta' subunit" /protein_id="EJP71541.1" /translation="MKDLLNALKTGQEDFTTISAGLASPQVIRSWSFGEVKKPETINY RTFKPERDGLFCAKIFGPVKDYECICGKYKRMKHRGVVCEKCGVEVTLAKVRRERMGH IDLAAPVAHIWFLKSLPSRIGLLLNVTLREIERVLYFESYIVTDPGLTELEKGQILTE EEWVEKYEEFGDEFSAGMGAEAVQILLEELDIEDEIRIIREEIPQTNSETKLKKLSKR LKLLEAFKDSGNKPEWMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNR LKRLLELNAPEIIVRNEKRMLQESVDALLDNGRRGRVITGTNKRPLKSLADMIKGKGG RFRQNLLGKRVDYSGRSVIVAGPNLKLHQCGLPKKMALELFKPFVYGKLENRELATTI KAAKKLVERETPEVWEVLEEVIREHPVLLNRAPTLHRLGLXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGQILTEEEWVE KYEEFGDEFSAGMGAEAVQILLEELDIEDEIRIIREEIPQTNSETKLKKLSKRLKLLE AFKDSGNKPEWMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLL ELNAPEIIVRNEKRMLQESVDALLDNGRRGRVITGTNKRPLKSLADMIKGKGGRFRQN LLGKRVDYSGRSVIVAGPNLKLHQCGLPKKMALELFKPFVYGKLENRELATTIKAAKK LVERETPEVWEVLEEVIREHPVLLNRAPTLHRLGLQAFEPKLIEGKAIQLHPLVCVAF NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPADGSPIINPTQDVVLGLYYMTR DNANAKGGGRVFSNPDEVLRAYETENLEIHSPVKVRIKDAAGETSLQETTVGRTLIWR ITPAEVGFENINNVLNKKLVSKLVDISYRKAGLKKTVIFADQLMYLGFDFSTRSGSSI GVNDFVIPQEKAKIIDSSEKEVKAIEKQFDSGLVTRGERYNKVIDIWSRANEQVAKAM MEKISTETAKTPEGDNVDQSSFNSVYIYADSGARGSPAQIRQLSGMRGLMSKPDGSII ETPITANFREGLSVLQYFISTHGARKGLADTALKTANSGYLTRRLCDVSMDSVINIDD CGTKDSITVTSIIDGGEIIQALTDRILGRVIAEPILDADGKEIFPVNTMLDEDALNVI EELNLSSLKIRSPMTCDASIGVCANCYGRDLARGHLVHRGEAVGVVAAQSIGEPGTQL TMRTFHIGGAASSSSEDNAIYNKNNGVVNFSDDIKSVTNKDKLEVVVSRNAACTITDS TGKIIEQYKLPYGATLQVKDLSEVDEGTQIASWDPYTRPIISETAGKVKFTDIEDGLS VREQMDVLTGLTSIEIIEVADRPSAGRDLVPTIEIVDSKGKPVLVGEFKQPAVYPLPA GGLVNLANGQKITAGEVIARMPLVASKTKDITGGLPRVADLFEARKPKDAAVLAEESG VISFGKETKGKVRLVITPEGATKKTQNVEMLIPKHRTLNVFEGERVNKGDVISEGPLS PHDILRLKGIPELTNFIVNEIQDVYRLQGVSINDKHIETILRQMLRKALVLDGGDTKF IQGDQVSYAELKEENQKAEADGKTPADFERVLLGITKASLATDSFISAASFQETTRVL TEAAVTGKKDHLRGLKENVVVGRLIPAGTGMEFHDKLRSKKQSDYDEQLLSDDDIEAA LRQELQENDEE" assembly_gap 9742..10626 /estimated_length=885 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 14408..14779 /gene="rpsL" /locus_tag="NT01SARS_0011" CDS 14408..14779 /gene="rpsL" /locus_tag="NT01SARS_0011" /note="identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981" /codon_start=1 /transl_table=11 /product="ribosomal protein S12" /protein_id="EJP71542.1" /translation="MATVNQLIKKSRKPKVKKTDVPALNACPQRRGVCTRVYTTTPKK PNSALRKVCRVRLTSGYEVTSYIGGEGHNLQEHSLVLIRGGRVKDLPGVRYHTIRGTL DTSGVASRKQRRSKYGAKKGK" gene 14782..15252 /gene="rpsG" /locus_tag="NT01SARS_0012" CDS 14782..15252 /gene="rpsG" /locus_tag="NT01SARS_0012" /note="identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029" /codon_start=1 /transl_table=11 /product="ribosomal protein S7" /protein_id="EJP71543.1" /translation="MPRRRSPEKRKVLPDPKYKDVVLAKFMNNLMKDGKKSVAEKIVY GAFDQITKSTKDDPLEVFMKALEEVSPVVEVKSRRVGGANYQVPVEIRPSRRQALAMR WIVDAARNRSEKSMDLRLAGELQDASQKKGSAFRKREDVHKMAEANKAFSHFRF" gene 15273..17375 /gene="fusA" /locus_tag="NT01SARS_0013" CDS 15273..17375 /gene="fusA" /locus_tag="NT01SARS_0013" /note="identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484" /codon_start=1 /transl_table=11 /product="translation elongation factor G" /protein_id="EJP71544.1" /translation="MARDTVLNKYRNVGICAHVDAGKTTTTERVLFYTGLSHKIGEVH DGAAVMDWMEQEQERGITITSAATTCFWSGMEQQYPQHRINIIDTPGHVDFTIEVERS LRVLDGAVVVFCGTSGVEPQSETVWRQANRYEVPRIVFVNKMDRAGANFEKVVEQIKD RLQANVVPIQLNIGAEDDFKGVVDLIKMRAIYWNEDDQGLTFDSQDIPENLLDKCNKL REEMVEAAAEANEELMDAYLESGELSEEQIKEGLRIRSLSNEIILALCGSAFKNKGVQ AVLDAVIDFLPAPDEVKAIEGVIPNNSEEEEQSDSRKSSDEEPFSALAFKIATDPFVG TLTFIRVYSGVLSVGDGVMNTTKSKKERVGRMVQMHSNNREEIKEVRAGDIAACIGLK DITTGDTLSDSDKPIVLERMDFPEPVISVAVEPKSKQDQEKMSLALGKLAQEDPSFRV ASDEESGQTIISGMGELHLDVLVDRMKREFSVEANIGKPQVAYRETIKESVEIEGKFV RQSGGKGQYGHVWLKLEPLGLDDEYEFVDKIVGGVIPKEYIPAVNKGIQEQMQNGVIA GYPLLALRATLYDGSFHDVDSNEMAFKIAGSMALKEGATKAKPALLEPIMKVVVVTPE EHMGDVVGDLNRRRGIILGMEDITSGKEVSSEVPLAEMFGYATDLRSQTQGRATFTME FTKYGEVPNNIAEQLKTS" gene 17498..17812 /gene="rpsJ" /locus_tag="NT01SARS_0014" CDS 17498..17812 /gene="rpsJ" /locus_tag="NT01SARS_0014" /note="identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049" /codon_start=1 /transl_table=11 /product="ribosomal protein S10" /protein_id="EJP71545.1" /translation="MENQSIRIRLKAFDYRLIDASAKLIVETVKKTGAVINGPIPLPV KKERTTVLISPHKDKDARDQYEIVTYKRLMDIVKPTDKTVDALMKLDLSSGVDVQISL GQ" gene 17870..18505 /gene="rplC" /locus_tag="NT01SARS_0015" CDS 17870..18505 /gene="rplC" /locus_tag="NT01SARS_0015" /note="identified by match to protein family HMM PF00297; match to protein family HMM TIGR03625" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L3" /protein_id="EJP71546.1" /translation="MSIGLIGKKSGMSRLFLEDGESVPVTAVSVCGNFIADIKTKEKN GYNALVVSKTEKSNNLNKSQKEFFKKVNLEPGSLAEFRLDDNNDSSFEIGSHLTADLF EVGQYVDVTGTSKGKGYAGVIKRHNFKMQDATHGNSLAHRAHGSIGQCQTPGRVWKGK KMSGHMGDVQKTVQSLKIVHMDVENNVIYIKGSVPGFNGSQLKIKPSIKAS" gene 18502..19116 /gene="rplD" /locus_tag="NT01SARS_0016" CDS 18502..19116 /gene="rplD" /locus_tag="NT01SARS_0016" /note="identified by match to protein family HMM PF00573" /codon_start=1 /transl_table=11 /product="ribosomal protein, L4/L1 family" /protein_id="EJP71547.1" /translation="MKIELLSNTKNKDISISNDVFSKEFNESLIHQAVVSFMAASRQG SAKQKNRSEVRGGGKKPYRQKGTGRARAGTIRSPLWRGGGVTFAARPRDYSKKLNKKM YRAAIKSIFSELVRQNRLVAIEKPVLEKPKTKEIASFLNEFSLSKVLIIIDELDMNLY LSARNIPNVDVITVREINPVNLLKPQKVAVTSEALKQIEEWING" gene 19109..19405 /gene="rplW" /locus_tag="NT01SARS_0017" CDS 19109..19405 /gene="rplW" /locus_tag="NT01SARS_0017" /note="identified by match to protein family HMM PF00276" /codon_start=1 /transl_table=11 /product="ribosomal protein L23" /protein_id="EJP71548.1" /translation="MVKEKLYTLIKSPIITEQTAQLGENLKQVVFKVDLSANKLEIKK AVEELFKVEVVNVTTSIVKGKQKRNRFGIYKKPNYKKAFVSISKDSDIQFEGMN" gene 19405..20229 /gene="rplB" /locus_tag="NT01SARS_0018" CDS 19405..20229 /gene="rplB" /locus_tag="NT01SARS_0018" /note="identified by match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171" /codon_start=1 /transl_table=11 /product="ribosomal protein L2" /protein_id="EJP71549.1" /translation="MAIIKSKPTSPGRRGQISIKSDLYKGKPLKSLIEPKSKKGGRNN NGRITVRHQGGGHKQHYRVIDFKRNKFDIPAVVERIEYDPNRSAHIALLKYKDGERRY IIAPSKIKIGDELVSSDNCEIKPGNSMKLKDIPLGTNVHCVELKPMKGAQLARSAGTS ARLVAKEGIYATLRLQSGETRKVLWECRATLGTVSNQENNLRSLGKAGAKRWRGVRPT VRGVAMNPVDHPHGGGEGRTSGGRHPSTPWGKPTKGYKTRKNQRTDDLIIRRRGKK" gene 20231..20503 /gene="rpsS" /locus_tag="NT01SARS_0019" CDS 20231..20503 /gene="rpsS" /locus_tag="NT01SARS_0019" /note="identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050" /codon_start=1 /transl_table=11 /product="ribosomal protein S19" /protein_id="EJP71550.1" /translation="MPRSLKKGPFVDLSLSKKVEAAIANNDKKPIKTWSRRSMIIPSM VGLTISVHNGRQHVPVFINEDMVGHKLGEFAITRTFKMHSGDRKAK" gene 20503..20841 /gene="rplV" /locus_tag="NT01SARS_0020" CDS 20503..20841 /gene="rplV" /locus_tag="NT01SARS_0020" /note="identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044" /codon_start=1 /transl_table=11 /product="ribosomal protein L22" /protein_id="EJP71551.1" /translation="METRAYLKGTRLSPQKAALVADQIRGKSVDQAMDFLVFNKQKGS AVIKKLLESAIANAENNNNADIDKLSISSIIVNQGMRLKRMKPRARGRADRIIKPTCH IEIILKEEDK" gene 20841..21500 /gene="rpsC" /locus_tag="NT01SARS_0021" CDS 20841..21500 /gene="rpsC" /locus_tag="NT01SARS_0021" /note="identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009" /codon_start=1 /transl_table=11 /product="ribosomal protein S3" /protein_id="EJP71552.1" /translation="MGQKVNPNGFRLGVSKKQNANWYAKGKDFSNNLIQDLKVREYLG KKLKNSSISKVELERTAESFIVNIHTARPGIIIGKRGEEIENLKKAVEKIVKGPSQIN IKEVKKPDLDAQILAEGVAQQLEKRVMFRRAMKRTVQSALRQSAKGVRIEVSGRLNGA EIARTEWYREGRVPLHTLRADIDYGTAEALTTYGIIGVKVWVYRGEITEDPYKTEQGV S" gene 21503..21913 /gene="rplP" /locus_tag="NT01SARS_0022" CDS 21503..21913 /gene="rplP" /locus_tag="NT01SARS_0022" /note="identified by match to protein family HMM PF00252; match to protein family HMM TIGR01164" /codon_start=1 /transl_table=11 /product="ribosomal protein L16" /protein_id="EJP71553.1" /translation="MLQPKQTKFRKMHKGRNRGLAQNGNTIAFGRFGLVASDRGRITA RQIEAARRAMTRYIKRGGNIWIRIFPDKPITKKPLEVRMGKGKGNVEYWVALVQPGKI MFEMAGVEEELAREAFRLASAKLPIKTHFIKKDL" gene 21915..22121 /gene="rpmC" /locus_tag="NT01SARS_0023" CDS 21915..22121 /gene="rpmC" /locus_tag="NT01SARS_0023" /note="identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012" /codon_start=1 /transl_table=11 /product="ribosomal protein L29" /protein_id="EJP71554.1" /translation="MSKELAELRKKNMQQLDAELISVRESQFGLRIKHKTGQLNETSE LMKMRKKIAQIKTVMNEIKTKGGE" gene 22121..22384 /gene="rpsQ" /locus_tag="NT01SARS_0024" CDS 22121..22384 /gene="rpsQ" /locus_tag="NT01SARS_0024" /note="identified by match to protein family HMM PF00366; match to protein family HMM TIGR03635" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S17" /protein_id="EJP71555.1" /translation="MDSTNPRVLTGIVTSDKADKTITVKVERKVKHPLYGKVIKRATK VHAHDETNSASIGDVVSVKECRPISKSKTWILVNEDEKNGEEN" gene 22387..22755 /gene="rplN" /locus_tag="NT01SARS_0025" CDS 22387..22755 /gene="rplN" /locus_tag="NT01SARS_0025" /note="identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067" /codon_start=1 /transl_table=11 /product="ribosomal protein L14" /protein_id="EJP71556.1" /translation="MIQMQSLLNIADNSGARSVMCIKVLGGSKRRYANIGDIIKVAVR EAIPTGKVKKGQVVDALIVRTKKGVRRRDGSLIKFDENAAVLVNAQKAPIGTRVFGPV TRELREGKHMKILSLAPEVL" gene 22758..23093 /gene="rplX" /locus_tag="NT01SARS_0026" CDS 22758..23093 /gene="rplX" /locus_tag="NT01SARS_0026" /note="identified by match to protein family HMM TIGR01079" /codon_start=1 /transl_table=11 /product="ribosomal protein L24" /protein_id="EJP71557.1" /translation="MNKRLTPTKLRSGDEVIVIAGKDIGKKGTLREIYKNKNKGIVTG INIVKKHTRPNPEMGITGGVVEQEAAIALSNLAIWNPKKKTKDKIAYSTDKDGRKIRL FKSDGVEIK" gene 23094..23633 /locus_tag="NT01SARS_0027" CDS 23094..23633 /locus_tag="NT01SARS_0027" /note="identified by match to protein family HMM PF00281; match to protein family HMM PF00673" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L5" /protein_id="EJP71558.1" /translation="MANLKEKYTQELRPALQEELGINNVMAVPKLTKIVINMGVGEAA NDKKHLESALDNLTVIAGQKPIVTKARKSVASFKIREGWPLGCKVTLRGNKMYDFMER LIKIAIPRERDFRGLNPKSFDQQGNYSFGIKEQIIFPEINYDNIDNIRGMDICINTST ENTEHAKALLKAFDFPFKQ" gene 23643..23948 /locus_tag="NT01SARS_0028" CDS 23643..23948 /locus_tag="NT01SARS_0028" /note="identified by match to protein family HMM PF00253" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S14" /protein_id="EJP71559.1" /translation="MAKKSMIAREVKRIKTVAKYAGKRAALKAQMNDQSLSTEERYEA RVKFQKLPRNASPSRVVRRCQVTGRPHAVYRKFGLSRIKLREAAMRGDIPGLVKSSW" gene 23956..24351 /gene="rpsH" /locus_tag="NT01SARS_0029" CDS 23956..24351 /gene="rpsH" /locus_tag="NT01SARS_0029" /note="identified by match to protein family HMM PF00410" /codon_start=1 /transl_table=11 /product="ribosomal protein S8" /protein_id="EJP71560.1" /translation="MSFQDPISDCLTRIRNGLMRGKTHVQVPYSKLKHDLVDVLVSEG YLKSCSKTELDDKPVIEVELKYHNSEPVIKELKRISKPSLRKYSAASSLESVKGGLGS FILSTNQGLMTDRDAKAKNVGGEILCEVF" gene 24351..24899 /gene="rplF" /locus_tag="NT01SARS_0030" CDS 24351..24899 /gene="rplF" /locus_tag="NT01SARS_0030" /note="identified by match to protein family HMM PF00347; match to protein family HMM TIGR03654" /codon_start=1 /transl_table=11 /product="ribosomal protein L6" /protein_id="EJP71561.1" /translation="MSRVAKNPIKIVDGVNVTVEGNLVTVKGSKGELEFEMTESISLN IAEDTITVGYDENIQQSIALAGTTRSIVNNMIIGVSEGFEKKLELIGVGYRAKASGKL LELTLGFSHPIKYQLPPEVEVETPSQTEVVLKSHNKQILGQAAAEIRAFRPPEPYKGK GVRYADEQVKRKEAKKAAGAGA" gene 24902..25249 /gene="rplR" /locus_tag="NT01SARS_0031" CDS 24902..25249 /gene="rplR" /locus_tag="NT01SARS_0031" /note="identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060" /codon_start=1 /transl_table=11 /product="ribosomal protein L18" /protein_id="EJP71562.1" /translation="MSEKNISRIRRAKKSRIHIRDQESPRLTVFRSSKHFYAQIFDSL GAKVIVSASTVEKDLKIDANNVAGAKEVGKRVAERALENGIKKVVFDRSGYKYHGRIK ALADSARDAGLEF" gene 25253..25762 /gene="rpsE" /locus_tag="NT01SARS_0032" CDS 25253..25762 /gene="rpsE" /locus_tag="NT01SARS_0032" /note="identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021" /codon_start=1 /transl_table=11 /product="ribosomal protein S5" /protein_id="EJP71563.1" /translation="MKEENTMTNQQVDALEEKLVQVNRVAKVVKGGRIFGFTALTVVG DGNGRVGFGRGKAKEVPIAIQKAMENARRSMVEVELNNTTLWYPIKAKHGSANVYMQP ASEGTGIIAGGAMRAVLELAGVQNVLAKCYGSTNPVNVVRATINALSSMESPETVASR RGKKVEEIS" gene 25813..25947 /locus_tag="NT01SARS_0033" CDS 25813..25947 /locus_tag="NT01SARS_0033" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71564.1" /translation="MKNHKLCIKGLGIKKLNQTVTVLDTPSNRGMINKISDMLEIIEN " gene 25949..26452 /gene="rplO" /locus_tag="NT01SARS_0034" CDS 25949..26452 /gene="rplO" /locus_tag="NT01SARS_0034" /note="identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071" /codon_start=1 /transl_table=11 /product="ribosomal protein L15" /protein_id="EJP71565.1" /translation="MSEEATNNMNLNTLSNTGTAQNRKRVGRGIGSGTGKTAGRGHKG QKSRSGGNVRLGFEGGQMPLQMRLPKFGFTSRVNNSFKEVNVKNLEGMKVVSLQTLKD NKLIAKSVKKVKIFGNTEIESKITVEGIPLTKGAKASIEKAGGKIVAASTKNDKPKTQ SKKEDSE" gene 26455..27756 /gene="secY" /locus_tag="NT01SARS_0035" CDS 26455..27756 /gene="secY" /locus_tag="NT01SARS_0035" /note="identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967" /codon_start=1 /transl_table=11 /product="preprotein translocase, SecY subunit" /protein_id="EJP71566.1" /translation="MVDQGNNMSDLWKRLRFVFIAILVYRIGTHIPIPGIDPDRLAAL FEQNQGTIIEMFNLFSGGALERMSIFALNVVPYISSAIIMQLFSNSIPYLQELKKDGQ AGRNAITQYTRYGTAVLAFIQASALAVTLSASGLAYVPGPSFFVSAVFSVVAGTMFLM WLGEQVSERGIGNGISIIIATSILTGIPGAIGQALEQSRQGDLSILLLIGIGLLSMAV IAVVVFIERGQRRITVNYAQRQQGRRMMQAQTSHLPFKVNMAGVIPAIFASTFLLFPA SLSTWFGENESLSFLQSFSLALNPGQPLYILVFAGLIISFCFIWLALTFNTKDVSDNL KRSGAYIAGIRPGEQTANYIDSVLARLTVFGAIYLTLICLLPLALINFAGISPTISVG GTSVLIIVVVLMDFMAQVQSHMMSSQYASLMKKANIKNYRR" gene 27878..28234 /gene="rpsM" /locus_tag="NT01SARS_0036" CDS 27878..28234 /gene="rpsM" /locus_tag="NT01SARS_0036" /note="identified by match to protein family HMM PF00416; match to protein family HMM TIGR03631" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S13" /protein_id="EJP71567.1" /translation="MARIAGVNIPENKHVEISLTHIFGIGRKTAQNICLDLKIDYTRK ISDLSEDEIESIRNAVSTYVVEGDLRRNISTNIKRLQDLASYRGIRHRRKLPTRGQNT KNNARTRKGPKKPMRG" gene 28237..28614 /gene="rpsK" /locus_tag="NT01SARS_0037" CDS 28237..28614 /gene="rpsK" /locus_tag="NT01SARS_0037" /note="identified by match to protein family HMM PF00411; match to protein family HMM TIGR03632" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S11" /protein_id="EJP71568.1" /translation="MAAKGKKNKKVVTDGVAHIHSSFNNTIVTITDKQGNTICWATSG GSGFKGSRKSTPFAAQIAADKAGNAAKEFGMINLDVKVKGPGGGRESAIRSLNACGLK IKSITDVTPLPHNGCRPSKKRRV" gene 28626..29246 /gene="rpsD" /locus_tag="NT01SARS_0038" CDS 28626..29246 /gene="rpsD" /locus_tag="NT01SARS_0038" /note="identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017" /codon_start=1 /transl_table=11 /product="ribosomal protein S4" /protein_id="EJP71569.1" /translation="MARYRGPSLRLSRREGTDLYLKSGVRAIESKCNMDTQPGVHGAR RGRLSDYGLQLREKQKVRRMYGVLEKQFRNYYKKAASSKGNTGENLLSLLEKRLDNVV YRMGFGSTRAEARQMVSHKAFMVNGKVVNIPSYQVQAGDEIEVRESKKGHLRIAAALK IASTREDCDWLEVDEQNLKGVFKSVPDRTDLSTEINENLIVELYSK" gene 29266..30231 /gene="rpoA" /locus_tag="NT01SARS_0039" CDS 29266..30231 /gene="rpoA" /locus_tag="NT01SARS_0039" /EC_number="2.7.7.6" /note="identified by match to protein family HMM PF01000; match to protein family HMM PF01193; match to protein family HMM PF03118; match to protein family HMM TIGR02027" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase, alpha subunit" /protein_id="EJP71570.1" /translation="MQTSVIDLLVPTEIQVDDVSPTLSKVTLEPLERGFGHTLGNALR RILLSSMPGAAVTDVAIEGISHEYSTIEGIREDVIDILLNIKDMPINLIEGDSAEVTL DVTGPCDVLASSFDAPGNVELVDQDFHVATIVDKVSLKMTLTVKTGRGYEPADLRDDE DRVVGALKVDASYSPVRRVSYTVDNARFGKRTDLDKLVVELETDGTLDPKMAIEHSAT ILQQQLSAFVDLDAIAEQEAKKDQNDFDPILLRSIEELELTVRSTNCLKAESIFLIGD LIHRSEFDLLKTPNLGKKSLNEIKDVLASKELSLGMNVENWPPVG" gene 30235..30645 /gene="rplQ" /locus_tag="NT01SARS_0041" CDS 30235..30645 /gene="rplQ" /locus_tag="NT01SARS_0041" /note="identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059" /codon_start=1 /transl_table=11 /product="ribosomal protein L17" /protein_id="EJP71571.1" /translation="MRHRKSGRKLNRNSAHRKALFKNLAIALIEQEIIKTTLPKAKEL RKFIEPLITRAKDDSVANRRHAFNKLRSDSAVAKLFSEVAVNSKDRNGGYTRIIKAGF RAGDKADMAYIELVDRVLDSDDLDQTNPEEESAA" gene complement(30642..33461) /gene="uvrA" /locus_tag="NT01SARS_0040" CDS complement(30642..33461) /gene="uvrA" /locus_tag="NT01SARS_0040" /EC_number="3.1.25.-" /note="identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630" /codon_start=1 /transl_table=11 /product="excinuclease ABC, A subunit" /protein_id="EJP71572.1" /translation="MDSIYIKGARTHNLKNISLEIPRNKIIVITGLSGSGKSSLAFDT LYAEGQRRYVESLSTYARRFLSMMEKPDVDQIEGLSPAISIEQKATSHNPRSTVGTVT EVYDYLRLLFSRIGTPVCPDHGEELKAKTVSEICDEILKIKENTKIMLLAPVVRGKKG EHLGIYEELRKSGYVRVKVNGTVYPMEEFPDLDKNKKHDIAAVIDRLVIKKSDDIRSR ISESIETSLLLSEGLIEVENMDKNEITLYSSNFSCSQCGYAVPELEPRMFSFNNPYGA CTKCDGLGVIQFFNEKRLIQDDEVSIANGAIKGWTRRNRFYYYQLRCLANHYDFTLTT KWKDYPQKIKDIILWGTKEKIDFSHRFRSGSRIVRKHRFEGIIPSTERRFKETDSEYI RNELAKLMSESSCDECSGSRLNNYSRNVFINKTQIHKITSMRINDSLKFIKGMNLTGA KKKIAEKILKEIVDRLTFLEDVGLNYLTLDRSAETLSGGEAQRIRLASQIGSGLVGVT YVLDEPSIGLHQRDNAKLIKTLKNLKELGNTVIVVEHDEEAIRSADHIIDIGPGAGVH GGKICAQGDIKAILKNKDSITAKYLSGKREIKVPKKRAKVNSKKITIINAHENNLSNV NIDIPVGLFTCVTGVSGSGKSSLINQTLLPISSFLLNKAKLSKEVKCEKIEGLDHLDK VINIDQSPIGRTPRSNPATYTGLFSHIRDLLSQTVEARSRGYKPGRFSFNVKGGRCEA CQGDGMIKVEMHFLADVYVKCDICDGNRYNDQTLEVKFKEKNISDILNMTVEDALEFF DAHPSIKNKLITLNDVGLGYITLGQSALTLSGGEAQRIKLAKELSKRSTGKTLFILDE PTTGLHFADIELLLNVLNRLKDQGNTVVVIEHNLDVIKTADWIIDLGPEGGSDGGRIV AEGTPEEVSKVKESFTGKFLKPILS" gene 33530..33967 /locus_tag="NT01SARS_0042" CDS 33530..33967 /locus_tag="NT01SARS_0042" /note="identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621" /codon_start=1 /transl_table=11 /product="single-strand binding family protein" /protein_id="EJP71573.1" /translation="MSRGVNKVILVGNLGQKPEMRYTATQTAVANLSIATTESWKDKE SGENRDKTEWHRVVFFGNLAEIAEKYLDKGSSVYVEGKIQTRKWQDKDGNDRWTTEVL GNQLTMLGSRGSSDSSMQDNSSSDTPFPEDDSGPGLTDDDIPF" gene 33976..34851 /gene="paaG" /locus_tag="NT01SARS_0043" CDS 33976..34851 /gene="paaG" /locus_tag="NT01SARS_0043" /note="identified by match to protein family HMM PF00378" /codon_start=1 /transl_table=11 /product="putative enoyl-CoA hydratase PaaG" /protein_id="EJP71574.1" /translation="MIKEYKTITLQEIDSIAVLKLNRPEKLNAFNMQMLEDIMDAFDE VDRNDNLKAIILSGAGRAFCAGADLSAGDKTFDKNFDTRGEFEEDFRRDAGGILVLRI YNSLKPVIAACNGDAVGVGATMQLPADIRIAKKSARYGFVFARRGIVPDGCASWFLPK LVGISKSLELCYSGDLISAEEGSKIGLINYLIDDEENIIDVAIELAKKMTENSSQVSV AMTRHMLWSYSSEIDPEEAHIMESKLIDSRGVSDDAKEGVMSFLEKRKPKFSNKVSED LPNFFPWRKSKFKDN" gene 34854..35933 /locus_tag="NT01SARS_0045" CDS 34854..35933 /locus_tag="NT01SARS_0045" /note="identified by match to protein family HMM PF00724" /codon_start=1 /transl_table=11 /product="oxidoreductase, FMN-binding protein" /protein_id="EJP71575.1" /translation="MLFEPFKLKNCEMRNRIVMAPMTRNQSPGGIPTEEVAKYYERRA KGEVGLIITEGIELSHKSSSAYPNVPRLDSEEARDGWKKVISGIKENNGSVIAQLWHC GGFRKLGMGPDPDVPGYTASGLVKPGKKVAHEMTADDVKEAIEAYASDAEICENLGFD GVEIHGAHGYLIDNFFWEGTNIREDIYGGSIEKRSNFVKEIVEAIRSRVTNNFIVGLR FSQWKQHDFDAKLAQTPDELEKVIMPPVNAGLDYLHSSMRRFWESEFPDSKENLAYWT KKISDITTIGVGSVGLDSDFIDMMAPANPTSIDKAIEDISSNKYELIAVGRALISDPN WVIKMKEGRFDELIPYTKESLLTLY" gene complement(35930..37138) /gene="fabF" /locus_tag="NT01SARS_0044" CDS complement(35930..37138) /gene="fabF" /locus_tag="NT01SARS_0044" /note="identified by match to protein family HMM PF00109; match to protein family HMM PF02801" /codon_start=1 /transl_table=11 /product="beta-ketoacyl-acyl-carrier-protein synthase II" /protein_id="EJP71576.1" /translation="MKKVVVTGLGIKSCIGNTYDEVLLSLKNGSSGISFNDVYSEMGF RSCVSGSININLADYIDRKLLRFMGESAGYSYLATKDALDMAGINEEDLDSPRIGIVA GSGGSSTRIMVENGDIARDRGPKRIGPYGVTRSMSSSISAIISTAFKLKGINYSISSA CATSAHCIGHAADLIKSGQQDIVIAGGSDDEHWSSSCLFDAMGALSSNFNSSPETASR PYDVNRDGFVIAGGAGMVILEDEEHAKKRGANILAKISGYYANSDGYDMVAPSGEGAA RCMKGAMKDAGLEIDYINTHGTSTPVGDVAELKAINEVFSSNSPAISSTKSMTGHSLG ATGAHEAIYSIMMINNGFIAPTINVDELCDEAKDLDIVTETRDCEISNVLSNSFGFGG TNASLVLSKF" gene complement(37138..37662) /gene="fabA" /locus_tag="NT01SARS_0046" CDS complement(37138..37662) /gene="fabA" /locus_tag="NT01SARS_0046" /EC_number="4.2.1.-" /note="identified by match to protein family HMM PF07977; match to protein family HMM TIGR01749" /codon_start=1 /transl_table=11 /product="beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA" /protein_id="EJP71577.1" /translation="MTFIPQNSYSKDDLIACANGELFTKPGDGRLPSDQMLMFDEISN IDDSSGTYKKGSISAHLNINPDLWFFKCHFKTDPVMPGCLGLDAMWQLLGFYLLWSGL PGIGRALGADNVKFFGQVLPNAKEVTYKIDIKRIINRGAIVGLADGEMFVDDRKIYTA EKLKVGLFKDPSNF" gene complement(37659..38597) /locus_tag="NT01SARS_0047" CDS complement(37659..38597) /locus_tag="NT01SARS_0047" /note="identified by match to protein family HMM PF00348" /codon_start=1 /transl_table=11 /product="octaprenyl-diphosphate synthase" /protein_id="EJP71578.1" /translation="MNLIEKELYHVEKMIKADVVKEKSIKEIYKYIFKSDGKKIRARL NLISSSINRKKKNRIKLAAIIELLHTATLVHDDVVDDSSFRRGNESVNNIWSNAHGVL IGDYIYSKAFIYMVDVGKKEILKELASATNDISQGELVQLDAINNQEITLTKLKRISY FKTGRLFEAAARTGALLAETKPIYIKNISECAKNIGILFQIKDDLLDYSLSNDIGKPV FQDLKEGKVTYPFFFAYKNADKNTKKTLSNNLGNKKANTKDILRLIQAHDGISKTEDL AKKFHKNAIISAKKIDNLKIQKEMIELAQLAYEREK" gene 38697..39014 /gene="rplU" /locus_tag="NT01SARS_0048" CDS 38697..39014 /gene="rplU" /locus_tag="NT01SARS_0048" /note="identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061" /codon_start=1 /transl_table=11 /product="ribosomal protein L21" /protein_id="EJP71579.1" /translation="MYAVIETGGKQHKVEKGMVLSVDLLKDDVGKKITFENVLLYVDG DKVEVGQPYLDNVKVTAEVKDVVKSEKISILRFRRRKHSMRKVGHRAKHTQIEIKSIK LES" gene 39016..39273 /gene="rpmA" /locus_tag="NT01SARS_0049" CDS 39016..39273 /gene="rpmA" /locus_tag="NT01SARS_0049" /note="identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062" /codon_start=1 /transl_table=11 /product="ribosomal protein L27" /protein_id="EJP71580.1" /translation="MAHKKAGGSSKNGRDSNSKRLGVKRFGGEIVKAGEILIRQRGTN THPGLNVGIGKDDTLFAKSAGMVQFTYKGPKKRKTANVIPQ" gene 39283..40284 /gene="cgtA" /locus_tag="NT01SARS_0051" CDS 39283..40284 /gene="cgtA" /locus_tag="NT01SARS_0051" /note="identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR02729" /codon_start=1 /transl_table=11 /product="Obg family GTPase CgtA" /protein_id="EJP71581.1" /translation="MNFIDEAYLEVRAGDGGSGASSFRREKYIPFGGPDGGDGGKGGN ILFKVNQNTNTLIDFQNKKIFEAKNGQKGSGKNKSGADGDDLVIHVPKGTVIYDNLTN EELMDCTDENLEYLIVKGGEGGHGNARFKSATNRAPRKSTPGFKGEVRSLRLELKSLA DVGLVGFPNAGKSTFLNHVSSAKPKIGNYPFTTLRPHLGTIKGNESSYVIADIPGLIE GASDGAGLGIKFLKHISRTGLLLIFVDLFSSENLSPLDQINSLQKELEAYKDDLTQKI SWIVCNKVDLLKDEDVKKIEKEIQSALNTKDVFMISAFTGKGTRELLNKLETEVCKS" gene complement(40281..40544) /gene="rpsT" /locus_tag="NT01SARS_0050" CDS complement(40281..40544) /gene="rpsT" /locus_tag="NT01SARS_0050" /note="identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029" /codon_start=1 /transl_table=11 /product="ribosomal protein S20" /protein_id="EJP71582.1" /translation="MANSKQAIKRAKQNAETYKLRHAQRSMVRTAVKAVRASIDANDA EKAKDLLKSAEKILDSSASKKVIHKNAAARTKSRLSKAIKNLS" gene complement(40659..43295) /locus_tag="NT01SARS_0052" CDS complement(40659..43295) /locus_tag="NT01SARS_0052" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP71583.1" /translation="MKNSKNLLVRYLSIFLIFGSINIIAQDNDEAIEEVVVTGSYIKG SPTDGASPVEIISRDTIDALSASTVADITANLSINSGSENNVDSFTSGATQGTGNVNL RGLGLTSTLVLLDGKRHTLAGINANDGSVFVNTNIIPVNAIERVEVLKEGAASVYGSD AVAGVVNYIFRRDFEGIEVDVSTQETDLGGQTDDKVSVIFGTPLGNGNLVVAVSSLDR SPLLGTEFNPSLVPLGISGFGTSFLAFGGGTVESGPYAGTYSFLENIPDPNCIANKGI LLPQASGQRCGFFFGDRFNLVNDEDHLNTYTSFKTELSTGATFSIDYLNSSIDVNDNF QSPSYPALSYASTANLVMPGTGGSPFSFPVMYIGRALGSAFDSPPAPRYLESQRLSLG LSKTLDNGFDMDVSYTYSSEDNSGIQPDTSTSRFGNAIKGTGGAPGMWNLFVPTANSQ ELIDYISTAQETYIDISLSVMDVVLSGTINDIEVATGLQWRKEKHDVKRNDDSITGFD SNGSLSVLPDLIFLGGGVESSDSRSAFAIFAEAAKQATDKVELRGAIRYESLRSDSTI NPKVSMRIQANDNLVLRASVSTSFREPSLYQLNQSSVGLQGIQDFDTSGSPVGNPSFI RITQAHDANLMPEESKNMNLGAVWTPNDQTSVKFDYWSVDYRDVITIESAQGKVIADP NGPDVLRLVDGTLIGVTTRYKNVGKVNADGYDIEASYIFNTGLGNVVLGMNRAHFLSY EIPASGGGMKDVVGLFNHDNFARSLPETKTVLSASLISGNHTVGAFYRMISDYETTNP PNALGVANGLGQEIDEFNVLDLKYSYNFDMDDSSLRLSLGVKNATDEEVPMFYDASNF SYDTRQHDPRGKMVYVGLKYSM" gene complement(43810..44274) /gene="smpB" /locus_tag="NT01SARS_0055" CDS complement(43810..44274) /gene="smpB" /locus_tag="NT01SARS_0055" /note="identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086" /codon_start=1 /transl_table=11 /product="SsrA-binding protein" /protein_id="EJP71584.1" /translation="MATEKPALIVKNKNASRNFKLNESFEAGIALKGWEVKSLRNKKV DVKNSYVNIKKNEAWLIGIKIDCPPSLQNEDVDLLRTRKLLLHKKEILKIQKLKGEKG LTCVLTKLYWKNNNVKCEIALGVGKKQRDQREDIKKRDWQRDQARILKNKNK" gene 44322..44783 /locus_tag="NT01SARS_0056" CDS 44322..44783 /locus_tag="NT01SARS_0056" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71585.1" /translation="MNITSIKSTYGYIGFIPFAILSLAPWVLGGEIAKISIQFQLAYG SIIITFLGGFAWGWPDDQKNQALNLSYGIGFSLLGCSMLLLTYFGFIMTALILAIISF YLFYLFEKSTVIFDTKDDDYQKFRKILTLLVCISFLISSGYWINPYSSPYL" gene 44793..46142 /locus_tag="NT01SARS_0057" CDS 44793..46142 /locus_tag="NT01SARS_0057" /note="identified by match to protein family HMM PF00209" /codon_start=1 /transl_table=11 /product="sodium:neurotransmitter symporter family protein" /protein_id="EJP71586.1" /translation="MQKTLKKHGTWIGKWTFVLAATGSAVGLGNIWGFPYKAGTEGGA AFVLIYLLCIVAIGVPIMISEILIGRRSGNSPINAMKKSAIDSGASSLWQLVGWTGII AGVLILSFYSVIAGICLNYIFIAASPNELITSSEQFGQVISSPTNLLIWHTVFMFLTL LIVSAGVEDGIGRMVKILMPLLGFLLLFMVIYGAINGAFLEALSFLFAPDFSNVGTDT FLSAMGQAFFSMSLGMGSIMAYGAYMPKEQEIVSTSFSVGSLDTLVAILAGLAIFPII FAFNLEPGSGPGLVFVSLLSAFNQMEFGQLIGPIFFILLSIAALSSSISILEPGVAYL AEEEFLTRKQSAIVISILCWVIGIGTATGFNIFSVVDSSGESINPFLNTMELISVQIL QPLGGMLIAIFIGWFMNESLIKNEIPQINPFLYSLWRFFIKYVAPLSVAFIFISQII" gene 46108..46566 /locus_tag="NT01SARS_0059" CDS 46108..46566 /locus_tag="NT01SARS_0059" /note="identified by match to protein family HMM PF03364" /codon_start=1 /transl_table=11 /product="polyketide cyclase/dehydrase family protein" /protein_id="EJP71587.1" /translation="MLPLFSYLKSSEVLRKLKVSKLIPHNKEKVYKEIADFENYVNFI PGCSKAKLIEKGDGFEIGVLEFDFLLRKYEIKSKNILSNYQIDIEQIEGPFETFNGCW KVNAKADDVTEATLSAEFELPFLLDNLLPENLINSFGEAAIQGFLKNIKD" gene complement(46563..46898) /locus_tag="NT01SARS_0058" CDS complement(46563..46898) /locus_tag="NT01SARS_0058" /note="identified by match to protein family HMM PF04355" /codon_start=1 /transl_table=11 /product="SmpA/OmlA" /protein_id="EJP71588.1" /translation="MKNKFSNIFYIFIATFLINSCSALSPYKVPILQGNIFEEEDIEK LSEGLSRDQVKFIFGTALIQDPFHSNRWDYYYSIQVGDEKINENKLSIFFSDEGLVDS WTIEEIDLN" gene 46997..47407 /locus_tag="NT01SARS_0060" CDS 46997..47407 /locus_tag="NT01SARS_0060" /note="identified by match to protein family HMM PF01475" /codon_start=1 /transl_table=11 /product="ferric uptake regulation protein" /protein_id="EJP71589.1" /translation="MNDQNKELKKAGLKATLPRIKIMEVLASTAIQEEAHFSAEDIYK ELLNNGENIGLASVYRVLTQFESAGMVKKHHFEGSHAVYEVVEENHEHMVDVETGKVL EFQDAELIERLNNIAKDAGYQLVDHNLVLHVKKL" gene 47478..48044 /gene="grpE" /locus_tag="NT01SARS_0061" CDS 47478..48044 /gene="grpE" /locus_tag="NT01SARS_0061" /note="identified by match to protein family HMM PF01025" /codon_start=1 /transl_table=11 /product="co-chaperone GrpE" /protein_id="EJP71590.1" /translation="MTKKVKKTKKNGIADENSVDEKVEVVAEESESMDGENLGTPSYE ELLDKKEDLEQALIRANADLDNAIKRTISEVEKAHKYGVEKLLNELLPVIDNLEHALS NLSDNASDEDKEGIELTLKSFESTLDKFGMIPIYPVNEEFNPEKHEAVSMEKDKNKKD GEIGNIFQRGWELHSRVIRPARVTVIKN" gene 48054..49970 /gene="dnaK" /locus_tag="NT01SARS_0062" CDS 48054..49970 /gene="dnaK" /locus_tag="NT01SARS_0062" /note="identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350" /codon_start=1 /transl_table=11 /product="chaperone protein DnaK" /protein_id="EJP71591.1" /translation="MSKIIGIDLGTTNSCVAVVEGQQHKVIENAEGGRTTPSVIAYTE NDEVLVGLPAKRQAVTNPENTLYAIKRLIGRTFDDEVVSKDADMVPYKIIKADNGDAW VEASNKKLAPPQVAAEVLKKMKKTAEDYLGHEVKEAVITVPAYFNDSQRQATKDAGKI AGLDVKRIINEPTAAALAYGLDKNKGDATVAVYDLGGGTFDISIIEISDVDGEHQFEV LSTNGDTFLGGEDFDLRLIDYFVDKFKEESGFDLKSDPLALQRLKEAAEKAKIELSSS EQTEVNLPYITADSSGPKHFVHKITRAKLEALVEDLVDKSLEPLKLALKDAKISKGDI NEILLVGGQTRMPLVQKKVAEFFGKEARKDLNPDEAVAVGAAIQGSVLSGDTTDVLLL DVTPLTLGIETLGGVATPLIEKNTTIPTQKSQVFSTAEDNQTAVTVHVIQGERTQAAQ NKSLGQFNLTDIPPAARGVPQIEVSFDLDANGILNVSAKDKNTGKEQSIVIKASSGLS DEDIEKMVKDAEANAEDDKKFEELVKTKNNADMLVHATRKTIEDSGDALNDDEKGQVE DAIKSLEEAIAAENVDEIESATKNLNDVLTPLTQKLYKQENQGEQDAAQPETSDTDEN TVDAEFEEVKEDEK" gene 49980..51080 /gene="dnaJ" /locus_tag="NT01SARS_0063" CDS 49980..51080 /gene="dnaJ" /locus_tag="NT01SARS_0063" /note="identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349" /codon_start=1 /transl_table=11 /product="chaperone protein DnaJ" /protein_id="EJP71592.1" /translation="MSKRDYYEILGVSRDSSAAELKKAFKKKAMKYHPDRNPDNPEAA AKFKEAAEAYDVLSDSQKKSAYDQFGHSGVEGMGGGPNFNDININDIFGDIFGDVFGT RSQSRRQRRGSDLQYNLELSLKEAVLGVQKKIKIPSHSECAECNGSGAEKGTSPTVCP NCNGSGQVRMQQGFFSVQQTCSTCSGNGQIIKNICRTCRGQGALKDNKTLSVNIPAGV DNGDKVRLSGEGEWMKGGQRGDLYVAIRVSESPLFERDGRHLYIEAPIPFDISVIGGS IQIPTLENSISLKIPSNTQTGKVFRIKGKGASIVRDRRRGDILCRVVVETPSNLSKQQ LEMLNKFKDSLNNDKNYPGSSTFSKAISKIKE" gene 51083..51727 /locus_tag="NT01SARS_0064" CDS 51083..51727 /locus_tag="NT01SARS_0064" /note="identified by match to protein family HMM PF01113; match to protein family HMM PF05173" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate reductase" /protein_id="EJP71593.1" /translation="MLKIFINGLSGKMGQSVSKIANDKNYIISNAIESCDIVIDFSHP NNLSEMLKSSIKFKKPIIIGTTGFSKQQFKTIEKAAQEIPIMYSSNFSDGVLNLKKTI ESFINNSSEIFSCEIEETHHTEKIDFPSGTAIDLRNFIMSVDKENIVKSIKITSFRKE NVYGDHKVSFYNKENFRNFKHEALSRDIFAKGALKRAESVFHAKPGLYDLSSFK" gene 51865..52755 /gene="rpsB" /locus_tag="NT01SARS_0065" CDS 51865..52755 /gene="rpsB" /locus_tag="NT01SARS_0065" /note="identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011" /codon_start=1 /transl_table=11 /product="ribosomal protein S2" /protein_id="EJP71594.1" /translation="MSIVSIKDLLQAGVHFGHQQRFWNPKMEQFIFDTRKQISIINLD LTQEHLSAAASKVEDICSKGNKILFVGTKRSASKTIKEEASSIGLPYVDKRWLGGTLT NWKTIRGSIRRLLDIEEMISSGRIEKLIKKEAVEIQKEYTKLQASVGGIKDMKGLPDA IFVIDVKYEKIAVLEAQKMGIPIIALVDTNSDPDGIDVIIPGNDDAIRSIRLITKVIA DACSRGIESSKGFAPKSDSPVIQTVKKEKESEEDSKEEVTTNSAEQENPDVLIDESAE EDEVVAEAEDQNSEEENKED" gene 52758..53615 /gene="tsf" /locus_tag="NT01SARS_0066" CDS 52758..53615 /gene="tsf" /locus_tag="NT01SARS_0066" /note="identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116" /codon_start=1 /transl_table=11 /product="translation elongation factor Ts" /protein_id="EJP71595.1" /translation="MEIKASQVKELRDMTGVAMMDCKKALVECDGDIEKALDLLRSNS ALKAEKKSSRVAADGILSTVIAENYATIIEINSETDFAAKDTNFLSFVDKVSAYISKN KVTNVDSLKDSELEDARKSLVQTIGENIQIRRVITSDFDNEMNVGLYLHSDSKLASAV VINGGNNDVAKDIAMHVAAFNPLCLSKDDLDQEILNRERAIYENQAKDSGKPKEIMDK MVDGKVNRFLSEVSLLSQSFVKDPDMTVEEYLSNENASVISFTRLKVGEDIVIESKDF AEEVAEQLK" gene 53619..54332 /gene="pyrH" /locus_tag="NT01SARS_0067" CDS 53619..54332 /gene="pyrH" /locus_tag="NT01SARS_0067" /EC_number="2.7.4.22" /note="identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075" /codon_start=1 /transl_table=11 /product="UMP kinase" /protein_id="EJP71596.1" /translation="MPETEHKRILLKFSGESVAGNDEHGIDPKILDQMADSVKSCRDL GTEIGIVIGGGNLFRGEKLNKAGMDRVAGDHMGMLATVMNGIALRDALERAGIKTRVM SAISMSGIVEHYDRRLAIQLLSDGFVVIFTAGTGNPFFTTDTAGCLRAIETQSDLMLK ATRVDGVYDSDPEINRDAKLFDELTFDEAITKNLKVMDATALTLARDHKLPIKVFNVN QPDALKNIICGKKIGTLIS" gene 54335..54889 /gene="frr" /locus_tag="NT01SARS_0068" CDS 54335..54889 /gene="frr" /locus_tag="NT01SARS_0068" /note="identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496" /codon_start=1 /transl_table=11 /product="ribosome recycling factor" /protein_id="EJP71597.1" /translation="MDTILIEVSEKMDKSLSALRNAFNKIRTGRANPSILDDVKVDYY GNMTPINQTSNITIEEGRSLVISPWDKSLLPEIEKAILNSDLGLNPNSSSDLIRVTMP ALTEETRQNYIKQARSEAENSRVSIRNIRRDANQTVKDKQQASEISEDELRRIEDLIQ KETDKYISIVDSELKNKESDLLEI" gene 54898..55617 /gene="uppS" /locus_tag="NT01SARS_0069" CDS 54898..55617 /gene="uppS" /locus_tag="NT01SARS_0069" /EC_number="2.5.1.31" /note="identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055" /codon_start=1 /transl_table=11 /product="di-trans,poly-cis-decaprenylcistransferase" /protein_id="EJP71598.1" /translation="MAIKNQNANLKNVAIIMDGNGRWARKNSLKISQGHKKGVQIVRE IVEESILQNIDSLTIYAFSSENWQRPKSEINAIKKLVVDAINDQVPELKEQKVKLKFF GHTEDFGEKVIKKIKYAESETFCEDYKLNLNVALSYGGKQDILDLVKKISKEVFDKKL NIDDIDESKIHESSCAPVNEIDLLIRTGGDKRISNFLLYQIAYAEIMFIDKFWPEFSK EDFKECVSNFQKVSRRFGKRV" gene 55601..56248 /gene="cdsA" /locus_tag="NT01SARS_0070" CDS 55601..56248 /gene="cdsA" /locus_tag="NT01SARS_0070" /EC_number="2.7.7.41" /note="identified by match to protein family HMM PF01148" /codon_start=1 /transl_table=11 /product="phosphatidate cytidylyltransferase" /protein_id="EJP71599.1" /translation="MVNEYKQNLIKRIFTSFAIMMPIVFVIYYQNLIFFSLLISVVCL GAFYEWIKNNLDNKVLGLFVILNFGICSIIFIVLQDGKIISPYLLYLLIILNTAIFDT FAYIVGSNFGKTQIAKKTSPKKSYEGLFGGILFSGLYSYLICLIFNIDFLVIIYFIIG SIFALIGDLFISHYKRKIGIKDTGSILPGHGGILDRIDSHLLATPVKVILVSQIL" gene 56245..57390 /gene="dxr" /locus_tag="NT01SARS_0071" CDS 56245..57390 /gene="dxr" /locus_tag="NT01SARS_0071" /EC_number="1.1.1.267" /note="identified by match to protein family HMM PF02670; match to protein family HMM PF08436; match to protein family HMM TIGR00243" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" /protein_id="EJP71600.1" /translation="MNILLLGATGSIGDSVLSVIKENHSELNLFGITFHKNKNKSQEI IKDFKPEFAYVEDRSTFEDLKDTSDITFLNGDSSLKELIEHDDVDVIISAISGFAGLK ATYLAASTGKKILLANKESIVAGGDLITARAKKFNSKIIPIDSEHNAIFQCLSGQRSP DDVQNITITASGGPFIGKKISDLKDVTKDDALNHPNWDMGSKISIDSATLVNKCLELI EAKYLFDLEESIFDLVIHPQSIVHSVVTYKDGSSICQMSMPDMRVPIAHALSNEHRLP INFEKINFNDLNLSFHAFPEDRLQIQKIAREVCNSGGHLGTIFNAANEVAVESFLNDQ ISFDKIYEVIHRTFDNNSMSKDVSIESIYEADTQTRIKAKKVVKSIT" gene 57404..58759 /gene="rseP" /locus_tag="NT01SARS_0072" CDS 57404..58759 /gene="rseP" /locus_tag="NT01SARS_0072" /EC_number="3.4.24.-" /note="identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054" /codon_start=1 /transl_table=11 /product="RIP metalloprotease RseP" /protein_id="EJP71601.1" /translation="MSFFIYILAFLVLLGALVTIHEFGHFIVARMCKVHVQRFSIGMG PVFYKRNDKHGTEFALSAIPLGGYVSMITNKLIELEPEVRDQLTEEQIQNTFDSKPKW QRASIMFAGPLANFILSIFIFTLIFLNTPDPQSVPVISNLNQDVKNYTSTSSFEIADQ ILEINDVVVKDAKDVNLELLSYAGYTGPLNIKIHRELSEEPFDIEIFVEDFLPTSESQ NEPLDYLGIGIDYKMQPYIGGVINGGAAEKGMLQANDKIISIADKEVRYAEDIRYIVS NNPNANLVFKVERGAEMLYLPITIGSVTRDGQESGVLGVSFGTTRSLLQSLNKGVYET YNLSIKTLQFIGKMLSGNMGTENLSGPIGIAQMAGNTAQAGFLPFMYLMALLSISLAV INLLPIPVLDGGQLTLLGVEAIRGKPLPEKAENMIYTGGAAIVVMLMIFAVFNDISRF F" gene 58768..61188 /gene="yaeT" /locus_tag="NT01SARS_0073" CDS 58768..61188 /gene="yaeT" /locus_tag="NT01SARS_0073" /note="identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly complex, YaeT protein" /protein_id="EJP71602.1" /translation="MKRLKIIFLSLLISLHINAFDEFLVSDIRIVGLQRVSTGSIFNV IPISVGDRIDQRKSNDIVRSLFATEQFDNIQIGKEGNTLIITVEERPSISAIELSGNK ALKTEQLLESLDGVGIKEGEVYKRSTLEKVKSELVRSYSANGRYGATVEIEEINKPRN RIEIDIEVDEGKSAKIEKINIIGNEIFTTEEILRGFELSEGSFFSFLSNDDQYSREKL KGDIETLESYYRDRGYLKFSIESSQISLSRDKREIYITFNVNEGQKYTIKDVEVVGEI PFEEEIYINITDSLKEQTYSQATITGIEEFFTNVLGNRGYAFAEVKGNPEVEDESNEV KLTFTIEPGKRTYTRKILFTGNEITQDHVLRREMRQFEGAWSSDNSIEAGKVRLERLG YFKEVSVETVPVPGTDDQIDVLYSVEEETTGSLGGNIGYSDFGLMLGFNLQEQNFLGS GNTVGIGINKSIYNEVYNISFLDPYATKDAVSLGYNIYFRETDYGEFNIANYLTNSAG FGAQFGYPISDTQRLSFNLTYDKTDIDIGSLPAREIYDFVAAEGNVFETLSAGVSWQT VTLNRGLFPTDGASTSLSLSTTVPGSDLSYYRINLRQRYYQPLSSDLIFGFQGELGYL SAYGETEETPFFQNFYAGGPRSLRGFESNTLGPRSTDAPCYEFNYEEGTCPNLLDTDG DGELDSPYYNPYANNTSRYRDAPIGGNIKVEGSLQMIFRLPFIEDQRSMRSAFFFDFG NVFSDNCKDYQINCYKPSIDDLRYSYGVGITWITGFGPMSFAISKPTNAGPQERTEEF QFTVGNVF" gene 61225..61761 /locus_tag="NT01SARS_0074" CDS 61225..61761 /locus_tag="NT01SARS_0074" /note="identified by match to protein family HMM PF03938" /codon_start=1 /transl_table=11 /product="putative outer membrane chaperone Skp" /protein_id="EJP71603.1" /translation="MKNITKIYLIAFLFAAVPLMAMDGVAVIDMRTAVLSTQAAADAF KALEEDPDYSSNLEEAQSLQAERQAIAEKLQKELETLSQEEIAQMQKEIQDKGKDLEF LAGKIQQAQEETAQEVFASSGPAMQKIIGELIAAKQIKVLMAKNETLLFSDPALDLTD DVTSMLDVAAAEANSTSE" gene 61761..62696 /gene="lpxD" /locus_tag="NT01SARS_0075" CDS 61761..62696 /gene="lpxD" /locus_tag="NT01SARS_0075" /EC_number="2.3.1.-" /note="identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853" /codon_start=1 /transl_table=11 /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" /protein_id="EJP71604.1" /translation="MSKSISFNLGELQEILNATLKGDPSCVVDNIATISNSNDSSISF VTDNKYKKYSKESKAAALIVSKDFTLESDQNYLICEDPYLAYAKISNLFCEDEINFPT IHPSAVISEEANIDKNVYIGPNVYIGPRCNIGSNVIINANCSIVKNVTISENSIIHHG SVLGSDGFGFAPTKNGYVKIEQLGGLVIGKNVEIGANCTIDRGAIDNTEIHDGVIFDN QVHIAHNVVVGKNSAIAASCAIAGSTKIGENFQMGGLSGVLGHLEICKDVKVGAHTLI TKSISESGEYIGIMPAQHHKDWAKSSIFIKNKGKK" gene 62693..63136 /locus_tag="NT01SARS_0076" CDS 62693..63136 /locus_tag="NT01SARS_0076" /note="identified by match to protein family HMM PF07977" /codon_start=1 /transl_table=11 /product="beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ" /protein_id="EJP71605.1" /translation="MILNQDDIKKYLPHREPFLFIDEVVEIDENETIHARKLIKPDEY FLQGHFPGNPIFPGVIIIEALGQASGILGFTIMNKTPEEGSIYVLAGVDKVRFRKRVR PGDTIDLFSKVVNEKRGIWKFDCRAEHNNEIVCSATILCADRKAL" gene 63133..63912 /gene="lpxA" /locus_tag="NT01SARS_0077" CDS 63133..63912 /gene="lpxA" /locus_tag="NT01SARS_0077" /EC_number="2.3.1.129" /note="identified by match to protein family HMM PF00132; match to protein family HMM TIGR01852" /codon_start=1 /transl_table=11 /product="acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase" /protein_id="EJP71606.1" /translation="MSIHPTSIIDPSAKIAKDVQIGPFCTIGEDVQIESGSKIISHAV IKGPTVIGKDNCIYQFSTIGDDTPDKKFKGEKTKLIIGDNNIFREGVTVHRGTVQDNS VTTIGSNNLFMPFAHVAHDCIVGNDNIFANLAALAGHVHVGNNVTIGGITTVHQHCKL GDFCFAGMNSSITMDVPAYVKVASDPARVIGINSVGMSRKNISDDSISNIKKAYKLVY RKNLKIEEALLELSSLFEQTQDIHIENFIKSIQASERGILR" gene 63913..65031 /gene="lpxB" /locus_tag="NT01SARS_0078" CDS 63913..65031 /gene="lpxB" /locus_tag="NT01SARS_0078" /EC_number="2.4.1.182" /note="identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215" /codon_start=1 /transl_table=11 /product="lipid-A-disaccharide synthase" /protein_id="EJP71607.1" /translation="MIKDRSLKIGVVCGEHSGDTLGAHLISELKKHKDIELLGVGGPK LENLGLNSQFNFEELQIMGIVDPILNYRNLSMRRKKLTESFIKNKIDLFIGIDSPDFN IKIHKSLKEKDICKNIQLVSPSVWAWRQNRTKLIKRFIDLTLCLFHFEHEFYKNINHE SIHLGHPFKTLEKASRKDILDKYSLDDTKKYISILPGSRESEIKNMLPAYIKFIENYS IPNSDTAYLIPASTNKLANKIYEMTNSLRNVVVEPFAINEFLSISEFSIVTSGTASLE SAVIGCPPIICYKTNPLNYFIISRMLKVQNIGLPNLLLEDSVFPELVQNECNQKNLLL AADKIFKITPQMNKIQSEIKEKLCGVGFANAAKSILDL" gene 65028..65579 /gene="rnhB" /locus_tag="NT01SARS_0079" CDS 65028..65579 /gene="rnhB" /locus_tag="NT01SARS_0079" /EC_number="3.1.26.4" /note="identified by match to protein family HMM PF01351" /codon_start=1 /transl_table=11 /product="ribonuclease HII" /protein_id="EJP71608.1" /translation="MKNIIAGVDEVGRGAIAGPVIAAAVILKKDIEGLKDSKKISEKK RIELSNKIKKYSYFAIGSASHNEIDKFNILNASLLAMKRAILNLPIKPTKILVDGIHK PDLDIEMEVIIGGDSLIKQISAASIIAKVYRDNLMYKFDKKFSVYGFKNNKGYGTKQH YSALEINGHSTIHRRTFKGVLKR" gene 65576..69013 /locus_tag="NT01SARS_0080" CDS 65576..69013 /locus_tag="NT01SARS_0080" /note="identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594" /codon_start=1 /transl_table=11 /product="DNA polymerase III, alpha subunit" /protein_id="EJP71609.1" /translation="MSAFSHLRVSSEYSISQGLLTINQIVDNASKKSIPSVALTDKSN MFGLVKFFDKCELAGIKPISGCSLNVIFDGDEDSHELLCLAKTNNGHKNLMKIISSAH NNYSYSSPIIQFKDLTELNNDIVVISGGKNSHIFEYLRRNNISDAENKIDQFTKYFKD DFVLEIQKTNREDELEFIKNILPLSIKKGIPIVATNDVLFSTQNDYEIHETKVCINTG RTLNDPNREKSFSDQQYFKSSEEMINLFKESSSFIDNTNEISKKCNVSLKTKGYFLPE YPVPKEHDFDSYITDLSHKRLNELVKDFDKNKKEEYVSRLDYELNQIKKMGFSSYFLI VYDFIQWSKNNDVPVGPGRGSGAGSLVAYSLGITTLDPIDHGLLFERFLNPERLSMPD FDVDFCMEKRDLVIEYVSKKYGADAVSQIATFGTMAARAVVRDVARAMGKPYALGDRI SKMIPFAPGMTLEKAESEQPIFAQSIKNDAEVREIVNLSYKLEGIARNVGKHAGGVVI APGSISDFCPVYVDRQSDSVMTQYDKDDVEKIGLVKFDFLGLRTLTVIDRAVKSINKE KKGKELFDINSIPLNDEKVFKLLASGKTMAVFQLESSGMRDLIKRLKPTKFEEITALL ALYRPGPLNSGMHDEFVDRKHGVSPVTYPHELLEEVLEETYGVIVYQEQVMEAARVLA GFSLGQADILRRAMGKKKKEEMEEQREIFVKGCVKNNIKEKNAEQIFDLINQFAEYGF NKSHSAAYALISYQTAYLKTYYPEHFMASVLSSELGNTDKIYALTQECSRMGIKVLKP NILYSRRGFVVNKNNEIEYGLGAIKGVADMFIKHICETRNKFKFRDLWDFSKKVDIKL GGKKSLEALSQSGAFDSLSPSRSIAIACVEDMLKDASIQNGQSNLKSGDLFANFDESF DPYDKYKNIQELTLSEKLEFEKKSLGYYLSGHPVIAIDNKIKKIRTNRISDLNTDIKK SSLVCLVNSVRQIKDRKGMPLTFINFDDGSGVMDGIISSEVLENCHNLLKEGSILSLK GSVEVDDYRSNDLGALMFRMRVKEVKSIDEELSKKTKEILIDTMKSDSITLDDFSEKL ELIENIFWKEGTCGINLKVQTNESEAIIELGDEYKFKPTLENLFYLEEIFGKDVIQI" gene 69036..69983 /gene="accA" /locus_tag="NT01SARS_0081" CDS 69036..69983 /gene="accA" /locus_tag="NT01SARS_0081" /EC_number="6.4.1.2" /note="identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, carboxyl transferase, alpha subunit" /protein_id="EJP71610.1" /translation="MDDEKFLNFEEPIKELAQKLSALRTAAVDSPALNDEILNLEKEN KALTKKIYSKLDTWQIVQVARHPNRPHTSDFIARIFDDFDELHGDRQFGDDASIIGGI GMLENMPVMAIGHEKGRDTDEKVKRNFGMTNPEGYRKAKRLMLLAEQFSLPVITFVDT AGAYPGVEGEERCQSEAIARNLATMSELKTPIIVVVTGEGGSGGALAISVGDHLSMLE YAIYSVASPEACASIIWRSSEKAPDAAEAMKVSSNELKKIKIVDEIIQEPLGGAHRDY DLISENIKGSLIRNLSILNQMSIEDLLERRYERILSVGT" gene 69973..70944 /locus_tag="NT01SARS_0082" CDS 69973..70944 /locus_tag="NT01SARS_0082" /note="identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432" /codon_start=1 /transl_table=11 /product="tRNA(Ile)-lysidine synthase" /protein_id="EJP71611.1" /translation="MAHKLLSIEELKSTLDFGKKIFIGYSGGPDSSALLYFLSKICSE YNLDLSAIHINHNISKNSNDWEVHCKETCKDLNINFINESTNIIPSGGGTEASARNER YRIFEKYLDHNDQLLTAHHSDDVTETIFLRLLRGTGIDGLQGPHKKRNLGKGYVIRPF LNISKKDIMQYLELNKIKYIQDSSNIDNSFDRNFLRNEIFPVLNERWNDFSKRVFKTS QLIEERNTNFSNLLKNNYKDLVKNKINKDELMKLDTEIIKEVLRHAIKEEGISMPSSK VLEEVIKTFIHSNPTSKSIVSWSRADKEQLAGKITFEDGKILISTKE" gene 70956..71729 /locus_tag="NT01SARS_0084" CDS 70956..71729 /locus_tag="NT01SARS_0084" /note="identified by match to protein family HMM PF00378" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="EJP71612.1" /translation="MNLETIQVLNQGKVSTIMLNRPDMLNAVNEQLVWDLQKATENVM NDDSVKVVILTGAGRGFSAGADLSERKASWSGSKDALIRGYKPSFENIINMPKPVIAS VPGPAAGIGAALAMSCDLRVMSEDSYLLSVFSNIALVPDGGLSWFLPKFMGYAKAYEH AIEAKKILASDCLKYGIANKVVPSDQLEQITLDWANQLAKRSSQSLNHTKRLMRESLA MSYWDTFSNEAEIQNELTVSDQNREAVKAFLEKREPNFD" gene complement(71726..73384) /gene="leuA" /locus_tag="NT01SARS_0083" CDS complement(71726..73384) /gene="leuA" /locus_tag="NT01SARS_0083" /EC_number="2.3.3.13" /note="identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00970" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="EJP71613.1" /translation="MDNPTDKYSAFQPISLQNRKWPEKVLKEAPIWCSVDLRDGNQAL IEPMGSERKNRMFALLCKLGFKEIEVGFPSASQTDFDFVRDLIENKKIPSDVKIQVLT QAREELIRKTFESLRGSKQAIVHFYNSTSTLQRRVVFDQDKEGIKKIALDAAILIKDL AEENPDTEWTFEYSPESFTGTELDYARDVCDEVVDILKTASKNKIIINLPATVEMSTP NIYGDQIEWMNENLKNRKNICLSLHPHNDRGTAVAASEFGLMAGADRIEGTLFGNGER TGNVDVVTIALNMLTQGIDPKLDFSNINSVMREVEYCNQLPVHPRHPYAGDLVFTAFS GSHQDAIKKGFNAMKSSNDPKWQVPYLPIDPADLGRNYEAVVRINSQSGKGGVAFLLE KDHGVSLPRRLQISLSQKIQKLADDTGKEISSTQIWDIFENNYLKAKNNYSYIKHESS TKDDIHSLSLIMKMGSSKEEISGSGNGPIDSFINGLSKKIGINIKVADYHQSAISSGS DAKAAAYIELEQDGKTFWGVGIHPNTTRASFDAIIVGLSKLLNT" gene 73415..73855 /locus_tag="NT01SARS_0085" CDS 73415..73855 /locus_tag="NT01SARS_0085" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71614.1" /translation="MLTPEIKTNLILKEIGIQRYSLRSQGKIISQKTYHYFLKGKILA IFDKPFENFVREQQDLIKAVLTSTKLDQGEEIFENAFFDSQESLQQKISSFNDIKLAI VFGKISYNLSFDCEVIYSPSVNQLMLQKNLKANLWKDIKKKLDL" gene 73858..74295 /gene="rimI" /locus_tag="NT01SARS_0086" CDS 73858..74295 /gene="rimI" /locus_tag="NT01SARS_0086" /EC_number="2.3.1.128" /note="identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575" /codon_start=1 /transl_table=11 /product="ribosomal-protein-alanine acetyltransferase" /protein_id="EJP71615.1" /translation="MYEISLMSQSDLKEAYEIEKTTNPTPWSKENFFSSFEVGHKSLA CKYNKRIVGFIIFSHIKKESHLLSIAVEKDHQRSGAGSILLKTMINQSKVLGAKKIYL EVRSKNKVAINFYSKFKFIKDAIRTNYYSGDSPDDAVLMSLDI" gene complement(74297..74776) /locus_tag="NT01SARS_0087" CDS complement(74297..74776) /locus_tag="NT01SARS_0087" /note="identified by match to protein family HMM PF00255" /codon_start=1 /transl_table=11 /product="phospholipid hydroperoxide glutathione peroxidase, ic" /protein_id="EJP71616.1" /translation="MKTIYDFSVKDSKLNEVSLTKFKDKVLLIVNVASYCGLTYQYEG IENLYKKYKKSGFEVLAFPCNQFALQEPGTNEEIRNFCDTKYAITFEIFNKIHVNGSK SDPLYKFLKNKMPGVAGTSQIKWNFTKFLISKNGDIVKRFSPQTEANEIELSIMELL" gene 74857..75315 /locus_tag="NT01SARS_0089" CDS 74857..75315 /locus_tag="NT01SARS_0089" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71617.1" /translation="MSTNINYIWKDYMDLSIDELYAIINLRQEVFVYEQNCPYIDADY SDQDAFHLLGYKENDLVAYLRAFKPKIKYEGSSIGRIVVKKDYRNLNLGKDITNLGKS FLFEKFPNHEIVISAQYRLEKFYENLGFTSRGDVYLEDDIDHIQMFILPN" gene complement(75308..77527) /gene="valS" /locus_tag="NT01SARS_0088" CDS complement(75308..77527) /gene="valS" /locus_tag="NT01SARS_0088" /EC_number="6.1.1.9" /note="identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422" /codon_start=1 /transl_table=11 /product="valine--tRNA ligase" /protein_id="EJP71618.1" /translation="MDKQYNPIEVEEKWVKIWSKRKVSNKESKESFSQVIPPPNVTGT LHMGHSFQYSIMDFYTRFNHMQGKDSYWQVGSDHAGIATQMVVENNLSKNNITRKDLG REKFIKEVWSWKDYSEKNITAQIKRLGCTVDWDKYRFTLDDGCNDAVIKAFVELYRKD KVYRGYRLVNWDPSLKTAVSDLEVIRQEKDGIIWHIKYPIEDSQDFVIVATTRPETMF GDMAVAVNPEDKRYKDLIGKKIILPFVGRKIPIIADKYVDMDFGTGCLKITPAHDFND YEIGKKYCLHEINGEVFTSKDADKFQPINIFNEDAWSNKNVPKPFQNLDRFKVRKLVL EKLNEKELLLKEEKHPISVPRGERSNIVIEPRLSNQWYVKTSEMAKKANDAVNNGEVK FHPNNWIKTYFNWMDNIEDWCISRQIWWGHRIPAWYDNENNIYVGFDETEVREYYDLD NRKLSQDEDVLDTWFSSSLWPFSSLGWPNDSEDLKKHFPTSLLVTGFDIIFFWVARMI MMSIEFTNKIPFKDVYVTGLIRDENGQKMSKSKGNIIDPLDLVYGISQDELVDKRTAN LMQEGLAEKIEKKTRNQFPKGIESYGTDALRMAFFSMATHTKDISFEFGRLKGFRNFC NKIWNAARFIDGYPIEKETFDAENDIDKWIYDEFQKTKEQINKNIIEYRLDFAVNEIY EFFWSKFCDVYIEECKNTGNTANLRPLLNEILHLMHPFAPFITEEISDLLFNKSIIS" gene complement(77541..79031) /locus_tag="NT01SARS_0090" CDS complement(77541..79031) /locus_tag="NT01SARS_0090" /note="identified by match to protein family HMM PF00883" /codon_start=1 /transl_table=11 /product="leucyl aminopeptidase" /protein_id="EJP71619.1" /translation="MAYKVLNNVSVKDVTSSDLLSLKTDLLVIVINKNTKDKVVNQLA KDVSSHLKESGSSVLVPNAKSFNAKNVLLVKGFQDSDQIHKLISMYQSIAQKGNQLKA KDISIMPGTVYPKGKCEMWLIEMVAKTIESNVYIFSETCNKTAKKPSVKKLNILVSSL TKSDLIKAKNAAKKGYAIGEGVNSAKYLGDLPANHCTPRIIEKKVKAMTKDFPKLKVK SFNENQMKKMGMGSFLSVSRGSEEPARMMVIEYKGGKSSEKPVALVGKGVTFDTGGVS IKPSPAMDEMKWDMCGAATVFGVMSMLARLNANVNVVGIMGCAENMCSSKATKPGDVV TSMSGQTIEILNTDAEGRLILADCLTYVGKYKPSHVIDMATLTGAVVIALGRHASGVM TNDQHLADMIIESGEESGDRAWQLPLWDEHQSCTNTKYADLANIGGGREAGTIHAAAF LSKFTKDYKWAHIDIAATASYSTPVKAGTGRPVPLISELLLSKRLK" gene 79077..80228 /locus_tag="NT01SARS_0092" CDS 79077..80228 /locus_tag="NT01SARS_0092" /note="identified by match to protein family HMM PF03739" /codon_start=1 /transl_table=11 /product="putative permease YjgP/YjgQ" /protein_id="EJP71620.1" /translation="MHHTSQGMYKKNILSKSLNIEVLKSSVAILFIFFFLVIGSRFVG YFEQASEGLLDPNIILKVVVLRFPDFITLLIPFSFFLGVVVTISRMYAENEIYGYFSA GLSKNNLLKFLFPQAIAFFFSTLILSLFVAPYTKELSKDMLSVDSFQDQFESIKPNKI FMFNEGDGFIYSDKKNDNVLEGVTIFLSDGDSSSLILSDSMTFQNHGAELDLKFEDGK LHQGIFESKNQITSDFGKLKIPIDNDTSSLSGLSLSKLFDYSLKSSKSEFLWNISIPI TIFILLLIGISISKVEPRQGRLSVFFPAIAIYIFYLSLLILTRDLIDGDNSLSQYYIW LTHLLFLLIGLFGLFWQDFLKPNIIFKKGYFPRIMLIIFIIFLFVWIVS" gene complement(80197..80370) /locus_tag="NT01SARS_0091" CDS complement(80197..80370) /locus_tag="NT01SARS_0091" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71621.1" /translation="MLVKVYLSEIFSNSEIKENIESSIPNNIKMDIEKTNDLFIKYKL KIPINLQSIQREK" gene 80435..81235 /locus_tag="NT01SARS_0094" CDS 80435..81235 /locus_tag="NT01SARS_0094" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71622.1" /translation="MGVMIALAISHQEGNLNVLRSAGKSPFKIILISSIGPILLATLL ILFDEVIFKKSYINAEINKNVLLEKVIASNENKWINQNDLFLGYQDIIEDNIFNAKLI KLIDDKEINVFESKLAKIDDTKIVFGNDQQVNFVIPIQSRISIKNIQNENISELYYLK KLFIESKLEDDILFKQHIDKALYKVVLIPLSIFALIAYFGSLIFGSLRDLNIGARITI AVFGAFVYKLMQDLSIGIFISFNLSVLIGVMIPSILLALLAINSYRKI" gene complement(81232..81642) /locus_tag="NT01SARS_0093" CDS complement(81232..81642) /locus_tag="NT01SARS_0093" /note="identified by match to protein family HMM PF06271" /codon_start=1 /transl_table=11 /product="RDD domain protein" /protein_id="EJP71623.1" /translation="MSENSHKVFPLKRIAAAIYDLLLLLGVWFASGSIAVWINGGIIE SKWIGPLIVFLSTWIFYGYFWTHGGKTLGMAVWKFEIYSLDKKPVTFYQISIRYFCNL LTFFLFGLPLVLIYFTKNNLSLSDIISKTTYQKI" gene 81682..83157 /locus_tag="NT01SARS_0095" CDS 81682..83157 /locus_tag="NT01SARS_0095" /note="identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924" /codon_start=1 /transl_table=11 /product="inner membrane transporter YbgH" /protein_id="EJP71624.1" /translation="MSSTSDFLGHPKGLFVCFATEMWERFSYYGMRALLILYLTKHWE FTDTTSYLIYGAYTSLVYIMPVFGGMLADQILGSKKAVTYGAILLVFGHLGMTVESSE QVFYLSLALIVSGVGFLKPNISTMVGALYEEGDPRRDSGFTIFYMGINIGAFTATLLC GYLGEEIGWAYGFGAAGIGMLLGLIIFLWGQKYLEGLAEPPSNKYMTKINGISYENWA YISGVVMVLITWFLVQNSQLVGQLLGGFGVIFIGAWLFYALLKCAPEERDRLIVVGIL ILFSLIFWALFEQAGSSLNILTDRGVDRVIFGWEVPASMFQSLNAGFIFTIAPLFALL WIALAKRNMEPSTPIKFAIGIVFVGLGFLALVYGMKSSEGLQTGVFWIILIYLLHTLG ELCLSPVGLSSVTKLSPQRIVGFMMGMWFFASAAGNYVAGLIARATASESSGEASDVF NLAQKQAFMDVYTDVGIIAIGCGIFLAIITPLLKKLMHGAN" gene 83144..83263 /locus_tag="NT01SARS_0097" CDS 83144..83263 /locus_tag="NT01SARS_0097" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71625.1" /translation="MARIKKKDPVKKNMDKFHKPKTHKDKTKYNRKKKSKDFD" gene complement(83247..84374) /gene="dapE" /locus_tag="NT01SARS_0096" CDS complement(83247..84374) /gene="dapE" /locus_tag="NT01SARS_0096" /EC_number="3.5.1.18" /note="identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01246" /codon_start=1 /transl_table=11 /product="succinyl-diaminopimelate desuccinylase" /protein_id="EJP71626.1" /translation="MIDFLQQLIRIKSLSPNDEGCFDLIEKELKELNFKCERINYQNV ENLYATIGDSGKLFCFLGHTDVVPSGPEDKWKYPPFSATIEQDILYGRGTADMKSSVA VFMESAKEFLKTIEKLNFRLAILLTSNEEGNSKDGFIDKIVEKMIDDDEHIDFCLVGE PTSSKKVADCARVGRRGSLGGKLKIFGKQGHIAYPENVINPIFLSSDLITKLKNKKWD NGNDIFDPTSFQISNISSGTGAHNVVPGNLEIIFNFRFSTESSEQSLKADFESIINDL GINYECEWDLNGDPYLTEENFFKDIVCSSVEEITGYLPELNAKGGTSDGRFVAKMNTE IVELGPVNQSIHQVDEHVKISDLWKLKDIYKNILLNLNQNL" gene complement(84367..85281) /locus_tag="NT01SARS_0098" CDS complement(84367..85281) /locus_tag="NT01SARS_0098" /codon_start=1 /transl_table=11 /product="transferase" /protein_id="EJP71627.1" /translation="MKIHGEGIANKSESGQILDVYFPNIEFDNQKTEFKTIKITSNAQ EIIMLDWSKNDLDEPIKNAADAYFKLHLISNRFVLPNTVNLDGLFECLPNVVWTNKGP ISIDEIELRLKESKSGKNDLYIRSIDKFPCLTDYVVPKKVRIADASRVRLGAYLSAGT TVMHEGFINFNAGTLGKAMIEGRVSAGVVIGNNSDLGGGASTMGTLSGGNDTKISIGE NCLIGANAGVGISLGDNCIVEAGLYITAGTKINLTKDKNESPLIVKARDLSGKSNLLF IRDSLTGMVIAKPNQKKSNLNKELHSND" gene complement(85287..87797) /locus_tag="NT01SARS_0099" CDS complement(85287..87797) /locus_tag="NT01SARS_0099" /note="identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF08335" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="EJP71628.1" /translation="MIEKISKLNNEFNKSFPEVYLKPSKVNKFLRKYSNEVERKIKKR FLDLDLDKNFVIYANGGFGRKEIFPISDIDISIVEKNKSNNFKNLEEFISYLWDQGYK VGHSVRSISDIKKISKKDIREFTSYLTRRPIISTNEMDNKINYALSKLWSKNNFYNAK FIEQQQRHSKFFSTAFNLEPDLKESPGGLRDFQSALWILQHCFDLRTTSDISRSKIFN SELNDALDAYNFIKSLRFATNILTNQNRLNFEAQVEISKKARLGKRSAKNSVEKMMKK FYEMAAVLSYFNEIVYEKYNEKYPKKNYFQKIKGIHKYGSKIGIENINLRNNKNLIFE IFVEIGKSKTINSIDTKTKSLIRKNINFIDKEFRKNEEYASQFLEILRSKYNLSSILR TMKSLGVMQEYIPEFKSVVGQMQFDLFHTYTVDEHTFKVVRNMRQMKLNKQTGFELEH ELINKLPKIEILYLAGLFHDLGKGKGGDHSEIGAKTSKRFAKRLGMSKTDADLISWLV KKHLIMSSISQKKDIGDPNTVNEFASVVESSEKLDYLYLLTINDIRATNPALWNGWKH LLLKDLYLLTRSKINKEPMKASSQISIERQKNVFDSLDTKEEKEFITHHFKNFEDNYF NKNSSSSLLWQSKLILKNKNKEFVIGCKQKFNELIEIFVKVDDSPGLFYKLVNIFDRA GLEIIDASIFTSKDNQFAANTFITKFSRQDRVLNKSELIELSSKIEKNFHAVDQITER RKVKKKNAKFEKIVKIDESIDINKNRNLITVETVDSSGLLANISKVFFENDVSIYSAR INTLGERVEDTFEIENFNKKLVPNYKIKKIISELKKVV" gene complement(87794..88588) /gene="map" /locus_tag="NT01SARS_0100" CDS complement(87794..88588) /gene="map" /locus_tag="NT01SARS_0100" /EC_number="3.4.11.18" /note="identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase, type I" /protein_id="EJP71629.1" /translation="MSSYNYKKMKISIKNSSEIEKMRVAGKLAAEVLEMITPYVIPGV STGELDKICFDHIVNNQNAIPANVGYKGYEKTICASVNQVICHGIPNNQKILKDGDIL NIDVTVIKDGWHGDTSKMFLVGKCAPHNERLVRITQECLYKGIEAVKPGAYLGDIGNA IQKHAESNYYSVVEDYCGHGIGTIYHEEPQVLHYGKSGSGIQLKEGMCFTIEPMINQG TKFSKILSDGWTVETRDGRNSAQWEHTIAVTKDGSEILTKRNEEFQ" gene 88718..89839 /gene="carA" /locus_tag="NT01SARS_0101" CDS 88718..89839 /gene="carA" /locus_tag="NT01SARS_0101" /EC_number="6.3.5.5" /note="identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase, small subunit" /protein_id="EJP71630.1" /translation="MSFPAILAFEDGSVFQGIGYGKEKYDVGEIVFNTSMSGYQEIIT DPSYKKQIITFTHPHIGNTGTNKEDSESEMIHASGIVVKNFCEKPSNWRSSESLEEFL LKHDVMAISGVDTRQITSILREKGAQNCCIGALSKISEKDAIQKAKNFSGLEGLDLAK VVSTKENYLWDTGVWPHYAKSTLDYPIVAMDFGIKKNILNLLSDTLGKVHVVNAQTEY NEIKKLNPKGIFLSNGPGDPEPCDYAIENIKKFLEDKIPIFGICLGHQLLGLASGAQT FKMKFGHHGANHPVQDSKTNEVFITSQNHGFAVDIETLPKNVNVTHQSLFDKSLQGIE FSDRPAFSFQGHPEASPGPHEIQILFMKFKKMVEEYAKT" gene 89826..93038 /gene="carB" /locus_tag="NT01SARS_0102" CDS 89826..93038 /gene="carB" /locus_tag="NT01SARS_0102" /EC_number="6.3.5.5" /note="identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase, large subunit" /protein_id="EJP71631.1" /translation="MPRRKDISSILIIGAGPIIIGQACEFDYSGAQACKALKEEGFRV ILVNSNPATIMTDPLLADATYIEPIHWESVEKIIEKEKPDAILPTMGGQTALNTALTL DKKGILKKHNVFLIGANREAIDKAEDRQLFDETMQAIDLETPASGIAHSMEDALQVQK EIGFPCIIRPSFTMGGTGGGIAYNITEFREICEKGLELSPTNELLIDESLIGWKEYEM EVVRDSEDNCIIICSIENFDPMGIHTGDSITIAPAQTLTDKEFQIMRDASFKILREIG VDTGGSNVQFAVNPENGKMVVIEMNPRVSRSSALASKATGFPIAKVAALLSVGFTLDE LKNDITGGLTPASFEPSIDYIVTKIPKFAFEKFPQASPKLTTQMKSVGEVMSIGSNFQ ESLQKALCSMEEGLDGLNSLKIENNNISEETLINELTIPGPKRLFYVADAIRQGWSLE KIYSLTKIDFWFLDQLGELINIENDLISKNFSDIDSGFLRGLKKKGFSDKRIGKLLRS TEDEIRSFRLKNKIKPVFRRVDTCAAEFATSTCYMYSTYDDECESNPSLNKKILVLGS GPNRIGQGIEFDYCCVHASLAMQEEGYESIMVNCNPETVSTDYDVSNRLYFEPITSEK ILDIIDIEKPEGVVIQFGGQTPLKLADTLSENGVKILGTNVDAIDRSEDRERFQELVT KLNLKQPSNATAINIDEALEKAENIGFPIVVRPSYVLGGRAMQLVNNIKELKKYLNEA VEVSNSKPILLDSYLTDAIEVDVDVVSDGINIEIGGILQHIEQAGIHSGDSACSLPPY SLSKEIQSVMTNQAVDIAKELKVIGLMNIQFAVKDDEVYIIEVNPRASRTVPFISKAI GNSLAKVASKAMIGMSLIDQKFSSKLPKNLFFVKEAVMPFDKFPHVDPILGPEMKSTG EVMGIGPNFGEAYAKAQKGANKILRRTGSVFISVKKSDKKYLDEFVPSIIEAGFEIVA TSGTAQYIEALGYKVEKVNKVMEGRPHIVDSILNNDIDLIINTTEGSQSIRDSASIRQ SALRNKIFCTTTMFGAFAIIDALQGSENDWTYTTLQELNK" gene 93063..93539 /locus_tag="NT01SARS_0103" CDS 93063..93539 /locus_tag="NT01SARS_0103" /note="identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462" /codon_start=1 /transl_table=11 /product="transcription elongation factor GreA" /protein_id="EJP71632.1" /translation="MSRVPLTKEGEISIKEKLSHLKFVERPQISQAIAEARAHGDLKE NAEYHAAKELQGLIEAKINEMEIALANAQVIDVKEIPETGRVVFGSTVTVVDLENDKE ITYKIVGNLESDPDNGHISIDTPIAKGLVGKFIDDEINIQTPSGNLNFEILEVKHI" gene 93542..94105 /gene="rrmJ" /locus_tag="NT01SARS_0104" CDS 93542..94105 /gene="rrmJ" /locus_tag="NT01SARS_0104" /EC_number="2.1.1.-" /note="identified by match to protein family HMM PF01728" /codon_start=1 /transl_table=11 /product="ribosomal RNA large subunit methyltransferase J" /protein_id="EJP71633.1" /translation="MHQDNWSLKAKKMGYRSRAVFKLEEILLKLHKNQINKVLDLGSA PGGWSQFIINKYPHSKIIAVDILHMEPIDGVQFIKKNIEDIDSIQLINSQKGKFDLVI SDIAPNLTGISAVDNENIYELNKITINLANIYLSEVNSAVVIKTFQNNNFKSLKKEME LFFKIVQTYKPAASKNKSAETYLYGAR" gene 94109..96016 /locus_tag="NT01SARS_0105" CDS 94109..96016 /locus_tag="NT01SARS_0105" /note="identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241" /codon_start=1 /transl_table=11 /product="cell division protease FtsH" /protein_id="EJP71634.1" /translation="MNSFMRNLVVWVVLGTLMIYVFNNIENSSAREQISYSQFKQEVL SDRIAKVVYKGDQMTIIGDRLDGTKFETTHPIFKKDEAVDNAIEENGVIAVYEKVEQP SIFSQLLVGAFPIILLLAIFFFFMRQMQGGMSGKGGPMSFGRSKAKLMEGGKVKTTFK DVAGCEEAKQDVQELVDFLKDPTKFQKLGGKIPRGVLMVGPPGTGKTLIARAVAGEAK VPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQSPCIVFIDEIDAVGRHRGAGLGGGH DEREQTLNQLLVEMDGFEGNDGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIRG REAILKVHMRKVPLDADVDPLVIARGTPGFSGADLANLINEAALFAARYSDKKIDQSH LDLAKDKIMMGAERKSMILSEEQKRITAYHEAGHAIVGRLSPKHDPVYKVTIIPRGRA LGVTMFLPEEDTYMQSKEYLEGRIAALFGGRIAESIINGDKGITTGASNDIEVATNIA TNMVTKWGLSKAVGPLKYGEDEGSPFLGRTAAAPAQNISGETAKLIDKEVKSIIDTCY AKAENILKENLDKLNVMADALLKYETIDADQIDDIMAGATPREPKGWSDDTPKGKSKK KTSIKGAAEEL" gene 96026..97348 /gene="glmM" /locus_tag="NT01SARS_0106" CDS 96026..97348 /gene="glmM" /locus_tag="NT01SARS_0106" /EC_number="5.4.2.10" /note="identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455" /codon_start=1 /transl_table=11 /product="phosphoglucosamine mutase" /protein_id="EJP71635.1" /translation="MSLKFGTDGIRGPVESVVTPDACLRIGHATGLAMKELGWDTVVI GKDTRVSGYMLEAALQAGFIAAGVNVRLLGPIPTPGVAYLTKTLRNKFGVVISASHND FLDNGIKIFNEDGEKISRDIEKRIEKHLAGDLSSVETSAIGKAYRFDESGPRYIEFCK STVPSEISFSSLRIVLDCANGACYKVSPEVFEELGAEIIKIGTEPDGYNINQECGSTH PEIVSKAVIDHRADFGVSLDGDGDRVILVDEKGNILDGDDLLYILAFANPNRTGAWSG VVGTKMSNLGLEDGLKKLGYKFVRSDVGDKYVSEMLSKKGWMLGGETSGHIICRDLVS TGDGTIAALKVISSLLLLEKKPSEVLANFKKIPQVNTAIKVKNKDIVNDKDLQSLIKE IESDITVGRVLVRPSGTEPKIRIMIEAPEIKVAKKYAADIEKLIESKS" gene 97345..98109 /gene="tpiA" /locus_tag="NT01SARS_0107" CDS 97345..98109 /gene="tpiA" /locus_tag="NT01SARS_0107" /EC_number="5.3.1.1" /note="identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419" /codon_start=1 /transl_table=11 /product="triose-phosphate isomerase" /protein_id="EJP71636.1" /translation="MIIANFKSNVINFDKWFDDFENLCSPVEFNFDESDLDLGIKHWP EVGIAPPSIYITEYSTPKLAIGAQDVDHSSGSRTGAISIEMLDEVGVEFVIIGHSERR EFFHEDNDLIRKKIQAVNESKIGSIILCIGETKEENKMGATKDVLKNQLSVINGFELG KNFTIAYEPVWAIGSGQTPEPKDINEIHKYIKDVVQSTSTNNQVPNVVYGGSVTDKNA ESFFKEEFVDGALVGGASLNGTTFANIVNIWRENII" gene 98111..98422 /gene="secG" /locus_tag="NT01SARS_0108" CDS 98111..98422 /gene="secG" /locus_tag="NT01SARS_0108" /note="identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810" /codon_start=1 /transl_table=11 /product="preprotein translocase, SecG subunit" /protein_id="EJP71637.1" /translation="MIIFIKVLCIILAVIIVALVLLQQGKGSDLGSAFGGGSSNSMFG ALGPSDFLGRLTYYIVAIWLVLSMLLAYLYKTENSEVIFDTPLIEEAVEEGLSDEIPI E" gene complement(98430..98518) /locus_tag="NT01SARS_0109" tRNA complement(98430..98518) /locus_tag="NT01SARS_0109" /product="tRNA-Leu" gene 98610..98688 /locus_tag="NT01SARS_0110" tRNA 98610..98688 /locus_tag="NT01SARS_0110" /product="tRNA-Met" gene 98739..99221 /locus_tag="NT01SARS_0111" CDS 98739..99221 /locus_tag="NT01SARS_0111" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71638.1" /translation="MYKEEIEKIIVPVITRNDCYLWGTEILRGKKRTTLRIYIDSKKG VDINDCENISKDLNYEPNLDLNLGDNYVLEVSTPGIDRKFFDINQLKDYIGEELSLKS KEIHEGKRNFTGILTQCNAEIISIKVKEKVLEFNFNDIDFCRLKPNFNELMKERDYAK " gene 99211..100671 /locus_tag="NT01SARS_0112" CDS 99211..100671 /locus_tag="NT01SARS_0112" /note="identified by match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953" /codon_start=1 /transl_table=11 /product="transcription elongation protein NusA" /protein_id="EJP71639.1" /translation="MQSNEILGVVDSVSTEKGLDKDVIFKAIEIAIASASQRHFHEDA DLYVNIDRETGEYSTHRNWIVFDPDNEEFHHETHISKDDSGLELEEVYTLQQENIKFG RIETQAARQVMLQKVREAEREKIVEQFRSQNNKLVSGSVKRVTRDNIIVDITHEAEAL LPRDKLMPGEIYKINDRIRAILQIVEVEGRGPQLMLNRSCPEMVTELFSIEVPEINED VIEIRGVARDAGSRSKIAVKTNDGRIDPVGACVGMRGSRVQAVSSELGNERIDIIIYD DNPAQLVINALSPAKVESIVMDEDSRSMDIAVNEDNLALAIGSRGQNIRLASKLVGWD LNIISNEEAEAKIKVDETEFLAKIIDSLEVSDEIAEKITSLGMGSFDDIAYADDKIFS EFIESSEEIARIKSSAEDAALLEAMGAVTEEEDNIESLSDLKLSEENIQLLSNKGVKN KDDLAELSIDELKEIIEISDDEASKMIMKAREHWFK" gene 100680..102941 /gene="infB" /locus_tag="NT01SARS_0113" CDS 100680..102941 /gene="infB" /locus_tag="NT01SARS_0113" /note="identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="EJP71640.1" /translation="MAITVKDFAKTLKITDKALIERMQKAGLNHSKGSDEVTPSDKQA LLKYLKGSKSAASKSVTSESGVKVTSRGKVTSASSSKKSYSDNIEAKRAAASEQLKEQ QIKREEQLKAAAKLKQEQKKSKAIKKQSAPEKIVDVKDQLSSAVDAYKKKEVVFEDSQ HQFEEPKEFIKKDIEVPQTIQVGELAKLMAVKGGEVVKNLMSLGVVATINDLIDQETA ILVVEEIGHNGIAGKEENLEEDLANLIKYKDEKKTRPPVITVMGHVDHGKTTLLDFIR NTKVVEGEAGGITQHIGAYQVETSKGLLTFIDTPGHAAFSSMRARGANTTDIVILVVA ANDGIKPQTEEAINHAKAAGVSIVVAINKIDLDGADIDKVKGDLAAKDLTPEDWGGNI QMVPVSALKGDGIDDLLERIALEAEILELKAHYEGAAQGVVIESELDKFRGSVATFLI QNGTLKVGDLVVSGNSMGKIKSIVNSDGQKIKSAGPSAAVEVLGLNSVPGAGDQFQVV KNEKQAREISEYRLTKEKEKKLLKQKDESAGDLFETLGQEAKKVLNVIIKTDVGGTCE AIVAALNDLAGEKAKVKIVSSGVGGISESDANLAVAVESIIIGFNVRADNTAKKIIES ESIPLSYHSIIYELLDDVKARMSGLLDPIVKEIIVGTAEVLEVFNSPKFGQVAGCNVI EGNVLRNKPVRVLRDEVVIFEGELNSLRRFKEDVNEVKNGNECGMGIKNYKDIKPGDK IEVFDRKEEAQEI" gene 102945..103292 /gene="rbfA" /locus_tag="NT01SARS_0114" CDS 102945..103292 /gene="rbfA" /locus_tag="NT01SARS_0114" /note="identified by match to protein family HMM PF02033; match to protein family HMM TIGR00082" /codon_start=1 /transl_table=11 /product="ribosome-binding factor A" /protein_id="EJP71641.1" /translation="MSSNRPEKVADLLKREISLILSQEVKDPRLQNINITAVKVTDDI GIAYLYYTVIGKSIRKSDSNIESKTLTKLAGMIRSKLSKIVEMRRVPKLIFKFDESIE YSENIENLLKNLK" gene 103294..104133 /gene="truB" /locus_tag="NT01SARS_0115" CDS 103294..104133 /gene="truB" /locus_tag="NT01SARS_0115" /EC_number="5.4.99.-" /note="identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase B" /protein_id="EJP71642.1" /translation="MNGFFLVNKEKNYTSNDVVQKIKKKFSFKKVGHLGTLDPIAEGL IILAVNRATKFSNYFLESDKSYFVEIKLGISTDTHDLTGQIVAKAPVKVTEKALKNEI NNFLGASFQKPPYFSALKHKGRPLYEYARKGEFIDKEPRRIEIKEIKNITYKNEICSF ELTCSKGTYIRSIARDLGENLGCGANMISLKRLKQHNFDLKNARTLENIKKNEMIKIE EAFLYLEKILLNDRESNLFQNGQEIIAQKNLKGFYRIYKNVNEFMGLGFVEGEILKHK QLV" gene 104219..104488 /gene="rpsO" /locus_tag="NT01SARS_0116" CDS 104219..104488 /gene="rpsO" /locus_tag="NT01SARS_0116" /note="identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952" /codon_start=1 /transl_table=11 /product="ribosomal protein S15" /protein_id="EJP71643.1" /translation="MALLTEEKAKIVEKYKRNDGDTGSPEVQIALLTENINKLQSHFK NHNKDHHSRAGLIRMVNLRRKLLAYLKRKDADSYADLVKKLNLRG" gene 104514..106610 /gene="pnp" /locus_tag="NT01SARS_0117" CDS 104514..106610 /gene="pnp" /locus_tag="NT01SARS_0117" /EC_number="2.7.7.8" /note="identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591" /codon_start=1 /transl_table=11 /product="polyribonucleotide nucleotidyltransferase" /protein_id="EJP71644.1" /translation="MENNNLESTSVEFQYGKQTVKIETNKIARQATAAVVVTIGDLVV LTTVVAKKEADPAKDFFPLAVFYQEKFYATGRIPGGFFKREARPTERETLTSRLIDRP IRPMFPDHFTNEIQVFCTVMSSDKKQNPDIASMIGASAALTISGVPFDGPMGAARVGF IDGEYVLNPSFEELNDSYLDMVVAGTDEAVLMVESEAKELNEDLMLGAVLFGHQEMKA VITACNELKQKTGKEAWNIESVKEENNYYDELQSNHKDEIENAFKISNKAERNEALKE IRDKIKENYEELDELDMGKLMSEFKKLEKDIVRGNILNNQPRIDGRDLDTVRPIFVET NILPGAHGSALFTRGETQAIVAATLGSSRDAQRIESIEGEDSDNFMLHYNFPAYSVGE IGMPMGPKRREIGHGNLAKRAIKAVLPDSDEFGYTMRVVSEITESNGSSSMASVCGTS LSLMDAGVPLTSPVAGIAMGLIKEGDDFAVLTDILGDEDHLGDMDFKVAGTESGITAL QMDIKISGINESIMETALTKAKVARDHILGIMNKVISKPKELSENAPAMKTFMVDKDK IKEIIGKGGAVIKSMQEKTGATVDISDDGVVSVFGQNQSSMKECLAIIEGILEEPELN KVYKGSVVKIVEFGAFVNILPGKDGLLHISEISEERTENVNDVLEEGQEVEVKLIGFD RGKMKLSMKALADNNE" gene 106762..106977 /locus_tag="NT01SARS_0118" CDS 106762..106977 /locus_tag="NT01SARS_0118" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71645.1" /translation="MDNAWKMINGIVKSLTEVLIGVLGLGIVGALVFGDVLGLDVIGN ITGLVEMLTSNGVVGLLVLAILMSLVK" gene 107035..107268 /locus_tag="NT01SARS_0119" CDS 107035..107268 /locus_tag="NT01SARS_0119" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71646.1" /translation="MNFKFTFAGLTALLNKVTKLLIPLVVVSLLLGILLGIDTPFVGD VYKNVSSVVDMLGEDGLLVLISVIIILSYLNKD" gene complement(107288..107366) /locus_tag="NT01SARS_0120" tRNA complement(107288..107366) /locus_tag="NT01SARS_0120" /product="tRNA-Met" gene complement(107417..108505) /gene="ychF" /locus_tag="NT01SARS_0121" CDS complement(107417..108505) /gene="ychF" /locus_tag="NT01SARS_0121" /note="identified by match to protein family HMM PF01926; match to protein family HMM PF06071; match to protein family HMM TIGR00092" /codon_start=1 /transl_table=11 /product="GTP-binding protein YchF" /protein_id="EJP71647.1" /translation="MGFKCGIIGLPNVGKSTLFNALTKSKIPADNFPFCTIDPNIGKV PLPDERLLQINKIVNSQKIIPATLDLVDIAGLVKGASKGEGLGNSFLSNIREMTALAH VVRCFGDENITHVDGSVDPIRDVEIINLELIFADLDSVSKRISKCEKLLKTNDKENKL QYEILLKLKQELEDGFLINLEKYEEHEQQIIKTFNLLSSKPTFFIGNINESDESRKMI EDLKSLAENLNTFVIPASIKIEHEISMLDENEKKDYLDLMNMDEPVLNKIIFEGYKML GLKTFFTAGPNEIRAWTIKNGFTAPNAAGVIHSDFERGFIKAEVIDFDDYIKNGGELG SKENGKLRLEGKEYLVKDGDVIHFKFNV" gene complement(108508..109074) /gene="pth" /locus_tag="NT01SARS_0122" CDS complement(108508..109074) /gene="pth" /locus_tag="NT01SARS_0122" /EC_number="3.1.1.29" /note="identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447" /codon_start=1 /transl_table=11 /product="aminoacyl-tRNA hydrolase" /protein_id="EJP71648.1" /translation="MYKLCFVGLGNPGSKYQNTRHNIGKDFLKKISIEYSLKFSKKIK FEAEISESHSGNILWVIPDNYVNQSGRTVSKILKSTNLTSENIIVIHDDLDLKVGDLR LKENGGHGGHNGLRDIIEKINSKDFYRLRVGIDHPGKKEDVTNWVLNKFTPDEKKSIS NAFKEFSNIFELICLNKISEVQKILHTK" gene complement(109079..109795) /locus_tag="NT01SARS_0123" CDS complement(109079..109795) /locus_tag="NT01SARS_0123" /note="identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731" /codon_start=1 /transl_table=11 /product="ribosomal protein L25, Ctc-form" /protein_id="EJP71649.1" /translation="MTEQIILNADPRERTGSNKARVIRKVDGMVPAIVYGDEKETLNI KLKLNELTKASENELFYTQVLLIKTGDNEEKVVLKELQRDPAKGKFLHADFQRVSSKT KLKVVIPVSFINEEDCIGVREDGGVVTKTIREIEIMCLAGNIPESIDVDIEKLNLGDS IRLTEISLPDGSEIPGLTEETDQMVVSVNAPKAVEEDPIIEELEEGDVAEGEASTEET AGEESGSTEENTEEDSNEES" gene complement(109804..110757) /locus_tag="NT01SARS_0124" CDS complement(109804..110757) /locus_tag="NT01SARS_0124" /note="identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251" /codon_start=1 /transl_table=11 /product="ribose-phosphate diphosphokinase" /protein_id="EJP71650.1" /translation="MKDNAFDIFTGTANPELAEEVSKILKIDIAPADVGYFSDGELNV QIQENVRGHDTFIIQSTCSPTNKNVMEIMLIADALKRSSASKITAIVPYFGYARQDRR VRSARVPISAKVVADMFASVGIDRVLTIDLHSETIQGFFDMPADNVYATKFMVDDIKD NNERDEVVVVSPDVGGVVRARALAKLLDDTDLAIIDKRRAAANQSEVMNIIGDIQGKV CIVPDDIIDTAGTLCNAANALKENGAKAVKAYITHPVLSGPAIERLENSSIDELIVTN SIPLTPDAKKCSKIRVISLANIIAECIKRLSNEESLSEMFL" gene complement(110784..110860) /locus_tag="NT01SARS_0125" tRNA complement(110784..110860) /locus_tag="NT01SARS_0125" /product="tRNA-Gln" gene complement(110863..111678) /gene="ispE" /locus_tag="NT01SARS_0126" CDS complement(110863..111678) /gene="ispE" /locus_tag="NT01SARS_0126" /EC_number="2.7.1.148" /note="identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154" /codon_start=1 /transl_table=11 /product="4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase" /protein_id="EJP71651.1" /translation="MNKLLLKSPAKINLDLTILNKLKNGYHEINTSFQLIDLFDEIEF ESSKNNISLSSNLKELNSDDNIITTVARKLKNSNSKLGVKIKLKKLIPIGAGLGGGSS NAASTIVALNKLWDLKMSKSEMHNFARNIGADVPFFLFGQNAQGNGIGDILKYKDSIT DNILIIDPMIFSSTEEMYREYDLINNKNKIIKDNPNNNDFLDIFLEKNNQVKEFFENN AQEFEIRLSGSGSCMFVIYNDEKNIQKFIKKIPSNWRFFSCKPLQYSPICYIK" gene complement(111675..112157) /locus_tag="NT01SARS_0127" CDS complement(111675..112157) /locus_tag="NT01SARS_0127" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="EJP71652.1" /translation="MTKYYLLIFYFFLLVSCVSSSNFTKSELNYNAKIKIFDETDIIK SNISVFQNRIIIQFYEYIVGNLAKIELYDDGNILIDGIDIKNIDFEVNNFSNKKYFQV LNSCLRKNTEEYSDEKLSINCNDHGDINFDINDLGQIKIKLVISKKLERKDKTPSAAK " gene 112156..113388 /gene="hemA" /locus_tag="NT01SARS_0128" CDS 112156..113388 /gene="hemA" /locus_tag="NT01SARS_0128" /EC_number="1.2.1.70" /note="identified by match to protein family HMM PF01488; match to protein family HMM PF05201; match to protein family HMM TIGR01035" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA reductase" /protein_id="EJP71653.1" /translation="MELQLFGINHKTSKVSERERFIINDTNQILLSSHLKKIFKDDIE SFFGISTCNRTELYFVGKKDITKNVLNETLKALQVNNISDDSFYFLSGHDALVHMSKV ASGIDSQVLGEQEIFGQFKTAYKKAKDIGIVGRELIYLSEKVIEISKKARTQTKIGLN SLSVSGLALKLVNNIFENPQDQNVLVVGAGSLAQNVIKRLYEKGIDKIKSINRSIKKI KLNDSYEIFSGSLESLHNELEHTDIVIASSTTELPIIGKGAVENALRTRKNKPMLLID LGVPRNIEEEIKNIEQAYLFSIDDIEKITQENIGQRTIEAEKALNIIALEAQSALDGH YQKISKDNVNNQLESFLNSLSDNEIVQFKQSNDYSELVKAIKTMDVDNVNLNNFQEIK NFDDHIIESMIKNYFNNA" gene 113381..114466 /gene="prfA" /locus_tag="NT01SARS_0129" CDS 113381..114466 /gene="prfA" /locus_tag="NT01SARS_0129" /note="identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019" /codon_start=1 /transl_table=11 /product="peptide chain release factor 1" /protein_id="EJP71654.1" /translation="MHDSMLNKLDQLKNRIAEIETLLVDSETVKDIEKYTQLNKEFSE LKPIVAKFDEYKKIIKSIDDANEIIKSGDEDLKLLAEDDLRINIDKPEALEQELKFML LPKDSADDGSAYLEIRAGAGGDEAGIFAGDLFRMYTRLSEREGWNLEIMDIKPSEQGG LKEVVAKLNGKSVFKVLKFESGVHRVQRVPETESQGRIHTSTCTVAVLPEVEEVQDIS IDKNDLRVDTFRASGAGGQHVNKTDSAVRLTHIPSGLVVECQDGRSQHKNKEKAMSLL AAKLKQQEIDDQQESIASERKILVGTGDRSEKIRTYNFPQGRMTDHRIKLTQHNLDQI MDGDIKSICDALLAENQLAMLSQLESE" gene 114467..115276 /gene="prmC" /locus_tag="NT01SARS_0130" CDS 114467..115276 /gene="prmC" /locus_tag="NT01SARS_0130" /EC_number="2.1.1.-" /note="identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534" /codon_start=1 /transl_table=11 /product="protein-(glutamine-N5) methyltransferase, release factor-specific" /protein_id="EJP71655.1" /translation="MSKTLGQYKILFDGLNIHEELNFFLKEKLKFNDQDTLINNERIL TKHQQNLIEQFLEQKKQGVPLDYILNSTDFYENRFYVDERVLIPRPETEILVDYVNNH LSSRTKVLDAGTGSGCIGISIALKNPSLNVYGSDHSVDALNVALINKNILNVNNFSLV HADWLSSFKKASFDLIVSNPPYIADQDPHLENLQHEPNKALVAKDYGLRDIRLIIEQS TEVLKRGGLLILEHGYQQQEEVENIFKKNHFSNVSNLKDFQELPRITLGTF" gene complement(115283..116737) /locus_tag="NT01SARS_0131" CDS complement(115283..116737) /locus_tag="NT01SARS_0131" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71656.1" /translation="MKSLNNIGFENTYANELNAICERCSPTSFNKSEILLRNYSLAAE LGIDESFLDSKECLNIFSGRIVLENSIPIAQAYSGHQYGNFNPQMGDGRAILLGEINQ KDIQLKGSGQTPFSKRGDGKSALGPVLREYVISEFMNSVNIPTTRSLMAIKSNENVFR DEETPGGILARVANSHIRIGTFEYVSYFKPNSLETLADYVIKRHYPELSDADNKYISL FAAICDRQSFLISKWMGVGFVHGVMNTDNMLVSGETIDYGPCAFMDEYNPSIYFSSID KHGRYSYKNQPAIMIWNLSKLAEAFIPLVDKNKEKAVIELSEVLNLAMPTYQEYFYIE MSKKFGLKNVDQEVMNLVNNYLKILMDNSVDFVLSFRDLGKLLSDNKKIDDTVFKNVK NFNNWYFEFLNLLSLKKLTKLKVSKTMDSYNPCYIPRNHLVEDAIINAVTGDMKKINL IAELLKEPFTEKNGYESYTEPSCSDERYVTYCGT" gene complement(116746..117411) /locus_tag="NT01SARS_0132" CDS complement(116746..117411) /locus_tag="NT01SARS_0132" /note="identified by match to protein family HMM PF00881" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="EJP71657.1" /translation="MNIKEGIEKRFSVRAFTDQVPSIELIKEILKTAGSAPSGGNIQP WKVYVLNENAKKSLSEKTLHNFDNGVQEEIEYEIYPKPLADEYKKRRYECGADMYNAL SIKEDDLDSRFKQIRENYKFFGAPIGMIVTIDRSFGKNGWGHVGMFLENLWLSAIHHG LGICLQESWSIYPKTVKEFTKHPDNEIVWCGVAIGFEDSSHPINQYRTKREELSSFVK FID" gene 117479..119095 /locus_tag="NT01SARS_0133" CDS 117479..119095 /locus_tag="NT01SARS_0133" /note="identified by match to protein family HMM PF00501" /codon_start=1 /transl_table=11 /product="medium-chain-fatty-acid--CoA ligase" /protein_id="EJP71658.1" /translation="MIGDMQTWTPNVAGIIEHAREIHPKTEIISRLVSGEIHRSNYEN VCIRARKLASALEKDGIQNGDVVATLALNTYRHLEMYYGISGMGAVTHTLNFRLHPEQ AVYIINHAEDKMIFVELPFVPILEALQDNLKTVEKYVVLCEVEEMPKTSLKNAISYEE YIEDGDENYKWPNLADDAACALCYTSGTTGNPKGVLYSHKSNIIHAQASLTALTIQSD DSILMVVPLFHVLAWGIPYFGAMNGLKLVMPGMQMEGEPLYELIDQEDVTLAFGVPTI WMGLLAYCRENNKILTSVRNTIIGGSALSLATLQEFDEVHDVNVIHAWGMTEMSPLGT TNVPTQEMKNMPKEEKYAIQLKQGRPIYGVELKVVDDQGNELPKDGKSQGHLMVRGPW ILQKYFKAEKDAVDADGWFDTGDISVLDEDGYMTIKDRAKDVIKSGGEWISSIDLENA AFGHPEIAEACVVGIPHPKWDERPMLFVVTNSGDPIEKDSIIEFLTDKVAKWWLPDEI VFLKELPHGATGKLQKFELREEYNNYYMEQ" gene 119097..119558 /locus_tag="NT01SARS_0134" CDS 119097..119558 /locus_tag="NT01SARS_0134" /note="identified by match to protein family HMM PF01575" /codon_start=1 /transl_table=11 /product="nodulation protein N" /protein_id="EJP71659.1" /translation="MMKVINPSEIDSVIGTEVGVSDWVLIDQDRINKFADATMDHQFI HVDPEQATPVFGSTIAHGFLSLSLVAGIPFDQEIGLVLEGTKMGLNYGLDKVRFLSPV PVDSEVRIRMKCIDISEKNPGQYLAKTEVTMEIKGIEKPAFVAETLSMFVL" gene complement(119561..120988) /locus_tag="NT01SARS_0135" CDS complement(119561..120988) /locus_tag="NT01SARS_0135" /note="identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133" /codon_start=1 /transl_table=11 /product="aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B" /protein_id="EJP71660.1" /translation="MSWETVIGLEIHVQLSTKSKLFSGGSTEFGAEANTHVDLIDMGL PGVLPVANKEAFYKAIRFGLATGAKINQTSSFDRKNYFYPDLPKGYQITQMTKPIVEK GSIKIYLDGSEKVINITRAHLEEDAGKSIHDLFDGETGVDLNRAGTPLLEIVSEPEIS NAKEAVAYFKAIRQLVTFLDICDGNMAEGSMRCDVNVSIKKNDSSELGTRAELKNINS FKFIEKAINFEIDRQTKLLENGESVVQETRLYDSEKNETRSMRSKEEANDYRYFPCPD LLPVVISDKELIEIKENLPELPEEKEKRYVEDIGLDKSEAVIISSSKAMANMFEEASA KTNDAKLVAKWLVGDVSALLNKDNIEIDESKLSAENFGKLIERITDNTISGKIAKSVL EDIWENGSDVDKVIETKGLVQIQDESILEDIAQKVIQSNPDQVSAYLNGKDKLFGFFV GQVMKETQGKANPKSVNDILRRLLK" gene complement(120988..122436) /locus_tag="NT01SARS_0136" CDS complement(120988..122436) /locus_tag="NT01SARS_0136" /note="identified by match to protein family HMM PF01425; match to protein family HMM TIGR00132" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(Gln) amidotransferase subunit A" /protein_id="EJP71661.1" /translation="MTIKYKSVKEFKEMISQKEISNKEIIQEVFNLIDDNKGLNAFIT LNEENSIKKAEYFDNNPSELSLAGIPIAQKDLFCTKGLRTTCGSNILNNFVPPYTATV IENLENAGCISVGKTNMDEFAMGSSNETSFFGNVHNPWGENLVPGGSSGGAAAAVAAG IVPAASGTDTGGSIRQPASLCGITGIKPTYGRISRWGMIAFASSLDQAGPMARTAEDC AILLNEMCSHDEKDTTSLDETVPNFQENLNKPLKGKKIGIVKDLDLSNLDNDVVEVFE NSLKEFQSLGADLVDISLPNLALSVPTYYVVAPAECSSNLSRFDGVKFGRRSEHTKDL EELYVNTRSEGFGDEVKRRILIGSYVLSAGYYDAYYKKAQQVRRLIKNDFENAFSNVD VIMTPTTRGPAFEIGSKGNDPIQMYLEDLFTISANLAGLPALSLPNGFIDNKPIGLQI IGNFLDESSILNFAHMYQSETNWHMHTPEGIK" gene complement(122433..122714) /gene="gatC" /locus_tag="NT01SARS_0137" CDS complement(122433..122714) /gene="gatC" /locus_tag="NT01SARS_0137" /EC_number="6.3.5.-" /note="identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(Gln) amidotransferase, C subunit" /protein_id="EJP71662.1" /translation="MDKKTVTTISYLSRLKIDDEKEEKIIEDLDNIIKFVDQLNIIDT SDVAPLTNPLEKTAKTRKDIVTAKNLKKDLLEVAPSSNDDYFLVPRVVE" gene 122797..123846 /locus_tag="NT01SARS_0138" CDS 122797..123846 /locus_tag="NT01SARS_0138" /note="identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904" /codon_start=1 /transl_table=11 /product="Rod shape-determining protein MreB" /protein_id="EJP71663.1" /translation="MKFNLFKMVGGYFSNDLSIDLGTANTLIYTKDVGIVLNEPSVVA IRESRGQKTVVAVGTEAKKMLGRTPGNIKATRPLSEGVIADFQVTEKMLQHFIAKVHE KLFIKPSPRVLVCVPCRSTQVERRAIRESVLGAGARDVKLIEEPMAAAIGAGLPVEEA SGNMVVDIGGGTSEIAILSLNGVVYSESVKIGGDKMDEAITSWIRRNYGCVIGESTAE KIKYTIGCATAESEKLEMSITGRNLAEGIPETFAINSEQIFEAMKDPLFGMVRAIRNA LELSPPELAADIAERGIVLTGGGALMRDLDKLISSSTGIPVIVAEDPLTCVARGGGQA LEIMDKYNIDLLSSE" gene 123852..124688 /locus_tag="NT01SARS_0139" CDS 123852..124688 /locus_tag="NT01SARS_0139" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71664.1" /translation="MARNTPTPGQKISYFLVILFGVFILYLDINTNTFNGIKNGFSSF KISSSYLLKKYSIDQITELSRLFKSKDYLSKENKMLKEQLDKSYLDNFIISREKSFFY DHSSLNKIINGNKFIESYSLAKLKSFNPNIFNCCDKHRMYIEIIQNTNKDIKEGAVFN ETGIIGQVVNNKSFYEVMLLTDTKSSIPLTNSKGDFYCNASGSGASDYITCSYSQLVW LDDHELGEKFFSSGLGGIYPKGIEIGNLESIKIVDTSTTLLTIKLISNPLHSNLFGVI KL" gene 124685..125161 /gene="mreD" /locus_tag="NT01SARS_0140" CDS 124685..125161 /gene="mreD" /locus_tag="NT01SARS_0140" /note="identified by match to protein family HMM TIGR03426" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreD" /protein_id="EJP71665.1" /translation="MMYSLLKKLFLIIFICYVEYILAPGLIKLNIVLPLTFLAYSFYM YRSKNNIGPVEAFCTGLFIDLISNTFFGHNAVLFCFASYLINTYANAFKLFSYLQVCI FFGVSASAYVGFTQIIINLYNFSYLTLFVSTLFNILLCISIAILSVYFPSLTNRKI" gene 125165..127516 /locus_tag="NT01SARS_0142" CDS 125165..127516 /locus_tag="NT01SARS_0142" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71666.1" /translation="MNLLLRVSKLFLFILIMIFFIFILTYSIFIFKPDLALNTSNKLG LTDYKINFEEIDSNKNLLKPTYSVKNIKVYDKNSNVLMIIESLKIGINVLRSLSSDLI VINELEIVNFTNQIDSKSEGFFLTNVNIEINDLLIKSNDLNLNVSKSYISMKIDDISV VSLEGSINESYFDKLELFLPNSSQKLFFLGTFYLNEKDIINRNLINLDSFDSAKINLI VESNGTLDLENLTIESFNKYNFYESSLETESKFLIDAINLELFEGDDENLYGKFKANI PDQIIQGSMYVSDSVIIKTNLEIDLSQIINDQRYFGIKGKETFKTTLEIKDNVSSLSL ESDLTNTEFNSEIDEISKNIKDKLFTTIKIRNLSNPSYLIKNKKFEAFFDNKNNGYFD FGNGFSEETVSSKQELDGFYIYLNLKDINIENLLVDSSGNNTSNLKSIFIKSKTLNLF NNTYNNQTLKILFNENETYANFYGKNLNGSIRIDNSGFTRIDVFDTKFEFNGVSLANT DISLNDNINIRFVGKNIQTYDDVFQDVDFYFLRNKKITTIDNINIRSKNFYIGPYAKK KAYISFNRNEDLYKVRGSYEINTDNFPFKDSINYDFGYLSSDLNIQWNSLSELRNLEG EIKFLIKDLESKASLPDSAFLRALRIFNLNAIVEGINSDSLLGSRNLIIKRAEGDFYV GQNRALINKPIKLETAEAKMEWMGEVLKDNVGILNELNLDLEMRLKLSENIPWYAAVF GGIPALAGGFIFENIVDERLDDASTFQFKVTGNITDPKIERLN" gene complement(127508..128848) /gene="mgtE" /locus_tag="NT01SARS_0141" CDS complement(127508..128848) /gene="mgtE" /locus_tag="NT01SARS_0141" /note="identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400" /codon_start=1 /transl_table=11 /product="magnesium transporter" /protein_id="EJP71667.1" /translation="MDNVESKNNLETIIDESSNLSLNQIRRLLNKMSSSEIAHALESS PPKQRNLLFSLLKTEEEGDVLFELGEEIQQDLISSISNEELAEAVKELELDEIVDILQ NLPEERMKKILSGMSQIDRKRIEVGLKFPENTAGGLLNTDVISVRPENSIEVVTNYLR GQKKLPENTDKIFVVNNDNEYLGELTISNIITSNPSMVVREIMETSSMPLNVNMDDKD VATTFERNDLISSAVVDDNGKLIGRITIDDVVDVIREDADQNLLGMAGVAEDTFAPPG RAAKSRVFWLSMNLVTAFIAASAINLFQDALDKIVYLAVLMPIVASMGGVAATQTLTI VLRGLTLEQINTSNIRWLFKRELAVSIINGIVLSVLVGASTYLWFQDKMLAVLISCAL VINLVSSVIAGILVPLILRKFNQDPAIGGSVVVTTFTDVIGFISFLGLATLYLI" gene complement(128870..130135) /gene="rpoN" /locus_tag="NT01SARS_0143" CDS complement(128870..130135) /gene="rpoN" /locus_tag="NT01SARS_0143" /note="identified by match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma-54 factor" /protein_id="EJP71668.1" /translation="MGIALSQKIQQSQKVTLTPSLKKSIDLLQLSRYELINKIHQEIE DNPFIEKEEDYDITSSIDEEFSYEIESKKTLRDSLLDQINDLNIDSKSLKISKLIIDS IDEAGKLWEEIDELKDIASFECNVDEIESVLLNIIHKLSPYGIGYRNHKECIEIQLRN KNISKKTFKICMLIILNESMDDLDKIQMDFIENGGTIESFESALKEIKKCDLSPGLNF EESKYIYPDLKIVVENNNSKIKFINNDFPKIKIDEDLTKNIKKDLKKNKNSEISEKIS EARWLLSSVKKRNDTVLKVGEYIFSKQINFFKNNPIKIETLTNKEISEELGLHPSTVS RILKNKYIDTPKGIMPLKSLMVSSVSKSRNITSIQLMNLIKDIIKHENKPKSDKQITI ELNKRGFNLARRTITKYRKRNNIPSSRDR" gene complement(130135..130848) /locus_tag="NT01SARS_0144" CDS complement(130135..130848) /locus_tag="NT01SARS_0144" /note="identified by match to protein family HMM PF00005" /codon_start=1 /transl_table=11 /product="lipopolysaccharide ABC transporter, ATP-binding protein LptB" /protein_id="EJP71669.1" /translation="MLKVNSVSKIIKDKKILNGISFSLNFGQICGLLGPNGAGKTTSF YIIAGLTKSDSGQIEFIDQDITNMPMHKRSNLGIKYLPQEPSIFQNLTVYENLFGLAE LTFKNNNDIKTTVEKLLDEFDLLEIRDLKGRQLSGGQRRKVEIARTLVSNPKMILLDE PFAGIDPIAIEEIKKVLNTLKNKGIGILITDHNVRETLEICDHAAIINNGEIIAHGTK ENLISNQVVKDVYLGNMYN" gene complement(130848..131258) /locus_tag="NT01SARS_0145" CDS complement(130848..131258) /locus_tag="NT01SARS_0145" /note="identified by match to protein family HMM PF03968" /codon_start=1 /transl_table=11 /product="putative cell envelope biogenesis YhbN" /protein_id="EJP71670.1" /translation="MKIRYLLILFSVISLLNHADINEKINISSDIVEFIRSENSIAFK NNVEIRSEFINISATDATYNNKDDVIYVSGNPSLITSNKDDSFFNGKANKIIIFNDEK VHLIGDATMFYENINISSDKIVFNPQTGSLLSEK" gene complement(131259..132224) /gene="kdsD" /locus_tag="NT01SARS_0146" CDS complement(131259..132224) /gene="kdsD" /locus_tag="NT01SARS_0146" /EC_number="5.3.1.13" /note="identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393" /codon_start=1 /transl_table=11 /product="arabinose 5-phosphate isomerase" /protein_id="EJP71671.1" /translation="MKKYNYIASAKRTLKIESDSIKSISNQLDTSFTSLCECIISSKG ALIVMGVGKSGHIGQKIAATLSSTGTASIFIHPTEAAHGDMGLINKKDIVLLISNSGE TDEIINILPSLKRHAKKVASITGNKTSSISKRTDISIVIKSGKEACPLDLAPTSSTTN TLALGDALAIALLEAKGFSKKDFAYSHPAGKLGKKLITRVEDLMHTGKSVPKVSQSMI LDKALIEMTKKSLGITLVLNKNKVVGIFTDGDLRRCINKKVDIQSTKISDVMTKNFKT IDASDLAVNAAEIMEKNKIFTLVVLKKKSYAGVITMHDLIQARIL" gene 132272..132895 /locus_tag="NT01SARS_0147" CDS 132272..132895 /locus_tag="NT01SARS_0147" /note="identified by match to protein family HMM PF05494" /codon_start=1 /transl_table=11 /product="toluene tolerance family protein" /protein_id="EJP71672.1" /translation="MLNILKKNFLVFFLLINSLYILSDEDPYIFIDENAQKMVRVLTE DSSLFETDRALYEDKIKEIFEPMIDFRRVAASVMGKKYYLLATKEERAEFVLIFKDSL LDTYAETLAQWGDSTITTEFPKNKEELSKNAEVKQTLDTGTSKYPISYKLRKSKDGWK IVNIIINGVNLGLTFRNQFQALAVSHNENISDTLRNWVSDAGTAGIT" gene 132896..133111 /locus_tag="NT01SARS_0148" CDS 132896..133111 /locus_tag="NT01SARS_0148" /codon_start=1 /transl_table=11 /product="BolA/YrbA family protein" /protein_id="EJP71673.1" /translation="MEEDIKKIIENNIPDSICVFDGDSCNLKLTVTSKLFEDMSLIDQ HKIIMKLLENHFQSGELHALSLETRSN" gene 133114..134373 /gene="murA" /locus_tag="NT01SARS_0150" CDS 133114..134373 /gene="murA" /locus_tag="NT01SARS_0150" /EC_number="2.5.1.7" /note="identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 1-carboxyvinyltransferase" /protein_id="EJP71674.1" /translation="MEKLLIKGGKSLSGKISCSGAKNAALPMIAATILCDDKVVLKNL PYLQDITTMFELLGSMGSEILLDENMDFTISSANLKDIEARYELVKTMRASILVLGPL LSKYGKARIALPGGCAIGSRPVNFHLDALKQMGASITLRNGYIEANASQLNGANIKFE GVTVTGTENLMMAATLAKGQTILTNVAKEPEIADLADMLNSMGAKISGAGTDKIVIDG VDKLKGTIFDIPADRIEAGTYLVAAAVTKGSITIDGINPNRLMKVIDKLRAAGAEIDY NEDSISINMKLEFPNPVDITTAPFPEFPTDMQAQFSVINAISSGTANIYETVFENRFM HILELNRMGCDISVKGNHAVIQGVKSIYGAQVMATDLRASASLILAGLCAEGETVVDR IYHIDRGYERIEEKLNYLGANIIRLPS" gene complement(134370..135353) /locus_tag="NT01SARS_0149" CDS complement(134370..135353) /locus_tag="NT01SARS_0149" /note="identified by match to protein family HMM PF00089" /codon_start=1 /transl_table=11 /product="peptidase Do" /protein_id="EJP71675.1" /translation="MKNIQTLGINYIFVILFTVALSWYFISDNNNKLVSAADKSISSV VTISSSTQSNLSYSNNKSGIGSGVIFSKEGYIVTNLHILNSKNINVQLNNGKNYPANI IGIDKNADIAVLKISADENLNPINIANSDNLKIGDKVLAIGNPYGIGISVSNGIVSAT GRDYGNPYLQLIQTDAAINPGNSGGALINENGNLIGINSKIFSSTGAYQGIGFAIPSN LVVQIATQLIRFGEVKSLWIGNFRVSRVDLKINDKYSSGLRIVEMEKIGPLFDRGIQI NDIITKINDQDSNWNNLIQSLRYATLGESLKLEFYTVSNEFKTYEFKYSGD" gene 135355..136395 /locus_tag="NT01SARS_0151" CDS 135355..136395 /locus_tag="NT01SARS_0151" /note="identified by match to protein family HMM PF03969" /codon_start=1 /transl_table=11 /product="ATPase" /protein_id="EJP71676.1" /translation="MLNTQNIIDKLKNQGIEADTSQIKLITELVDLNIKKKGFLETYL TKNIKKSGIYIWGDVGRGKTLVSKTYLQSITNKNVKNFHYIDLMKYVHKKLTEYAGKK NPLEIVKNDLCKECELIFIDEFQVEDIADAMIIGNLLLGIINKGLILILTSNAHPNDL YKDGLQRKKFLDAIKILTDKMKVFHLDQGIDYRSLNIINLEIDDKNSSDKEIEKIIKE NFESEDFVNTELKINDRNFECKQVVNNMLWIDFNAFFKQPTGSNDYIHICDKFDWIFV SGFIECDDDSADMIRRFISFIDISYKEKTKVKFFFKNLPISKIYNGSKLGVIWDRCES RLSEMNSFNHLD" gene 136477..136911 /gene="rplM" /locus_tag="NT01SARS_0152" CDS 136477..136911 /gene="rplM" /locus_tag="NT01SARS_0152" /note="identified by match to protein family HMM PF00572; match to protein family HMM TIGR01066" /codon_start=1 /transl_table=11 /product="ribosomal protein L13" /protein_id="EJP71677.1" /translation="MKTYSLKKEEVNRDWFVLDVTDMVLGRVATKIADRIRGKDKPTF TPHTDGGDYVIVINAEKIKVTGSKYENKKYYSHSLYPGGLKTKTFKELVDKNPERIIE EAVKGMLPKNKLGKAIFKKLKVFSGPIHDHDSQQPKEWNPSI" gene 136908..137300 /gene="rpsI" /locus_tag="NT01SARS_0153" CDS 136908..137300 /gene="rpsI" /locus_tag="NT01SARS_0153" /note="identified by match to protein family HMM PF00380" /codon_start=1 /transl_table=11 /product="ribosomal protein S9" /protein_id="EJP71678.1" /translation="MSADIFYATGRRKTSSARVYLKSGKGNITVNNRKLDEYFGRKVA QMLVMQPLELVDLSGKVDLDVKVKGGGSFGQAGAIRHGISRALTSYDEELRPQLKKAG LLTRDPRRVERKKAGLVKARKSKQFSKR" gene 137398..137979 /gene="petA" /locus_tag="NT01SARS_0154" CDS 137398..137979 /gene="petA" /locus_tag="NT01SARS_0154" /EC_number="1.10.2.2" /note="identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416" /codon_start=1 /transl_table=11 /product="ubiquinol-cytochrome c reductase, iron-sulfur subunit" /protein_id="EJP71679.1" /translation="MQEKDKTRRKVLIGLTSAVGLSGIPFAATPFIAAWNPSAKAKAA GAPVKLDVSKMQFGQQIQVSWRKQPVFIVRHTEESIANLELGVTKLADPNSDQIEEPY KGLNPSRSKSPEYSVFSGVCTHLGCAPKYFPEVEPKPWDATWNGGFFCPCHGSMFDIV GRVFKGVPAPTNLIVPPHMFEGSILTIGEDKEL" gene 137981..139198 /locus_tag="NT01SARS_0155" CDS 137981..139198 /locus_tag="NT01SARS_0155" /note="identified by match to protein family HMM PF00032; match to protein family HMM PF00033" /codon_start=1 /transl_table=11 /product="cytochrome b" /protein_id="EJP71680.1" /translation="MTEIAGKLFTWINTRLPIANTFERHLSKHPVPSKVNFWYLFGAL AAVTLIIQIVTGIWLIMPYSNTEEQAFSSIEYIMRDVDYGWVIRYMHTTGASLFFAVV YLHMFRGLLYGSYQKPKELVWIFGCTIYLAMMAEGFLGYVLPYGQMSYWGAQVIISLF GAIPYIGESLELWVRGDYYISGITVSRFFALHVVALPLVLIALVFLHLVALHEVGAGN PEGVDIEEHLDDDGVPLDSVPFFPYKVLNALVAIGVFMTVFSIIMFFFPEGGGYFIEM ANFQEANPLVTPDHIAPVWYYAPFYTMLRAIPDPLGGLIVMAAAVAIFFIVPWLDRSN VASIRYKGIYSKIAITMFGVSFLTLGYLGTVGVTEVRKTMSVICTVMYFAYFLLMPIY TKYETTKEVPDRL" gene 139195..140031 /locus_tag="NT01SARS_0156" CDS 139195..140031 /locus_tag="NT01SARS_0156" /codon_start=1 /transl_table=11 /product="cytochrome c1" /protein_id="EJP71681.1" /translation="MSTGNIKKVLFKPFLFILFLIPLFSVFIGAAEGGPCKDYGECDD FKYSLNDFESLQRGAATYINYCYGCHSLKYSRWGRVAKDLKIPEDIFFENLVFDKSIK PGDLMIGSMPAEESAKWFGVAPPDLTLVSRYKGDDWIYSYLRAYYEDSSKQYGVNNLV YPGTAMPNVLLALQGNQRLVCKDVPIIARNGGQKRDENGITITEEKCGFLEVENGTGK LSKEEFDSLIYDLTNFLVYVGEPAKATRERIGWYVVFYFLIFTALSSLLYREFHKDYN KH" gene 140040..140654 /locus_tag="NT01SARS_0158" CDS 140040..140654 /locus_tag="NT01SARS_0158" /note="identified by match to protein family HMM PF00043; match to protein family HMM PF02798" /codon_start=1 /transl_table=11 /product="stringent starvation protein A" /protein_id="EJP71682.1" /translation="MILYSDRDDHYSQRVRIVLAEKDISAEINEAKPDETPDEILSIS PYHKLPILVDRDLAIHDPSVMMEYLDERFPHPPLLPVYPVARANSRTLMLRIDREWCP LVDSLILGQKPEKELMKLREELLHEISSIAPTFKEFSFFMSDEFTLVDCCFAPILWRL PSIGIKLPVNRHLKPLIDYQNKVFERPGFLDSLSSLERDLKSDQ" gene complement(140638..141723) /locus_tag="NT01SARS_0157" CDS complement(140638..141723) /locus_tag="NT01SARS_0157" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71683.1" /translation="MPNDLKNDLDTKDSINNTFISNQLSKTNNIELLKALENGFKLID LSDDEINIIINSIQNNEIKKSYIKKVENMLNNNKKMSLNKLQLSIVASERNKEIILET LLENNSFFSIVMNENDATFIEDNVLNSNLKFYCNSFIKEQENILEKKIFVDSDYKKTL IIYSDRFSKKVTELKLKYPSEIFLRVNDDNYESSIKKVLEIDESNLRGEIINKFINNR QIEHTPRIRQDIGKIYFLLDYDQGKSIAPLLKSYVVGIKIFSTSEIFHNADNIRDLAD FEEILMPVSKDFILKTGNQKYDRLKQGIEKLVLSDFITIEKIYQNNLFKNDILLNTGL NSVSKNKCLTRDMGMWKIDLSEVIGRS" gene 141803..142618 /locus_tag="NT01SARS_0159" CDS 141803..142618 /locus_tag="NT01SARS_0159" /note="identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C/tetrapyrrole methyltransferase" /protein_id="EJP71684.1" /translation="MLSLISTPIGNLDDISLRAIDVIKSADFIYTEDTRSFKKILDSI ECKKKCKSFHEHNEDIICKEIIKHLKNKKHVVLTCEAGTPAISDPGYKLIRECLNLNL KYTLIPGPSSLINAVVLSGLPTDKFSFYGFIPKKNNAQKKLFQKVSNDEKTAIMFESV KRLRKTIISISKHLDNNRHISVCREMTKIHEQIVQGNCEDLLKKIDDGSLPLKGEIVL VIEGNITNNINIKLDNKVKDAFLEKLSISDAAKLLSLVTGQSRQDIYKFLNNK" gene 142668..142952 /gene="rnpB" /locus_tag="NT01SARS_0160" ncRNA 142668..142952 /ncRNA_class="RNase_P_RNA" /gene="rnpB" /locus_tag="NT01SARS_0160" /product="Bacterial RNase P class A" gene 143059..143526 /locus_tag="NT01SARS_0161" CDS 143059..143526 /locus_tag="NT01SARS_0161" /note="identified by match to protein family HMM PF02381" /codon_start=1 /transl_table=11 /product="protein MraZ" /protein_id="EJP71685.1" /translation="MFGFNTLSIDKKGRIAIPARYREDLRNQNHNQIVVTKDPQYPSL KIYSYSEWNKISLKLQSLQGLDPIVRNLQWTILGNAHQSDIDIDGRMLVRIPSDLQKY SEITNENQVALVGMGNKFEIWNIQNWEMRQTGGSMSTEILDVVLPESIKEMSF" gene 143539..144648 /gene="ftsZ" /locus_tag="NT01SARS_0162" CDS 143539..144648 /gene="ftsZ" /locus_tag="NT01SARS_0162" /note="identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065" /codon_start=1 /transl_table=11 /product="cell division protein FtsZ" /protein_id="EJP71686.1" /translation="MDFEVIGQAVENAKIKVVGVGGGGGNAVIHMINHNIEGVDFICA NTDTQALSTADGAITLKLGNGLTKGLGAGADPDIGRRAAESDRNAIEELLTGADMIFI TAGMGGGTGTGAAPVIASIAKEIGALTVAVVTKPFRFEGKKRMGAAEKGLAALVEEVD SLVTIPNQKLYEILGEDTPMQDAFAKADDVLRGAVQGISDIIMKKGHINVDFADVKTV MSEKGIAMMGTGRASGKNRAEVAGTMAVKSELLEDINLKNARGVLVNITAKKPTLGDQ TEVADIVDEIVSEDANIIYGLVYDDTFGDDLQVTIVATGVDQRAPALVIDNEPSMTLN PVGLDKDKTSQKVGTSSAEAIDFLDVPTFMRKQVD" gene 144650..145543 /gene="mraW" /locus_tag="NT01SARS_0163" CDS 144650..145543 /gene="mraW" /locus_tag="NT01SARS_0163" /EC_number="2.1.1.-" /note="identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006" /codon_start=1 /transl_table=11 /product="S-adenosyl-methyltransferase MraW" /protein_id="EJP71687.1" /translation="MLHSPVLLEESVKFLIQNINGTYIDCTFGRGGHSNLILDKISKK ASLYSYDRDPEAVHYASSIKNNNFKIFHDSFSNISSYHKEQSVDGIIYDLGTCSTHLD NAERGFSFNKDGPLDMRFDNSNGITVSDWINKAGKKEIMDVLYTFGDENHGKLISEAI ISHREKYLIDTTSKLAKIIEEIYPDKKTKIHPATKSFQAFRIFINNELDEFKKSLQSA KKIIKTNGIIVTIAFHSLEDNIIKNFFKPSIKSFPKDIPLNNEQESFFDCIAKKVRPS DFEIKNNPRSRSAIMRVFKKL" gene 145618..145815 /locus_tag="NT01SARS_0164" CDS 145618..145815 /locus_tag="NT01SARS_0164" /codon_start=1 /transl_table=11 /product="putative cell division protein FtsL" /protein_id="EJP71688.1" /translation="MSWEIATLHNNFENLQIEYDALKDLNLKLTTQFYIENSPANIEK TAKEELGMIKKQPKKIIQNEK" gene 145805..147424 /locus_tag="NT01SARS_0165" CDS 145805..147424 /locus_tag="NT01SARS_0165" /note="identified by match to protein family HMM PF00905; match to protein family HMM PF03717" /codon_start=1 /transl_table=11 /product="putative penicillin-binding protein 2" /protein_id="EJP71689.1" /translation="MRNKVKILNWRFFLICACISFSILAVIYKVFSIQIKESNFLQNE GNKRYVKYKNISPVRGSIFDKNNFPLAVTLVNYDLYALRGFKKTNLLKLAENIEIEFN DVDQVFVKKTLLKKNISKKEINKLKKLNIKNFEIETRHSRHYPLGEQIAPLIGFYGTD GAQEGLEKSYDSILSGVPGKKKYFKNAKQEIFSQPIEIEKAVQGKDIHLTIDATLQFF AYKYLVEGIRNNKAKAGTVVILDNKKGDVLAMASYPSYNPNNPERKIQKNRVLVDAYE LGSVLKPIMISKAIDLEIFNPEEYIEIPRRLNLDDKIIVDTKNHEKLTPKEIISVSSQ IGASKIAIAIGYDELKQNYYDFGFTKPVSLNFPSTAFGYMNIKEKVADKELASLGYGY GITVSPFQIASAYSVFANKGFRKDFKIIQSDETTLEKIITEESSIHILDALKKVVKEG TGKAAEVRGFSEGGKTGTVHQIVRGSGYAEDLYRASFVGIAPLSEESLTIFVSIDDPG LNAYSGGSVAAPIFAKIAENSLNYMGYFEDE" gene 147417..148883 /locus_tag="NT01SARS_0166" CDS 147417..148883 /locus_tag="NT01SARS_0166" /note="identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase" /protein_id="EJP71690.1" /translation="MNELEQIFGIQLPKNIKISSVVNTTDKVIKDSIFFGLQGTRVHG SRYADKALELGASLVIHNDPDFISKHKNIFYIKDLNDKLIMFLNAFYNIDINSNNFYA FTGTNGKTSAAYLTHQLLQKMNYDSVYIGTLGVKFNKEEIDTSFSKKTTPDIFELFEI VNSINCKMDSINVCMELSSHALDQKRIDKINWFYSLSIMNIRSDHLDYHLNIDAYIDS KFEIFRLNSSIKLIDAELLDHSKSYDFINNNHSLISISNTNNFSDIFFNIEKLSLNKC IFSIQINNPTICQKHEKHKKYKFSCKIFPEYNISNLVFAICSIGFDEFSENEINDLSY LKLPKGRLELIKNIPANVIIDYAHNEHSFHTVLSSLKEFFENLIVVYGCGGNRDKSKR SKMLSIATENCAQVIFTSDNSRTESFNNILADSKKGNDLDKVISIEDRKKAIIHGTEL IKEKDCLLILGKGHEVTQDIGGEIKHFSDHEVINEIYK" gene 148867..150210 /locus_tag="NT01SARS_0167" CDS 148867..150210 /locus_tag="NT01SARS_0167" /note="identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase" /protein_id="EJP71691.1" /translation="MRFINNTSDLSKYLGIRIENQALIKKISTDTRTIKQGSLFIAIK GKNFNGNDYVQDAFKKGAVLALVDDLRFKDSKNKKIIYVKNTIESLTKIGKNIIKDFE GKVIAITGSNGKTSTTSIVADSLRKVSTTIENFNNEIGVPLSLINASPKSDYLVLEIG ASKFNDIDHLSKILKPDIGIITNIGNSHLEELKNTNGVLRVKSEIITHIKKNGFLVVP NDNEKHLSFWKKVRKDINIVTFGKSKSADFYSYKADLNSDGANFYISSKNLVDSIKIK TTLEGEHNIMNILASCACHFCLNQDLDLFAKKINLNKLTIKRQRKTKWLNGSTLIDDT YNANPDSTKKSIDLLCNYNNKKKILILGDMLELGKFKKNLHKEIGIYAKQKGIDNFLG FGNLTKVAVDAFGKNGFFFNGEKDLKAYIKDNISSKDIILIKGSRGMKMERFIDV" gene 150203..151288 /gene="mraY" /locus_tag="NT01SARS_0168" CDS 150203..151288 /gene="mraY" /locus_tag="NT01SARS_0168" /EC_number="2.7.8.13" /note="identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445" /codon_start=1 /transl_table=11 /product="phospho-N-acetylmuramoyl-pentapeptide- transferase" /protein_id="EJP71692.1" /translation="MFEYLGTVLVSVDPGFDVLRYLTVRTIGGTITALIISILLGPVI INFLKSMQFEQFVRKEGPKSHHKKGGTPTMGGLIILSSLVISTLLWADLGNRYIWVVL AVTVGFSIIGFFDDYIKIKNKSSDGLTSKQKLIFQSLISILSISYLYYSAEILPETSF IVPFFKDLIIPMSPFLFIFIGTFVLVGSSNAVNLTDGLDGLAILPSVLIGGALGLIAY AMGNNLIAEYLYLPHLPLSGELIVFCGALIGSGIGFLWYNTYPAQVFMGDIGSLALGA ILGIIAIILRHELVFAIMAGVFVIETLSVAIQVISYKTRGKRVFLMAPIHHHYELKGL AEPKIIVRFWIITLVLILIALATLKLR" gene 151295..152329 /locus_tag="NT01SARS_0169" CDS 151295..152329 /locus_tag="NT01SARS_0169" /note="identified by match to protein family HMM PF08245" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase" /protein_id="EJP71693.1" /translation="MKSLIYGYGKTGKSFARFLESKKYKFDIYDDNLPKYSKKIDLKK YNQILCSPGVPKNIFEKIRNINKNVLTDLDIFFQEDTSIKIGITGTNRKSTTAFHLYQ LFEKFEPANLIGNIGNPMLDCINTKKYSIIELSSFQLDKMITNKLDFGILLNIQTDHL DYHGNFESYKLAKERILDAKKSISFEDNPYDLFEWITGQKSSEINLKNLPYRFQHISK NIINDSKSTNYHSLSYAVKRANEIFLNNGYILIVCGSPKKEEFRKIDIKGPDQIYIFG EHAKEIDKCVNNKNKKVFNKLSDVVNHLNKHNQKNVLFSPGYPSGDDFSNFEDRGVAF NKIFGNLNEN" gene 152319..153428 /gene="ftsW" /locus_tag="NT01SARS_0170" CDS 152319..153428 /gene="ftsW" /locus_tag="NT01SARS_0170" /note="identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614" /codon_start=1 /transl_table=11 /product="cell division protein FtsW" /protein_id="EJP71694.1" /translation="MKIDLRDILIIVPVSVLLMFGIIMVTSSSIYIADDLTSNPFHFA QRQVIFIAVGFLAMIFFLVIPSELLYKADWIFMLISILLLALLFVPDVGTSVNGSIRW IRLGPINIQPSEICKFSLILYISGYSVRRMTEINSFRSFLKPLFLLFLISILIMGQPD LGSTAIICILVVGILFYAGISFFQLFLLLLLIGLLGYLAISTSPMRLARVLAFTDPFA ADVVLNAGWQLSNSLISIGQGGWFGVGLGNSFQKSFFLPEAHTDFIFAILIEELGLIG GLFLIMIFLFLFYGLILICLDSFKKNRLFQGYAVFGIFLLLVVQTLFNISVNIGLLPT KGLTLPFISYGGTSIIIMLSLIGIVLRINNENKAI" gene 153432..154475 /locus_tag="NT01SARS_0171" CDS 153432..154475 /locus_tag="NT01SARS_0171" /note="identified by match to protein family HMM PF03033; match to protein family HMM PF04101" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine-N-acetylmuramyl- pyrophosphoryl-undecaprenol, N-acetylglucosamine transferase" /protein_id="EJP71695.1" /translation="MKFLIVAAKTGGHIFPAVAVADEIKKNNFELVFLGTGSSIEEGA YDKFSSVFYKLQMEGFRGKSLLKKLKVIFQVLFNIFKVIKIIKKEKINAMIGFGGFIT VPVGIACYLLNIPIFIHEQNAVMGSANKILSKISKINFLGMRIKNIKNSVHSGNPIRT EFFQSSDLDSEHVNIYITGGSQGADYINENLPKALSKLTNINVKHQCGKNNITKVREL YKKYGVTAEIYDFYENPAEQILWSDFVISRAGALSLSEISSLQRGALMIPLPTAIDNH QFENAKSIVELGMGEIHLQNDSIEKLISKIENIISNQSYVNWKKQRNKDHKYAAKVIT ENIYKFLNRNEKV" gene 154462..155856 /gene="murC" /locus_tag="NT01SARS_0172" CDS 154462..155856 /gene="murC" /locus_tag="NT01SARS_0172" /EC_number="6.3.2.8" /note="identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate--L-alanine ligase" /protein_id="EJP71696.1" /translation="MKKFEKVKNIHFVGIGGAGMIGIARVLLKKGYKVSGSDIDYSND LKKLKNDGAIVYEGHHENNIKDKDLLVVSSAIDSENVELLQAKKDSITIIPRAEMLGS LMIGYESIAVAGSHGKTTTTSMVAKILSVADLSPTYVVGGKVLSTDENSDLGEGKYLV AEADESDGSFIHLQPDVAVITNIDDDHLAHFNNIFENLLDSFIAFCENVPFWGYLVIN GDDKNFQKISSKISRKKITYGTSQNCDYKIVEILSIEGCQKFKIEDSIRKKSHSFQIN LPGRHNVFNAAASIVVAIQEGLDIEAIKKGVLDFSGVGRRYEKHVINIDKEKKFLIDD YGHHPLEIRCNLDAIREEFQDKKILMIFQPHRYTRTAQLYDEFVDVLNRVDSLILLDI YSASEEPIKGITSSALAETIKKQGHKNVLHVKNHDDLLDIIKEKKDLFDVIVTQGAGS ISKVCESIIRRWKI" gene 155844..156761 /locus_tag="NT01SARS_0173" CDS 155844..156761 /locus_tag="NT01SARS_0173" /note="identified by match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205" /codon_start=1 /transl_table=11 /product="D-alanine--D-alanine ligase" /protein_id="EJP71697.1" /translation="MEDINKIAVICGGSSPEREVSINSGNGVKDALLQLGFKSDLIDY SDIQDFNDLYDYELVFIALHGFEGENGELQARLDKMNIIFTGSKSSACSNTWNKNLCK TILNENSINTPNSILLNNLKNCSNNPFDCFEKKFGYKPNLFMKPCEDGSSIDIFKISN DEDYKKAKLNCLNLEREFIFEESIEGREFTVTIIGNKCYPVIEIKTQNDFYDYDAKYI SDDTILDQAKLSDNELNIINDIALRAFHALKCSGWARVDIIQDKNGNFNVIEINTVPG MTSHSCVPKSASFMGLSYQDVIKEILINV" gene 156754..157371 /locus_tag="NT01SARS_0174" CDS 156754..157371 /locus_tag="NT01SARS_0174" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71698.1" /translation="MYKLTFVFFISFLTISVLSDTFDISVNFESGYEFKSQIALAQEI RKLKSKKEIEKLIRNQDWIDEYSLITQPFKNKISISIKNKVPIFAVNGTHFYDDNLNK FNFDYTYGEIIHVEGPVQDFETILKLINLVQSDTFRINKILFSYTNGWDIVSKDTKIR FGKNITNKKLRNFKNTINYLLDIEKIPSIIDLRNKDGVALNYGSK" gene 157358..158581 /gene="ftsA" /locus_tag="NT01SARS_0175" CDS 157358..158581 /gene="ftsA" /locus_tag="NT01SARS_0175" /note="identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174" /codon_start=1 /transl_table=11 /product="cell division protein FtsA" /protein_id="EJP71699.1" /translation="MAVNKNSNLIVGLDIGTSKVVCIVGKYNEESKLEIVALGAYPSS GLKKGVVVNIDATTDAISKAVEQAQSMIEDKIRSVFVGIAGNHIKSLNSQGAVGIKDK EVTNYDIDRVIDSAQAVSIPSDQRVLHVLPQEFVIDGQEVSLDPLGMSGVRLEAKVHL VTCSNSAIKNIEKCIKNCGLGVDGFVLEQLASSHSILSDDEKDLGVCLVDIGGGTTDI AIFNSGSIVFTGVIPIAGDQVTSDIAQALRTPTPQAEEIKQKHGCAVTEFTKDDETVE VLGVGGRPPRELSRSSLADIIQPRYSELFDLIKAEITRNGFEDKISAGIVFTGGTSKM EGVVELAESIFQTSVRLGIPSKFKGMETILQNPIYSTSIGLIEHGNKQINNEMLAEQN LNLFSKLLRIVKSEY" gene 158661..159137 /locus_tag="NT01SARS_0176" CDS 158661..159137 /locus_tag="NT01SARS_0176" /note="identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S6" /protein_id="EJP71700.1" /translation="MNKYEAVIILNPNLSTKVDSFLKEFTSLLSDNSFNIIKTEDVGR RQLAYSINNHNKGHYLLFNIEGDPSKLIDIENKIKYNESIIRHLFVSVKEHDGDESYL FAESKSKKKDTDEDSDDQTSQTEEQVVIENTDNDSVEGNEVEDNAEKEQEEEVKDE" gene 159130..159324 /gene="rpsR" /locus_tag="NT01SARS_0177" CDS 159130..159324 /gene="rpsR" /locus_tag="NT01SARS_0177" /note="identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165" /codon_start=1 /transl_table=11 /product="ribosomal protein S18" /protein_id="EJP71701.1" /translation="MSKYDLPKKFDYKDVNTLKQFITETGKIIPARVTGVSASNQRKL TKNIKIARFLALIPYTDMHK" gene 159327..159773 /gene="rplI" /locus_tag="NT01SARS_0178" CDS 159327..159773 /gene="rplI" /locus_tag="NT01SARS_0178" /note="identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158" /codon_start=1 /transl_table=11 /product="ribosomal protein L9" /protein_id="EJP71702.1" /translation="MKIILLDKIQRLGEIGDIVEVNSGYARNFLIPQKKAAFASKSNI AEVEARKEELAAMSEDVLTKAQARAESINGAECEILVPVTEEGALYGSVGTREISEAF TNINISIDKSEVQLPDGPIKETGDHNIVISVHPEVSVEVLVKVSPE" gene 159812..161182 /gene="dnaB" /locus_tag="NT01SARS_0179" CDS 159812..161182 /gene="dnaB" /locus_tag="NT01SARS_0179" /EC_number="3.6.1.-" /note="identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665" /codon_start=1 /transl_table=11 /product="replicative DNA helicase" /protein_id="EJP71703.1" /translation="MSDININQNEQAREAERAVLGGLMLETQRFDTVIQVIKENDFDG KDHQIIFQSMSELIEENKPLDPLTVSEKLDNKNSLNKVGGKEYLIELATSTPSAANLE AYAEIIRQRSITRKLMKANSDISELISNPQGQDGVSLLDKAESMIFALNDETNKNDSS LQSMKELIPSTMDRLHELSNKSGGLIGSSTGFKDLDTKLQGVQKGDLIVVAGRPSMGK TSFAMNIAENVLLDDDSAGAVLIFSLEMPGESLTTRMLSGMCKLDQQNVRSGMLKDDE LRILLQQSEKLKNLPLWIDDSSILSPMELRAKARRLARTEENGLSLIVVDYLQLMQLP LSTENRVNQISEISRSLKSLAKELNVPVIALSQLNRAVEQRPNKRPIMADLRDSGAIE QDADVILFIYRDEVYNEDSEQGNKAEIIIGKQRNGPIGTVNLTFLKEYTRFENFSSDS FYESFE" gene 161179..162237 /gene="alr" /locus_tag="NT01SARS_0180" CDS 161179..162237 /gene="alr" /locus_tag="NT01SARS_0180" /EC_number="5.1.1.1" /note="identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492" /codon_start=1 /transl_table=11 /product="alanine racemase" /protein_id="EJP71704.1" /translation="MTTLNSELLIDSKILRENISYIKSKLENQTNFMSVIKSDAYGHN LELIIKDIDDISDGYGVVRIEEAIKIRKLSDKKILLMQGVYTDADYQLARENNLDIVV HNNDQFSLITKHNNFNNLWLKVNTGMNRLGLEIDEFENIYENFLKNINFTLMTHLSSS NDKKSKHNAKQFRLFEELVSKLHSNVSLSIANTGCIMNFPDKCFDWVRCGIGIYGGYL DDENLKTAMTLRSPIVNIRKIKAGEGVGYDARAVSKKEMKIASVYLGYADGLPVTIKD GTKVLINDELANVFGKVSMDLTTIDVTNLDCKVGDWCEFFSPRLSISNIAKSNDLISY FLMTSVKSRVKKIYKNIK" gene 162276..163901 /gene="pyrG" /locus_tag="NT01SARS_0181" CDS 162276..163901 /gene="pyrG" /locus_tag="NT01SARS_0181" /EC_number="6.3.4.2" /note="identified by match to protein family HMM PF00117; match to protein family HMM PF06418; match to protein family HMM TIGR00337" /codon_start=1 /transl_table=11 /product="CTP synthase" /protein_id="EJP71705.1" /translation="MANTKYIFITGGVVSSLGKGIAAASIGALLESRGLSVSLIKVDP YINVDPGTMSPFQHGEVFVTEDGTETDLDLGHYERFVRFKASKKNNFTAGKVYETVIR NERKGNYLGGTVQVIPHITNEIKKRIKKGGQNKDIAIVEVGGTVGDIESQPFVEALRQ MALELPNSSWAFVHLTLVPFINASGELKTKPTQHSVKELRSLGISPDVLVCRSEQELP KDEKNKIALFCSVPAKSVISMHDVDTVYSIPILLNKQKVDDTILKKLNLKIKKPNLND WKRVVKAKLLPEKEVNVSFVGKYTELKDSYKSINEALEHAGIQNKAKVNINFVEAEQI TSQNVRKVLKKSDAILVPGGFGERGIEGMILACKYARENNVPYLGICLGMQIAIIEYA RNVLKLKSANSTEFDSSTKFPVIGLITEWSDISGKKEKRTKNSDLGGTMRLGGQVCKL KKKSNSYKMYKKSEIIERHRHRYEVNPNYKDKMIEQGLDVVGTSIDGKLVEMIELPSH KWFLACQFHPEFTSNPRDGHPIFNSYIKSTITK" gene 163907..164737 /gene="kdsA" /locus_tag="NT01SARS_0182" CDS 163907..164737 /gene="kdsA" /locus_tag="NT01SARS_0182" /EC_number="2.5.1.55" /note="identified by match to protein family HMM PF00793; match to protein family HMM TIGR01362" /codon_start=1 /transl_table=11 /product="3-deoxy-8-phosphooctulonate synthase" /protein_id="EJP71706.1" /translation="MKLRNFEIGNNKPLTLMGGMNVLESRDLAMQVAEDFKKVTDKLN INYIFKASFDKANRSSITSYRGPGLEEGLNILKEVSDEFDVPVITDIHEPDQAEPVSE ICEVIQIPAFLARQTDLVNAAANTKSIIQFKKPQFLSAPEMKNVVEKCAAAGNSNILL CERGNSYGYNNLVVDTLNFQILKKLMTPVIFDVTHSLQLPGGLGGSTDGRREYVLSLA KAGISQSIAGLFLEAHPNPDEAKCDGPCALPLSMLEEFLTQIKELDDFIKQQENLDIS " gene 164739..166013 /gene="eno" /locus_tag="NT01SARS_0183" CDS 164739..166013 /gene="eno" /locus_tag="NT01SARS_0183" /EC_number="4.2.1.11" /note="identified by match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060" /codon_start=1 /transl_table=11 /product="phosphopyruvate hydratase" /protein_id="EJP71707.1" /translation="MSKIVQVKAIQIFDSRGTPTISCKVILDNGMEGIAMVPSGASTG SKEALELRDSEIKYHGKGVLNAVDNINNILGPLIVGNDPIQQEKIDQSLIDRDGTNDK SQLGANSILAISIAVSRVAASLKGISLHEHFSDLYKDMTGEKPQQSLPMPMLNILNGG EHADNNIDIQEFMIIPSGAESFTQAMQWSSEVYINLKEILHSMKLSTSVGDEGGFAPN LNSNEDAIKLIEESIIKSDLKPGIDINIALDCAASEFFKNGKYILSGEGKELSSDEFS DYLKNLISKYPITSIEDGMDENDIDGWKLLTKKIGNKCQLVGDDLFVTNKEILSKGIK EEIANAILIKFNQVGSLTETIRAIECATSAAYKSIISHRSGETEDTTIADLAVGLGVG QIKTGAPCRSDRVSKYNRLLWIEEENNKILLK" gene 166115..166318 /locus_tag="NT01SARS_0184" CDS 166115..166318 /locus_tag="NT01SARS_0184" /codon_start=1 /transl_table=11 /product="septum formation initiator family protein" /protein_id="EJP71708.1" /translation="MKIENDLQKNINQELIKSNEILEFEIKNAKDSSDHVENFARENL NLTYPDEEFIIFDDNDEKLDERR" gene 166305..167450 /locus_tag="NT01SARS_0185" CDS 166305..167450 /locus_tag="NT01SARS_0185" /note="identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151" /codon_start=1 /transl_table=11 /product="bifunctional enzyme IspD/ispF" /protein_id="EJP71709.1" /translation="MKEDSIVAIIPAAGIGSRFDGDVPKQYFNVNGSSIIESAVLPFL NSIYVSKIIIPIAKNDKYINAQNFFNHEKISFAEGGKDRHDSVLNALEVIDESYEYVI THDAARPNISEKDIEDLYEVIIENGSSCVYFYSPVYDSIKQLSNNDKTLDKNDFLLVQ TPQISKLVDLKNSIKYCLKEGLHIPDESFAIEHCGFSSSKILGRRSNIKVTEKHDIDY LNKFLTRGGIGFDLHKYKQGKGITLGGVKIECDFEIVAHSDGDVLLHSIADSILGAAG LGDIGEHFPDTDIKNKGLDSKKIINFCLETIKNKNLEIYNIDNTIICEIPKITPHRKA ILNSLSNILKIDSEKIGLKATTSEQIGIIGKNKAIAVQSFVNLRKRV" gene 167447..168196 /gene="surE" /locus_tag="NT01SARS_0186" CDS 167447..168196 /gene="surE" /locus_tag="NT01SARS_0186" /EC_number="3.1.3.5" /EC_number="3.1.3.6" /note="identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087" /codon_start=1 /transl_table=11 /product="5'/3'-nucleotidase SurE" /protein_id="EJP71710.1" /translation="MKILLTNDDGYEAENIKNLYEKLSQDHEVWIIAPKDNCSGMSAA ISYLKEIPVDKISDRVYAVDGTPADCSYLGLLSIVDFEFDIVISGINHGANIGNDVLY SGTVGAAVGGRNLKYPPIAISVASYDAKDIDFISLKSIEIIERIIQKSDVYKGKVINI NFPDINSDEFKGVKATVISKRDVPPKPILISEDGDNQSIYRYNYSGEPLEEDFLTDAI AVKEGYVSVSVLDYSLNSKIFIDQLNRILNE" gene 168189..168869 /gene="pcm" /locus_tag="NT01SARS_0187" CDS 168189..168869 /gene="pcm" /locus_tag="NT01SARS_0187" /EC_number="2.1.1.77" /note="identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080" /codon_start=1 /transl_table=11 /product="protein-L-isoaspartate O-methyltransferase" /protein_id="EJP71711.1" /translation="MNSSGFALRRVREEMIEKLLELGIKDFRVLDAISQVPRHIFVDE ALRSRAYENRSLTIGYQQTISQPYIVARMTELLISHTKSRGKVLDKVLELGSGCGYQS AVLSYFCEKVDAIERIKPLVQKARDNLAELKIHNVQFKYGDGYIDYDKSVKYDGILCA AAPRSYPEDLISVLKNNAKLVLPVGGNSQKLNVITKKHDDNFDEDIYEDVSFVPMLPG KSEDGNDI" gene 168866..169558 /locus_tag="NT01SARS_0189" CDS 168866..169558 /locus_tag="NT01SARS_0189" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71712.1" /translation="MKEKLRFFTAGIFIGVSELLPGISGATVALMFGVYEKILNFLSK FKDLNLMIPLFVGMLFSVFVFSSTINFLYENHTNAFNLFIGILMIGYGLLLLVNTYLE EQTNKGIIFYTVLALSFLIGYYLSSFELIEYTEPNQVLLIIYGLIACSFLLFPGISGS AFLLSVGIYPLIIGSIANFNLNILFPFAMGMLIALVVMPRLINMVYEKFGRVILVFFG GLIFVAGINSFL" gene complement(169553..169870) /gene="fdxA" /locus_tag="NT01SARS_0188" CDS complement(169553..169870) /gene="fdxA" /locus_tag="NT01SARS_0188" /note="identified by match to protein family HMM PF00037" /codon_start=1 /transl_table=11 /product="ferredoxin-1" /protein_id="EJP71713.1" /translation="MTYVVTESCIKCKYTDCVEVCPVDCFYEGPEFLVIHPDECIDCG LCEPECPIEAIYADDELPSDQIEFIEINLKLSEVYENITEAKEPLPEAEKYKNIKNKK EFL" gene 169989..170996 /gene="recA" /locus_tag="NT01SARS_0190" CDS 169989..170996 /gene="recA" /locus_tag="NT01SARS_0190" /note="identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012" /codon_start=1 /transl_table=11 /product="RecA protein" /protein_id="EJP71714.1" /translation="MPKSKDTTSKTLKDTIADIDNHFGKGTVMRMGDRENLDIPSIST GSLGLDIALGIGGIPKGRVTEIYGPESSGKTTLTLQIIAQCQKEGGTCAFIDAEHALD PQYAEKLGVNVDELLLSQPDTGEQALEVADMLVKSKSVDLVIIDSVAALVPRAEIEGE MGDHHVGLQARLMSQALRKITGNIQRSGATVVFINQIRMKIGVMFGSPETTTGGNALK FYSSVRLDIRRIGSVKEGDEVTGNETRVKVVKNKVSPPFKQAEFQIMYGLGINQEGEI LDFGNKLGLVEKSGAFYKLDGESIGQGKSKASQFLKENAKVKNKLVKEIRSSYITSKS K" gene 171046..172227 /locus_tag="NT01SARS_0191" CDS 171046..172227 /locus_tag="NT01SARS_0191" /note="identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930" /codon_start=1 /transl_table=11 /product="3-oxoadipyl-CoA thiolase" /protein_id="EJP71715.1" /translation="MAEKAYIVEAVRTAGGKRDGKLSLWHPADLGAKVLDELVTRLDM DPALVDDVIFGCVDQVGAQSGNIARNAVLSSSFPESVPGTSVDRQCGSSQQAIHFAIQ AVMSGTQDIVVGGGVEVMSMVPIGAAVTDGYNAGHGLPFDSDGMKERYPGVFFSQFTG AELVAEKWNLSREDLDEFALESHQKAANATESKYFDREILPVEGKNAEGINELVLADE GIRFDASLDKLAGLKPVTDGGVITAGNASQITDGAAAVMICNDAGLKKIQSNPRAEIV SISVVGDDPVFMLTGPIPASKKALEAAGLSIDDMDLYEVNEAFAPVPLAWAHDLEADK SKLNVNGGAMALGHPLGATGAKLMTTMLHELERRNGNYALQAICEGGGTANATIIKRL S" gene complement(172231..173511) /gene="proS" /locus_tag="NT01SARS_0192" CDS complement(172231..173511) /gene="proS" /locus_tag="NT01SARS_0192" /EC_number="6.1.1.15" /note="identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00409" /codon_start=1 /transl_table=11 /product="proline--tRNA ligase" /protein_id="EJP71716.1" /translation="MLFSKLLIPTLKEAPQEAEIVSHKLMLRAGMIRKVASGIYTWLP LGLKVLKKIENIVREEMDASGAQEVFMPMVQPRELWEETNRWEKMGPELLRIKDRHDR DFCLGPTHEEVITDIIRDNVKSYKELPLNIYQIQTKFRDEVRPRYGIMRGREFLMKDS YSFNNDEESLQETYLLMRETYKKILERIGLDYKISAADSGAIGGDSSEEFHVLAENGE DTIAVSDASEFAINTELLLKDGEDIKSLEGKPSPDGKGIIQIKKGIEVGHIFKLGKLY AESMKANVLNSDGKAQVLCMGCYGIGVSRLVAASIEQNYDEKGIVWPHSIAPFDINII SIGHDKNKDIEKASMKLYKDLTKMNYSVLLDDRKDGYGKKIKDSELIGIPLNIIVGNK YLENEEVELLARNGESSINPVSDLKTILDFFKTK" gene 173543..173833 /locus_tag="NT01SARS_0193" CDS 173543..173833 /locus_tag="NT01SARS_0193" /note="identified by match to protein family HMM PF09723; match to protein family HMM TIGR02605" /codon_start=1 /transl_table=11 /product="FmdB family regulatory protein" /protein_id="EJP71717.1" /translation="MPIYDYKCSNCEHQIEVIQKISDDPKTTCPKCNKESLSKLISAP SFRLKGSGWYETDFKTGKKKNISSNESSKSDKSIESSKSDSKKAAKQDKIKE" gene 173846..175612 /gene="aspS" /locus_tag="NT01SARS_0194" CDS 173846..175612 /gene="aspS" /locus_tag="NT01SARS_0194" /EC_number="6.1.1.12" /note="identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459" /codon_start=1 /transl_table=11 /product="aspartate--tRNA ligase" /protein_id="EJP71718.1" /translation="MKSHYCGEITSKNLKEDVTICGWIHRRRDHGGVIFLDVRDIKGI CQAVVNPDQKDSFKLAESIRNEFVVQITGKVRKRLEGTINKTMHTGEIEIEVNIINIL SKANTPVFPIDEYQEVNEDVRLKNRVLDLRRPEMNERIITRSKITSLIRNFLDDNDFN EIETPILTKATPEGARDYILPSRVQPGSFYALPQSPQLFKQLLMIGGLNKYYQIARCF RDEDLRADRQPEFTQIDIEASFLDEEEIMKVSEEMIKKVINKFCGDKLSKFAVLDWQD AMDRYGCDKPDLRIPLELIEISDLVKDEEFKVFSDPAKKKNSRVVALKVPKGNSMSRG QIDEYTKFVSKLGAKGLAYIKVNDVNDIENGIQSPILKFLNVETVTKILKKLDIQTDD LIFFGAGSESIVNLSMSSLIKKLGEDLSLYTEKWAPCWIINFPMFETNSDGDLTPLHH PFTLPKCSSKEIKNDPENATAYAYDVVLNGYEIGGGSLRIYDKSMQETIFEILKISKE EADKKFGFLLKALSSGCPPHGGIAFGLDRIVMLVTNTNNIRDVIAFPKTQSAACLLTD APSTVEKAQLDELKIESTHKED" gene 175616..176353 /locus_tag="NT01SARS_0195" CDS 175616..176353 /locus_tag="NT01SARS_0195" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71719.1" /translation="MAGHSKWANIKHRKARQDASRGKIWTKVIREITVAAKDGPDPAD NPRLRLALEKANSANMPKDTIKRAIEKGSGTGETGVLEEITFEGYGPGGVAILVETMT DNRNRTVSDVRHAFSKYGGNLGTDGSVSYLFKKLGIVQVDKNFTEEELMEIVIDIGAD DLSEEGDFFEIITDSNSFNDVVDAIKEKKIKYSNAELTLRAETLVKLDNEMSEKVLNI MEFMDDLDDVQEVHTNAEFPDDFEVKN" gene 176355..176780 /locus_tag="NT01SARS_0196" CDS 176355..176780 /locus_tag="NT01SARS_0196" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71720.1" /translation="MSINSRNKGAAFERQIAKALIEDLNLKNPVKRILEQTRTKELPD LMLGTWCIECKAYGTGAEPRPDWWDQVLTSSNQHNLKPALVYKFNNRPIKVRILASSL NKDIKNDLVTVDLLWPDFIQIILELFQEDIELHEQTYQV" gene 176758..177168 /locus_tag="NT01SARS_0197" CDS 176758..177168 /locus_tag="NT01SARS_0197" /note="identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051" /codon_start=1 /transl_table=11 /product="thioesterase" /protein_id="EJP71721.1" /translation="MSKLIKCKSLNFKIYVEDTDFQGVVYHANYIKFFERARSEFLSD NKISQSELKKNDQAFVIKSVNIKYIAAAELGDNIYVESEVEKKSNARMIFNQKVINCD NEKEYAIGVVEVCFINLVTKKPQKFPDDLLLIFD" gene 177177..177842 /gene="tolQ" /locus_tag="NT01SARS_0198" CDS 177177..177842 /gene="tolQ" /locus_tag="NT01SARS_0198" /note="identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796" /codon_start=1 /transl_table=11 /product="protein TolQ" /protein_id="EJP71722.1" /translation="MEEISVLNLFLDAGLVVKLVMIILFVASILSWIVIVERYKFLKN IKSQNDVFLKKFWSGSDLDELFNEIRSSKSFGAINLFKNSYDEFINLTTKEDLTELDL ESINRSMRVSIASDDEEMSKHLSFLANVGSVSPYIGLLGTVWGIMTSFQGLSDATQAT INAVAPGISEALVATGMGLFAAIPAVVAFNKFTSESESISQNTLIFAEELASIFYKKS IKK" gene 177839..178261 /locus_tag="NT01SARS_0199" CDS 177839..178261 /locus_tag="NT01SARS_0199" /note="identified by match to protein family HMM PF02472" /codon_start=1 /transl_table=11 /product="biopolymer transport protein ExbD" /protein_id="EJP71723.1" /translation="MIYRLAKKKNLKAEINVVPYIDVMLVLLIIFMILSPLLIQGIEV NLPKTDTTKMSVQSEPLVVSINSNGEYFINIGDESLPINLEELKRKSKVIFDANPEIE VVFQSDKDASFDYVAKAMASVQSVGISKIGIVTTGYAD" gene 178251..178874 /locus_tag="NT01SARS_0200" CDS 178251..178874 /locus_tag="NT01SARS_0200" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71724.1" /translation="MQTSLKYLEASFISFLIHAAFILYLLGFFYFENSKRSVISKPIN VNLIFESPNIESNIKKSNVNKIVESPVESLNDNLEIKKNTISFDELVVSSDIQNLINE DNTILEQSDQNKIDLFSSMIISNIQSAWRKPINIQDNLVCEMLLTVNKNGRIIKTNLI KSSGNIRFDNSALKAVERVETFIFFGDIPQSLYQTNFRTIQIRFNPA" gene 178871..180115 /gene="tolB" /locus_tag="NT01SARS_0201" CDS 178871..180115 /gene="tolB" /locus_tag="NT01SARS_0201" /note="identified by match to protein family HMM PF04052; match to protein family HMM PF07676; match to protein family HMM TIGR02800" /codon_start=1 /transl_table=11 /product="Tol-Pal system beta propeller repeat protein TolB" /protein_id="EJP71725.1" /translation="MRKLFLIFLFFNQLYAELILEITQGTDDPYRVAILPFSGDTEMS EELESIIKNNLNRSGEFETFGEEELLSSPSSEEEIVFNDFKILNIDYLVMGSIAGGDV IYNVFDISKSSKIRTSTVFGIPNKNRQLAHYISDGIYEEITGLKGISSTRILYVTENE KFNLVVADADGKNEQILLESNEPIISPVWSPDSKRVAYVSFETGMAKVFIQNIGTGER EVVIENSSQISSPAWSPDGKFLSLTLYQDGNAEIYILNLRNKNLTRLTNHYSIDTESS WSPRGSKIMFTSGRSGSPQLYEIDLRRFNSKPKRITFEGNYNAKGSYMPDNQGIVFVH RSESEFKIAMKYFDENFIRPLTVSQMDESPSISPNGNVIVYAIKDGNKGLLAGVTLSG AKFKLPASNGAVREPAWSGYLR" gene 180131..180619 /locus_tag="NT01SARS_0202" CDS 180131..180619 /locus_tag="NT01SARS_0202" /note="identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802" /codon_start=1 /transl_table=11 /product="peptidoglycan-associated lipoprotein" /protein_id="EJP71726.1" /translation="MRFLRSNFSFLVAILFLASCSSMNVTEETVNANNVKTVKASQMM DENITYDSQAVFANATIYFDFDKTNLTSKSLQTLKSVAEALNENSQLRVTLAGHADER GTREYNLALGQRRAEAVSQYLILNGVSKNRLVVKSFGEEKPIAFGQDEESYSKNRRVE IN" gene 180644..181291 /locus_tag="NT01SARS_0203" CDS 180644..181291 /locus_tag="NT01SARS_0203" /codon_start=1 /transl_table=11 /product="tetratricopeptide repeat protein" /protein_id="EJP71727.1" /translation="MLYKVTLFLLIFSSIASKAEDNQDLKNDILFLKIQELEAEIAEL RNKVESQNFLIEKLISESLGNSESDSDDNIENLALNADIRFKGIEDPKSKDQVYNVAI EALEIQDFEKAFNLFSYFVDSFDDNEKTPLAYFWLGEISLIKNNLEESENYFMELIIT YPDHYRIPLAHKKIGDLYLKNNDTNAAKDKYNFVVREYPNNTASSLALQLLKNME" gene 181318..181395 /locus_tag="NT01SARS_0204" tRNA 181318..181395 /locus_tag="NT01SARS_0204" /product="tRNA-Lys" gene 181418..182680 /locus_tag="NT01SARS_0206" CDS 181418..182680 /locus_tag="NT01SARS_0206" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71728.1" /translation="MFFSSARDSINEIKESFSKESLLGSFLFFLVLSSWYVLRPVRNE MAVANVDDLPYLLAAGAVAMLLINPIYSWVVSKTNLRKIVIYCYSFLIVNLLIFLSTW KFLGIGDSVWVGRIFYVWCNVYSFFVVSIFWVVIINIFRNSKTRSFYGVIMAGGSLGA IFGSEISKRFSNSFDEYGLEFFTLSAAILLFFAMLLAMNITRSKMNEKILDKNSVGGG SLDSIKNSIQSEEIRNIAAYVWMWTCLMTIQWITAINIIEEWSSDSQQRISFFATIEQ IVSPLTLLIQLFLTNIIIRKVGIKNIMILYGFLFLIAYLLYGFFPSIVAVAIVTVFLR VFEYGFNKPTREIIYSTLKQNDRYKSSVLIDTFVSRFGDLTGSALIKLAGFTTITFNS LPLMALPIAGYLSFLGMRISKENKIRDL" gene complement(182667..184100) /locus_tag="NT01SARS_0205" CDS complement(182667..184100) /locus_tag="NT01SARS_0205" /note="identified by match to protein family HMM PF01435; match to protein family HMM PF07719" /codon_start=1 /transl_table=11 /product="peptidase M48, Ste24p" /protein_id="EJP71729.1" /translation="MNSKFLNFYIFLSVFLSSAYSYAQELDLPELGDRVSGAVSVSQE RAIGQQFLKQVYSQAPLISDPLLFDYTEHLIYRLSEYSQVANRSFNILLIDDSSLNAF AAPGGIIGVNGGLFLHADNEGQFSSVLAHELAHLSQRHFARNVLKSKDSNLSSALVMV SSIAIALISNNPNAIAVGPAIMQQQNLRYSRLFEKEADRVGFINLVNAGYNPNSMGEM FENMNDLRRLSGDLPPEFLLTHPLSSSRISDAFNAAENISEEGTKQDSLEFSLMKARL EIYYENIPANALRLFESKYAENPSDANLYGLALAYKKNNNFNEGLASLDKLLEKYPKN LVLNTTKVEFLSYFNKFNDALDLANKFLEISPKNYPLSISKSQILLNMGQYFESEEII RDQLLRKNDSPELWFMLSETQKTSQNIVGYHQSRAEYFLLLGQDEKALNQLEFALQLT QNNFQVSDRIMTKIIEIKKSLQNSRGL" gene 184193..185254 /locus_tag="NT01SARS_0207" CDS 184193..185254 /locus_tag="NT01SARS_0207" /note="identified by match to protein family HMM PF01594" /codon_start=1 /transl_table=11 /product="putative permease PerM" /protein_id="EJP71730.1" /translation="MFEHINNVFKKIFNNEETIIFSLIIVLSLVVLNFFAAVLTPFII SIVVAYLLVGLQKKIETYNISESIALMLSFSIFIIFGAAMFIWLIPLIYVQLQSFVLD LPRLFNEFLNFVSNMPTAFPELVTSDQISVFFQAVSSELSSITQNIVKSSISGIQSTI TVLLYVILFPILVFFFLFDRKNIIEGITNIIPGKREMFSNVWKEMDVQLSNYVRGKVL EILIVGFAAAILFSFFGLKYTALLSVLVGLSVLIPYVGAFTVTIPIIIIGLLQFGLGS QFYLLVGLYLLLQFLDGNLLVPIIFSEAVKLHPIIIILAVFIFGSMFGFWGVFFSIPL ATFIKAVWNSWPGSSLNET" gene 185244..186209 /locus_tag="NT01SARS_0209" CDS 185244..186209 /locus_tag="NT01SARS_0209" /note="identified by match to protein family HMM PF01112" /codon_start=1 /transl_table=11 /product="isoaspartyl peptidase" /protein_id="EJP71731.1" /translation="MKHKVLVLCFLLSQVSFLMSSENYGIAVHGGAGVMKNLSENQKQ KIEEQIIKTLTEAFKIIEQGGTSMDAVEFAVSEFEDSPLFNAGRGSVYNSEEVQEMDA SIMSGQNRSAGAVASVRTIKNPIKVARKVADLTEHVMLIGEGAEKFAEQIGEEIVSKD YFYSEKNLKRLRKAKNKSTNLNLIQDKIGTVGAVAIDKYGNIAAATSTGGMTNKMPGR VGDSPIIGSGTWAQNNVCGVSSTGHGEFFIKYQVAKEVCTRIEYLNKSIVEASQEIID ELEQIEAYGGIIAIDYDANIAMPFNTDGMIRGGITNKRKIFVEIY" gene complement(186206..186670) /locus_tag="NT01SARS_0208" CDS complement(186206..186670) /locus_tag="NT01SARS_0208" /note="identified by match to protein family HMM PF00578; match to protein family HMM PF08534" /codon_start=1 /transl_table=11 /product="putative peroxiredoxin bcp" /protein_id="EJP71732.1" /translation="MSNLEGKKCPAFQGECTNNKTFSNKDFSNKNLVIYFYPKDSTPG CTTEGQDFRDNYKEFKKYDTEILGVSRDSVKSHENFKSKQSFPFELLSDPDEKMCNAF DVMKMKSMYGKQYLGVDRSTFLIDKAGKVKREWRSVKVKGHVDEVLNEVKNL" gene 186685..187626 /gene="dapA" /locus_tag="NT01SARS_0210" CDS 186685..187626 /gene="dapA" /locus_tag="NT01SARS_0210" /EC_number="4.2.1.52" /note="identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="EJP71733.1" /translation="MTVIFIIVYSLILLNYKTMQELNGSFVALVSPMKSNGDIDHSAL KKLIDWHIEEGTDGIVSVGTTGESATVNFNEHIELIKYTVDYVNNRVPVIAGTGANST SEALDLTIESEKNGADYALLVTPYYNKPTQAGLIKHYTKIADSCNIPQILYNVPSRTS CDLLPETVKHLSNHKNIVGIKEAVNDKQRINDLINISKDNDNFKILSGDDPTFCEFLQ LGGDGVISVAANVIPNDISKICKAVRNNNNEEATEINKKYFNLYELLFIESNPIPVKW MLYKMGLIDNILRLPLIELDTKYHEIISAEMIKLQLI" gene 187623..188609 /locus_tag="NT01SARS_0211" CDS 187623..188609 /locus_tag="NT01SARS_0211" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="EJP71734.1" /translation="MIKYFLILVTMILISSCSLFGGSEGYFPDKKYDFLDEEIEEDIS LPGSLSNPDTENHYPVSDLEIIDDQLEVPKPRQIFASSGNSSVQLRRLGELMWIYIET LPSTSWPISKNYWDTSIYEVTKADPNTGEIDIDYDQNTKLQMRVEHGIKEASTEIFLY QINKSDGTIISNPDFLQNQMSQIVEYFAESISNFSGTSLAAQNLNEMKKANIFTEDGK TVIALDLNFDRAWSSVSKALVDANIVTNDRDRTNGIFFVSYAQEEEGGFFGLFGRRNE QVNPEEIVIGEESDFEIIITEENDKTFVRAVSKDGNIEESEQLLSKINESLS" gene 188609..189325 /gene="purC" /locus_tag="NT01SARS_0212" CDS 188609..189325 /gene="purC" /locus_tag="NT01SARS_0212" /EC_number="6.3.2.6" /note="identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazolesuccinocarboxamide synthase" /protein_id="EJP71735.1" /translation="MNKIQEITKGKAKSMFTTENDDHLIMHFSDDTSAFDGKKKEALL GKGAVNNQFNAFIMDHLKENGVDTHLIEMIDNTDSLVYKLEMFPIECVIRNRASGSIC KRLGTEDGLVFESPLFEFFLKDDDLGDPLINDEHIISFGWANLSQIEEMKKQTYKVNE ILSKLFLDSGLILVDFKVEFGVYKDKILLADEFTPDGCRLWDSKTMKKMDKDRFRQGL GDVVESYHQVADRLGMNIET" gene 189356..189790 /locus_tag="NT01SARS_0213" CDS 189356..189790 /locus_tag="NT01SARS_0213" /note="identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738" /codon_start=1 /transl_table=11 /product="HTH-type transcriptional regulator IscR" /protein_id="EJP71736.1" /translation="MRLTTKSKYAVSALTELSFLQSSGPVSLSDISNNQNIELNYLEQ IFRKLRIAGIVKSIRGRNGGYLYAKDPANISVKEVMNAVDEVLDATKCNGTSNCHNGK KCSTHDLWHELNNIVEDYLEKITINSLVETYDSPYIKFKEIN" gene 189791..191011 /gene="iscS" /locus_tag="NT01SARS_0214" CDS 189791..191011 /gene="iscS" /locus_tag="NT01SARS_0214" /EC_number="2.8.1.7" /note="identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR02006" /codon_start=1 /transl_table=11 /product="cysteine desulfurase IscS" /protein_id="EJP71737.1" /translation="MSTQSTIYLDYASTTPVDPRVASKMMEFLTPEGEFGNPASRSHR FGWKADEAVEQARSHVANLVNCDPREIVWTSGATEADNLAIKGVARFYKSKGNHIITS KIEHKAVLDPCRQLEREGFEVTYLDPDDGGVISPEAVKSAMKDSTILVSIMHINNELG TLNNLTEIGEIVREKGAFFHVDAAQSTGKTEIDLTKMPVDLMSFSAHKTYGPKGIGAL YVRRKPRVRLEALIHGGGHERGMRSGTLATHQIVGMGEAFRIAKIEMEKDLAKVNAFH KRFLEKVEEIDHIYINGDLNNKVPNILNVSFNFVEGESLIMGLKDIAVSSGSACTSAS LEPSYVLRALGRKDELAHSSIRFSFGRFTSDEDVDNTLKILGNVVHRLRELSPLWEMH LDGIDLDTVEWNTH" gene 191021..191425 /locus_tag="NT01SARS_0215" CDS 191021..191425 /locus_tag="NT01SARS_0215" /note="identified by match to protein family HMM PF01592" /codon_start=1 /transl_table=11 /product="iron sulfur cluster assembly protein 1" /protein_id="EJP71738.1" /translation="MAYSKKVVEKFENTLNNPEAFKVGRFDPKETNVGTGMVGAPACG DVMKLQIKCEPKGNTHIIKDVKFKTYGCGSAIASASELVDMLIGKTLEEAKAIKNVEI VEALELPPIKIHCSVLAEDSIRQAIEDYESKQ" gene 191430..191771 /locus_tag="NT01SARS_0216" CDS 191430..191771 /locus_tag="NT01SARS_0216" /note="identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049" /codon_start=1 /transl_table=11 /product="iron-binding protein IscA" /protein_id="EJP71739.1" /translation="MSTFTPSELNFSDSAINHFSEMISSRGKGVGVKIGVKKAGCSGY EYFFDFVDNDLDDHICFKKKEFNIYVDNISIDFLKGSLVDYVDDGLNKGIKFVNPNAK AVCGCGESFTI" gene 191776..192117 /gene="fdx" /locus_tag="NT01SARS_0217" CDS 191776..192117 /gene="fdx" /locus_tag="NT01SARS_0217" /note="identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007" /codon_start=1 /transl_table=11 /product="ferredoxin, 2Fe-2S type, ISC system" /protein_id="EJP71740.1" /translation="MAKIKIWPHEEICPNGAEIESLPDETICEAALRNNIKIEHACEM SCACTTCHCIIRKGFDSLDEASDMEEDLLDKAWGLEQTSRLSCQTIPPDNEEIEIELP KYNINMVSEDH" gene 192117..192320 /gene="iscX" /locus_tag="NT01SARS_0218" CDS 192117..192320 /gene="iscX" /locus_tag="NT01SARS_0218" /note="identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412" /codon_start=1 /transl_table=11 /product="FeS assembly protein IscX" /protein_id="EJP71741.1" /translation="MQKLDWLDVLDIAIELNELYPEIDPQWISFPDLHKKICDLENFC GDPAKSNEKILEAIQSNWIEEYQ" gene 192360..192785 /locus_tag="NT01SARS_0219" CDS 192360..192785 /locus_tag="NT01SARS_0219" /note="identified by match to protein family HMM PF00334" /codon_start=1 /transl_table=11 /product="nucleoside diphosphate kinase" /protein_id="EJP71742.1" /translation="MAIEKTLSIIKPDAVGKNLIGKIISRFEDNGLCVVAAKLIHLSD DMASGFYAEHEGKPFFDDLKKFMTSGPVFVQVLEGENAVQKNRELMGSTNPQEAESGT IRADFANSIDANAVHGSDSISSAKREIEYFFNTEEILIK" gene 192787..193866 /locus_tag="NT01SARS_0220" CDS 192787..193866 /locus_tag="NT01SARS_0220" /note="identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048" /codon_start=1 /transl_table=11 /product="radical SAM enzyme, Cfr family" /protein_id="EJP71743.1" /translation="MQNKKNLLGYSLESLKDFFTDIGEQSYRAKQVLKWIHQKGVLDF SEMTDLNKDLRNKLNNHAFIKPPQIEEEFISNEGTKKYLLKLDSGSMIEMVIIPEGKR RTLCISSQAGCALACTFCATGAQGFDQNLNSSEIIGQLWLANFNKKNNKLITNVVFMG MGEPLLNFDAVIESAKIMKDQLGYGLSRKRITISTAGIVPNIKKLNNYVDVSLAISLH ASNDVLRDEIVPINKKYPIEKLLNACQDYLGKENKRKHVTIEYILIKNVNDSLEDAKG LVKLLSKLPCKINLIPFNSFNGSNYERPCNKTINDFKSFLINKGFIATLRTTRGDGVD AACGQLVGNLTKSIKGKKLISHKTI" gene 193866..194615 /locus_tag="NT01SARS_0221" CDS 193866..194615 /locus_tag="NT01SARS_0221" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71744.1" /translation="MKGYLKSASSVKTGKKFYESRLAKNYSIDDVAEILYINKDYVRA IESGNFSIFPSKIFAKAYFDKYRKFLGINCQLPDVFDDIESKELKNLKKEVRLPYDWN KKIKKFSAIIASLFLLALLFYFIPNSVSISEQDTTIQEINPERLKPLEESVFNNNIIQ NNSFKKDNENEIFLSFTSSSWIEIYVNNELIEAQQFKAGDTYSRKVQIPFKIVVGNAD SLKGTYNGEMIDFSTDNDSLYGVKTVLFDDE" gene 194605..195711 /gene="ispG" /locus_tag="NT01SARS_0222" CDS 194605..195711 /gene="ispG" /locus_tag="NT01SARS_0222" /note="identified by match to protein family HMM PF04551; match to protein family HMM TIGR00612" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" /protein_id="EJP71745.1" /translation="MMNNWIKRKKTKTIMVGSVPVGGDNPISIQSMTNTDTCDVVSTV KQIKDLELAGADIVRVSVPGYEEAKAFKEIKKAVNVPLVADIHFDYKIALEVADTADC LRINPGNIGKEDRVKEVINAATDNNVPIRVGVNAGSLEKDLQKKYGEPNADALVESAL RHVEILDRFNFENYKMSLKASNIEMTVDAYRKVSDLIKQPLHLGITEAGSFRAGTVKS SIGVGMLLSEGIGDTIRISLASDPVDEIKVGWDILKSLNIRSRGVKIIACPSCSRQNF NVIKVVNELEQRLEDISEDIEVAIIGCYVNGPGESKAANIGLTGASPKNLLYVDGAPN KKISNDNLVNELEDQVRKKVAQSKTDSEKIILRS" gene 195713..196978 /gene="hisS" /locus_tag="NT01SARS_0223" CDS 195713..196978 /gene="hisS" /locus_tag="NT01SARS_0223" /EC_number="6.1.1.21" /note="identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442" /codon_start=1 /transl_table=11 /product="histidine--tRNA ligase" /protein_id="EJP71746.1" /translation="MDKINSLTGMPDLIGQKSNESNSSNKIFETEIALIKIFESYSLN EIRTPALENESLFNRSVGDSSDIVNKELYTFLDKNKKKISLRPEGTAGVARSIIEKKL DNETHRFWYLGPMWRYERPQKGRYRQFYQAGIELLGYSEGLAELEMISMILSINDALG IKNSKIKINHLGNKDAKDQFCEALKNYLEPFSSKLEKLDLDRLNKNPLRVLDSKSEQT KDILKDAPKMNEFVSKESLDLLNLIKNSFSEHNIEIDYSLVRGLDYYTGFIFEAISDD LGAQDSYLGGGRYDNLFSDLGGKKLPAIGMAIGIERLAEISNYSVENKTLISFIVLSD KIEQNAYKIAHEFRYLNNNIIIEVQLSDGSLKSKLRKANKDKADFAIIIGDEELKNKT LVLKPLKENDSDQKILSIEDAKKFISSLN" gene 196990..197643 /locus_tag="NT01SARS_0224" CDS 196990..197643 /locus_tag="NT01SARS_0224" /codon_start=1 /transl_table=11 /product="tetratricopeptide repeat protein" /protein_id="EJP71747.1" /translation="MNDIYDNNMRFIPLLKFLDKHKYVLIASVATILLLISFFVVSNQ ISKQKHNEAASIYSKWLIEISKDDPDLIEIDNMLSSFVNDYQDTGYALIALLTKANLD AKNGNLDSALVNFNKIIEFTDGYRGNKVFNKLARVSSARINLSNGQVEEALEKIQGYS STDTNAYIHELTGDILAEQNKSELAIKQYQLASEKYSDQTSKSIISMKIANLDNGNE" gene 197630..198799 /gene="yfgL" /locus_tag="NT01SARS_0225" CDS 197630..198799 /gene="yfgL" /locus_tag="NT01SARS_0225" /note="identified by match to protein family HMM PF01011; match to protein family HMM TIGR03300" /codon_start=1 /transl_table=11 /product="outer membrane assembly lipoprotein YfgL" /protein_id="EJP71748.1" /translation="MEMSKLNKKTFFIILLSSSLVSCSTFDSLRFWQNDDDVDPDEPK ELLSFNEQRNINIEWDISFNGVNDLGSFKPGFSSENLFFADAEGNLISVQSSTGKENW KKQLNFLSSGVASGFGILVVSDIKGNVIALNQNDGSEIWSTNVKGEVLSTAAIDPKTV VVKTGSGELIGLEKTSGETLWSYRSKLPTLTIRGSSSPVIFDNNVFVTFDNGRLGVFD INSGFLLWDGAISYVSGTSELDNLIDADADPVVDGGLVYTTNYQGKLNIFDIAQKRSV WSYDVSSFFSPVVSRGMIIVSESNSNIKSFSAKSLEESWSNEDYLNRELSNPASFKGN LVFGDFEGYLHVIDPLNGKTIGRKKISKKPIKTLFSRSNSLYAIDEAFNLFSVSI" gene 198814..200199 /gene="engA" /locus_tag="NT01SARS_0226" CDS 198814..200199 /gene="engA" /locus_tag="NT01SARS_0226" /note="identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR03594" /codon_start=1 /transl_table=11 /product="ribosome-associated GTPase EngA" /protein_id="EJP71749.1" /translation="MFTSIAIIGRPNVGKSSLFNKLTRSRDAIVSDFPGLTKDRNYGY FESKHKKTLLIDTGGISQSNDGLKGAISQQAWIAVQESSLIILLIDGSEDLSKEDLEI ITNLRKLNKEFITVVNKIDKKTDSSAVQDIHKNGIKEFYEISVEHSINLSKLKSFLES KIPEKNNDISDDKKVAVLGRPNAGKSTFINQLVNEERLIVSEIAGTTIDAISIPFEIN NDKFTLIDTAGIRKGYKYNHKVEYFSFIRALHAVEKSDIVIFLCDANESLVDQDLKIL NIIIDAGKPILFAFNKIDLLSKQDLLNLYQTKKMQSEFMQKIIKVEISAFKRKGFKRV FKETNNIIKKSKESFSTSMLNKLLDKFVKQSAPPSVGGRLLKFKHVHFSGIYPTTLVI NANQDKKIPANYRKYLENSFRKELNLDSIQLKLIFKKSLNPYQDKKNILTGRQEKKRQ RLIKHKSKSKK" gene 200529..200642 /locus_tag="NT01SARS_0227" CDS 200529..200642 /locus_tag="NT01SARS_0227" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71750.1" /translation="MDFLHIGESLNTANNSAIFVIVFWIISSLSILFYIYS" gene 200711..201001 /locus_tag="NT01SARS_0228" CDS 200711..201001 /locus_tag="NT01SARS_0228" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase hydrophobic membrane anchor subunit" /protein_id="EJP71751.1" /translation="MIFILSFEGEIGFFDWTKFFLSFQMRFLTSIVCVFILIHAFIGL WTVGTDYLTKRTLGFLSNPLSAMADLLRKAYLFLFVVLGLMYLTVILYIIWT" gene 201037..202821 /gene="sdhA" /locus_tag="NT01SARS_0229" CDS 201037..202821 /gene="sdhA" /locus_tag="NT01SARS_0229" /note="identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, flavoprotein subunit" /protein_id="EJP71752.1" /translation="MNNIFTDNIKTIEFDSLIVGGGGSGMRASLELAKSGLKTAVVSK VFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGADFIGDQDAIEYLCSEGPKA VFELEHMGLPFSRFENGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQN NVKEGTNFLNEWFAVDLVKNSKDEVTGVIAFSIENGEVAYLKAQATVLATGGAGRIYA STTNALINTGDGLGMALRAGFPAQDMEMWQFHPTGIYGAGSLVTEGCRGEGGYLINKD GERFMERYAPNVKDLAGRDVVARSMVLEILEGRGCGEKNDHIFLKLDHLGADVLNSKL PGICELSRTFAHVDPIYEPIPVVPTCHYMMGGTPTNVNGQAFTRINDEDKLIPGLFSA GEAACVSVHGANRLGGNSLLDLVVFGRATGMHIQNELKSGGGVDSATRSDIKQSLERL NILNESKDGFDPAEVKRELQECMQNYFGVFRRGEFMKKGLDQLNEIREKVDNLHLKDK SDAFNTSRVEAIELQNLFEVAEATAVSAYMRNESRGAHARDDFPERDDENWLCHTIFD PKNKEVSKRDVNFQPSKVEAFPPKVRTY" gene 202821..203561 /locus_tag="NT01SARS_0230" CDS 202821..203561 /locus_tag="NT01SARS_0230" /note="identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase and fumarate reductase iron-sulfur protein" /protein_id="EJP71753.1" /translation="MFGNKLHVSLYRYNPEEDQFPYMKKYTIDKPDRDIMVLDLLHLL KEEDQSISYRRSCREGVCGSDGMNINGKNGLACITPISSVLKKNKIELRPLPGLPVIR DLVVDMTEFYAQYEKIKPFLQNETTAPEQERLQSPEERDKLDGLYECILCACCSTSCP SFWWNPDKFVGPAALLQAYRFLADSRDLKTEERLNDLSDPFSVYRCHGIMNCVNVCPK GLNPNKAIGEIKSMLHKNKKDIIASDRI" gene 203588..206380 /gene="sucA" /locus_tag="NT01SARS_0231" CDS 203588..206380 /gene="sucA" /locus_tag="NT01SARS_0231" /EC_number="1.2.4.2" /note="identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239" /codon_start=1 /transl_table=11 /product="oxoglutarate dehydrogenase (succinyl-transferring), E1 component" /protein_id="EJP71754.1" /translation="MKELWGSSHISAGHAAYLESLYETYITDPNSLSEEWINFFENLP HHATSNGEISHQNIVREFKNVSRKNSVTKSSVDERQGKVIRLIQSYRNRGHQQANLDP LGLMIREKIEDLNIEFHGLSSSDLEEEFYTDTFMPGSEKMKLKEILASLEEIYCGNIG IECNHIMESNERRWFQRKFESKLKEYSFSEEEKLNIYERLNSAEGLAKYLSAKYPGMK RFGIDGAESLVPLIENVIQNFGSMGANQICFGMAHRGRLNLLVNVLGKLPSELFSAFD ENFELEGASTGDVKYHLGFSSNFNTPGGEVHVSLFNNPSHLEIVDPVVIGSVRARQDR LKDKDRSKVVPILLHGDASFSGQGVVMESLQMSQTRGFSVGGTVHIIVNNQIGFTTSN KDDSRSTDYSSDVAKMIQAPIIHVNGDDPEMVINAAKIACKYRNKFKKDIVIDLFCYR RRGHNEADDPSATQPIMYNKISKHPSVLSQYEEKLIHEGLIDKVKAKKIKSDYRKSLE GGKSVAKNLAEKPNDSLWFDWQPYMDVKWWPKVNTKFPKQKFKKLGSEICKIPDSFNL GSQAKKIFSDRLEMTNSKLMTNWGYAEIMAYASLLSEGYPIRITGQDVRRGTFSHRHA CIFDSKTGNGHIPLAKIAAENKTKFDIYDSLLSEEAVLAFEYGYSATWPSGLTIWEAQ FGDFANGAQVVIDQFIVSAQHKWERLSGLVMLLPHGYEGQGPEHSSARIERFLQLCAS ENIQVCVPSTPSQIFHLLRRQAIRKMRTPLVVISPKSLLRNPEAVSSLEDLYNGSFSC VIDDDSDKKKVNKVIMCSGKVFYDLNKKKKENNIKDIALIRIEQLYPFPYDDLEEILT KYENVQEFVWCQEEPLNQGAWFSHRHRIQRVIDRIDTSKEVGLVSRPAAAAPAVGLMK LHLQQQEELVNKALIK" gene 206377..207573 /gene="sucB" /locus_tag="NT01SARS_0232" CDS 206377..207573 /gene="sucB" /locus_tag="NT01SARS_0232" /EC_number="2.3.1.61" /note="identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347" /codon_start=1 /transl_table=11 /product="dihydrolipoyllysine-residue succinyltransferase" /protein_id="EJP71755.1" /translation="MSIEIKSPTFPESVADGTIANWLKKEGESVAQDEVIAEIETDKV VLEVLAQSDGVISKILKSEGETVISSEVIGEYEEGDVPVDEKQEEPQEKDTVKSESIV SPKEEKKKSGPAVKKILAEKNLDPSEVKPSGKGNRLTKADVINHIAAKDNESVVEKVS DHQVGDRPQKRVPMSRLRSTIADRLVSVKQNTAMLTTFNEVDMLPIKELRSKYGAEFE KEHEVKLGFMGFFVIAAVQALKKFPVVNASIDGSDIVYHGFQDIGVAVSTERGLVVPV IKDADTKSLPEIEKSILEYSEKARNGKLSIDEMQGGTFTISNGGVFGSLLSTPILNAP QTAILGMHSIQDRPVAINGEVCVRPMMYLAMSYDHRLLDGREAVTFLVSIKEQLESPE RLLLNL" gene 207588..209006 /gene="lpdA" /locus_tag="NT01SARS_0233" CDS 207588..209006 /gene="lpdA" /locus_tag="NT01SARS_0233" /EC_number="1.8.1.4" /note="identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350" /codon_start=1 /transl_table=11 /product="dihydrolipoyl dehydrogenase" /protein_id="EJP71756.1" /translation="MYDVVVIGSGPAGYVAAIRAAQLGLKTVCIEQSSNDDGKPNFGG TCLNVGCIPSKALLDSSHRFYEANKNLSDHGIDIKDMKLDLSAMMKRKDDIVSKLTGG ISGLFAANKVDSISGSGKVVGSNLVEVTKSDGSTEELEAKNIIIATGSLPIEIPAGKF GDKIVDSTGALAFNKVPKSLGIVGAGIIGLELGSVWSRLGSKVTVIEALDTFLPMTDP DISKETFKEFKKQGLDIKLNSKLVASKELKNTVKVTFNENGTDVEEEFDKLIVAVGRK PNSSNIIDESLNIAIEEGFIKVDEHCQTSVKNIWAIGDVVRGPMLAHKGSEEGIMVAE RIADKHAEVNYDLVPSVIYSHPEIAWVGKNETELKDKKISYKVGKFPFAASGRALAVD QSVGFVKVLSDSKTDTILGVHVFGPAAAEIVQQALISMEFGASAEDIALTMFSHPTVS EAFHEAALAANNQAIHIGNKTR" gene 209003..210163 /locus_tag="NT01SARS_0234" CDS 209003..210163 /locus_tag="NT01SARS_0234" /note="identified by match to protein family HMM PF00549; match to protein family HMM PF08442; match to protein family HMM TIGR01016" /codon_start=1 /transl_table=11 /product="succinyl-CoA ligase [ADP-forming] subunit beta" /protein_id="EJP71757.1" /translation="MNLHEYQGKLLFAEYNLPVSKGKVIFDAKDAIDACDEIGGDKWV VKAQVHAGGRGKSGGVQLIDNPEQAIEFAQKWLGNRLITYQTDAVGQIVNSILIEECT DIAQELYLSAVIDRDTQKIVFIGSSEGGVNIEEVAKNSPEKIIYQGVDLDDKDFSQHA ENIGKVLKLNPDQQNQFSPMLDNLVRLFVEKDLSLLEINPLVITKNGDLHCLDAKINI DSNALFRQPELMEMHDESQEDPQEAEAAKHDLSYVSLDGNIGCMVNGAGLAMGTMDTI KFFGGNPANFLDVGGTATQERVAKAFKIILKDPEVKVVLVNIFGGIVRCDLIAEGIVA AIKEVGIEVPVVVRLEGNNAEIGAKILEESDIKVESINDLGSAAKKSVELAK" gene 210160..211029 /locus_tag="NT01SARS_0236" CDS 210160..211029 /locus_tag="NT01SARS_0236" /note="identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019" /codon_start=1 /transl_table=11 /product="succinyl-CoA ligase, alpha subunit" /protein_id="EJP71758.1" /translation="MSILVNKDTRLIVQGFTGSQGTLHSEQSIEYGTNIVGGVTPGKG GKIHLNKPVYNSVEEAVKEVSPNASIIFVPAKFCKASILEAAEAGIKLIICITEGVPT LDMLEVKKKVDELGVRLIGPNCPGVITPGEAKLGIMPGSIHLPGSIGIISRSGTLTYE AVKQTTDLGFGQSSCVGIGGDPIPGSSFIDMLKLFEEDEQTEAIVMVGEIGGNAEEAA ADYIKNNVNKPVISYIAGQTAPAGKRMGHAGAIIAGGKGTAAEKIKKLKECGVHVADN LVSIGSKVAEVLG" gene complement(211004..212377) /locus_tag="NT01SARS_0235" CDS complement(211004..212377) /locus_tag="NT01SARS_0235" /note="identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797" /codon_start=1 /transl_table=11 /product="multidrug resistance protein NorM" /protein_id="EJP71759.1" /translation="MQKYFFEFRQLIKIGIPIFGSQLSYALMGATDTIIAGRASANDL AGLAVGTAFSNTIWFFFTGIIFAVTPIVAQLYGAKKFLEIGKKLREILWVAAALGLFM AFIFFNMNIIIDLLPIKSSITSITIDYLKAVSIGWFFVTIFTCLRCYSEGMTYTKPVF YIAFAGMLLNIPLDLIFVYGYFGAPKLGGVGCGIATSIVSFIMMISIFIYINTSKNYK KTEPFAKFTLPSMNTTKEVFKLGLPIGLGIFIELSMFSGAAIILSVLGEIVVASHSVA INIASLFFMVPLAIGLASSTRVGNLIGEKNPKQAKVAATSTIMLCMTGAMINSIIIIL FGSFIVGLYTTELPVLELAISLIFFAAIFQLPDGIQMGALGSLRGYKDTFIPMILLLI SYWIFAMPIGYYLTNFGFGEPFGAQGMWYGMIIGLTIFSFLSIFRLIWIMNSKIKKNV NQELQPL" gene 212538..213164 /locus_tag="NT01SARS_0237" CDS 212538..213164 /locus_tag="NT01SARS_0237" /note="identified by match to protein family HMM PF00132" /codon_start=1 /transl_table=11 /product="hexapeptide repeat transferase" /protein_id="EJP71760.1" /translation="MLGKGGAYFKPRYIKVFGKNVSIDDYPTLIGAPDAYIQFTSWNI GDNKGVINIGKYCLITPGVRIMAAERIEIGDACMIAHGAYLSDADWHGIYDRAEPVGK TKPIVLKDNVWIGDSAIICKGVTIGKNSIIGAGAVVTKDVPENSIYAGNPAKLVKKLD DVSFNTRADFFENPKQLAHDFDMLDRYTLGKNSFLNWIKSIFIPDDSH" gene 213292..213681 /locus_tag="NT01SARS_0238" CDS 213292..213681 /locus_tag="NT01SARS_0238" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71761.1" /translation="MKKIDKSFLEKALALINTVLFSMDHPKSPESMNFFQADTYRFYF LMSFMKEYFDGNEISQEYAISLVPQKYASRIKRLQILKQAVRLNYIIETQSLQDKRRR IYQPSDILIDDFIAYANNVDQNMRKAS" gene 213737..214132 /gene="msrB" /locus_tag="NT01SARS_0239" CDS 213737..214132 /gene="msrB" /locus_tag="NT01SARS_0239" /EC_number="1.8.4.-" /note="identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357" /codon_start=1 /transl_table=11 /product="methionine-R-sulfoxide reductase" /protein_id="EJP71762.1" /translation="MSKVYKDESEWQKLLDDESYRVTRLAGTERPFSGKYWDFKESGS YKCICCGEHLFDSSSKYDSGCGWPSFFIPSNEESIDEYEDNSFGMQRIEVKCSKCDAH LGHVFNDGPQPTGLRYCINSASLDFEQDK" gene 214161..215684 /gene="mviN" /locus_tag="NT01SARS_0240" CDS 214161..215684 /gene="mviN" /locus_tag="NT01SARS_0240" /note="identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695" /codon_start=1 /transl_table=11 /product="integral membrane protein MviN" /protein_id="EJP71763.1" /translation="MKSISTVGAWTGLSRIFGLIRDISTTSLLGASVFHDIFVITLKI PNMFRRFFAEGAFNQAFVPIYADFQKNNDVKETINYLNSIAGFLITFLFFFSLLVLIF APIFILIFAPGFYFDPTKKDIAITTLRIMFPYLALISLVAFAGGIQNSHGKFSIPAAT PMIFNLCLIISAVYVAPKYNMPVYVLAWGVLLAGFIQLLVQYFPLHTIDRIPRPKLNL DNTGLKKFLKLILPAILAGGIIQINLLIDTIFASLLETGSPTWLYVSDRLIQFPMGIF AIAIGTVLLPSLSNIDVNNDKVSFIASLQKGQRFVIFIGIPSLIGLFFCAEDLISTIF FRGEFKVTDVYQSSYSLMAFSFGLPFFMLMKVLTPAFFARKDTKTPMYVALLSLLINA ILNYVLAFIFDYGHVGIAIGSSVAALLSVLILEIILLRDGFIEIKNPLNRFNFAIMMA SSFLILFLYNFTNKTELISMTQIERLIYLGFEIIIAISIYFIVARLVSGKSLIKQFN" gene 215686..216636 /gene="ribF" /locus_tag="NT01SARS_0241" CDS 215686..216636 /gene="ribF" /locus_tag="NT01SARS_0241" /EC_number="2.7.1.26" /EC_number="2.7.7.2" /note="identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibF" /protein_id="EJP71764.1" /translation="MYLIRGQHNLELFNKKFPNEKLCGTIGNFDGLHLGHQAILKKIK LNAEKFDAKTIVFFTEPHAAEYFATVKKNNMEAPPRIFPWRKKVMLLKDFGINYAFFL KFNNSLRTMTPDEFITEILESINLVSFTVGDDFRFGADRKGDTNLLRDWGNEKKILIE NTDTVLFKSERVSSTRIRKLLLENQFSDAEKMLGRPYVISGKVVFGQQLGRTIGIPTA NIWLPKQKLPISGVYAVECMHLGNKIYGIANMGIRPTVGGNTPVLEVHLFEFDKDIYS ERLDVKFIKKIRDEKKFDNLDMLKSQIQTDISKAKEILYK" gene 216638..219409 /gene="ileS" /locus_tag="NT01SARS_0242" CDS 216638..219409 /gene="ileS" /locus_tag="NT01SARS_0242" /EC_number="6.1.1.5" /note="identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392" /codon_start=1 /transl_table=11 /product="isoleucine--tRNA ligase" /protein_id="EJP71765.1" /translation="MTTNYRDTLNLPETQFSMKAGLPQKEPEILNFWNQNDIYKKIRE KYSDSELFLLHDGPPYANGAIHLGHSVNKILKDITIKYKTLKGFNAPFIPGWDCHGLP IELNVEKKHGKNSELVQDKESFQKACKEYAETQINNQMDDFKRLGVFGDWENSYKSLD SSFEAEIIRSLGTIYDAGHLEKGEKPVHWCQVCSSALAEAEVEYMNKISKSIDVAFYV KDESMEALKKIFNLNEINDVAFVIWTTTPWTIPSNVAVCVNESLKYSLIEVDNNFFVI ASDMFDECMSRWSKTGNRIAECQGKDLEMLSLQHPFIDRDSIVLLGDHVTTESGTGCV HTAPAHGLDDHFICKKYNVETFKALNNRGLFKDDFDFIAGLPPIKADEKIIEKLQKEN MLINVEDYDHSYPHCWRHKFPLIFTSTPQWFISMNKNDLLKKAQNFVNKVNWEPGWGL QRIESMLDDRPDWCISRQRNWGVPITLVVNKDSGEIHPDQSNLFGIFADLIEKDGISA WDKVDLNDYIDDANDYIKITDSLDVWFDSGVTHAAVSAKRFSKDIIADLYLEGSDQHR GWFQSSLLTSIAMSGNAPYKSVLTHGFVVDEDGKKQSKSLGNVVSPQKVWDNLGADIL RLWVASTDFRSEMVASDEILKRTSDQYRRIRNTFRFILGNLNDFSEKDAIEIDKLVEL DKWIINSVRDLERKVLDYYDSYSYHRAVQLIHNFCVNELGGTYLDITKDRLYTSKKES HARKSCQTSLCFVLNKLVRLVAPVLSYTAEEIWQSTNILNSEATSVFLSTFNENYDEI DSQISKEEWTRIFEIKEQVNQAIETLRNENKLKGSLDAIVKISAKDQDKKILDKFNDE LHFLFITSEAKTIKGKKLEIEITSSEHEKCIRCWHKDVSVGTSKKHNEICNRCIENIE EDGEKRQFV" gene 219366..219881 /locus_tag="NT01SARS_0243" CDS 219366..219881 /locus_tag="NT01SARS_0243" /codon_start=1 /transl_table=11 /product="signal peptidase II" /protein_id="EJP71766.1" /translation="MKILKKMEKKDNLFNLKSFVFIIFCVLLDIWTKQLAINNLILGE TQEFIVPFIDLLLIYNSGIAFGILDNNDYMTSIILLLIGISIVIYLLYLSLHEEHRFK KLALITIVAGAIGNIIDRGMDGYVTDFLHLKINDFSFFIFNLADAFISIGAIIIIFFE LKSSSSYDKAN" gene 219865..220803 /gene="ispH" /locus_tag="NT01SARS_0244" CDS 219865..220803 /gene="ispH" /locus_tag="NT01SARS_0244" /EC_number="1.17.1.2" /note="identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-enyl diphosphate reductase" /protein_id="EJP71767.1" /translation="MTKQIKLANPRGFCAGVDRAIDIVNKALDIYGAPVYVKHEVVHN KVVVEDLKSRGAIFVEEINEIPDDSLVIFSAHGVSSKVEEETKSRNLNFFDATCPLVT KVHMEVIKHAKAGRDIILIGHEGHPEVEGTMGRHINNDNSSIYLVQNENDANSIKLNK KNELAVVTQTTLSVDETKSIISILRDRFPKIITPKKDDICYATQNRQDAVKQLALESD FMIVVGSKNSSNSNRLKELGENCGCKSVLIDEFNDLDLDVIKKFSRISITAGASAPES KVMEIAQSLESYIGAEILEYGEDNEDIFFKLPPGLR" gene 220804..221343 /gene="ampD" /locus_tag="NT01SARS_0245" CDS 220804..221343 /gene="ampD" /locus_tag="NT01SARS_0245" /note="identified by match to protein family HMM PF01510" /codon_start=1 /transl_table=11 /product="protein AmpD" /protein_id="EJP71768.1" /translation="MEIENHIFKESNYVKSPNFNNRPNSSDIRLIVIHCISLPPNNYG GDYVKDFFLNKLEHSEDEYFEGIKDLKVSCHLFINRTGELLQFVPFDKRAWHAGESAY KGEVNCNDYSIGIELEGNEIDPYTDEQYISLIKVTRELINFYPKVNSQNIVGHSDIAP DRKTDPGKSFDWNRYLSNL" gene 221340..222596 /locus_tag="NT01SARS_0246" CDS 221340..222596 /locus_tag="NT01SARS_0246" /note="identified by match to protein family HMM PF07690" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="EJP71769.1" /translation="MINQNILKIIAFTGYGFASGLPYVLVVITLTAWLRDIGIDLSLI GFITWVSLTYSLKFLWAPFVDRFSIPIFNRFGARRSWILSMQIVIFIFLLIISEIDPQ ANIKYFAFVAFIIALAGSIQDIAIDALRIESAEIEDQGNLAAGYQFGYRIAILVASSL ALIIASNFSWTFAYKLMALITGLNIIITMIISTENKNLTLKKLNHIDTMIEPLKDFFE RFGLKMAAILLLIIASYRLTDIVMGPMANPFYIDMGYTLSEIGYIVKVVALISTIVGV FVGGILIKKYGLYKSLLIGAFLVMITNLLFSYTAITDKNLTLLASIVASDSLAAGIVG TVNITFLTSLVSQKYTGFQYALLTSVMTFTGTIFKGFSGVIVESFQSLYGFNYGWMSF YIFTSCLALPAILLIMSKKGFFVNSD" gene 222685..222936 /locus_tag="NT01SARS_0247" CDS 222685..222936 /locus_tag="NT01SARS_0247" /codon_start=1 /transl_table=11 /product="VanZ-like protein" /protein_id="EJP71770.1" /translation="MSFISDKFVHSLIYFYLAILGILSKFRFNDLKVVALIFLFGAFI ELIHYYHPYRLFEFFDLLANLIGVTIAFLIFRLKNKLTY" gene 222999..223286 /gene="groS" /locus_tag="NT01SARS_0248" CDS 222999..223286 /gene="groS" /locus_tag="NT01SARS_0248" /note="identified by match to protein family HMM PF00166" /codon_start=1 /transl_table=11 /product="chaperonin GroS" /protein_id="EJP71771.1" /translation="MNLRPLHDNVLVKRTEEEETSSGGIILSGSAKEKPSQGEVVAVG PGKLSDSGEATKMNVSVGDTVIFGQYGGNEIKLDGEEYLILSEKDIFGVVE" gene 223313..224956 /gene="groL" /locus_tag="NT01SARS_0249" CDS 223313..224956 /gene="groL" /locus_tag="NT01SARS_0249" /note="identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348" /codon_start=1 /transl_table=11 /product="chaperonin GroL" /protein_id="EJP71772.1" /translation="MSAKDVKFGDSARTQMLDGVNTLANAVKVTLGPKGRNVVLDKSF GAPTVTKDGVSVAKEIELENKFENMGAQMLKQVASQTSDEAGDGTTTATVLAQSIVNE GNKSVAAGMNPMDLKRGIDKAVSAAVEHVKGLSVPCTDDKAIAQVGTISANGDIAVGE IIAEAMEKVGKEGVITVEEGSGIENELDVVEGMQFDRGYLSPYFITNQDNMTVELDSP YILLFDKKISNIRDLLPLLESVAKAGKPLLIIAEDIEGEALATLVVNNLRGIVKAAAC KAPGFGDRRKAMLEDIAILTGGTVISEEVGLSLEGASVEDLGTSKRVVLNKDNATIID GAGDENAIATRVNQIRAQVEETTSDYDKEKLQERVAKLAGGVAVIKVGAGSEVEMKEK KARVEDALHSTRAAVEEGVVPGGGSALIRCLEAVAKLKGDNDDQNVGINIARKAFEAP LRQIVSNAGEEPSVIVNKVIDGKGSFGFNAATSEFGDMIEMGILDPAKVTRTALQAAG SVAGMMITTEAMVTDVPKDDTPMPPMPDMGGMGGMGGMM" gene 225062..225697 /locus_tag="NT01SARS_0250" CDS 225062..225697 /locus_tag="NT01SARS_0250" /codon_start=1 /transl_table=11 /product="transcription termination/antitermination factor NusG" /protein_id="EJP71773.1" /translation="MDLFTDQAFFRAFHILFGIAWIGLLYYFNFVQTEYVKVADPDAK ADVMKKLAPNALWWFRWAAFFTFLTGLILFYQITARIGTEIILGATMGTLMMLNVWGI IWRNQKIVLGMKEGDVAAAAAKAGLASRTNTLFSVPMLMYMVYSAHAQGSYLVLDDWS STSLIVGLIIIFAIEANAIWGKMLPVIASVRAVITSSFVLAIIFKIITDTL" gene complement(225711..226976) /locus_tag="NT01SARS_0251" CDS complement(225711..226976) /locus_tag="NT01SARS_0251" /note="identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471" /codon_start=1 /transl_table=11 /product="inner membrane protein YfjD" /protein_id="EJP71774.1" /translation="MQEDPSLIILLSTLIFLLILSGFFSGSETGMMAANKIKLKNLSK KSKTSAKRALNLLKRPDQLLSAILVGNNFANILASAIVTIIMLNYFGGNVLLGSIILT IVILIFSEITPKTMAAIKPESFATRSSFILNILVYVFKPLIFLTNFLSRLILKIFKLD AKDATLNDNLNTEELRTLLDESGDLIPKQYRKMLSSVLGMEELIVEDIMIPTAEIIGI DIDQDYENATKIIESTHYTRLPVFKGSIDNMIGILHLKNSHSFLEKYNQMDEDEIKNT LQKTYFVSQSTLLMKQLREFLSQNQSIALVVDEYGEIEGLISVEDIFKEITGKFGGDK DELEREFIKLKDGSILTDGNSRIRDLNNYLNWEINEDNSKTINGLITEYLDQIPQANL CIEIDNYRFEILEIDKNLISKIKIKKGSG" gene complement(226976..227542) /locus_tag="NT01SARS_0252" CDS complement(226976..227542) /locus_tag="NT01SARS_0252" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71775.1" /translation="MSFIAQVTISIVIYFLVRFFYKNEKSLNIAVAIGCLSYILIYLL TYEFISILPTIHFMVTGLSLLFIFVAYNEIIFLERKVKKIKEGELLSLESFSVEKYYK VVFKLLGIGLFFLSLALLSGLSLQTVFSSNLILKAIFTFLAWIIYLVVVVGIKYFNFP IKYATRSLFISMWAVLGAYYMNTYLVDS" gene 227645..228487 /locus_tag="NT01SARS_0253" CDS 227645..228487 /locus_tag="NT01SARS_0253" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S16" /protein_id="EJP71776.1" /translation="MVIIRLARSGAKKNPYYFITVADERRPRDGAFIERLGFFNPMAR GQEERLRLDLDKLNEWISKGAQVSDRVKALVKESKLTPEELEAKIAAKKARAEAKKAA IAEKLAKEAEEKAEQEAPAEESAPPEEATTDEAAPAEEAAPAEESAPAEEEAPAEEAA PAEEAPEEEAAPAEEAPEEEAAPAEEAPEEEAAPAEEEAPAEESAPAEEEAPAEEAAP AEEAPEEEAAPAEEAPEEEAAPAEEEAPAEESAPAEEEVAETEDQKSSDQVDEESSSE NEEK" gene 228474..228995 /gene="rimM" /locus_tag="NT01SARS_0254" CDS 228474..228995 /gene="rimM" /locus_tag="NT01SARS_0254" /note="identified by match to protein family HMM PF05239; match to protein family HMM TIGR02273" /codon_start=1 /transl_table=11 /product="16S rRNA processing protein RimM" /protein_id="EJP71777.1" /translation="MKKNNHTCIGSVGRSKGLNGEFYLNSFCNPKENIIDYIKDIVFL SDSKLEIEYIKKSANKLFSKIKNINDVDSVKEYTNQKLYLNMSSLPKLPMNEFYWNEL IGMKVEDENEKKILGIVKALENYGANDCLVVKPFNESIDNKTRLIPYINEIFIKSVDI KQNIIKVDWRSDY" gene 228996..229727 /gene="trmD" /locus_tag="NT01SARS_0255" CDS 228996..229727 /gene="trmD" /locus_tag="NT01SARS_0255" /note="identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(1)-)-methyltransferase" /protein_id="EJP71778.1" /translation="MRINVITIFPEIFDILNVGVISKSLKNKIIKLDIRDLRKNATNK HNNIDSKPYGGGEGMVMMAEPIVKTLKQIKKKERGPVIFMSPQGEKLDQKKVKSFSKL KNITIICGRYEGIDQRVIDKYVDEEISIGDFILSGGEYAAVCLIDAITRHIPGTLGNK DSYLKDTFSNGLLKGDVYAKPESFESMKVPDVLLSGNHKEIDSWREHNSLLKTFIKRP ELLNDVKLTKKQKKLLEEWASKDIL" gene 229747..230670 /locus_tag="NT01SARS_0256" CDS 229747..230670 /locus_tag="NT01SARS_0256" /note="identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L19" /protein_id="EJP71779.1" /translation="MSENKENEKKGFFSRLFGGSTASKDTEVAAENPVESIELPTKSA LNKMKKADIVALAKDNGLELDIGLTKPNLLKAWDEHFADTTDEIVSNEEAPAEEEVAS VEEEAPAEEAAPVEEAPVEEEASLAEEEAPVEEAPVEEEAAPAEEEVPAEEAPVEEEA APEEEAPVEEEAAPEEEESSEQEKQISLNEKSPSQIISSFESQQMKTDIPDFRPGDTL VVSVKVKEGERTRLQAFEGVVMGVKKAGLNSSFIVRKISSGIGVERTFQTHSPMIDSI KVKRKGDVRQAKLFYLRERSGKSARIKERLD" gene 230675..231565 /gene="xerD" /locus_tag="NT01SARS_0257" CDS 230675..231565 /gene="xerD" /locus_tag="NT01SARS_0257" /note="identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225" /codon_start=1 /transl_table=11 /product="tyrosine recombinase XerD" /protein_id="EJP71780.1" /translation="MLNPTNEDSDLRSFFNYLFVEKGLSKNTVEAYRNDLNEYLKWIN LQQISDYKLITEPQINDFIASLFKKNLKSTSVNRKISSLKAFYLFLVRKKKIQTTPLS EIITPKKEQHLPVSMSEDEVEKLLNSPDTSIHIENRDKAMIEMLYATGMRISELVNLK ITDIDNERSVLKVFGKGSKERLVPFGEKASDSLNSYLSERKKSLSKEVFLSNRGTKMT RSGFWQRIKIYLSRSGLKNSISPHTLRHAFATHLLNRGADLRSVQLLLGHSDLSTTQI YTHIAKHRLGEVLKKHHPRG" gene 231567..232280 /locus_tag="NT01SARS_0258" CDS 231567..232280 /locus_tag="NT01SARS_0258" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein DsbC" /protein_id="EJP71781.1" /translation="MKLKSYYLLTILFSLNLLSNEKDIKENIEKILPPEAKIESIEKS IFPGIYKVFYGDLQPLYVSEDGKLFIYGDMFQISENEILNITDKEIAYKRNEILKELD QNTLISFLSDKESHRITVFTDVDCGYCRKLHDQIGEYNKLGISIDYAAYPRSGIGTNA FTKMVSAWCSVNPHKALTDLKKGKEINVKFCENQPIAKHYTIGKKIGISGTPAIITSS GELLPGYISPDELYKRLRG" gene 232282..233544 /locus_tag="NT01SARS_0259" CDS 232282..233544 /locus_tag="NT01SARS_0259" /note="identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447" /codon_start=1 /transl_table=11 /product="homoserine dehydrogenase" /protein_id="EJP71782.1" /translation="MSTLKIGICGWGNVATGLYKIAKNNIESIKKQGNLDIEIVVIGA RRDNPNCKPENVIIERDIFNVVNHDIDVMVELIGGVDVAKDLILKALKKKKHVVTANK AVIYNHGDEIFACAKENGVKVLFESSVCAGTPIIKLLTEELSANKISKISGMLNGTSN FILSNMEDGAEFQSTLELAQKEGYAEPDPSFDIEGMDAAHKIGILSSLALGTSLPPDD FYVQGITNIKKIDFKYADEMGYTIKHLAVAEQNSKEVVLRAHPVLIAKDSYLANLKSV RNGIEVETDLLGTLHLAGSGAGQESTASGIISDLVHLANSSEEHLKAASNEKVILSEF LNLTFQYYFYIEAEDIPGVMASITSVFADKSVGLETIVQKENLDENFVPIVIITDPFK EQDHSNLIENLEKLDSIKSVRTIRIEQD" gene 233547..234932 /gene="thrC" /locus_tag="NT01SARS_0260" CDS 233547..234932 /gene="thrC" /locus_tag="NT01SARS_0260" /EC_number="4.2.3.1" /note="identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260" /codon_start=1 /transl_table=11 /product="threonine synthase" /protein_id="EJP71783.1" /translation="MLFHSTRGQDKDKTFEQILMQGLADDGGLFMPDYWPQVDIEYLK NLESFIDVAKYIVPLYTGSSFKKEDVIELLNNTWHNFEEQDLIKITQIKQSTSILELY HGPTAAFKDFGLQLAAAFFNKTLQTQNKTAIVFGATSGDTGSAAIDACKDFDVIKSFI LIPHGNMSEIQRKQMTTVQSPNVHPIIVDGTFDDCQDIVKNGFKQRSFLKKNQYLLAV NSINWVRIIGQICYYFYSAIKINKLSKPLNFSVPTGNFGNVFACYAASKMGMPLSKII VAVNSNDILYRFFKNNDYSKKTVSETISPSMDISVASNFERLIYDFFLNSNSELCNKL YNNFPEISIKLEDSIWKKSSELFLSHSVDDDATIQCMKSFYEQHGFIIDPHTAVAAHA VNRLEEELMNETVILSTAHPAKFPNILRNADLKLKNIPKRLDEVKNKKEVAVNIPSSD KLIFEYIIKHN" gene 234935..236032 /gene="prfB" /locus_tag="NT01SARS_0261" CDS 234935..236032 /gene="prfB" /locus_tag="NT01SARS_0261" /note="identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020" /codon_start=1 /transl_table=11 /product="peptide chain release factor 2" /protein_id="EJP71784.1" /translation="MDAQELKATLLDLKSRLEDIKVNVFQIEDKKKRLEEIENELSQE KVWSDLELSQKLSKEKTNLQKIISKYQTVDQKVSDSEVLIDISIEEKDDSAIKEVNQE VLEIFELVEDFEFSRMFNKKMDGSSAFIEIQAGSGGTEAQDWAEMLMRMYSKWAESRG FNIKVVEISHGDVAGIKSASIYVDGDHAYGWLRTETGIHRLVRKSPFDSGNRRHTSFA SVFISPEVDDSIEININKADIRTDTYRASGAGGQHVNKTDSAVRLTHIPTGLVAQSQS DRSQHKNKENALKQLKSKLYELELQKQNEEQQMLEDSKSDIGWGSQIRSYVLDQSRIK DLRTNHETGNTQAVLNGDLDDFMKSSLKAGI" gene 236033..237523 /gene="lysS" /locus_tag="NT01SARS_0262" CDS 236033..237523 /gene="lysS" /locus_tag="NT01SARS_0262" /EC_number="6.1.1.6" /note="identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499" /codon_start=1 /transl_table=11 /product="lysine--tRNA ligase" /protein_id="EJP71785.1" /translation="MDKENLSGEKALIEERRKKLEQLRDKGDAYGNSFKPKNNASKLH EEYGVFSKEDLEKKDIKNISVAGRIVLKRVMGNASFATLRDSSGDIQIYVTKNNVDES VYEDFKTWDLGDIVGVSGSLFRTKTDELTIDVWDLEMITKSLRPMPEKFKGLTDIEAR YRQRYLDLMTNNETKEVFVKRTKIIDSMRKKMNECGYLEVETPMMHPLAGGAVARPFV TQHNALGQDLYLRIAPELYLKRLLVGGFDRVFEINRSFRNEGLSTKHNPEFTMMEWYQ AYASMQDQMDLTKEIITNAADAAGCKSKIQWGDLEINLDNFKQSTLSDLILDFNSELS KDDLSNQKKLEKILKDKKVKIEKNWGIGRILLEVFEETVEDQLIDPTFVTEYPVEVSP LSRRNETNPDYADRFELFIGGKEFANGFCELNDPDDQASRFEDQVAAKDSGDKEAMDY DHDYITALEHGMPPAVGVGMGVDRLVMLLTNQSSIRDVLLFPQLKS" gene complement(237532..237993) /locus_tag="NT01SARS_0263" CDS complement(237532..237993) /locus_tag="NT01SARS_0263" /codon_start=1 /transl_table=11 /product="helix-turn-helix, AraC type" /protein_id="EJP71786.1" /translation="MIKKEKILYSYLSNIIEDENPNTIFVNTTRDISKLVKRIEKLNI QSLQIGPDIEQISNENFDLFIILDDIQTSEPYIGMIKNLISHKIAIFTNFKNNNLINE TMLKLGFETELLDKSNGLKCFSYNLKTYNNKRTWNNPKGWANPENFDKFRW" gene complement(237990..238988) /locus_tag="NT01SARS_0264" CDS complement(237990..238988) /locus_tag="NT01SARS_0264" /note="identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01759" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="EJP71787.1" /translation="MSKSIKVVVTGAAGQIAYSLIPRLVDGKTFGDKIVNLALVEIPQ VVDKLEGLVMELEDSYFPNMGEVTYTDNFEEASKDADWFLLVGSIPRGIVYNGKKIEE RSDLLSINGGIFVDQGIAIGRYGKKNAKILVVGNPANTNAFIGKHAANNDSQLWMAMT MLDANRAKSILAKKTNNNVSDIKNMIIWGNHSPTMYPDSENVQILGELGSSVINDINW VESDFIPKVQQRGKAVIDARGASSATSAAKAAIDTVIACENPTDPGDCFSAAIASDGS YDVPKGIICGYPLMTLEDGSIEIKRDISLSEFAKNKFQISIDELLSEREAVKHLMQ" gene 239134..240033 /locus_tag="NT01SARS_0265" CDS 239134..240033 /locus_tag="NT01SARS_0265" /note="identified by match to protein family HMM PF00106; match to protein family HMM PF08659" /codon_start=1 /transl_table=11 /product="D-bifunctional protein" /protein_id="EJP71788.1" /translation="MTIRFDDKVAIVTGAGGGIGKEHALELARRGAKVVVNDLGGTVD GSGASDAANEVVDLIKSEGGEAIANGASVTDLDAVKAMVNQAMDEWGRIDILVNNAGI LRDKSFHKVTLEDFNLVMDVHFQGSLNCTHTVFPIMREQEYGRIVFTSSSSGVFGNFG QTNYGSAKMAMIGLMNTLKLEGQNKNVFTNSITPVAYTRMTEGLIPEDFGKNLQPEFV TPAVIYLASENAPNGVIMAAGAGVFSRIFIHETMGISLGMGEDMTPENIQASWDKISD MEDARALQNGGEQTLKFFELINK" gene complement(240036..240647) /locus_tag="NT01SARS_0266" CDS complement(240036..240647) /locus_tag="NT01SARS_0266" /note="identified by match to protein family HMM PF00043; match to protein family HMM PF02798" /codon_start=1 /transl_table=11 /product="glutathione S-transferase 2" /protein_id="EJP71789.1" /translation="MKLYSSPVAPSPRKVLIFIAEKGIENIEVENLDIGKMEHKTPEY KEIAPNSRIPALVLDDGEVILETTAICRYLECLNPEPNLFGTNPDEIAQIEMWYSRIS FELMMPLMHGFRHTHPHMSALEDQNNEFGLAQRELALKSMKYYDSVMDGKDFIACNKF SYADIQAVTSLQFLVRLNKINIEDYENLSRYTNDIGSRPSFSA" gene complement(240651..241928) /locus_tag="NT01SARS_0267" CDS complement(240651..241928) /locus_tag="NT01SARS_0267" /EC_number="1.17.4.1" /note="identified by match to protein family HMM PF00268" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase, beta subunit" /protein_id="EJP71790.1" /translation="MLNWDDYGKEDNTTPQSSPQIDNEVVKKTAEAVAEEKSVTQQAV KEETPQANTNIGEGSRAEAARKAVNALDETAGNEELDEMMANAGRVQVDQKMMINCKA DLNQLVPFKYDWAWQKYLDGSANHWMPQEINMTNDIVLWKSEDGLTEDERVIVKRNLG FFSTADSLVANNLVLALYRLITNPECRQYILRQSLEEAIHTHAYQYCIESLGMDEGEI FNMYREVPCVARKASWGLKYTQEISDPDFKTGTVESDKQLLKNLIAFYCVLEGIFFYC GFTQILSMGRRNKMTGTAEQFQYILRDESMHVNFGIDVINQIKIENPHLWDDQMKSDA AQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLKFIANRRLTQLGLDEEFTGVTNP FPWMSEIIDLRKEKNFFETRVTEYQVGGALNWE" gene complement(241945..244818) /locus_tag="NT01SARS_0268" CDS complement(241945..244818) /locus_tag="NT01SARS_0268" /note="identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF03477; match to protein family HMM TIGR02506" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase subunit alpha" /protein_id="EJP71791.1" /translation="MEVQQQEKQVENNQQNIKDIETTAPGKLRVIKRNGKVVAFEDDK IKVAITKAFLATESGNAAASERIHKKVNQLTENVVEVFQRRMPSGGTLHIEEIQDQVE LQLMRSEELDVAKSYILYRAERTQERKKEKLEIELPDTPSINITKSDGTVVPLDVEKV AGLISDACENLDEVSINEVLDEALKNLYDGVSIADMRTSLVMSARTKVEKEPNYSYVT ARILMDQIRSEALNFLNIAEESTYQEMEKYYPEAFKAYIDKGIELDILNPELKTFDLD KLSQAIDHTRDNQFTYLGLQTLYDRYFIHCDDVRYELPQVFFMRVSMGLALEEENRED RAIEFYRLLSSFDYMSSTPTLFNSGTKRPQLSSCYLTTIPDDLDGIFSAMKDNALLSK WAGGLGNDWTPVRAMNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCGYLE TWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLFMKRVEQDENWTLFSPGEAPELH DLVGKAFEEKYEEYEDKAKKGEMNQFKSIPAKELWRKMLTMLFETGHPWITFKDSCNL RSPQQHSGVVHSSNLCTEITLNTSADKEIAVCNLGSVNLANHMKDGSLDEEKVKQTVS TAIRMLDNVININYYSVDTAKNSNFKHRPIGLGLMGFQDALYLQDIPYCSDEAVEFAD RSMELISYSAIYASTELAKERGAYESFEGSLWSKGILPKDSIDILSENRGSEYLNVDR SETLDWETLRKKVIKDGMRNSNVMAIAPTATISNITGVTQSIEPTYQNLYVKSNLSGE FTIVNPHLVRKLKELDLWDDVMINDLKYFEGSLSEISRIPDDVKKLFSTAFEVEPKYI VESASRRQKWIDQAQSLNLYIGNADGKKLDITYRMAWYSGLKTTYYLRSIAATSTEKS TVQQGKLNAVSSEVSQPAAQELGAPAPVPTACSLDDPDCEACQ" gene 245082..246536 /locus_tag="NT01SARS_0270" CDS 245082..246536 /locus_tag="NT01SARS_0270" /note="identified by match to protein family HMM PF00370; match to protein family HMM PF02782" /codon_start=1 /transl_table=11 /product="glycerol kinase" /protein_id="EJP71792.1" /translation="MKNYLSIDQGTTSSRSIIFNSNLEKQIDSQLEYKLDYPDDGWVE LRPDDVVNTVKKTIANVLDNFNGSIEACGITNQRETTIVWSRDTGEPIYPGIVWQDRR TNEYCQELKSNGYEKKVSEKTGLVLDPYFSATKVKWILDNVEGAKERAQKGELAFGTV DSYLIFKLTKEKNHLTDVTNASRTMLFNIHNKEWDQELLDIFEIPNSMLPEVLFCDGD YGTIVHSDKKIPIRGVIGDQQGALVGQDCYEYGDMKSTYGTGCFLMVNTKDEAVKSDQ GLLTTIAYGLNGNVSYALEGSIYSSGNIIQWLRDKMKFFDDAKESEKYINASGNSNNV LFLPAFNGLGAPFWDSNIRAGFKGITQDTSINDIVTAAFHSIAFQTKEITKVLETNNI NINKLLVDGGMVANESFCQMLADTLQKNIKRPANVESTALGACKVAMMASGENISEIK SNSSNFEPNKSLENIYSINYNNWKEYINKNLSKS" gene complement(246533..247153) /locus_tag="NT01SARS_0269" CDS complement(246533..247153) /locus_tag="NT01SARS_0269" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00005" /codon_start=1 /transl_table=11 /product="molybdenum ABC superfamily ATP binding cassette transporter ModC" /protein_id="EJP71793.1" /translation="MSLVINKLSSSIDNKILFNEVSFTITNGNFGLLTGESGIGKSTL LNNIAGLNKPDFGEVILNKKVLSNEATFLPPEKRKIGFVFQDFALFPHINVTKNILFS ETATENDLYFEVINELKLESHLLKKPHQLSGGLKQRVAIARALLMKPDLLLLDEPCSN LDTQNSDNVKSLLKEYVSSQKIPCLIVSHDTDMFEEINISENIILN" assembly_gap 247381..248014 /estimated_length=634 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 248021..248683 /gene="ung" /locus_tag="NT01SARS_0272" CDS 248021..248683 /gene="ung" /locus_tag="NT01SARS_0272" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03167; match to protein family HMM TIGR00628" /codon_start=1 /transl_table=11 /product="uracil-DNA glycosylase" /protein_id="EJP71794.1" /translation="MKISIPKNWIEAFKKNNLDTNLDLPIKNISKELEDNKKIAPNIN NIFRAFELCEYESTKVVIFGQDPYFQSGYANGLAFSVNEHIPTPASLKNIYSEIKNDI GILHNSIGCLEGWAKDGVLLLNSSLTVEISKPGSHSKIGWHKFITNVVKLLSNKKNIV FILWGNHAQSFKHLINQNENLVLCSSHPSPLSAHRGFFGNKHFSKCNQYLADKKIQPI KW" gene complement(248685..249470) /locus_tag="NT01SARS_0273" CDS complement(248685..249470) /locus_tag="NT01SARS_0273" /note="identified by match to protein family HMM TIGR03317" /codon_start=1 /transl_table=11 /product="tRNA-modifying protein YgfZ" /protein_id="EJP71795.1" /translation="MKINNLKKLIQSGSIHLKNSCVIEIIGDKDKVFDLLQGQVTSDI KLLEDGQSQLSCICNHKGMIMADFIIIFDGECYKLVVKENIEDILIKELTPFANLSSV KLLKSKLKVIGTISHTKIPNSYLSNELFSTCVDLKDAYESNNEISEDVWEASNKLLGN YFLEESDISKFRPQELNYDELRVSFDKGCYRGQEIVARMRYLGVNRRKFLTFVVNDDY VDSEDIKLIGNKIKINKNYIFNGIILRDQLDTIKKLPGIELIS" gene 249505..249762 /locus_tag="NT01SARS_0274" CDS 249505..249762 /locus_tag="NT01SARS_0274" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71796.1" /translation="MNEEINRIRWKCRRGMREIDLLLREFSITKLETLNEDELSIFSD ILNYDDQKLYDFIFKKDNLGNKFHEDFIENHLKKFTHQGNF" gene 249801..250376 /gene="algU" /locus_tag="NT01SARS_0275" CDS 249801..250376 /gene="algU" /locus_tag="NT01SARS_0275" /note="identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma-H factor" /protein_id="EJP71797.1" /translation="MKNISNNNDSELVEKAKKGNEMAFNFLMNKYYARVYASLLSFTK SHQDSEDLTQQTFLKVWQQLKTFRGDSAFFTWVYRIAINLAKNYVSSSGYKKQKLNIS VEDSEIEINSFKDIELELMHDQSLKNIKFFIDSMPESLRTAFTMREQEGLSYDEISKI TETPIGTVRSRIFRARESILEYINTELITND" gene 250369..251055 /locus_tag="NT01SARS_0276" CDS 250369..251055 /locus_tag="NT01SARS_0276" /codon_start=1 /transl_table=11 /product="anti sigma-E protein RseA" /protein_id="EJP71798.1" /translation="MTDIKEKLSALYDGELESSQIDDLLEECRNNDELIRSFSLYGLI SLSLNQESKISQISQSRRRPKRRGFADIWLSNAVTAAASIILTLFAVNNVDFSRMSIN IDSTNQIASAVNSQEAKQTAENSSEYLVDHVMNVINDPSFMNSKSKVDLQNVGYRINQ SSNPEYSNGVQKFKLRIENRDFGLNQIRYWKHGNKMIYVVPISNGRAVTLYGNISLPT AIQIANSINK" gene 251064..252467 /locus_tag="NT01SARS_0277" CDS 251064..252467 /locus_tag="NT01SARS_0277" /note="identified by match to protein family HMM PF00089; match to protein family HMM TIGR02037" /codon_start=1 /transl_table=11 /product="serine protease MucD" /protein_id="EJP71799.1" /translation="MKILNLKHIFLLVCLSISNEVFSSALPENISELVDSSAPAVVNI TAKKEVSQRQSFGYGGIPDEMLERFGIPRQYREMPQQKREATSYGSGFILKDNYIMTN FHVVEDATEVIISLSDRREFIAEVVGVDPLSDLAVLEVSDDDLPTVNVGNSDELRVGD WVIAIGSPFSFDFSVTAGIVSAKGRSINNNNIGNYVPFLQTDVAINPGNSGGPLFNLD GEVVGINSQIYSRSGGYQGLAFAIPINVAMDVADQIINDGEVSRGYLGVRMSEVDSDL ADALGMEKPYGALINDIEEGESADLAGLMPGDVIVEFDKKQIKFSSDLPHVVGQIKPN TNAKAIVIRDGDEIELEFVLGELPVNNESFIPAKINTSSDPIGLKVAEIDRDNPSMSN LPDGVIVSRVNPNSPASGKLNRGDLITMIQHKGKKFKVYDVDTFDEAVDNFSTGEKIA IHIIRNGTRLIRSITLN" gene 252518..254305 /gene="lepA" /locus_tag="NT01SARS_0278" CDS 252518..254305 /gene="lepA" /locus_tag="NT01SARS_0278" /note="identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393" /codon_start=1 /transl_table=11 /product="GTP-binding protein LepA" /protein_id="EJP71800.1" /translation="MENIRNFSVIAHIDHGKSTLSDRLIEFCGGLSSREMEDQILDSM DIERERGITIKAQAVSLKYKLNNKEYLLNFIDTPGHVDFSYEVSRSLSACEGALLVVD GSQGVEAQTLANCYTAVEEGLEVLPVINKIDLPQAEPDRVKNEIEEMVGINASKSPLV SAKTGEGVEELLKMLISEIPSPIGDPNSKLQALIVDSWFDSYLGVVSLIRVKNGKIKT GQKFKIFSTGQSYNVDDIGIFSPKKTQKKELSAGEVGYLVAGIKEIKGAPVGDTIIDA GDEKTTALSGFKKVNPKVFASIFTLNSDDYEKFRDALSKLVLNDSSLIYEPEVSDALG FGFRCGFLGTLHMEVVRERLEREYDLDLISTAPSVEYEVLKTDGSIIKCDNPSQLPVP NEIDEIREPIVNTTIISPNEYVGNIITLCTSKRGVQKDMKYFGNQVSIIFEMPLSSVI IDFFDQIKSSTKGFASIEYTLLGFQKSDLTKIDVLINNNKIDALSMIVHKSFSNSKAR EIAKNLQKLIPRQMFDVPIQVALGAKIISRETVKAYRKNVTAKLYGGDVTRKMKLLEK QKQGKKKMKQLGKVSIPQDAFLNYFSSNE" gene 254307..255254 /locus_tag="NT01SARS_0279" CDS 254307..255254 /locus_tag="NT01SARS_0279" /note="identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227" /codon_start=1 /transl_table=11 /product="signal peptidase I" /protein_id="EJP71801.1" /translation="MFTDPLFLLGLFGITMSVISWIKFNLDENNDEPFLIKYLSFISL ISAIALLLSIFYNSGDLGIVLLVGAIVSFFVMLLGYYFKSSEIISSSRGYFIPLFLIF VLRTFLYEPYQIPSGSMEPQLKKGDFLLVNKYAYGLKINRIGTPNLLRNDPEYGDLVV LIPPHNPVPYIKRLIGKPGDVIRIINKKIYVNGAAIDRKFIKSEDSIINRRFRYSSGE IVTREIDVVIDLYQEKHGNAEFTIKNTRGENDQFPQEWTIPNGHYFVMGDNRDNSNDS TKDVGFVPRENFFGRADVLFMTWECWTCIPSFSKAGSLD" gene 255254..255904 /gene="rnc" /locus_tag="NT01SARS_0280" CDS 255254..255904 /gene="rnc" /locus_tag="NT01SARS_0280" /EC_number="3.1.26.3" /note="identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191" /codon_start=1 /transl_table=11 /product="ribonuclease III" /protein_id="EJP71802.1" /translation="MSLDDLSKKIGYEFADIKLLELAITHKSADSKSNNERLEFLGDA ILSTVVSEYLYTKFPYQKEGLLTRMRSHLVKGDTLTRIAYKLELTNFIKLSKGTANLS SERKQSILEGVVEAIIGAVMLDSNWETSKKFVLKLLKKELSKISIDKEFRDSKTELQE LLQSKKIDPPVYETTELDDGFKSSIKYEDKIFKAKGNSKRDAEREVAKKALKFIKI" gene 255906..256811 /gene="era" /locus_tag="NT01SARS_0281" CDS 255906..256811 /gene="era" /locus_tag="NT01SARS_0281" /note="identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436" /codon_start=1 /transl_table=11 /product="GTP-binding protein Era" /protein_id="EJP71803.1" /translation="MSKKYCGYISIIGKPNVGKSTIINSILEKKVSITSRKSQTTRNN ILGVKTVENRQLIFIDTPGMHVKSQKTMNKILNKSAQSIIEDSDIVVFVLQRLSLDNE DISIIKKLKETNPFVICVINKIDQISKKDKLLPFIDDITKMYNFASIIPISAKTKQNL NELVNKISENLPENEHIYKDNFNIEKGNEFMFSELIREKIIRKLGDELPHDTFVEIEE IDIKNNITHISAVIYVNRKSQKQIVIGSGGEVLKRIGKDARRDIEKIINAKVFLKTWV KVKKNWNTDSNFIQSLGVGGNYESS" gene 256789..257490 /gene="recO" /locus_tag="NT01SARS_0282" CDS 256789..257490 /gene="recO" /locus_tag="NT01SARS_0282" /note="identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613" /codon_start=1 /transl_table=11 /product="DNA repair protein RecO" /protein_id="EJP71804.1" /translation="MGTMSQVNTDECFLLHQRSYGETSLISEVFTRKKGKMSLIAKGA KNPKSKFFGYLVPFCKLNVTYSGRSDLKTLTSIDRDLTNFNKTLSKKTYSLLYINELL IKLLPKDASHEELFELYENFLKDVTEEKNLEITLRHFELDLLDMLGYGLDFERDIDNN ENIQEQERYSFISEKGFRKTDNADLTGEDIINIKNRNLANVPKILLKEITSKAISFCL DGVELSSRQIFRSIK" gene 257490..257867 /gene="acpS" /locus_tag="NT01SARS_0283" CDS 257490..257867 /gene="acpS" /locus_tag="NT01SARS_0283" /EC_number="2.7.8.7" /note="identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556" /codon_start=1 /transl_table=11 /product="holo-[acyl-carrier-protein] synthase" /protein_id="EJP71805.1" /translation="MIFGVGTDLVEIKRIHEMKSYESFAIKILSEEELFVFNELSKPK KVNYLSKQFAGKEAFAKAFGTGIRKDLNFKAIKILRDNLGKPFFEFDSNLQKVIDDFG ITRSHVSLSDESEYALAFVILEK" gene 257864..258508 /locus_tag="NT01SARS_0284" CDS 257864..258508 /locus_tag="NT01SARS_0284" /note="identified by match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="EJP71806.1" /translation="MKNIILLGPPGAGKGTQADLICDLCDIPKISTGDMLREAVASES DLGLKVSNILDSGGLVSDEIIGSLIKDRLNMPDCENGSLFDGVPRTIGQAEQLANMGI DFTHVIEIHVDDQDIVNRMSGRRVHPGSGRNYHIEFNPPENEGIDDISGEPLIQREDD KPETVLKRLNVYHEQTKPLTDFYKNLADKGILIFYKVDGSESVETVFKNISDNL" gene 258509..258940 /locus_tag="NT01SARS_0285" CDS 258509..258940 /locus_tag="NT01SARS_0285" /codon_start=1 /transl_table=11 /product="peptidase, M22 family" /protein_id="EJP71807.1" /translation="MNILAFQSSGDQTSVSIMLDDEINSFNYKHNRKDRPNWNMFLEN IGLNNAFALEDVDLFAFSNCQNSYTATRSIASYLKGVAVACKKPLIVIEDDNSVFLES SDVAKLAKDKFDKNNQDVARFDPNFANPIYKTDTTYKKINE" gene 258933..259718 /locus_tag="NT01SARS_0286" CDS 258933..259718 /locus_tag="NT01SARS_0286" /note="identified by match to protein family HMM PF02673" /codon_start=1 /transl_table=11 /product="undecaprenyl-diphosphatase" /protein_id="EJP71808.1" /translation="MSDSLLSILLGIIQGLTEFLPISSSAHLLFPNLIFGTNDLGLSF DIAVHFGTLIAVIFYFKEDISLMLQSLATRNSTFPREKKLFGLLVVATIPIVLVGFGV SDILEQRLFNTFTIALSNIVFAILLLLVFLQRKENLRLVDLTFKAALIIGIFQCFALI PGASRSGTAITGAILIGLTLKDSAKFAFLLSIPTILGALVFLISDINEISLNYSTMII GFFTSMLFAFFTIKYFLAFVDKIGMIPFVVYRLILGVVLLALL" gene 259719..260444 /locus_tag="NT01SARS_0287" CDS 259719..260444 /locus_tag="NT01SARS_0287" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71809.1" /translation="MQIHLDRSLIDKNIKFIAHDLGLNINHQIPSEPYLKYDEKGLSF IKDPNNPREYIHIDYLKGRAGWRLNRSNHESNLKKALGKNQKKLHIFDATGGLLLDTM IFLSLGHKVTAIEQSKILFYLVKDALNRAESKLSFIKNLDFRFGNSIDLYKTIERPID IIYLDPMYPILKKNQKKSLEIETIRFLLKEEKIEGNDQDMIKKFLEYDHKKIILKRPL KSEIYSNINYQVKGKTTRFDIYL" gene 260441..261511 /locus_tag="NT01SARS_0288" CDS 260441..261511 /locus_tag="NT01SARS_0288" /note="identified by match to protein family HMM PF02668" /codon_start=1 /transl_table=11 /product="putative gamma-butyrobetaine dioxygenase" /protein_id="EJP71810.1" /translation="MIKIKDESVILSLDSGQKFDLPFLWLRDNCQCDECRITETEEKQ FLLHKVPVDITPDNVEIIDEKIHISWPDSHQSVIDIDKIINAGNKRYPEHEPWPKNFI PNKYDWREFLEDKKYAADTLKNFVKHGVIILDNAPTEPYSLELLSKRFGPIHETLFER IHNVSVTGHVYNVAHTAKALPPHNDFASYKYQPSVQALHMLVNECEGGESVIVDGWQL VDDLRNDEPEYFDILCNFKIPFREFDENNETYAEAPLIQCDSEGKVESFRFSNQLMQM IDPNKKDLKEFYKAYHEVSKRIYDDKYRSIFRLNSGEVLIVASLRVLHARESFIPSGK RHLQDAYFVYDNAANNIVLLSN" gene 261569..261787 /locus_tag="NT01SARS_0289" CDS 261569..261787 /locus_tag="NT01SARS_0289" /note="identified by match to protein family HMM TIGR03643" /codon_start=1 /transl_table=11 /product="putative RNA methylase" /protein_id="EJP71811.1" /translation="MAWEDRTPFDAIEAQFGISHDDVVNLMRKNLKKSSFKVWRERVR GRKTKHSELRNFKVGRHQSYDQPKYRKR" gene 261759..262061 /locus_tag="NT01SARS_0290" CDS 261759..262061 /locus_tag="NT01SARS_0290" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71812.1" /translation="MTNQNIENDKIKFENLFKSFFADLPNTSICISNNKIVIQEVSDE NSDPASVDLELKNEKYIVYFWDGYSLAETYEAINYDDALSKYKKFAKKLAKNLRKY" gene complement(262109..264022) /locus_tag="NT01SARS_0291" CDS complement(262109..264022) /locus_tag="NT01SARS_0291" /note="identified by match to protein family HMM PF00028" /codon_start=1 /transl_table=11 /product="cadherin" /protein_id="EJP71813.1" /translation="MNTLNRVVLLCSLFIVASCGGGGGGGGGDSDGGGYGMTNGAPSI TNTTTSFSVMENQTSAFTITATDPDNDSLTYTLAGADGAMFNVSTSGVVTFKTAPDYE NPTDADTNNIYAITARVSDGSLSATKDFTVTVTNDTSDDVTTEGMDGTYLGAGPIQSA TVCIEVTAGTCSGASFTTTTAQDGTFSLTVDSGTTGVLRGEGGFDPVTNLQFGDNSGF SLGQPVTDQNFVVTPLSSIMNSYDGSTDYDTFKTKLGLDSDYMIRFNDPFSNLGNTSL NKAAVVNTQIAIMKSIISELGSGSESDVESTIATQIITRTGDETSLGDTTWTKNAITA ISSSSDDFSPSSEQLVSLSAGISAFMQKINANDSSKSHSHFAKAGMTELKDLMKKVME GTADSAEIDKLTFNTITWINENTSWDGGTITDNESELVTTTYKLTHNGSANYNVDNIN AADTELVIYVKEGDVIKFDPTSTVTSNHPFLLSTEVNDMDNSADIGSSQGWNASTLTL TVTADTPETLYPHCQFHSGMYQSGKIVKVSSYDMSKIDVTNATGAMQVKGTVSKGPFK GASGHTYKVYLTSQGGSEHTHEFYEYPGLTFYMPDDQGYHGAESATDDRMFKPKSHYA SSDGGNDDGGSGY" gene 264321..266153 /locus_tag="NT01SARS_0292" CDS 264321..266153 /locus_tag="NT01SARS_0292" /codon_start=1 /transl_table=11 /product="putative outer membrane adhesin protein" /protein_id="EJP71814.1" /translation="MIFLKNNLCHSIILIFIVSCSSGGSVENLTNDNQSISIYVNGLI TPSASYAKQTVEISTDNSMCSFNIALKDNNKKIHHVKSNDNKTFSFRNPIVYRNSENH YLVISTNFSNTCPQVSKEINLEVLKSSTKYDLIPENVDSLKTNIYAINDIGFEGIIIR ERYSATICYPTENDCKFYENELFGQDAHNMVQGDFNGDGHEDFAVAWAFFPHTIEADQ KVYAPLNIYLSDGNGSFEEQMNIYKSGNPPKHPFAYRTIAADFNNDGVDDIFSGSMGI QYRSSDYSQNYIDPYPHLLLISDGQGSLEDKSEQIEDFNDGNGQLCGFAHDASVGDPD GDGDLDIFACNILNINDGNGNFKIHDYINLNWQRENQYGNPMSSILNDLNNDNFDDIV FWNFDNRESWSSADEGYILLSNGTPIIRDWAKITLPAGPYGYNKNKYNHAVSGDLNSD GYQDVVVAITRDQPYYEGAYLQILINDGNGNLIDMTDEKFSEQPRSETHHGEGNLYLR DMNLDGYLDIIHSTRDYSSGYHGAHIAINDGKGSFNSIANSMLPDRPDPGSNNYDYLM KSLPINIDNEGCIDFISVTDVGWENSQNETSNYFFSVINTDCNF" gene complement(266154..266240) /locus_tag="NT01SARS_0293" tRNA complement(266154..266240) /locus_tag="NT01SARS_0293" /product="tRNA-Leu" gene 266288..267307 /gene="queA" /locus_tag="NT01SARS_0294" CDS 266288..267307 /gene="queA" /locus_tag="NT01SARS_0294" /EC_number="5.-.-.-" /note="identified by match to protein family HMM PF02547; match to protein family HMM TIGR00113" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine:tRNA ribosyltransferase-isomerase" /protein_id="EJP71815.1" /translation="MKTSDFDFHLPDELIAKYPLEKRTSSRLLVFSNEIEHKSFKDIV NYFEKGDLLVVNNTAVIPARVFGQKDSGGLVEVMLERIMEDNRALVQIRSSRSPKIGT KLNLENYTVECVDRKENFYVLQFDLAPMEVFNSIGHVPLPPYIKRPDETIDQDRYATV YEDKNLKDSVAAPTAGLHFDNDLLNEIKERGVNIAEVNLRVGSGTFQPVKAENIKDHN IHEEYIEVSKKVLDLVDKTRDNQKKVFAVGTTTTRALETAYLENLKNGYSGYTKLFIY PGYKFKVVDRLITNFHMPQSSLLMLVSAFIGFDNMKHIYKTAIEERYRFLSYGDVMLL NKNEI" gene 267297..268412 /gene="tgt" /locus_tag="NT01SARS_0295" CDS 267297..268412 /gene="tgt" /locus_tag="NT01SARS_0295" /EC_number="2.4.2.29" /note="identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449" /codon_start=1 /transl_table=11 /product="tRNA-guanine transglycosylase" /protein_id="EJP71816.1" /translation="MKFNLLTQSDFARRAELELNRGKIQTPAFMPVGTNGTVKGMTVE DLESTNSEIILGNTFHLMLRPGDEVIRDLGGLHKFSNWNKPILTDSGGFQVWSLGDLV KITEDGVEFSSPYDGKRIFMSPEDSIQIQQNLGSDIVMAFDECTDYPSTHEEAKKSME LSMRWAKRCKDFHKSDSALFGIVQGGMYKDLREISLNKLIEIDFDGIALGGLSVGESK KEKKEILEFMSDKLPKDKPRYLMGVGTPEDIVEAVRYGIDMFDCVLPTRNARNGQLFT SEGVINIRNAEFKNSDEPIDKNCENKVSQKYSRAYLNHLQRTNEMLGSMLATYHNIYY YQSLMQGIRDSIKNNLFAKFVKDFYNKRNLDVPEGPL" gene 268421..268717 /gene="yajC" /locus_tag="NT01SARS_0296" CDS 268421..268717 /gene="yajC" /locus_tag="NT01SARS_0296" /note="identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739" /codon_start=1 /transl_table=11 /product="preprotein translocase, YajC subunit" /protein_id="EJP71817.1" /translation="METAQPSLLSPLLFLGMLMLFMYIFIIRPQSKRNKEINEMLNTL QVGSEVIAASGILGKVKNIKGEYVSIEVSDSVVFKLQKSAIANILPKGTIDSIK" gene 268719..270575 /gene="secD" /locus_tag="NT01SARS_0297" CDS 268719..270575 /gene="secD" /locus_tag="NT01SARS_0297" /note="identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129" /codon_start=1 /transl_table=11 /product="protein-export membrane protein SecD" /protein_id="EJP71818.1" /translation="MNKFSIYQYALILLVLVLGSIYALPNLYPTQPSIQVAYTDSAKS ADQILLNDLEEILEKSEINAEEIFLRENKIVIKFADVDTQLQSKTVLQQALLDRVIIA LNLEPSTPKWLKDLGGNPVKLGLDLSGGVHFLLEVDIDTAQEGRLELLLDTYRRTFKE EKIKYDSSSIRDLSLYFQFSDKSSYNRALKKYRDDSLGISGVQYVITERPSTNTLLLE YSDIALREIRDYAVGQNLTTLRNRVNELGVSEPIVQRQGANRIVVELPGVQDPTAAKK IIGKTANLEFRLEANSRTSPLRKEEFNFKDNDFQTAFLEKAVVVTGDRVTNANTGFDE SGFSQVNITLDMQGGRAMQKATSGNIGRGLGVLFVEQKTKSELVINDDGDSVIEQTTY IEKNIISLATIQAVLGTSFRITGVGTPAEASELALLLRAGALAAPMKFVEERTVGPSL GKENIELGMKSIVIGFSLVVLFMAFYYRVFGIAANISLIINLVLITGIMSLLGATLTL PGIAGIVLTVGMAVDANVLIFSRIREELKEKNPQLAIRDGFSRAFVTIFDANITTLIA ALILYIIGTGPVKGFAITLSIGIVTSMFTAIMCTRAMVNIVYGNKNITELKI" gene 270575..271489 /gene="secF" /locus_tag="NT01SARS_0299" CDS 270575..271489 /gene="secF" /locus_tag="NT01SARS_0299" /note="identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966" /codon_start=1 /transl_table=11 /product="protein-export membrane protein SecF" /protein_id="EJP71819.1" /translation="MDIRFRFMQFRKIASIVSITIFVISVLSLGFRGLSLGLDFSGGT LLEITYEEPVSLESIRSTLEKNGYPDSQVVNFGTNLDVLIKVADQDGNSSVGENIFNV LNSEGFAGEIKRVEFVGPQVGAELRDQGGLGMLVALFMILMYVAFRFQYKFGLGAVAA LLHDVVIILGLFSIFAWDFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRTERVLEPI DMVDLSLNQTLGRTIITSLTTLLVLFALFIFGGELIRGFSLALILGVLIGTYSSIYVV ANMLLSMNLTQEDLAVPEPEGADFDGMP" gene complement(271486..272271) /locus_tag="NT01SARS_0298" CDS complement(271486..272271) /locus_tag="NT01SARS_0298" /note="identified by match to protein family HMM PF00459" /codon_start=1 /transl_table=11 /product="inositol monophosphatase" /protein_id="EJP71820.1" /translation="MSKQALLNVNLIAARKGAAELEFAVKKVHSLDSSKGGPDGYLKA IEKRVEDLVFDEIEKFHKEDNLLSIHRGHEINNSNVTWILKPIDGTENFLNGYPHFSI SLCAKIDDEIVSAVVIDPIRREEFSAYAGGGANLNNNKIRSSKQQSLIDAMLSFKKSK DKNYDFGKSHKELSNQNLNMRESGCISLDLAYVGAGRLDGVWGYDMNILDIAAGALIA QEGGALTSNFLGDPKYINGNNIIVSTAKIYKSLLKSIKPYFKG" gene 272307..273032 /locus_tag="NT01SARS_0300" CDS 272307..273032 /locus_tag="NT01SARS_0300" /note="identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050" /codon_start=1 /transl_table=11 /product="tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ" /protein_id="EJP71821.1" /translation="MTLESNLINIVLVDTIHPGNIGSVARAMKTMGLKRLSLVNPRIF PSDDAVALSGNATDVLKNATVYKSIKEAIKESTFVYATSARDRSIQWPIMNAEEAAND IYKKTSSNKEISIIFGKEDRGLTNDELELANKLIEIPANPEYPVLNIAMSTQIICYEI LKASSNLENKEWRDYPEVNSEQLQMLIDHFIDTAVDIDVIDPDNPKKIISRIKRMFTR LQPDEMEASFMRGFLSAIQKKFK" gene 273081..273158 /locus_tag="NT01SARS_0301" tRNA 273081..273158 /locus_tag="NT01SARS_0301" /product="tRNA-Glu" gene 273299..273766 /locus_tag="NT01SARS_0302" CDS 273299..273766 /locus_tag="NT01SARS_0302" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I" /protein_id="EJP71822.1" /translation="MKKLIMICCVFSAVSCTVNNEDDLNKFEIQKLYRLYVNDFIAND FESIASYFDTPVELKSFNDIAETNEDVIRFFKDFKANIQEGYAYSVIDYISVTNINDD TYLLCADYSRFDNNDKLLFEGRTHYVYINTSDGWKINSLEPKDRSTDVPCVLK" gene complement(273847..274095) /locus_tag="NT01SARS_0303" CDS complement(273847..274095) /locus_tag="NT01SARS_0303" /codon_start=1 /transl_table=11 /product="integral membrane protein TerC" /protein_id="EJP71823.1" /translation="MILNGIVWVIIAAFGLVLIDVTDKWTRKAIQWMDVADKWIRKFV EDSLEWIIEKNLNIFSAFLFVILFGVLSQLGILPKLIS" gene 274243..274488 /locus_tag="NT01SARS_0305" CDS 274243..274488 /locus_tag="NT01SARS_0305" /note="identified by match to protein family HMM PF00076" /codon_start=1 /transl_table=11 /product="31 kDa ribonucleoprotein, ic" /protein_id="EJP71824.1" /translation="MNIYVGNISWGLTDQDLENVFAEHGTVTSAKIITDRATGRSRGF GFVEMSDGAEAAIEALNGTEVDGRELVVNESRPKDKS" gene complement(274485..274880) /locus_tag="NT01SARS_0304" CDS complement(274485..274880) /locus_tag="NT01SARS_0304" /codon_start=1 /transl_table=11 /product="NADH:flavin oxidoreductase/NADH oxidase" /protein_id="EJP71825.1" /translation="MNEAKNLIHKWHEVVGSDDPLLLENIISDDAIFSSPVVFTPMEG KKITMMYLSAAGQSFNMEKFKYTKEIHDGLNSVLEFETYIDDISVNGVDIIEWNEEGK ICNFKVMIRPFKAVQKVQEKMIEALESIT" gene 274997..275305 /locus_tag="NT01SARS_0306" CDS 274997..275305 /locus_tag="NT01SARS_0306" /codon_start=1 /transl_table=11 /product="putative antibiotic biosynthesis monooxygenase domain protein" /protein_id="EJP71826.1" /translation="MEYLVIADFKVNDGMADDMANVFKEALVDTRAFEGCNAIDVYYE EKTNTFTLIEDWASLENYETYLQWRIDTGIADILNPLLVGGWDGVVSSVKRLGIPKGI " gene 275309..275674 /locus_tag="NT01SARS_0307" CDS 275309..275674 /locus_tag="NT01SARS_0307" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71827.1" /translation="MSDKELINNCINTYYEGCIESDPNKIKEAFDENAMISGYLPDGL HEMNLDEFAGFVDAQKPSPKEKGDEEFLEVISCEVVGDTAIVQIREAYLGMIFVDSFS FLKKNDTWRIYTKLFHVET" gene 275703..276593 /locus_tag="NT01SARS_0308" CDS 275703..276593 /locus_tag="NT01SARS_0308" /codon_start=1 /transl_table=11 /product="putative RNA-binding protein" /protein_id="EJP71828.1" /translation="MLLKNKSLLASAVIAIFVASCAKETAVDSSDTSGDSYSEFVDSL ESTGGKAYAEFMACTAGPDFNAENATKMIAAWQKLITAESLFGVWGYVPAADTNAFGD TLWWELNWNSKEEADAEWDSWAQNEDGQAWAEEFSNVMVCDGEGRNSFDGIYPILPNT YGAVNESGYFYAEFYQCNYTEGSNRENAEAFLPGFTDAVRNSNYDGTGYSYANYFAHK NEDGSHVDADVDFLWGNFTKSKESNDKATELFEKDVRDDMFPLFSKFATCAEVPDVYH GWTFYIGDQKDFMPDFTSRD" gene 276657..277742 /gene="ald" /locus_tag="NT01SARS_0309" CDS 276657..277742 /gene="ald" /locus_tag="NT01SARS_0309" /EC_number="1.4.1.1" /note="identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518" /codon_start=1 /transl_table=11 /product="alanine dehydrogenase" /protein_id="EJP71829.1" /translation="MIIGVPSEVKNNENRIGMTPDSVSKLTKKGHEVFVQESAGANIG FFDQDFISAGAKILKTPEDVYKSSEMIVKVKEPIPSEYKFLRDDLTLFTYLHLAGDPQ NAKKLIDTGVTGIAYETVTSDNGSMPLLAPMSTIAGQLAFTVGTYHLLKQNLGKGVMI GNLKDIDPRVVTVIGAGVSGTQSIYKALENHAHVKVVDSSQKKLSELESELGSENIEY ILSTDESVQSSINESDLVIGSVYVVGKEAPKVVKKEMLKSMNPGTVMVDVSIDQGGCF ETSEPTTHDNPTFLKNDIVHYCVTNMPGAVPLTATLALNKATLSYITELADKGIQKAL EENEHLNNGLNISNGNIIHPGVKEALD" gene 277742..279085 /gene="pam" /locus_tag="NT01SARS_0310" CDS 277742..279085 /gene="pam" /locus_tag="NT01SARS_0310" /note="identified by match to protein family HMM PF01425" /codon_start=1 /transl_table=11 /product="peptide amidase" /protein_id="EJP71830.1" /translation="MIDKSYFFLTFIVLSFFIIAEDEKNSLIEVYSKDIEVNSINIVL KDNIDIRNKITSAGSLALKDNIAKKNAFIVDKLINANYFIYGKANLSEWANFRSEDSI SGWSSYGGQTKHYLNNDYNPCGSSSGSAVAVAMGIVEIAIGTETNGSISCPSSINGIV GMKPTTGLVSRSGIIPISSSQDTAGPMGKSVNIVAKTLEVISGVDENDQATLSIPVNF EFDFANAAKNKRLDGVRLGLLNSEYSNSEILDLHNQIKSIVSSLGGIVVDIEDNRIYP GDAEYYILLYEFREGLEDYLKNSNSAMKKLEDIINYNIKNKELIMPYFGQDIFYKSLD SNSYLWYQWSKYKIKNSYQKTIKLMEKYDLDAFIGLTRGTPWKINYEGGDWPAMSDTI MIDSGGYAAHNGMPHITIPYFKINDFPVGISVIGRRWDDKEIIKYAAAIEKTNLN" gene 279118..280125 /locus_tag="NT01SARS_0312" CDS 279118..280125 /locus_tag="NT01SARS_0312" /note="identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="EJP71831.1" /translation="MEKVLVTGATGYIALHCVQQLLDQGYAVNGSIRSPERKNEVIEA LKNSGTSTENLNLYVFDLTNDEGWDDGMEGCDYLLHVASPLALENHTEDYFVKPAVAG AKRALKFAKKHGVKKVVLTSSVAAIFETGEEKVFYDESDWSDPDNPNISNYAKSKTLA EKAAWEFLKEEGNPFDFAVINPALVIGPSLSGDLGVSNSAIEMVVTGKMPLAIPIQFG FVDVRDVATAHILAMQTDASNGERFALAERDLWYKDIAKILKDNGFDKAPKIAVPVWV AKILGNFNKQLKVASPFLGRVRSVVKATKAKDILGWKPRSSEESIIEIANQIKEMGLI K" gene complement(280118..280867) /locus_tag="NT01SARS_0311" CDS complement(280118..280867) /locus_tag="NT01SARS_0311" /note="identified by match to protein family HMM PF02544" /codon_start=1 /transl_table=11 /product="3-oxo-5-alpha-steroid 4-dehydrogenase 1" /protein_id="EJP71832.1" /translation="MNTFYILVSIWVLIGIGTFIYLFYENAPYGRHIKDGWGIKIPAR LGWVVMESPCVILMIIYALLVKDQLENIHKVFLLIWLAHYIHRTFIYPFLIEMTNPEM PISIAASAFFFNLVNVSIQAIGIFYFTEYSEDWISNPIFIFGLLIFLIGMYINIRSDY IILWLKREKGPGYHLPNSFLYKYLSAPNYFGEIIEWIGWAILTASISGVVFLIWVIAN LFPRAIAHHKWYISKFENYPKNRKAIIPGII" gene 280953..282632 /locus_tag="NT01SARS_0313" CDS 280953..282632 /locus_tag="NT01SARS_0313" /note="identified by match to protein family HMM PF00732; match to protein family HMM PF05199" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="EJP71833.1" /translation="MEKFDFVILGAGSAGCVLANRLSKDPNFNVCLIEAGSKDSDPRI HIPIGFAFFGDGSKYSWNYDTVPQKEFEKEVVAQPVQEVVDSAGGTHKVEAETLEHRK GFQPRGKTLGGSSSINAMLYVRGHRWDYDHWSELGNEGWSYDEVLPYFKKAEHNEVFD DDYHGQNGPLNVCKIRNQNTPTDDFVKTGSEIFGYNDDFNGANQEGVGYYQTTQKDGK RCSAAKAYLVPSLDRENLTIMTDTNVNKILFENKKAVGVECLNKNGELITIKASKEVI LSSGAFGSPQILLRSGIGPSEEILKHDIDHVHELPGVGKNLQDHIDYLSVHKYNSVEL IGFSLKSIFYKFPLEILKYVFAKVGMFTSTVAEAGGFIKSSDQKNIPDIQLHFAPAMV IDHGRTSVWGHGLSCHVCLLRPKSRGEVTLNSADPLDDPLIDPKFLSHPDDVSDLVAG YKKMMSILNKDPVSKYTAKHTLRPVNLEDDNDIEQAIREDADTVYHPVGTCKMGSDDM AVVDNKLKVHGIDGLRVVDASIMPTLIGGNTNAPTIMIGEKASDLILQDWA" gene 282633..282965 /locus_tag="NT01SARS_0314" CDS 282633..282965 /locus_tag="NT01SARS_0314" /note="identified by match to protein family HMM PF00581" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="EJP71834.1" /translation="MQRSTLLLFLISFCLILKSEVIIDVRTPEEFQNAHIINSKNIEW QNISDIVGITSKDEKIYLYCRSGNRSGKATKILIDLGYKDVTNLGSIQSASEKLGKEI INFQQNRQ" gene 282962..283885 /locus_tag="NT01SARS_0315" CDS 282962..283885 /locus_tag="NT01SARS_0315" /note="identified by match to protein family HMM PF01734" /codon_start=1 /transl_table=11 /product="putative patatin" /protein_id="EJP71835.1" /translation="MKNFFSFLTRFSNKKIICFDGGGVRTIASIVFLKKLEAESGKKV SDIFDMFIGTSAGAFNAACFAYGGFTADKIKRYWSKHYLDKIMKSSFFWDKASLIQAR PRYENEGRLEMLNEIFGKSTLKESNKPFLCLSYNIESRESVIHDSINTPNVTFLDAVA ASSAAPMYFPTYQMQDKSWMVDGSVVTNNPTLIGYHYAKKILENENIKILSIGSGHNK NKISGENSTKWGGVGWLRNDIIGMLLDSEIHNEISESFFDDNYLRINSPLGKVNKLLD DDSDENLERIHLMGMEWWSEFGEKTLKFIEN" gene 283985..287161 /locus_tag="NT01SARS_0316" CDS 283985..287161 /locus_tag="NT01SARS_0316" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="EJP71836.1" /translation="MNKYLLSLLVLLPLSIFVQAQDSEEEEVEEVVVTGIKSSLKDAI EIKRKNVGVVDALTAEDLGKFPDGNLAEALSRLVGVTTERSNDEGTKVTVRGLGPEFN LVTLNGRTMPTVPPQYGGGRSFNFGDISSHGVAAVEVYKSANAVLPSGGLGSTINMVT AKPLQGDKGGSVSFRLQNHTKNVTGDDLTPELDFIYVTNGEFEGSKWGFAISGSHQER HNREEGTNEITWLPSNERNHIPSSASITSANKRADGVFFYPESLAYKFKDNQSERDNL QTTFQWESGNLVTTLDYTVSSTSFDFTGITVGSYFAGWNTTVASINERGAVISGTSLA TPDGDSWQNDFEYGNSDNNNQSIGLNMDYQVNDNLNIVLDYHDSSAAFKGTPGGTQNN ILQFSNGAWAGWGWWPVQEASGYLRERSFDFGRNKVGALTWNMDKNFQGTPIDVTEFD GSDMGPRQAFLNYQERQSELDQFQLIGTWDNNDQIFMDSLTSIEFGYSEMNTKFTNQK WFNQLINGKIADGNPIMMTYAFMPDDVWTKVSVPGYLGSGTPFYYLNISKEDALYWFG AAGMVGDFSGADGTWWNANNSPYQWPAACIAQDAVDADGNPNGLGGNVGYDGSRTTTR GVVDGCYGDRDSNGIIVEELNSLFVNFNFETETASGMPVRAQLGIRYEEEDRASTATT VVPTNTAWSLGAFMYGNKVGVVTAPVDYTGEGSSDYILPNFNMTIEPAENKVVRFSAS KTIARPSLEQMDSTVSVGVFDPRYPLTIGTGNPNLQPYESTNFDIAYEHYYAEGSYFA VNYFVKQIEDYHGAGLTSGPFNGVRDVTAGPRGALIVPENDDALCQWTASQGYWACGW SNAYDWAWLVNTGFTFGCNGSTDCIPDAGNGNAVFLGNSDDPFYIFNLAQPINRYSGD LDGFEVAIQHLFENNFGVVANATFVGGDTDADRAALGEQFALPGFGDAANLSVFYEDE KVSVRLLYNFKGETYAGMDQYNPLYVVERAQVDFNAYYNLDENTQVFFEAINITDSEV ELYSRYEEMTFLYQDHGPIYKAGFRVKF" gene 287221..288030 /locus_tag="NT01SARS_0317" CDS 287221..288030 /locus_tag="NT01SARS_0317" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="VCBS protein" /protein_id="EJP71837.1" /translation="MKSSKFIALLVLVASCGGGGGGGDASVPFAITLAPNSISVDEDN IFNGSFAARANEPVTLTYSLTSGTSNGQINISSSSGSVTYTPDSNFNGEDSFTYSVTA SEKSVTQTSTVTITVNPINDPPSISIVSNNELDENSILFDQNPSFSVTYSDVDNSDDE LSFSAKVNGQDVPSTFTASGNGSGDITLDLTSLTSAGLFDAEIIVSDGSLTGVDTYTT WHISNKTVVTISQDDDPEDGYDGGAKTQKDYYVYYLIGNPQSTEXXXXXXX" assembly_gap 288008..288027 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 288046..288189 /locus_tag="NT01SARS_0318" CDS 288046..288189 /locus_tag="NT01SARS_0318" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71838.1" /translation="MVLFVCSGLIADLPPITREDLKKITIHFKVKKMPKFLKLKEVGM EFH" gene 288234..288494 /locus_tag="NT01SARS_0319" CDS 288234..288494 /locus_tag="NT01SARS_0319" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71839.1" /translation="MKMLSSKDKYALKVLDKNKKEIFMIGLGNPFYIHAQHIDFEDRD FFGGYVDAELEIAFPFEADVVYFVLYSQEDKFLRKINEIKIK" gene 288570..288645 /locus_tag="NT01SARS_0320" tRNA 288570..288645 /locus_tag="NT01SARS_0320" /product="tRNA-Gly" gene 288668..289618 /locus_tag="NT01SARS_0321" CDS 288668..289618 /locus_tag="NT01SARS_0321" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71840.1" /translation="MLLFFIVSCGGGGSSDSSLENSSSSNPTVTSISENCEITTWNNK LQRCDLMHEGLERYYFIYVPNNLNNEKSIPLLFALHGYGSTARNHFSYTNYIPIADQN NLIVVYPQGAPMSTTLTSSSSHWNVGGWTVGSNVKDVEFIDALLDLINNKINFDQTRI YSSGMSNGGFMSYHLACNLSSRIAAIASVTGSMTPQTYTNCNPTHATPILQIHGLLDT VVPYNGLSYMESIPKIMKYWSEYSSCNSEPDETITENITEGYVINIQEYKNCLNDVNV KLFIHNSMGHTWPRFSNYGISASTEVWNFVSQYNLYGKIN" assembly_gap 289780..289799 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(289990..290136) /locus_tag="NT01SARS_0322" CDS complement(289990..290136) /locus_tag="NT01SARS_0322" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71841.1" /translation="MGFTVIVTVLVWVTLFSDAVTLYVNESSPLKFESGVYVTEPDDD EILI" gene 290369..291874 /locus_tag="NT01SARS_0323" CDS 290369..291874 /locus_tag="NT01SARS_0323" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71842.1" /translation="MFDAEIIVSDGSLTGVDTYTTWHISNKTVVTISQDDDPEDGYDG GAKTQKDYYVYYLIGNPQSTGRTKYLFIGDSLDGNTDISLYRRALIASVNKLNASDAS EFFGEDYFTVVSAEPVDPDGTSPVGVRTGCYDFDEDIYCISELDEAIFDVMLPDNVLV SILTKAVNPDSGLGRGVNQGYKNIQRIRDTDPERTRHTLMHELGHAHGYMGDEYRTDE RDLTDRGYNVNTTTQSDISILKWNHHIPDQLNVLGKDIQVCYNYGDGTIADWDDLGIN IADCDCFINEWRTTTDSNGNNTYTFVRKNPECSGVGLFEGNYYGLYDNYRPTFCSVMD KCTSAGYGPVNVEGFAVGSIQNQGFYDNDDVRLVKDAGQANVGFEIALDVEYDTSKIT LKWFKNGVEDTSKQNQKTVIFDRPADNSVEIYTAKAVDLTGTITASDDVLDNTDFYEG AFQSYFYWCEYDSNNRCSWSYDPDPSTYTQFNYGYMRGPMGVTWGINWEKW" gene 291904..292341 /locus_tag="NT01SARS_0324" CDS 291904..292341 /locus_tag="NT01SARS_0324" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71843.1" /translation="MCIDLIADLPPISKEDFEKDYYSLQDEINAQIYRIEGSRFGISI KDSRVGKPSTVAIKNMKMLSSSDKYALQVLDKSKKEIFMIGLGDPFYIHAQHIDFEDR DFFGGYVDAELEIALPFEADVAYFILFSQEDKFLKKINEIKIK" gene 292380..293468 /locus_tag="NT01SARS_0326" CDS 292380..293468 /locus_tag="NT01SARS_0326" /note="identified by match to protein family HMM PF02230" /codon_start=1 /transl_table=11 /product="phospholipase/carboxylesterase" /protein_id="EJP71844.1" /translation="MKALSLECILTSQCGTSSVGRASACQAEGRRFETGVPHHFQRNI LFLLLFFIVSCGGGGSSDSSPNDSNNSNPIVTSISESCEITSWNNKLRRCDLTHDGLQ RYYFIYVPDNLNTEKSIPLLFALHGYGSTARNHFSYTNYIPIADQNNLIVVYPQGAPM NTAITNSSSHWNVGGWTVGSNVKDIEFIDTVIELVKNKINLDQTRIYSSGMSNGGFMS YHLACNLSNQIAAIASVTGSMTPETFANCNPTHATPILQIHGLLDYTVPYNGLSYMES IPKVMEYWSEYNSCSSEPDETNIENISEGYVINIQEYKNCLNDVNVKLYLHSSMGHTW PRISNYGISASSEVWNFVSQYNLYGKIN" gene 293549..294295 /locus_tag="NT01SARS_0327" CDS 293549..294295 /locus_tag="NT01SARS_0327" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71845.1" /translation="MKYIYSLIFVLSVSINAQDYEPKYEVDANKAEYYVGTFNDNKDV DDLTAWYGKFAKWAESKDGTYDNMTVAILQPYFHSELDEVEVLWVNTWPTPSEQFNGI ETWITGGGAKLLESLPVTNSRQVDTWQWVVSEPASTDAGNMMYATYADCSMAEGYTAR QVYDAYKDFAVYAASQGDTVGRKMIFPDAGMALPDGVDFIRLMYTSSISERGKNADLF YEKLYGSEAYDNLQGFSCTNARSYSGMAMQ" gene 294368..295480 /locus_tag="NT01SARS_0328" CDS 294368..295480 /locus_tag="NT01SARS_0328" /note="identified by match to protein family HMM PF01494" /codon_start=1 /transl_table=11 /product="putative monooxygenase FAD-binding protein" /protein_id="EJP71846.1" /translation="MEIYKNSIAIIGAGISGLALGIILNKQNIKSVIFEKSSSVSEYG AGISISKNGQYVLSELEILDNLKIISGNPQKAVFFSGSKKITSIESNVVTTSRKSLYD LLLNKYIDTGGEVCFDYELINVNNLNKMVFFKNGSSYEVSHIAACDGINSICRLRTLE SSKPQYSGYSVWRSILDQKQQDINFHLGPNFHVVTYPINEKKTSFVAAVKKNKKHKES WYAKGTYDDLKEDIPQEILMKYKDLKVTNEIYKWGVFVRPKINLLFSENITFLGDAAH PIVPFIGQGGCLALEDSFLLGNLFSKYSSIKDIQINYQRLRQKRIQFVAKSSFNQGKL NHLKHPLLIFLRNYLMKNTQIIKYMTNKIWDYRPYL" gene 295537..297741 /gene="glcB" /locus_tag="NT01SARS_0329" CDS 295537..297741 /gene="glcB" /locus_tag="NT01SARS_0329" /EC_number="2.3.3.9" /note="identified by match to protein family HMM PF01274; match to protein family HMM TIGR01345" /codon_start=1 /transl_table=11 /product="malate synthase G" /protein_id="EJP71847.1" /translation="MNFLNKFIKKFQSSEKNLEQSATNNLKISPNLDEFVKKELVPGL NISSDYFWKTFEDIVERFSERNRELLNERENLQSKIDDWHIQNKDFNSEEYKNFLTDI GYIHPRSSDFKIKTWNVDPEIRKIAGPQLVVPVMNARFALNATNARWGSLYDALYGTD IISDSNGAEREGGYNPIRGDKVIAFSKEFLDNTIPLQFGKYENVINFEFVDSEILMTL NDGKKVNLKEKEKYIGYMDKGEGAYGLLFKNNNLHFEIQIDKNHPIGQEDPAGIKDIL MESAITTIQDCEDSVAAVDDEDKIIVYRNWLGLMKGNLKRTFEKSGKSITRELNPDRK YLLKNGRMILLPGRSMLLVRNVGHLMTNPAVRDKNGNEVFEGIMDAVFTICIGIHDLV GNGKYKNSKTKSIYIVKPKMHGPKEVKFTCDLFAAIEDAFNLPMNTVKVGIMDEERRT TVNLKECIEVAKHRVIFINTGFLDRTGDEIHTSMEAGPMVTKTRMKQENWINAYENWN VDIGLETGFKGNAQIGKGMWPMPDEMLEMYKAKSVHPRSGANCAWVPSPTAATIHAIH YHQIYVQSEQDKILNRDKASLNDLLKIPLIKSYEMPSAEEIQEELDNNAQGILGYVVR WVDQGIGCSKVPDLNDIGLMEDRATCRISSQHIANWLHHGLCSEKQVIETMKKMAKVV DLQNKDDVNYKKMSPAYDGIAFKAACDLAIQGRTQPSGYTEPILHEMRLKRK" gene 297743..298030 /locus_tag="NT01SARS_0331" CDS 297743..298030 /locus_tag="NT01SARS_0331" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71848.1" /translation="MKKGYWVVRAKLIDTEEYSKYINLATEIIKKYGGQFIVRGGHQK EFENFGFDRTVVVEFESYDDAVKCYKSSDYQSALDHVKDSAVRYVSIVEGI" gene complement(298027..299169) /locus_tag="NT01SARS_0330" CDS complement(298027..299169) /locus_tag="NT01SARS_0330" /note="identified by match to protein family HMM PF01231" /codon_start=1 /transl_table=11 /product="tryptophan 2,3- dioxygenase" /protein_id="EJP71849.1" /translation="MYRFLGKKEPLKIYKTQSKSLKKISAVASQLPKLLLTNQVQKTI DALDKNDFSVQKIIKLNSKDEINLAMSQISFIAHAYIWGDSKPRQVLPEVISKPWVDL SNYLGRPPILSYASYCLDNWYKINPKKPITLDNVALINNFLGGVDEDWFVTIHVCIED AAGDAIEAAKKLSTMNRNNSLKDFLDELKKIKKSLKNVNTIFSKMPEKCDPYVYYHRV RPYIFGTKDNPDLKKGLIYENQFDNKPQFFRGETGAQSSIIPFLDGALGIYHSNDNLK HYLNEMRDYMPPKHRKMIEDVEKKSQAKNLIHKSKTLTHEYNLCLEEIRKFRAKHLEY AASYIHKQAQMNSDVGTGGSTVRGTGGTPFMKYLKKHRDETHNQKI" gene 299587..300987 /gene="pyk" /locus_tag="NT01SARS_0332" CDS 299587..300987 /gene="pyk" /locus_tag="NT01SARS_0332" /EC_number="2.7.1.40" /note="identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064" /codon_start=1 /transl_table=11 /product="pyruvate kinase" /protein_id="EJP71850.1" /translation="MFTRTKIICTIGPSTDSYSSLENLVLSGMDVARINMSHATHKNA SNIIEFIHKINKKNKTNVSVLLDTQGPEIRTGDTKLPIDLKSGDIVSLTVRDEVDVET SSIKINYKGLIQSVKKGSKISVDNGLINFEVISKDYETLECKVIDGGKIGSKRHVNLP GVRINLPSITTKDIEDIKFGIKSGVDFIALSFVRSADDITELQKLINKNKSSVKIISK IENQEGLDNIEDICKSSWGVMVARGDLGIETSLTNLPNIQRKIMLSCATHGKRSIVAT HLLESMINNPTPTRAEVTDIANAVYEGADAVMLSGETSIGKYPEECIKFMKSIVAETE KFKTLGYENNLQKNSDWEYIGQAAKNLAESIKADGIIAITRTGDTATYIANAKPHGVP IFSFTNNEVTLRQLSLVGSTVSFLIKDISNHDKTIKQCSNILKKYFSKKKKLKFIMVS GIFSEKHSDAIQIINF" gene 301032..303668 /gene="aceE" /locus_tag="NT01SARS_0333" CDS 301032..303668 /gene="aceE" /locus_tag="NT01SARS_0333" /EC_number="1.2.4.1" /note="identified by match to protein family HMM TIGR00759" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase (acetyl-transferring), homodimeric type" /protein_id="EJP71851.1" /translation="MRNKDSDPIETNEWLEAINSVIEEEGVDRASYLLTKIAERLNQE GAIPSYNLTTPFKNTISVKEEAPMPGDLFMERKIRSLIRWNALVMVLRANMNDDELGG HIATFSSAATLYDVGFNYFFRGSNNQLEDMIYYQGHSSPGIYARSFLEGYLNEEDLDN FRREVTKPGLSSYPHPWLMPEYWQFPVVSMGLGPILGIYQAHVMRYLSSRGLVPRNDR KVWVFCGDGEMDEPESKGAIGLAGREKLENLIFVINCNLQRLDGPVRGNGKIIQELEG SFRGEGWNVIKVVWGRFWDPIMAKDSEGKLQDLMDVVVDGELQNFKAKGGAYTRENFF AKDPSVLEMVKDLSDDDIYKLNRGGHDPYKVYAAYHKAVNSEGAPTVILALTTKGYGT GSREADNTTHQVKKLSMDNIKSFRDKFNIPVPDSEIEKLPYVRPPEDSPEIQYLKKTR EALGGFIPRRRTSSDPLSIASDKPFEKLLESSGDRKISTTMAIVRIITDLLKDPEIGK RIVPIVPDEARTFGMEALFRQVGIYSSAGQKYEPEDADKVMWYKESKDGVMLEEGITE AGAFSAWTALATAYSNYDFPMVPFYLFYSMFGFQRVHDLSWAAGDAQAKGFLIGATSG RTTLNGEGLQHQDGHSHILSSTIPNCLSYDPTYAYEVATIVKDGIKKMYIDQENYFYY ITTINENYTHPEMPKDCEEGIIKGMYVLSDNESYDVRLLGSGAILREALKAKDILFKF KIKAQVWSVTSFNLLRKDGMEIERYNQLNPSGKQKLTYVEECFSDSNVPVIAATDYMR SYAEQIRPYIHSSYTTLGTDGYGRSDSRQTLRDFFEVDSKSIARAAIYALYKNDKIDK NQIENYYKELGIDSNKPNPWEI" gene 303668..304957 /gene="aceF" /locus_tag="NT01SARS_0334" CDS 303668..304957 /gene="aceF" /locus_tag="NT01SARS_0334" /note="identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817" /codon_start=1 /transl_table=11 /product="dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex" /protein_id="EJP71852.1" /translation="MSNVKTINLPDYGDFDEVEVIEICVESGQEVDSEEPILILETDK AAMEIPSSVNGIVNKVILNVGDKVKVGMPFLEIEVQENKEVDKTNIDTKEEVSVDEKT FMDDPPSAVDDAANVMSKQESNVINLNNHKSKNIHSGPATRKLAREFGINLSLVAGSG PKGRILKEDLHQYVKNILSSPQEQTFKSTQPDIDFSEWGNTKEVDLTKFQKTSLDNLH SSWVNIPHVTQHEEINISKLMKIREKLCKKYKVKISPLAFILKGLSVSLKEYEMMNSS LSKDLNTIIFKDFINIGVAVDTEYGLIVPNIKNIDSKNISNIASEVKELADLAKKRRL KNEHLQGASFTVSSLSGVGGKFFTPIINPPEVGILGLSRTFDSLKLDKLKLETVKMLP VSLSYDHRVINGVYAIQFINHLSEVLNDIKFLEDSFK" gene 304995..306560 /locus_tag="NT01SARS_0335" CDS 304995..306560 /locus_tag="NT01SARS_0335" /note="identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813" /codon_start=1 /transl_table=11 /product="sodium/glucose cotransporter" /protein_id="EJP71853.1" /translation="MFNTLDWVIVGLYCIGIISLATYVSRNKRGSERSAEDYFLAGRS LPWWAIGASLIAANISAEQIIGMSGQGFIVGMAIAVWELTAAIALIVMAKYFLPLFLE KKIYTMPQFLEQRFDKSVSLVLSFFWLIVYIFINLTSVLWLGSLAINALTGLDLFYGL VVLAIFSLAYSLSGGLKAVAMTDVVQVVLLIFGGLAVSFIALNTISESTGVVNGMKIV FDQMPEKFDMILSSDNPSYKNLPGIWILFGLGVWIGHFFYWGFNQYITQRALGAKSIK EAQKGVMFAAYLKLLMPIVIVLPGICAAILFPVLEKSDQAYPTMMSLLPNGLLGLTFA ALIAAIVSSLASMSNSISTIFTMDIYRYFKGEEHNQASLIKVGRYTVVISLLIATLIA KPLLGSFESIFQYIQNFTGYFSPGIVVIFLVALFWKKATSMSVLIAALISLFASVLIS LIYPDLPFIHRMTIVFVLSAIGCWYTSYLQGYKDQAKAIDLSSINFSTSKSFNFNTCV IVFVLAIIYITLA" gene 306564..308429 /locus_tag="NT01SARS_0336" CDS 306564..308429 /locus_tag="NT01SARS_0336" /note="identified by match to protein family HMM PF00933; match to protein family HMM PF01915" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 3 protein" /protein_id="EJP71854.1" /translation="MKKLFLLIVFCSFLSAEIDWSDSNDCELPNHSNFVNEMISKMSL EQKIGQIIMPEINSITIEQVRKFHLGTILNGGGGFPNKNKNSSIDDWKNLSKEYYDAS TVVDGVKIPILWGTDAVHGHNNVIGATIFPHNIGLGAAKNQKLMKQIGAAVAKEVAST GIIWTFAPTIAVPQNDLWGRTYEGYSEDASLVSELGKNFIIGLQGENEKFLDKYHVLA TAKHFLGDGGTKNGVDQGDTIIDESSLKNIHGKPYYDAIDVCAISVMASFNSWNGIKS HGNKYLLDDILKSQMEFNGFVVGDWNGHGQLPECEDANCPEAFNAGVDVYMVPTEWEA LYWNTYDQVKSGVISEKRLDDAVARILSVKKHLGLFDGRVPHAFNENFIGDSEHRKLA RQAVRESLVMLKNKNSVLPLNPKKRYLIVGPQSKLIENQMGGWTITWQGKTWEGTSIS NQDFPNTQSIFDSISENVLMSGGSVEYSEDGSYDQKPDVVIFIYGETPYAEGEGDITS LDFSPKNKNILKAMKKISKDGIPLISLFISGRPLIVDQELNFSDAFVSLWLPGTAVEG ISDVIFTDNQNNIKYDFSGKLPFSWPSKNSNNPLNIKQKEYYPLYKFGYGLTYQD" gene 308433..309338 /gene="glk" /locus_tag="NT01SARS_0337" CDS 308433..309338 /gene="glk" /locus_tag="NT01SARS_0337" /EC_number="2.7.1.2" /note="identified by match to protein family HMM PF02685" /codon_start=1 /transl_table=11 /product="glucokinase" /protein_id="EJP71855.1" /translation="MDNLLLVDIGGTNMRHAVANASNDNISEIEKSSFDPENFDSFLE KLINKHDSDVLILSVAGPKINNVISMTNQEYTFDPTKIKEKFSIKECFLLNDWEAIAY SYDFIKDSVEYIKKGEPFNQNRLFVGPGTGLGAALSINNQTVLPTEIGNTTNASSLLQ KNFNLNNEDNLNLEKIISGTAIASIYNLKTGNTISSEKIFEKFIKNDADAVFVINGFL KSLAETLSDLSLTYSSGNGILLAGSLIRSLYPYIDKKAFIENFMANKYQSHKKMLELV SIGVITKERTPLYGNLGFYKNLNKS" gene 309375..309569 /locus_tag="NT01SARS_0339" CDS 309375..309569 /locus_tag="NT01SARS_0339" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71856.1" /translation="MADKKQTKVYLIPEDETRDSHTYHYTAIKTRKFTLENKKMRLKK FNPVKRVHEWFVEAKLPPHN" gene complement(309566..310675) /locus_tag="NT01SARS_0338" CDS complement(309566..310675) /locus_tag="NT01SARS_0338" /codon_start=1 /transl_table=11 /product="nucleotidyltransferase" /protein_id="EJP71857.1" /translation="MKNYSEIVKSIHNSKYKITFVSSGGGTNAISSLLEVPGASNTIL ESYIPYSKESMDKFLNKTPDHYCSLDTCLSMAANAYKKSLEISDKTKSKYLLGLAITA NLATTYEKKGDHKFFIVIQADDYTEYLECYLEKGKRSRNEEEELITECAISLLSKSCG LEYPLPEPGEEIKVKKVTAEKPWKKLFNNKVGYISNNKNNPELIFPGSFNPLHEGHLK MRELAEKKTGMHTTFEICAKNADKPPLTYVEIKRTIDQFQNDESWMLTSAGRFSEKAE MFPNSVFIIGADTLMRVFDEKFYKNHKDMMEHIQRFNDHNINFLVFGRKVGKKFISLN KINVPKIIEDRCTGFEEDSFRDDISSTELRLTQNN" gene 310740..311600 /locus_tag="NT01SARS_0341" CDS 310740..311600 /locus_tag="NT01SARS_0341" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71858.1" /translation="MKYSKLLKIFLIFFLANNSFSSDYSVVRYSAWEKADVDLLYVLP AEVNTETKVLFIIHGASRDADRYLSMWLDAAKDKNVILVAPHFKKNDHPYFATLGMAS YSGKIIKDQGVWLNDSIAKFYAYFQNKYNLSSEQYLIYGFSGGSQFVHRYLMYGVDKA IEKAAIGSAGWYTFIESSPFPYGIKDMPLEPGRIEWLMSKEVLFLLGDKDNNPNHSTL NRTKGSMLQGSNRYDRGINYFDHLIRIGNEFNTPLRWRFSVMRGIDHNTKKMTQPAIK FLLKDLDYKD" gene complement(311597..313114) /locus_tag="NT01SARS_0340" CDS complement(311597..313114) /locus_tag="NT01SARS_0340" /note="identified by match to protein family HMM PF04244" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photo-lyase family protein" /protein_id="EJP71859.1" /translation="MAFQRFFMKTLKIILPDQLSENNPIYSDLNNDDYLMFYEPLDTF FEINHHKQKIVFLISSFRKIINNNSHKNIIHRKITKNSKENLNSFLNKINQEHKFQKI VISKPSDFDVYKNLMFFCQSNDIVLEVLDDVKFISETDDFTDWASDKKTRIQEYYYRW LRKKYNIFMNEDSKPVGDKWNFDKDNRKGISHLKDEIPKRKTIKADKVTFDAMVDVEE CFPNATGSLENFNWATTHEEAENLLDDFIERFLVNYGAFQDAINKENTFMFHSLLSPY LNCGLLDPKICIQKAEKKYYESNGEIPINSVEGFIRQILGWREFIKGVYWENMPKYKN LNYWSHSLKLNDNWYEGDTGIPPLDDAIKESKKFAYSHHINRLMIIANLMNLTGIHPN EMYRWFMEMYIDAYDWVMVPNVYGMGSYADGGIFSTKPYICGSSYMLRMSNYSKGDWC DTVDGLYWRFVEKNIKFFESNPRLAVMTRSLTNMNKERKKTIFKSAEEFIDRNTA" gene 313389..314123 /locus_tag="NT01SARS_0342" CDS 313389..314123 /locus_tag="NT01SARS_0342" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="EJP71860.1" /translation="MSFPKTISLISLILISCSSENTKQIEANLLIEPNYEFSAEFFEC KLNDGYTLLNLESFLSTLVRSDLEQNNLKYDVNVYFPKPNYVNQFIINVKNYADQDIY NYILDRLSRRGFDEIAGCKFDKENFYGQSLLVNKIDINNPDYVSEILRCEYNEGYNYG TFRIAIERLALEIKSLNISYEALYLHKKGNPNSFIWINNIYKENFSSEISSNWIKNPI AENIKKEFIENAKCIDARAYDAFLIT" gene 314180..314257 /locus_tag="NT01SARS_0344" tRNA 314180..314257 /locus_tag="NT01SARS_0344" /product="tRNA-Gly" gene complement(314257..315003) /locus_tag="NT01SARS_0343" CDS complement(314257..315003) /locus_tag="NT01SARS_0343" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71861.1" /translation="MKKFTLLLTSIFLISACSQSDNQNQAETSDAPPSLVEYVWHKAG SEFSAENLAMLIRSWNGMIDDAMCNGMMGANILTPEVANEGYDFIWVLLWDSQSSRDA CWDDWTTNLQSNWDTMIDGIMQYDLDNVYLFGWTIGQYPKVENDTGSFVNSFNFCNYN EGYSVADLVTFKNDIASTNWSDSYWYGLLDPKFEPADPAPDFVWLNLWANSAEKEIAQ NKYNNSDLPSTTGAAFTCNNVDFSGVAIRR" assembly_gap 315085..315104 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 315299..315778 /locus_tag="NT01SARS_0345" CDS 315299..315778 /locus_tag="NT01SARS_0345" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71862.1" /translation="MNQFIINIKNYSDQDIYNYILDRLSRRGFDEIAGCKFDKEDLYG QSLLVNKIDINNSDYVSEILRCEYNEGYNYGTFRIAIERFALEIKSLNISYEALYLHK KDNPNSFIWINNIYKENFSSEISSNWIKNPIAENIKKEFIENAKCIDARAYDAFLIT" gene 315836..315911 /locus_tag="NT01SARS_0346" tRNA 315836..315911 /locus_tag="NT01SARS_0346" /product="tRNA-Gly" gene complement(315912..316658) /locus_tag="NT01SARS_0347" CDS complement(315912..316658) /locus_tag="NT01SARS_0347" /codon_start=1 /transl_table=11 /product="putative transport system extracellular binding lipoprotein" /protein_id="EJP71863.1" /translation="MKKFTLLLTSIFLISACSQSDNQNQAETSDAPPSLVEYVWHKAG SEFSAENLAMLIRSWNGMIDDAMCNGMMGANILTPEVANEGYDFIWVLLWDSQSSRDA CWDDWTTNLQSNWDTMIDGIMQYDLDNVYLFGWTIGQYPKVENDTGSFVNSFNFCNYN EGYSEADLDTFRDDIAATNWSDSYWYGLLDPKFEPADPAPDFVWLDLWANSAEKEIAQ NKYNNSDLPSTTGAAFTCNNVDFSGVAIRR" gene complement(316800..317609) /locus_tag="NT01SARS_0348" CDS complement(316800..317609) /locus_tag="NT01SARS_0348" /note="identified by match to protein family HMM PF01478; match to protein family HMM PF06750" /codon_start=1 /transl_table=11 /product="type IV pili leader peptidase and methylase" /protein_id="EJP71864.1" /translation="MEFSSLELCIFVMLFLSIGSFVSTLIYRFSPKNNLSLYKLFIER SNCDQCKSQINSYHLIPIFGYIFQAGKCKKCNHKISIFYPITEIFFCLLGIGIIYTYG LSIFSAYLIMLSIGFYTLFFLDFKYLYLPLSINLSIFLIGFSGNVFFSFSLDETITFF NLSPITFSLSGFLIGYSFLFITNFLYKKISTENGIGGGDFILFGGIGSIFGPFSLGPI LFISSLTGIIFHIAKKGKNSTEIPFGSFLILGSVIYFFIKRYELFKNYLVI" gene complement(317735..319336) /gene="ggt" /locus_tag="NT01SARS_0349" CDS complement(317735..319336) /gene="ggt" /locus_tag="NT01SARS_0349" /EC_number="2.3.2.2" /note="identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066" /codon_start=1 /transl_table=11 /product="gamma-glutamyltransferase" /protein_id="EJP71865.1" /translation="MVTTQHFIATKVGEKILSKGGNAYDASIAIAFTLAVVLPRAGNI GGGGFMVMYDNETMQPYSIDYREKAPEKSHRDMYLNEDGSFNTQRLSTFGYLSSGVPG TVAGLWEVHKKFGSLPWSSLLEDAIYYAENGFEITPYMNDVLVRYNQKLSFYAETKEI FQKDYPDFANKKLIQKDLAKTLEIIAQNGRDGFYKGEIAKKISAAMKKNGGLISINDL KNYEPVWRKPLVSNYKGNEIITMGPPSSGGVHIIQMLKILENYDLNSLGHNSGPYMNL LAEVMKYAYADRSKYLGDPDFYEVPINKLTSKMYTKDISKNIKIGSRKSSAEISPGKY FDQESHETTHFSVADKKGNVVSSTYTLNSTFGSGVVIKGTGILMNNEMDDFSSAPGIP NQFGLLGAKANEIAPFKRPLSSMTPTIVMKNNKLFFTTGSPGGARIISAVLQSILNVI DFDMNLEEATYAKRIHHQWQPERLEIEFSITNDQKNYLQDVGYNTKVSNPLTCIQTIM FKDGIFTGYGDFRRPDAFASGNIND" gene complement(319467..321086) /locus_tag="NT01SARS_0350" CDS complement(319467..321086) /locus_tag="NT01SARS_0350" /note="identified by match to protein family HMM PF00501" /codon_start=1 /transl_table=11 /product="long-chain-fatty-acid--CoA ligase" /protein_id="EJP71866.1" /translation="MNLDFASVWEMISDIVPENNALICGDEIVSWKDYDDRSSKIASA LSNAGLKANSKAGLYLNNSNEYLIGQNAIFKIGGVPINVNYRYVAEELIYLLDNSDSE AVFYHACYSSRIKEIADSLPNIKAWIEVADGTESHFPDALKYEDLLENSSPMERIHRD PETVYMLYTGGTTGMPKGVMYKQGEFLVFLFRTLKAMGYDVPEDINNLEEQIHDFKKN DTFIKSLIGCPLMHGTGMWLGAFLPLLLGGTAITSRNLGFDADQLWTQVENTQTSNIV IVGDAFAKPMLDALDRAVDQGKPYDLSTVKIIISSGVMWSEEVKNGLLKHHDMQLMDT MGSTEGGMGSSVSTRDNPPKTAKFSLNPGVIVIADDGEILQPGSEKIGLIGTSGLVPV GYYKDEKKSAETFKEVNGVRYSFPGDYAKLEDDGTITLLGRGSNCINSAGEKIYPEEV EEAIKRNEEVFDCLVVGVDDPKFGQKVIAVVSLETNKDISEDELVNSTRNYIAGYKLP KKVIFVDEVQRAPNGKANYKWAKNVANEATA" gene 321192..322871 /locus_tag="NT01SARS_0351" CDS 321192..322871 /locus_tag="NT01SARS_0351" /note="identified by match to protein family HMM PF00501" /codon_start=1 /transl_table=11 /product="AMP-dependent ligase" /protein_id="EJP71867.1" /translation="MNDSNKLFNEITNELTQKGQIFETREYKNNFGIITNEYASFPDS LRKYFDFALMHGDKEFLVFEEERFTFAEAFKIAAKFGNALINAGIKKGDKVSICMQNN PEFMFAYMGIVGIGAVCVPLNSWWVPNEVIYGIEHSQSKLLLADQKRLQGLESINITK IISSYTPDETFTDFKEFIKNESDEWPEVEISRDDDATIYYTSGSTGRPKGVLSTQRGL ISSMFSWAFMASVLSEREKRLGKDSTSLASGDSSILLCVPLFHATGSHVAFLLSILVG RKVVMMKKWDTGEALKLIDNEKITDITGVPTQTWELLNHPDRDSYDLSSLRTLGGGGG PRPAEHVKALDKNFKGRPGIGYGLTETNALGTMGAGDEYINNPSSAGRVVPPLTEIKI IDENWQELPEGKIGEVAIRSQSNMKGYWRNDDATAECINSEGWFKSGDLGKFDGPFLY ILDRLKDMVIRGGENIACPEVEGAIYEHPDVLEASVFGIPDERLGEILCSSICLREGS KLSVESLNEFLSDKLAAFKIPVKIKFTYNPLPKIASGKFDKPTMRQNFIEE" gene 322940..323626 /locus_tag="NT01SARS_0352" CDS 322940..323626 /locus_tag="NT01SARS_0352" /note="identified by match to protein family HMM PF00072; match to protein family HMM PF00486" /codon_start=1 /transl_table=11 /product="transcriptional regulatory protein SrrA" /protein_id="EJP71868.1" /translation="MNILVIEDEPDIRKNLEYNLSREGFTVTCSSSLSQAESILNSNT FSLILLDLMLPDGSGLDLCKKIKSDPKTETIPIIILTAKDDEVDKVVGFELGADDYVT KPFSVRELILRVKAILKRGSEKKEILEVVRQFGDLRIDIDSHEVHVDNVGINLTALEF KLLRQLVDTRGRVQSRDQLLSEVWGYSSEVTTRTVDTHIKRLREKLGPMGKYVQTIRG VGYKFARSLD" gene 323672..324976 /locus_tag="NT01SARS_0353" CDS 323672..324976 /locus_tag="NT01SARS_0353" /note="identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518" /codon_start=1 /transl_table=11 /product="putative multi-sensor signal transduction histidine kinase" /protein_id="EJP71869.1" /translation="MGIGVLFSNIISVNSDIPLLLVAFSLFIIATISSIVFANFSYKS ISNLEALAAKIADGSAKKRYIKALKEDSGEFGDVALSISKISENLKDNINLIAKQRDQ FGSVLDDLGEGIVVTDNKGNITFENDQFKQILNLKNVSGKNIKDLDIKQLGYLFRRSK KRKNADIEFEIELSDKSNKWVLATINQSKTTKEYIVVVHDITQLRSLDSMRRDFISNL SHELRTPVSVIRANSETLIDSALDDKEQAKIFANAILHNAERLTDMVSSLLDLSRIEY GELKLNFEELDLDTFFKTYVQSLQTLSKKKNIDIIYKANHKGKILADSQAFERIMNNL IDNAIKYSENNSKIIIATSNEVDEYIKVIVEDNGSGISPEDKDHIFSRFFRTASARAT DNQGSGLGLAIVKHLVNSLNGEVGVQNSESKGSIFWFTVPLA" gene 325039..325434 /locus_tag="NT01SARS_0354" CDS 325039..325434 /locus_tag="NT01SARS_0354" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71870.1" /translation="MNLINIKKIIFAVIVCVAILMTAYTVLQIFNKPNIKEINIPNIK DIEFTSSIDTSSNIDVSSNDINFDYQLIGYRSGETDFSVILKKGNKEFVVSSGDKLEG LYELVAVNEDEVIFSNKGKLYKIKNSVGK" gene 325439..327286 /gene="gspD" /locus_tag="NT01SARS_0355" CDS 325439..327286 /gene="gspD" /locus_tag="NT01SARS_0355" /note="identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517" /codon_start=1 /transl_table=11 /product="general secretion pathway protein D" /protein_id="EJP71871.1" /translation="MKLFKKKLAFFAISAFFIAASAQETFILNYEDVDIKKVTQDIAQ FSKKTIILDPRVKGKITIYSNANLDRDQVWNVYLRTIQVNGFSTIEEDGFLRVVPENE ATRDDSFGYGSGNFETAIIPLKNRPIEEILPMIKPITGRQAHLSSIPSVNSVLLVDRS SNVDRIKNLLQDLDKNNTAKITIIRLDNLSSIEAVRILEKLKSQNNPTINQFIAIPFT PSNSVILSANDLITQNIISTLDTLDKDITDNDSTDVIYLKYAKAADIAPILTSIAGTF VSDIEGSKTVITHHEKTNSLIISSAEENVNSIRNIIAKLDIRRAQVLVEAIVVDLSEN AAKSLGVEAIFTGDDEESIPIGITRFSGSGPDLLGIAGAADDATDVTLTTTAVSSLLN TQGLVAGFGDLTKGDDNFIGILNAIASDTDSNILSTPSILAMDNEPARLFIGQEIPIT TGESLGTNNSNPFRTTSRQEVGIELEITPQIDEGSSVILNIKQGVSGVAGVAQSGLDL ITNKREIETTVLVDNNQIIVLGGLIDEDIQEVISKVPVLGSIPLLGRLFQSSSNTTSK KNLMVFLKPTILTDSDSSEEVSLEKYNYLKAQKELNGKLDIIDLTESKD" gene 327322..328785 /locus_tag="NT01SARS_0356" CDS 327322..328785 /locus_tag="NT01SARS_0356" /note="identified by match to protein family HMM PF00437" /codon_start=1 /transl_table=11 /product="general secretion pathway protein E" /protein_id="EJP71872.1" /translation="MLPYDFVRSNEVIVAQEEDKYLIISTNNLSKQTYHELQRHLRAS FEFKICDSATFNEILTTSFSNTNHNNDISEELSDEFDIQDFAGSINATEDLLSGNNDT PIIKLINGIISQAIKNRASDIHFEPYEDHIVVRYRIDGILKEILKQDSKIASVLISRI KIISGLDISERRLPQDGRVSLSLGDKNIDVRVSTLPSSYGERIVLRILDKQSAQINID DLGLPTPILSNYKSSLRDPEGIILFTGPTGSGKTTTMYAGLRYLSDSSQNILTVEDPI EYTLSGIGQTQVNTKTGYTFAKGLRAILRQDPDVVMVGEMRDVETAQIGIQASLTGHL VLSTVHTNSAVAALTRLRDMGIESFLLASSVRTIISQRLVRRLCKNCRVSSQPSNEAV EIFKLKKNETVYSAEGCENCSNTGYQGRIAIAECIQIDKNLKDLIHNNASENEIADYV FKENKSIDEASVDLIKDGVTSCEEIMRVNNIKEDASL" gene 328772..329962 /locus_tag="NT01SARS_0357" CDS 328772..329962 /locus_tag="NT01SARS_0357" /note="identified by match to protein family HMM PF00482" /codon_start=1 /transl_table=11 /product="general secretion pathway protein F" /protein_id="EJP71873.1" /translation="MPAYSYVALSNNGSKKKGIISAESEREARRLVKDLKLTPLKVIE SKDLGKTLRIKNKDVVLMTRQLATLLEASTPLVESIEITANQTKNQNLVYVLYGLKEE IIQGRRLGIAMKKFPGVFSDTYISMVSAGDSSGNLDTVFTKLANYLEEGAAIRQKVIS ALTYPIILIGFSIIVIVSLLAFVLPNVVNQFIKAGADLPLITKILLGISNNIGIILIV SFIVCAGLYFLYLNIVKDLNKKISFDKKILSIPLIGNFILNSELERFSSTMELLISSG ANLDIALDECSKIFNNKYLSSIVLKAKNDVVEGKDFIKSLQQESIFPDIFTQLISSGY KSGNLAGMFNKVSQFMKAEIETKRSVFLSLLEPIVIILMGGFIMLIVLAILIPIMQMN TLAI" gene 329959..330390 /gene="gspG" /locus_tag="NT01SARS_0358" CDS 329959..330390 /gene="gspG" /locus_tag="NT01SARS_0358" /note="identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532" /codon_start=1 /transl_table=11 /product="general secretion pathway protein G" /protein_id="EJP71874.1" /translation="MKNNRKGFTLVELMAVLVILGILATVVVVSVDPVFQRANLEKIR ADMANTGKALELYKFNELTYPSTSQGLDALVMPHSELKNPFLYPEGGYISSIPKDPWG KEYIYEYPPRRSAKYDLYTLGADGIEGGSGEDSDIGNWMQN" gene 330368..330874 /locus_tag="NT01SARS_0359" CDS 330368..330874 /locus_tag="NT01SARS_0359" /note="identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532" /codon_start=1 /transl_table=11 /product="prepilin-type N- cleavage/methylation domain protein" /protein_id="EJP71875.1" /translation="METGCKTKIFSRGFTLIEVLVVILIIGITTTLITLNFSSLNSIE KQSNSIDKRFTYLTEESIITGRVIGWYATNSSHYASYLSNNDPSDENELFLETSWDAN SSLKKIFKYSDGSYIELGNDKSKKPILIFYPSGENSGGTLELHHSDFIQKITIKNNAE IQNEITQY" gene 330855..331229 /gene="gspI" /locus_tag="NT01SARS_0360" CDS 330855..331229 /gene="gspI" /locus_tag="NT01SARS_0360" /note="identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532" /codon_start=1 /transl_table=11 /product="general secretion pathway protein I" /protein_id="EJP71876.1" /translation="MKSRNINEKGFSLIEVVVALFILSISVITIYNLIISTSVSTFQL EQKYLAKEVASNRIALIHTIEKPLKPINRNGEMIMGGQKWLWEEEINKNMSNEFFDFT ISVRLENKDEYTYTTKGFIFDE" gene 331186..331815 /locus_tag="NT01SARS_0361" CDS 331186..331815 /locus_tag="NT01SARS_0361" /note="identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532" /codon_start=1 /transl_table=11 /product="prepilin-type N- cleavage/methylation domain protein" /protein_id="EJP71877.1" /translation="MSTHIQQKVSYLMNKGFTLIEILISLVILSMIAVISSNILQSSL ELERTSTSRLADVRNLNFSSVVIRRDIRQIVNTNLRDGFGNSIDGTFSGNNITKKFFF NTKVNSISNEVSPIKRVEYELIDDKFIRKQFFSSNPYNLDEYISSNVIEGVSEIEILF LNENQWYSSWPIDQNTSNKIPKLIKLEFTQNNKKYLWIIEPNIDYEVQK" gene 331799..332767 /gene="gspK" /locus_tag="NT01SARS_0362" CDS 331799..332767 /gene="gspK" /locus_tag="NT01SARS_0362" /note="identified by match to protein family HMM PF03934" /codon_start=1 /transl_table=11 /product="general secretion pathway protein K" /protein_id="EJP71878.1" /translation="MKFRNKGVVLISILLIVLLLSAVAITFGNKYLVSLKRAQYIEFQ SLSLNAFRNVEAMSLNKIDKFSRFNSSNLTKENPLLTDEIYFEINGATIVGSIDDASN CFNINSLVTAGKEDYQENKKSMNAFRELMYLAEVDNNVAEEIIDQIIDWVDKNSNPRA YGLEDYYYSGPLHNPREFSGGRLLIDIEELKSIPSVRLVDWDIFKEFFCAYPFATDLK LNINTLDKNNILLLTAFFPKIDIKDSEYIIENIPLNGFQDINAFLQSFDDIDLSSPNG EILFTSDIFNIETVIDYEGYSASSKSTLIYGKNKNGYILSRTYNGI" gene 332767..333921 /locus_tag="NT01SARS_0363" CDS 332767..333921 /locus_tag="NT01SARS_0363" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71879.1" /translation="MKTYILFPENLEVEKHSLLSSDDNFIKATNGISLDKLDFIESKD KLIYLLPSTLVSSHTFVQNDKLSHSNNLANFISEVDTDLANDVSENSFFIFDKNGFVI NKNMLDEINSHLSKLKCKSIVIPDYFINQTSDLDTITQLNDKFIFAYKDGTGSSIEPN QIEYYLTVIRNVIPDFNPTVYGPSEDIKKLFRESEFHSEINYKNFVEKNFDKLPNFFK FKPSLKNISAKLDITKNEIFAFVASCIIIFSTPLVLINNNNKTAKDYEDATFSIFKKI DNNIKRVVAPRNQIDEILKQLPNVNTEVNSRTLPVKNLDFLVSMGDKYLESVNLDIDQ NEADILFSNMPEAQFKIIKGLSENFDIAILNEDVVMLDNKVSGEIKLGFK" gene 333921..334361 /locus_tag="NT01SARS_0364" CDS 333921..334361 /locus_tag="NT01SARS_0364" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71880.1" /translation="MEYFNNLNSREKKLLLLALVALSIGLIFLLINNTFNSYAQSKKK ADKARSDYEYVISKAELLSSSLLGQSSNPVSIENFIRSNISVQSNNLKVSNQDGLIKI SFSSDSLKDSINITNEISSKLGKNLINISFKKTQDGQVTEILIN" gene complement(334429..335292) /locus_tag="NT01SARS_0365" CDS complement(334429..335292) /locus_tag="NT01SARS_0365" /note="identified by match to protein family HMM PF02541" /codon_start=1 /transl_table=11 /product="putative exopolyphosphatase" /protein_id="EJP71881.1" /translation="MKIASIDIGTNAIKSKIFETTPASIKYIDGIRSPIRLGKEVFED GKLSDKKLKQLTKTLQKYQKKFKKDKIDQYEIVATSAFRNTSNSEEARRYVENKIEHP IRIISGLEEAKLISFHPKAQKGKNKMYVDVGGGSTEIYIYRKNNHYIQSFQLGAVRLM LNKDEKKEWSRMDRWLTKHSQVDEIIGLGGNIKAFLNAYKVKKMKSENFLKKYKELKN LEINKKIQQFGFASDRADVIDHALEIYVRIIKKLDIKTIQSTKWGVSDSIAVKTFHEL YSKKMSIYEDK" gene complement(335289..336128) /gene="ppk" /locus_tag="NT01SARS_0366" CDS complement(335289..336128) /gene="ppk" /locus_tag="NT01SARS_0366" /EC_number="2.7.4.1" /note="identified by match to protein family HMM PF03976; match to protein family HMM TIGR03707" /codon_start=1 /transl_table=11 /product="polyphosphate kinase 2" /protein_id="EJP71882.1" /translation="MSLVLLDQSEYKRLDAKAYDREKRKLRIELLKLQEDVIKNNRKI CIVFEGRDTAGKSTAIKFFSEYLRPQHFNYVQLGIPTKWESSHWFQRWSKALPKEGEI SFLDRSWYTRAITEPIMGYCNEKQYRYFMKKVNKWEENLIKDGVELTKFYFSLSQDQQ QIRMKARKNSELKYWKLSKNDEKIITKWNAFTLYKEQMFNKTATEISPWVSINSNNKM IARLTSLRYLLNKTDYEDKKIIKPAKWSKSLNNYSTNLEGIRFENLSYDQFMVISKYS DDS" gene 336267..337514 /locus_tag="NT01SARS_0367" CDS 336267..337514 /locus_tag="NT01SARS_0367" /note="identified by match to protein family HMM PF01384" /codon_start=1 /transl_table=11 /product="inorganic phosphate transporter 2-1, ic" /protein_id="EJP71883.1" /translation="MENLFLDPTIILLIAAFAGFFMAFGIGANDVANAMGTSVGSKAI TFKQAIFIAAIFEFLGAYLAGGEVTSTIRKGIVSPDLYVGNENIFIIGMMSALFAAAT WLLIASSRGWPVSTTHSIVGSIVGFVIVSMGFAAVSWGKVGTIAASWVVSPAVSGTMA FLIFLSAKKLILDRRDPEQAAVSLIPFYGFFVAVIIGLVTARKGLKHVGLPLTDNEVL LVTIGFGVVVTIVTAILLNLNKDKIKEYGVESAFAVLMIVTASAMAFAHGSNDVANAI GPMSAIISVASEGAIGAKAAVSPWVLLIGGIGIVFGLAMLGGRVIKTVGSKITHLTPS LGFSAEMAAASTVVAATYIGFPISTTHTLVGAVIGVGLAKGVSHLDLGSIGRIVLSWV VTIPAGASLTILFYFILKTVFGV" gene 337521..338441 /locus_tag="NT01SARS_0368" CDS 337521..338441 /locus_tag="NT01SARS_0368" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71884.1" /translation="MKKFKYLSTALAILFFSSDVLSDITFYGKINTSYESTDKNSKTD TDFKNNASRLGIKGKFDLNENLKISYQFENEIDPTDGRGRADGEQVFKERNTFIAIEG NFGKIFTGTHDTALKIAQLKVDLFNDTRADIKYLFQGENRMNSFVGYTSPEIVKGLKV TINSISQSTGSFDSYSLNYSRGSMKLAFASDSNGKGYDNQRIASTFPIDSLGVDVGVL YQSTKKLSTGVTEKGHLISLKRKVSDKGSVYLQAASSDIKLESGKQNSLGYTYKISKV AKVFVHYSDLENDNKSKNAEYVSVGFEYKF" gene 338523..339119 /locus_tag="NT01SARS_0369" CDS 338523..339119 /locus_tag="NT01SARS_0369" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71885.1" /translation="MDHIAKQDRSRKRIEIILETAEKILLEDGIDQITIANISNRSGL KRTSTYKFFQTPEAIKSMLISNYLNMCALDFEEKTSNINTSEPSVVVMRSVEILFNFY SEHESAQKLLLSSSAILPVEKEPFHNLSNKIQSFVEMNISLPDIFNKDGVFRVITQII LSIFALNTKESGSLNEVGKIEAHRAAHAYLLNWLKQSS" gene 339169..340179 /locus_tag="NT01SARS_0371" CDS 339169..340179 /locus_tag="NT01SARS_0371" /codon_start=1 /transl_table=11 /product="3-phytase" /protein_id="EJP71886.1" /translation="MLSSISLNAENTIYAKFETPQVTITGNADDPAIWVNEVESNLSI IFGTDKYNGVYSYNLKGEIIGFASAGRINNLDIRTLNDTNYFFGTNTGSNTIDLWIYK NYILTNAAKAKKFALSDKSAHSEKTNFLAYGICAGITAKNEIIAFVTEAKGPRIQLWK FDNDNLNLLATFNNDNASESEGCVFDDENMTLFVSEENARGIIRSYKLTNEFELKDMF KIDDRQRNIVGDPEGLALYKTSKNDGYLVASSQGNNTFNIYQRNYPYDFISSFVVGDS DLIDGVSDTDGIEIKNNYFNEDFPNGIIVVQDGKNTGNVIKSKENFKYISLDQLQHIL DL" gene complement(340174..341283) /locus_tag="NT01SARS_0370" CDS complement(340174..341283) /locus_tag="NT01SARS_0370" /note="identified by match to protein family HMM PF00561; match to protein family HMM PF06441" /codon_start=1 /transl_table=11 /product="epoxide hydrolase 1" /protein_id="EJP71887.1" /translation="MINEFNINVSQEDIDLLKQKIKLTRWPDEINNNWSHGTDMSYLK NFSDKWLNEFDWRTHEEKINNIGSYSFKSSSGLKIHFLHSKSNSKDALPIVMTHGWPG SVQEFIKIIPMLHANAAKPVDIICPALPGFGFSDKPSKPGMNSKEMAKIQHELVMALG YKKYIVQGGDWGATISKWMAELFPDNCIGLHSNMVLAWPPADKDPMEGVSSEEERLLS NYDKYKQEGFGYYEIQKTKPQTVGYALNDSPIGLAAWIVEKFYGWFDGEENKLVVSDE EVQAIISLYWFSESITSSARIYKENGDLGFSFEKISQPMAGAVFKRDLIAPPRAWAEE IYNVVQWNIYDGGHFAALEKPETLSKDILNFIENL" gene 341358..341861 /locus_tag="NT01SARS_0372" CDS 341358..341861 /locus_tag="NT01SARS_0372" /note="identified by match to protein family HMM PF09335" /codon_start=1 /transl_table=11 /product="putative inner membrane protein YabI" /protein_id="EJP71888.1" /translation="MFENIETFLTNNSQYAWIAVFLFAFLESFVLSGIVVSSAILFSV CIFVYNMELMPLYLIVPVACLGAHIGDMSGFFFGKTVGPSLLSSKFMIKREKLIKRAQ KFLDKTGSYTVLLGRFVPAIRPIVPFLLGISDLKAVRFYIADVIACFFWGLALGFLVT GVGSLLG" gene 341866..342054 /locus_tag="NT01SARS_0373" CDS 341866..342054 /locus_tag="NT01SARS_0373" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71889.1" /translation="MLSIFILVVSTIALIYFLAQLVKAKKQGRLLQTLRDLMIIFLAI LMTAAIFYIGFRVFRVFI" gene 342058..342399 /locus_tag="NT01SARS_0374" CDS 342058..342399 /locus_tag="NT01SARS_0374" /note="identified by match to protein family HMM PF01230" /codon_start=1 /transl_table=11 /product="histidine triad nucleotide-binding protein 1" /protein_id="EJP71890.1" /translation="MSKTLFEKIIDKEIPAEIIFEDEIAIVIKDINPQAPTHLLIIPK KVIPKLSDATDNDKDVLGHLMLIAKDISNQLGLDETFRLVVNNGAKAGQSVFHLHIHL LSGRPLNWPPG" gene 342590..342706 /locus_tag="NT01SARS_0375" CDS 342590..342706 /locus_tag="NT01SARS_0375" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift" /codon_start=1 /transl_table=11 /product="transporter, major facilitator family" /protein_id="EJP71891.1" /translation="MNNPTSKLNREIKAWISYDLGNSAFATTVIAAFFPNLL" gene 342858..343040 /locus_tag="NT01SARS_0376" CDS 342858..343040 /locus_tag="NT01SARS_0376" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift" /codon_start=1 /transl_table=11 /product="permease, major facilitator superfamily" /protein_id="EJP71892.1" /translation="MVTISIVCVALLYTLQAGSWLYALIFFGIANYFFSASNVLYDKI LVQIASPXXXXXXXXD" assembly_gap 343013..343032 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 343079..343618 /locus_tag="NT01SARS_0378" CDS 343079..343618 /locus_tag="NT01SARS_0378" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="3-phytase" /protein_id="EJP71893.1" /translation="MWNYGPFGMTLITTFNNGNATQSEGCVYDDENRTLFISEEQDRG ILRAYKINNELDFSNPIIIDNRSGNIDDDPEGVTVYKSSEKDGYVIVSSQGDSSFNIY NRQEPYNYLGSFKVGSNKDIDNVNDTDGIDVINFNFGNKYPMGLFVLQDGTNDGKNKV KRQNFKYVSFADVLEKLDL" gene complement(343607..344770) /locus_tag="NT01SARS_0377" CDS complement(343607..344770) /locus_tag="NT01SARS_0377" /note="identified by match to protein family HMM PF00561; match to protein family HMM PF06441" /codon_start=1 /transl_table=11 /product="epoxide hydrolase 1" /protein_id="EJP71894.1" /translation="MRKTIDINFIKDQNYLMISEFNIAVSDDEIDLLKHKIELTRWPD EINNKWSHGTDLNFLKSFCHTWQNDFDWRKHENKINETGSFRFTSDSGLKIHFLHSKS NTSNSLPIVMTHGWPGSVQEFLKIIPMLHKAAPMPIDIICPSLPGFGFSDKPTEPGMN SKEIAKIQHELVLALGYKKYVVQGGDWGATVSKWMAELYPEHCIGIHSNMVLAWPPAD KDPSENVTDQEQKLMSNYERYKQEGFGYYEIQKTKPQTIGYGLNDSPVGLAAWIVEKF YGWFDGEDNKLVVSNDEVLAIISLYWFTQSITSSARLYKENGDLGFSFEKIKQPMAGA VFKRDLIASPRAWAEEIYNVVQWNIYDGGHFAALEQPESLSKDIIEFIKKLKI" gene 344795..345298 /locus_tag="NT01SARS_0379" CDS 344795..345298 /locus_tag="NT01SARS_0379" /note="identified by match to protein family HMM PF09335" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71895.1" /translation="MFENIEAFLTDNSQFAWMAVFLFAFLESFVLSGIIVSSAILFSV CIFVFNMELMPIYAIVPVATLGAHLGDMSGFFFGKTVGPSLLSSKFMTKREKLIKRAQ SFLDKTGSYTVLLGRFIPAIRPIVPFLLGISDLKAVRFYLADVFACCCWGIALGFLVT GVGSLIG" gene 345302..345490 /locus_tag="NT01SARS_0380" CDS 345302..345490 /locus_tag="NT01SARS_0380" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71896.1" /translation="MLSIFILVVSTIALVYFLIQLVKAKRQGRLLQTLRDLLIIFLAI VMTAAIFYIAYRVFRVFL" gene 345494..345835 /locus_tag="NT01SARS_0381" CDS 345494..345835 /locus_tag="NT01SARS_0381" /note="identified by match to protein family HMM PF01230" /codon_start=1 /transl_table=11 /product="histidine triad nucleotide-binding protein 2" /protein_id="EJP71897.1" /translation="MSKTLFEKIIDREIPADIIFEDELSIVIKDISPQAPTHLLIIPK KVIPKLSDSTAEDQSILGHLMLVAGQIADQLGLDETFRLVVNNGAKAGQSVFHLHLHL LSGRPLNWPPG" gene complement(345920..346051) /locus_tag="NT01SARS_0382" CDS complement(345920..346051) /locus_tag="NT01SARS_0382" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71898.1" /translation="MEKFFLTWVFTLNLKVFCTFYIKKSIENGNLFAIFLVGGIYGR" gene 346020..346748 /locus_tag="NT01SARS_0383" CDS 346020..346748 /locus_tag="NT01SARS_0383" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="EJP71899.1" /translation="MNTQVKKNFSKEIKAWISYDLGNSAFATTVLAAFFPIFYNQYWS SNIESVLSAQYLSWTLVISNLTLLFTAPLIGAITDISRSTKKLFVSMVMISIIGTGFL YTLQAGSWLYALIFFGIANYFFSASNVIYDKILVQISSPELFSKISGYGYAWGYFGGG FLFLINACMSLYPELFGLSSQADAIRWSFITVSVWWFIFLIPLAITYKEPSAKLLKIR LSRIPSELNEYFYIYLSYRCFYIL" assembly_gap 346822..346841 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(346897..348159) /locus_tag="NT01SARS_0384" CDS complement(346897..348159) /locus_tag="NT01SARS_0384" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00909; match to protein family HMM TIGR03644" /codon_start=1 /transl_table=11 /product="putative ammonium transporter, marine subtype" /protein_id="EJP71900.1" /translation="MEEIKFALDTFYAVMAGALVMWMAAGFTMLEAGMVQKKDVSEIV TKNLGLYSIACIMYLVCGFQLMYAGNSSFFGLFPEIGTSWGLSTATEADPMMYGADGS VADGTFVGYYSHQADFFFQVVFVATAMSIVSGAVAGRMKMLPFFLFAVFLTGFIYPTQ GFWNWGGGFEGLGISYSDYAGSGTVHLCGAAAALAVVTVLGPRKGKYNYDGSVNSMPG SNIPMAALGAWILWLGWFGFNGGSELKVSEVSSATAVSQVFLNTNMAAAGGVVATLFM SLFLTGKMDVTMAINGAIAGLVSITADPLSPTGGTAVLVGALGGALVYVSILFLEKKG IDDPVGAISAHGTVGIYGVLVVSLTGGADFLGQLTGVAMIAAFTYIASLGVIYAINYV MPIRATDEEQDAGLDISEVGIEAYPEFD" gene complement(348172..348510) /locus_tag="NT01SARS_0385" CDS complement(348172..348510) /locus_tag="NT01SARS_0385" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00543" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="EJP71901.1" /translation="MKLVTAIIKPFKLQEVREELVDAGIKGLTVTEVKGYGRQKGHTE MYRGSEYSVDTLPKIRLDVLIEDNALDTVVETISKSASTGKIGDGKIFITSVDEVIRI RTGETGPDAI" gene complement(348510..348761) /locus_tag="NT01SARS_0386" CDS complement(348510..348761) /locus_tag="NT01SARS_0386" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71902.1" /translation="MGDLGLLFAMGQDGAPDYTEVSYGFGAVSFSYGQYNDYGDNLGI SYGFGCGTYDCAVTYTDFSDDGYSGMDEDALVFSVSASF" assembly_gap 348765..348784 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 348873..349415 /locus_tag="NT01SARS_0387" CDS 348873..349415 /locus_tag="NT01SARS_0387" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71903.1" /translation="MLLYFNSIFLFIDGVHTVVALAATFALNLGLDSSSVIIALLMVQ FIAFPSTLMWAYVGEKYSDKFVINFSILIYILIIIYTLFLSNAMEFYILAAMVGFVQG GIQGSSRGLFAKLIPHDKAGEFFGLFNTFGKAGAFMGPALVGLFLALFENVRISLLPI LVLFVLGLIVLYFVKTDETF" gene 349456..349590 /locus_tag="NT01SARS_0389" CDS 349456..349590 /locus_tag="NT01SARS_0389" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71904.1" /translation="MGFMIIPWIRSLLDYSAIVEILITTAIIIPMYAVLTRLMKNFLN " gene complement(349583..350317) /locus_tag="NT01SARS_0388" CDS complement(349583..350317) /locus_tag="NT01SARS_0388" /note="identified by match to protein family HMM PF03009" /codon_start=1 /transl_table=11 /product="glycerophosphodiester phosphodiesterase" /protein_id="EJP71905.1" /translation="MKRYLEYDGLKVLAHRGGAEESFENTLESFEYSQSIGCEFIETD VQASSDGVPYIFHDDDLKRILNKSVKFNELSSKEIDELQIFEKYKIPKLSETLIQFPN LLFQIDFKTDEVVDPALNVIHELNVMDRVCIASFSSNRLNKVRSLNSELCISMGPNEV LQTFLSSWNLYKGEIVGDCLQIPIRYYGLKIVTKRFVDFVHSKGLKIMVWTINDVKTF KYLIDLGVDGIITDKPKLLFETLDTS" gene 350382..351494 /locus_tag="NT01SARS_0390" CDS 350382..351494 /locus_tag="NT01SARS_0390" /note="identified by match to protein family HMM PF01553" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate O-acyltransferase" /protein_id="EJP71906.1" /translation="MNKFDSIRPYTDNEVNEVLVDLSNNRRFLKMLFANGEYSYLRLL PFSRKILGFILRNKVKSIHDVQSYQNFFESIVNSVVENSIKNFTVNGIENLNPNTGYL FVSNHRDITLDSALLNLTLHKNNLGTTNNAVGNNLLSEKWASDLMRLNKSFIIDRSDK SKREIYQSLNLASEFIWDSISNKNESVWIAQKQGRSKDGNDFTDPSVIKMIHLNARKK MSVDKYLNSLKVVPVSISYEKDPNDITKATELYLTDLNSEYIKDSKEDLKSISDGIRG HKGDVNLNIGEVMHFNNDSYDDCSVKITETIKQSYKNHATNYAAAILQGKNFAANEFT NEEIDDAITYLNKRMEQISGDVEPYFLQQYSNSVIS" gene complement(351596..352858) /locus_tag="NT01SARS_0391" CDS complement(351596..352858) /locus_tag="NT01SARS_0391" /note="identified by match to protein family HMM PF00909; match to protein family HMM TIGR03644" /codon_start=1 /transl_table=11 /product="putative ammonium transporter, marine subtype" /protein_id="EJP71907.1" /translation="MEELKFALDTFYAVMAGALVMWMAAGFTMLEAGLVQKKDVSEIV TKNLGLYSIACIMYLVCGFALMYSGSSSFFGLFPGIDTSWGLSTSTEADPIMYGADGS IADGDFVGYYSHQADFFFQVVFVATAMSIVSGAVAGRMKLLPFFLFAVVLTGFIYPTQ GFWNWGGGFEGMGISYSDYAGSGTVHLCGAAAALAVVTVLGPRKGKYNYDGSVNPMPG SNIPMAALGAWILWLGWFGFNGGSELKVSEVSSATAVSQVFLNTNMAAAGGVVAALLL SLALTGKMDVTMAINGAIAGLVSITADPLSPSGGTSVIVGAIGGIIVYFSILFLEKRG IDDPVGAISAHGIVGIYGVLVVSLTGGADFLGQLTGVVMIAAFTYVASYGVVKFINMV MPIRATDEEQDAGLDVSEIGIEAYPEFK" gene complement(352871..353209) /locus_tag="NT01SARS_0392" CDS complement(352871..353209) /locus_tag="NT01SARS_0392" /note="identified by match to protein family HMM PF00543" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="EJP71908.1" /translation="MKLVTAIIKPFKLQEVREVLVEAGIKGLTITEVKGYGRQKGHTE MYRGAEYSVDTLPKIKLDVLIEDNSLDTVVESISKTANTGKIGDGKIFITSVDEVIRI RTGETGPDAI" gene complement(353209..353799) /locus_tag="NT01SARS_0393" CDS complement(353209..353799) /locus_tag="NT01SARS_0393" /note="identified by match to protein family HMM PF09694; match to protein family HMM TIGR02001" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="EJP71909.1" /translation="MKKLLLLITLVSLPSYSAVSANVSFATDYIWRGMTQSDGPAVSG GFDYAADGGFYAGIWGSNVNFNNGAGSELDYYFGYGTEMGSVGVDIGYIKFDYPDSDP DISFEEIYVGLSMGDLGLLFAMGQDGAPDYTEVSYGFGAVSFSYGQYDDYGDNLGVSY GFGCGTYDCAVTYTDFSDDGYGGDEDALVFSVSASF" gene 353918..354688 /locus_tag="NT01SARS_0394" CDS 353918..354688 /locus_tag="NT01SARS_0394" /note="identified by match to protein family HMM PF00106; match to protein family HMM PF08659" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase type-2" /protein_id="EJP71910.1" /translation="MNLDNKVALVTGGASGLGQATVEKFVEKGAKTVILDINEDNANK IIENLGDDNVMFVSTNIMEEEPVVNAINQIKDKFGGLHIAVNCAGTGYPGRILGKEAP HPLDAFQFIINLNLVGTFNVMRIAAELMDKNEPDEKGEKGVIINTASVAGYEGQIGQS AYSASKAGVIGLTLTAARDLARHAVRVCTIAPGIFDTPLMQLAPDKVRDPLLESTQFP HRFGQPSEFADLAVHIVENAYLNGETIRLDSGMRMKPR" gene complement(354689..354820) /locus_tag="NT01SARS_0395" CDS complement(354689..354820) /locus_tag="NT01SARS_0395" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71911.1" /translation="MKDDYKEYFDSDEANQDSKSDAKVILFLIVVAVIATTYWVSVQ" gene complement(354823..355806) /locus_tag="NT01SARS_0396" CDS complement(354823..355806) /locus_tag="NT01SARS_0396" /note="identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="EJP71912.1" /translation="MKYSAYQVSENDGKFVGKICELEKPDLINDHLIIKVKHSSLNYK DALAASGARGVVKSYPFVPGIDVAGEVIESGSSDFSVGENVIATGYKIGMAVPGGFGQ IVQLPSNWVVKSPDKLNSSEAMSYGTAGITAAACVKKIVDANISKDLPVLVSGSTGGV GSISVGILKKLGYQVHAITSKKDQNKTLEAMGATEIINRDDYISEPAKALDKAIYGAA VDTVGGDILAKMISMISNQGVVSCCGNVAGAMFTSSVFPFILRGVQLSGIDSAESSLA LKKELWDLLADQWSIDLTTQTKTVNLDGLSVEVDKILNGGQIGRVIIEHGE" gene complement(355811..356749) /gene="trxB" /locus_tag="NT01SARS_0397" CDS complement(355811..356749) /gene="trxB" /locus_tag="NT01SARS_0397" /EC_number="1.8.1.9" /note="identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292" /codon_start=1 /transl_table=11 /product="thioredoxin-disulfide reductase" /protein_id="EJP71913.1" /translation="MSDNHHKLIILGSGPAGYAASIYAARAGLEPIIIAGMQEGGQLT TTTDVENWPGDSDGLQGPELMDRMKKHAQQFDVDVINDHINSVELKERPFKLQGTSEY TCDALIIATGASAMYLGLPSEKEYLGKGVSACATCDGFFYKDQEVAVIGGGNTAAEEA LYLSRICSKVYLIHRRDELRAEKILQDRIFDEEKNGKIEVLWDSQLSEVLGNDMGVTG IKIDTKGNISEKSVMGVFIAIGHKPNTDIFDGQLDMDNGYIIINSGLNGSVTRSSIDG VFAAGDVSDQIYRQAVTSAGFGCMAALDAEKYLSEK" gene 356828..359131 /gene="ftsK" /locus_tag="NT01SARS_0398" CDS 356828..359131 /gene="ftsK" /locus_tag="NT01SARS_0398" /note="identified by match to protein family HMM PF01580; match to protein family HMM PF09397" /codon_start=1 /transl_table=11 /product="DNA translocase FtsK" /protein_id="EJP71914.1" /translation="MPPYIRNTLLNFFSFFLIAFSLYIFISLVSYDATDSGFFNKNSN DVINNLGGPLGALISDLMFTLIGFGSYLVLLIGSVWAIQSLFIDDKYNSALKVLVRLA SSFFIILSFCAVGAFYVTENFGGVIGLNVLTFLSSLIGYIGTLIFLIVLTIPAMSFSF NFSWLKTIDVLGNLIINISKFSLNLIKNIFAFLLKFFNSIRSLLSEINQSLKSRSIKE NVKKSSKPKISSEPQTPKEKIINDVSAVSKQPDLPIKDETQLKEVPKLNTEEEDEKKE KTVMPSTELLDRALDDGSSLSETELNQIASLLETKLEEFGIEATVESVLPGPVVTRFE IQPAPGTKASKITNIAQDIARSLSVSSVRVVEVIEGKSFVGIEIPNNNRKMVRLTEIL SSKAFKSSPSNLSVALGQDISGNPIVVDLAKMPHLLVAGTTGSGKSVGLNAMLLSLLF KSDPEEVRLILVDPKMLELAVYDGIPHLLTPVITDMTDASNGLRWCVAEMDRRYKLMS MMGVRNLAGFNKKVLEAEKNGKQILNPLKEDEDEYLEVLPSIVVVVDEFADMMMLVGK KVEHLIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIGFQVSTKIDSRTIL DQGGAEQLLGYGDMLYLPPGVGVPVRVHGAFVGDDEVHRVVNDWKSRAEPNYIDEITS STQDTGPIPGWSGSETSSSEETDELYDEAVNFVIESRRASISAVQRKLRIGYNRAARL IETMEEAGLVSEMSSNGSREVLVPKRD" gene 359155..359616 /locus_tag="NT01SARS_0399" CDS 359155..359616 /locus_tag="NT01SARS_0399" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71915.1" /translation="MIIPLTIESSTSEQLNDFFDSDLTFTQTSLNKNKNLIEESEGIF KRLEDNTIVIEISTPFRENYFIDKNKIEIHDLDFDQVRIIRREDIKENIFLGYLVDGF DDSYISSELNDYEFKLKINEQNIDLKFINKNHLQVKFKDNMDINNLINFYK" gene 359618..359977 /locus_tag="NT01SARS_0400" CDS 359618..359977 /locus_tag="NT01SARS_0400" /note="identified by match to protein family HMM PF02537" /codon_start=1 /transl_table=11 /product="CrcB-like protein" /protein_id="EJP71916.1" /translation="MLLNIVMVGLGGALGAVSRFFTNEIFSIYFPDSSWIATLTVNVI GCFFIGLALGSFVSNKDIYFYFFIIGFLGSFTTMSAFTHQVILISNSNIIFAVSYIML TIFLTILATYIGVSFTK" gene 359977..361224 /gene="serS" /locus_tag="NT01SARS_0401" CDS 359977..361224 /gene="serS" /locus_tag="NT01SARS_0401" /EC_number="6.1.1.11" /note="identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414" /codon_start=1 /transl_table=11 /product="serine--tRNA ligase" /protein_id="EJP71917.1" /translation="MLDTKLLRENFDEVKKSLANRGFDLDKNHFDEIDKQRKSLQIEV ENLQSERKKLSSEYGERKKSGQDTEEIKSKVDSINATLKDKEDELNNYLEKLNDFLMG IPNIPDDSVPTGSDENDNVVINKFGEISTKNDLDHLEITNEIDTELAAKLAGSRFAVL KGEIAKLQRALITFMIDNAIKNGYKEFYVPFMANVESLTGTGQLPKFEEDLFQSSDKL FLIPTAEVPLTNLFRDEFLNPKDLPIKVTSHTPCFRSEAGSYGKDTRGLIRQHQFEKI ELVQVTSPENSMECLDNLLANACEILDLLELPYQVIELCTGDLGFSSCKTYDIEVWMP SQNKYREISSCSNFSDFQARRANIKIKDEGKNYFAHTINGSGLAVGRTLIALIENNFD GSDSIKIPKNLESYFGSNTIKIN" gene 361221..362183 /locus_tag="NT01SARS_0402" CDS 361221..362183 /locus_tag="NT01SARS_0402" /codon_start=1 /transl_table=11 /product="alkaline phosphatase D domain protein" /protein_id="EJP71918.1" /translation="MIKKLSIKSFIFLSVFSGVLTADSYKFGVGSCLDQDFPQPIWNQ IEEEDLNYFIFLGDNVYGDVPSGSLWKLPRAYKKQKKLFPDFLSEIEKFAIWDDHDYG KNDGGSEYRHKEKAQRLFLDFWQIPKDDVRQSREGIYFSKDANFFDKTFKLIFLDTRY FRSNLTTINGDYVQNKNPDATILGYDQWQWLEQELNKDFDFLIIFSSIQILAEDHEYE KWSNFPLERDKLLNLINNYKDNTLLFSGDRHRAGIYKKNNLFEITASSMNKPGSSFVE TDKYLIGETYPQENFVFMEVFEKTIYVGIKDMYGNTLNSISVNY" gene 362358..365531 /locus_tag="NT01SARS_0403" CDS 362358..365531 /locus_tag="NT01SARS_0403" /codon_start=1 /transl_table=11 /product="putative outer membrane protein with a TonB box" /protein_id="EJP71919.1" /translation="MKKILLAFLPVLLLTTSLSANVDTTARIKGTVNVSGASVEATHT PTNTTKTVVSSASGNFNINFLPIGGPYKIKISKTGYATQTIDVMSLTVAEPLKIAVNL IADDIDEVQVIASKVSTSKVNSGSVLSSERIASIPTITRNIADYLKFDPRVSVNGANA RSTEISVLGKNSRLNDFTIDGVSFNDAFGLNDSGFATMKNPISIDFVDEITVDITPYD VSKGNATGGTITAVTKAGTNEFHGSVYTTQRDKSNVGDLPNGEEYSDFDEEALAITLS GPIIKDKLFFFIGYEESEDTRPSLWGTSDSNATNKWGTSSQTMDAVAKHMLDTYGYTA GSYNSITFPTTQEQLLVKLNGNINDNHAAELIYQVTEDSFYSNYDSSANPVFSNNYYE IPPETDRVTLNIYSDWTDRFSTRIRFSDRFFEQDANSGDGGYGGLMPEFHIYGLPNRE IIYVGADRYRGHNLIEVDQQLMSIKGNLDLDDHYITFGYETDSSSIYNSFINRYTGEL NFSSLDDFYAGNYNRVEVFAVSIDSGGPYSLVRDDPALPAARFDIDETIMYIQDEWQV SDTLSLVFGVRHYDFDIPQQTLLNTSYESKFGFRNNATVSYTITQPRFSFDMDVSDSL FGDSDKVVAASLTGGYGLFHGRLPKVFFSNGFGRSSVDSFYSRFGGGGPSSACAGPIP NLSSGAVTGVTDPRFFWYRSAASTCALKGASSNWYGYTHGTDPDFEGPSTWRGNLKLD MLTASGYDISLEYNRDTVRKDVDFKDYSYSERSVLADGRPVTSSRENTYITNTTFGGG YSFTTAVQKGFENGVEFYFGYTNMEQRDVAAMTSAQHSSSYGYQPRGYGEIVPAARSS FMNEHKFVLALSYTTQIIGDNDTTFSLLGIRKSGEPHSITFGGDSFNGSGRDGYDLAY IPTGVNDPNVVFASADVANEVMAFVNSKGCISAYAGTIIPRNTCDNPWQGRIDLRITQ EIKLGDNGHKLVGYFDIQNLYNLLSNSRGWAQEVNYNVSRAIDIDGADSSGRYLISGV DTDDSYFYSTANGQSMWQINFGLAYRF" gene 365594..366496 /locus_tag="NT01SARS_0404" CDS 365594..366496 /locus_tag="NT01SARS_0404" /note="identified by match to protein family HMM PF03171" /codon_start=1 /transl_table=11 /product="oxidoreductase, 2OG-Fe(II) oxygenase family" /protein_id="EJP71920.1" /translation="MTNQVPELSFKDIEKGDTFSINILKDALSNHGFFSITDHGLSQD LIDRCYACSKDFFDLDFQEKEAYSSVGSKGARGYTPKGIETAVGEKIADQKEFWHHGP VIDDSYDKKIPPNIYINEVPNFNENFDQLYNELHKIGSRVLSVISLSLGLDKDYFSPW IDKGNSLLRSIHYPPVQGNTNPHRARAHTDINLITLLIGAEEGGLEVLNKDGSWIKVE PSSNAIVCNIGDMMQLVTDKQLVSTTHRVIQDLEQESKARYSIPFFLHPAPSINLKSV FRENDDGILADDFLDERLKAIKLY" gene 366503..367759 /locus_tag="NT01SARS_0406" CDS 366503..367759 /locus_tag="NT01SARS_0406" /note="identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670" /codon_start=1 /transl_table=11 /product="inner membrane transport protein YeiM" /protein_id="EJP71921.1" /translation="MDILYIIQILIGFVGLVLIAFPFSSNIKIINYRHIIYAILFQLV LAFILIKIPVITNLFSYLADGVAALQVATGKGTEFVFGYLGGGALPYELSQKGSALIF AFSILPFIIVMSSITATLWYWGILPFIVNVFSKICQKLFNIGGPIGLGAAANVIVGQV EAPLLIRPYLAKLSNKELLILMTAGMSTVAGSIMVALVSMLQIQFNDLNLIQHFLTAS ILSVPAAILFANVLMPSNEVTDFEGDETPKIYENTMDAITKGTRDGTDIAIGVGSILI VFIALVYLVDSLLGIFSIGSQSLSLQMILGYLFAPIAWLMGVPWDEAIVSGKLLGIKT ALNEFVAYAELANLQDGILSDRSKLITLYGLCGFANFSSVGILVSGIGAMSPERKPDL IKVSLRALIGATLASCMTGTVIAVFI" gene complement(367756..368202) /locus_tag="NT01SARS_0405" CDS complement(367756..368202) /locus_tag="NT01SARS_0405" /note="identified by match to protein family HMM PF03073" /codon_start=1 /transl_table=11 /product="probale sensory protein" /protein_id="EJP71922.1" /translation="MFRLNSKANLVLLIPLTLIVGSFASANTGTDMWYQGLIKSDLNP PGYVFGIVWPILYLLMGITAWRTFEIIKNLFYVQLFLNAIWSWLFFSFHLPLISLIDI WLLIYININIVYKVLKMDKLAGLLYVPYILWLLFASYLNLFIVINN" gene complement(368202..368345) /locus_tag="NT01SARS_0407" CDS complement(368202..368345) /locus_tag="NT01SARS_0407" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71923.1" /translation="MGEYDAVWVFFISLAFVGFYIFIEARPKGSNLFRDISNTISRFF RKR" gene complement(368387..369502) /locus_tag="NT01SARS_0408" CDS complement(368387..369502) /locus_tag="NT01SARS_0408" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71924.1" /translation="MSDVHIAGTGIWFPEDIITNDEIVSSFNSYVDNFNNHNKNDIEQ GNIEAMEYSSSAFIEKASGIKTRHVIDKKNILDINTMMPRVVHEDESRLSIHAKAGID AAKKAMDQANVGPDDIDGVILGTSHAARNYPSVAIEIQNELGIQGYAYDMLVGCSSTT FAINNAYSDIASGLANTVLVINPEISTPFVNYAKRDIHFIFGDGCVATVISNNKKSNN QYKILDRKLITKFSNNIRSDWSYLVRAASDEKSIEDLLFYQNGNSVFKEVCPMVAEFI TTHLKDNNINPSEVSKFWLHQANSRMVNLIVSKVIGTDDFDTSLAPLPIEKFGNLASA GSMFAFNLHNDLEKGDKGIICSFGAGYSVCSIIVEKQ" gene 369542..370435 /locus_tag="NT01SARS_0409" CDS 369542..370435 /locus_tag="NT01SARS_0409" /note="identified by match to protein family HMM PF00561" /codon_start=1 /transl_table=11 /product="lysophospholipase L2" /protein_id="EJP71925.1" /translation="MNLNTSIDKKYIYRYLSSNKQINGMFHISHGMAEHIGRYNWLIN KLNEDGYHVIAIDHRGHGKRIEDNLKGYFADKDGWDHVVNDLVDIIEESSREFPDLKQ YLIGHSMGSWIALGAIQKGINIDCCVLSGSSKVPKNLIKFQRIIISFLITFFGKKSTG YFLDRMILGEYNKSFSPNRTPKDWISSDNQNVDEYIADPLCGFPVTNGLWNDLSSGFL RVFDGRNYEMSKNIPLLIISGTHDPVGGNSKGVKKLHEFLSNIFENVELELINNARHE VFSEINKENNYNMLLNFIEKI" gene 370504..371460 /locus_tag="NT01SARS_0410" CDS 370504..371460 /locus_tag="NT01SARS_0410" /codon_start=1 /transl_table=11 /product="putative esterase" /protein_id="EJP71926.1" /translation="MLFDKEERHYFVYIPKEQSNQTDKIVIGLHGYTGSATGFEMETT GGFNNSAEKYNFIAVYPQGSYFYEQKLERGKISSEYISSWNDLTGSKTKTPFGETCAE DAVVYPKYPNCIGTDAGRCAWTSCGDDMGFIKQIIDDVKKRFDLKKIYVVGMSNGGKM AHALACEFSKDISGVINVVGSPQNGLACEPKTPINYIIYAGAEDKVVPPFNVVSFDKY FYTPVSTLVNKWTTSFNCKKKEFLTNIEFDNIKEQIYSDCDDGVRIVSLLNTEQGHSW PGTEEYMGFCRTKYQTEIDLEPCSNTINEWGNDFLLQRLFSQ" gene 371553..373943 /locus_tag="NT01SARS_0412" CDS 371553..373943 /locus_tag="NT01SARS_0412" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="EJP71927.1" /translation="MSRIQLKPLFEKKVDPLTSLLRDIFKDNNYAMSWLGALSIGIGV SNTNNVNAQDSVEEVIVTASKKEQNIQDVAMSVQAISSSELEAKNIKNLEDIASISPA VTFNNVGPGKSNFYIRGVSDGAIMNSYASPEATTALYIDEQPLTAASLTPDLHIYDIE RVEVLMGPQGTLYGSSSTSGNIKIITKKPDPSGFDMGADVEYGSIEDGTNDKSLEAFI NIPLGSSLAARVSTYDVQDGGWIDNKKADYTYQNYGINYTINNYTAPYAVAKDDYNDA SKTGSRIRLATDFDNFNLDLSFLTQESQYNGSYETDPLTDDQSSPMPKRSNTRFSAER YDDEFDQMSLTLTGSISDNIDMILTSSIFERDTAYTYDYASYVEYYAYAAYPTYVCDY YDYYYYGNISNCRDPRMTYAQTNEIERTSTEFRLQSNNESGFNWILGAFKETNEKVTD VDYLQPGSIYPTFWEADLVRKGDIDAIFGEAYFDISDKTELTVGLRNYDQKMNLVASD GYYGSYSFGISNLNFKSSESGTIPKVSISHDISDDVMVYGSYSEGFRPSGVNRPRPSQ AGLIPETYDADYLDSYEVGVKSSLQDGKLILNGALYRMDWTDYQTSTYNSDITSVAYT ENVGNAEINGLELNLVYSFDDSTSMTFYMNKMDPTLSEDYYYVSGELGANSGNRLAYM PELSYYLSFDKNFVLSNGKPGFVNLDYSYTGDRNSTYENSPILIPSYSIANLRAGIEN ENSTIEFYVTNIFDKDALLSTYDDFSAVGSSGYAGFGYRDTRTKPQVVGIRIRYRY" gene complement(373940..374767) /locus_tag="NT01SARS_0411" CDS complement(373940..374767) /locus_tag="NT01SARS_0411" /note="identified by match to protein family HMM PF00561" /codon_start=1 /transl_table=11 /product="putative hydrolase, alpha/beta fold family" /protein_id="EJP71928.1" /translation="MEIDTSKKSILFIPGAGMDHRILSMFKMDSFVDEYNIIAIDLPG HGYTTGPLFYDVESHTKLCIEVLNELNLKNLILSGHSWGGLIALDLSTQYENDMTICM NIAYPFLVGDLLLDYAKGNLDQCVEFLMKYGIYKMPETEIKTLGFGVKGSGFYGRSKG VIKSPYGTKTVEDDPEREIKLYPLKRLFNQTEKEISSIDLKSCTNFRLKDDQISNIQN VKYIFCDKDKLARFDAENIILKNVNPEEDVFILKETGHFPYFEDPDQLEDVFKKILN" gene complement(374787..376289) /locus_tag="NT01SARS_0413" CDS complement(374787..376289) /locus_tag="NT01SARS_0413" /note="identified by match to protein family HMM PF02028" /codon_start=1 /transl_table=11 /product="putative choline/carnitine/betaine transporter" /protein_id="EJP71929.1" /translation="MHYLIQAYKKMINPNWNLSVISITILLSLVLSIFVLLDPSSTSK ILNSVYYDLSVKFESFFMYGSFILLIVLLLLAISRYGTIKLKLNNRPTYSLLSWSSML FAAGIGATLLYWSTVEWIEYFNILKNDQMEDENIMMYSRSYPLFHWGFTAWAIYCLPV VAFGLALSLKPKSKLTFSGILFFENKIIKFLLDVLFIGAIICGAGVGLGLSFPLISSV ISEILNINRSITLDLTTILICSAIFATSAYVGVQNGIKRLSNINMVLVISFLAIILVI GPTTYIIENSINTMSFFFSRYIDMSLTTGTNISIDWTVFYWAWWYALAPMVGTFLVNI SNNKTLREIILGTIFIGSFGCIFSMLILSNLSISLFENNTLDSPSIIANNLLSREQLV VETISQVPYGEIMLVSFALIIVIFLCTTYDSTAYVLASASMKSSDITSSKSLRLLFSL LLVVQPTLLMFLNGVDSFKWIMVIFSIPLLFINILLMYSVLRNVYSIKKS" gene 376268..378226 /locus_tag="NT01SARS_0414" CDS 376268..378226 /locus_tag="NT01SARS_0414" /note="identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719" /codon_start=1 /transl_table=11 /product="TPR repeat domain protein" /protein_id="EJP71930.1" /translation="MPELNNAKFAFDNAVKLLNDNNLKESVEQLNEIIKIEPNHIKSL NLLGDIYIKLNKPKESLHFVNKVLNIEKFNKFNLEKKYKLLLFLGNESSSHETLELLH KKHPSINTARELSNYYLKIDDEEKSDNVIQDFFESDKTYSELYKGIRHVKAGRFKLAE EAYKKVLKKDKNNIDALRLLGLLAFKNKNYTIAENLFIKAIKIDQHFHLLWDNLAKVY RIQNKLDKSKKAFQNLIKLDPYNLEALIALGTIYVKLADYNAGIDTYREVLKLKDSNP RVYLSMGHALKTIGKRKECEEAYHKAIELFPLCGEGYWSLANLKTYEFSDKQIFKMEN SLEDKIHEQEKIQMLFALGKAYESRKNYKKSFEYYEKGNWMQRKLVDYNAHENSNNID SIISFFEENYDNINFSSGFDTNEPIFILGLPRAGSTLLEQILSAHPEVEGTQELHNIM TIGRRIKSINNSDNYLNNLLNLDETKLKMYGKMYIDETKWARREKVLFIDKMPNNFPH IGLIKMILPNAKIIDARRNPMDGCFSCFKQYFAKGQHFTYDLDDIARYYKDYVRLMNF WNEYFPNDIHTVIYEDVINNPEDEVRKMLNYLNLPFEKACMDFYKSSRPVKTASSEQV RQPIYKSALNYWKNFEEDLSILSNHFNE" gene 378219..378902 /locus_tag="NT01SARS_0415" CDS 378219..378902 /locus_tag="NT01SARS_0415" /codon_start=1 /transl_table=11 /product="putative exonuclease" /protein_id="EJP71931.1" /translation="MNKFNYPKLERVDTEIGRHYRDSNNNLVPSVTTVLSGTSDNKDG IEKWRKKVGDIEADRIMKQSTDIGTAVHEAIEKFLGNNDWDHFQDTSDQIMARKMTSK FVDLGLNKISQVWGLEVGLILDNLYAGTADCVGTYGDVPSLIDFKTARRIKKREWIED YFLQGCAYANAHNVMFNTEIKQIVILMVDRDLMFKEFIVRSDEFTFLTEKWKKRLITF KNKYSDIRG" gene 378905..379603 /locus_tag="NT01SARS_0416" CDS 378905..379603 /locus_tag="NT01SARS_0416" /note="identified by match to protein family HMM PF03575" /codon_start=1 /transl_table=11 /product="dipeptidase E" /protein_id="EJP71932.1" /translation="MRQIIAIGGGGFGREIKDLKIEKYIVEQCRSENPNICFIPTATG DDQGYIDNFYKAFDSLGCKTSHINFFKRTINLEDHIKDQDIFFIGGGNTKSMLAVWRD WGLDKLLYNAYKKGAILSGVSAGAICWFEQGITDSWKEHQAIIPCLGFVKGICCPHYD EEPERIPFVKKILEGNEIDECIAIEGFCALHLINDLPTYSVSFGNGNNCFLVNRKKSI IQHNKLKNIEEIQL" gene 379600..379977 /locus_tag="NT01SARS_0418" CDS 379600..379977 /locus_tag="NT01SARS_0418" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71933.1" /translation="MKIANALSIVLGVVLFLIAAQWIFTPATAAETLSMPFLEGDARN TQIRDFTAFFLATSIMCFLSFFTKKYEFIFCCGLVYMFAAIFNVISSIYHGAPLGLSS LISEIVFTSMAYIAALNFKKAHK" gene complement(379968..380519) /locus_tag="NT01SARS_0417" CDS complement(379968..380519) /locus_tag="NT01SARS_0417" /note="identified by match to protein family HMM PF00881" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="EJP71934.1" /translation="MDALDNILNRVSARTLSNPIPSKDEMETVYKAALRAPDHAWLRT SSFIEVKEDGLDKLSDIFFNFGKTIPNIADEVLEKYKNAPYRAPMIIILVNTFKEHPK VPPIEQKLSTAAAAQNIMLALNAMNYACIWRTGKMAFNKVVQENLNLKDHQEILGYLY VGTEVGNKKKIPNLEIDDFVSYL" gene 380579..380731 /locus_tag="NT01SARS_0420" CDS 380579..380731 /locus_tag="NT01SARS_0420" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71935.1" /translation="MLYQIGLIVLIVYVALVLSKRFNSTKNGNDLIYEDEMDDEELSS IDEEIH" gene complement(380728..382218) /locus_tag="NT01SARS_0419" CDS complement(380728..382218) /locus_tag="NT01SARS_0419" /note="identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842" /codon_start=1 /transl_table=11 /product="glycine betaine transporter OpuD" /protein_id="EJP71936.1" /translation="MNNISKSRFFTAVASIIFITTVVSLNSSVSEVFFLNLQTFLSKY LGWMIILLANGFLVFSIYLLFTRYKDIKLGGSGATPAYSYTNWIAMLFSAGLGIGLLF YGVAEPIMHLNSYPGMIDGNVSYNAGKAIGLANLHWGLHGWAIYSSLGLCFAFASYNK NLPFRVSSLLGSKVASNKNLAITIDVIAILTTVFGVTTSLGLGTVQISAGLNHVFEIN ENFINQLMIIAFITAIGLVSVSLGLDSGIKKLSQINMVLAISLLLFIFILGPTIFIIN ALIQNFGAYLNTLIQSATWTEVYNDTSWQNGWTLFYYAWWFAWAPFVSLFIARISYGR SIKEFIIGVLFVPSAIVFIWMGVFGNAAIYQVINETSQISEMVSSNLPVALFTLFDVY PIAQFLSILSLILIVTFFVTSSDSGALVASMLSSKSQSNINDDSPMLSRITWAILLGV LAAVLLYAGGLTALQTSVVITGVPFALIVVFACKQFLKSLKEEIIN" gene 382465..384960 /locus_tag="NT01SARS_0421" CDS 382465..384960 /locus_tag="NT01SARS_0421" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="EJP71937.1" /translation="MFNLIKTKEQLNNLKNKVSLGVLGAVAAMIPQTAESQERQIEEV VVSATKKDESASKIPVTVTALTEETLKEMNVSNFDEYVEYLPNVTSGGRGPGQSTIYI RGLAVDSVNVMLATAAGSQPNVALYIDEQPAQVPGRNLDVYVADMERVEVLPGPQGTL FGASSQAGTVRLITNKPKFDTFEGGFNTSTFATYSGDPSNSLDAFINIPINDAWSIRG VFYNSTQGGYIDNVGGTVSSQGKGSFASLVPVGRFKTTDNSELVEKNFNEATYEGFRL SSRMAFNDNWELLVTHIDQQLESDGVWDYDPAVGDLEVMRFQPDTLEDSFDQTAITLD GRMGMLDVLYTGSFLNREADQTVDYTGYINTGAYMPYYTCAYWGSQLANAGMIPTCGS SEVRVDVVDENERTTHEFRVSTNELSELPFSFTAGVFIEESVLDTQNDFGYLGFLDLI PLLGYAVPNNQIISGVYANNPNPRPPEYRFFNDITRTDEQIAYFAEVTLPITDQLSFT LGMRDYELDLDYEGQSKFGLLTSNSQSGRDYNSTAGHTDQPITENDTITKFTASYQKD ENTLMYFTRSEGYRPGGWNRNAGVTPKCRGYATTDPNYCGGSPGDGTYRADIPLAYKS DEVLNTEIGIKTLLMDGAMRLNATYYNIEWTGIQVSQFDPVHVNFITFVENAANADIS GVEADMLWYPSDTLTVAAAISLNDTEIVEDVAKTIPIVDIGNALPLAPKRQWNVRLRK DMGANDGYLQVVYKSASETYNSFEAAKVKDQPSYEIIDLAYGMTINDVDVEFFIRNAG DERANLYYNDQDDIPRITTNRPRNMGVRLSYSF" gene 385020..386975 /locus_tag="NT01SARS_0422" CDS 385020..386975 /locus_tag="NT01SARS_0422" /note="identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719" /codon_start=1 /transl_table=11 /product="sulfotransferase" /protein_id="EJP71938.1" /translation="MISKESTVKKIQKEISSQKYDEAIKLIEHNKRDLVEIDYWYYLS LCSRYSKKYNEALVILNNVIKIDPSYARAYQEFGHNYFKLNNYKMSLKSYLRAVRYNP TLHASWLGILGIKNVEQNIIDLATQNVLYLKNLPPELKSVSSFIYEGKYKKADHLCRD FLKNHPHHIEAMRLLAKIGKELHVYDDSEFLLESCLMFDKDNFDVALDYIDVLIKRQK YAKALEEAEKLYSKDKDNLRFMIAYAVTLQQTNKQEEALELYNKILNIDKKNPEILVS KGHLQKTFGDLKGSIDSYKKSYKIDQYYGDAYWSLANLKTYQFNDEEIMQLEKMTQDE FINDNEKIYMSFALGKAFEDRGEYDKSFTNYQNGNSLKKEFTKFDLKLFDEECKNQKE VCTRDLFDSKADWGLETKEPIFVLGLPRVGSTLIEQILASHSMVEATHELPNILALSH KLNLRKVQEKTSRYPEILLSLSAPQLKMIGEQYIKDAEIFRTNKPFFIDKMPNNFRHI GLIKLILPNAKIIDIRRNSMSACFSCYKQLFAEGQEFTYDFGDLAGYYNNYVELMEHW NQVLPNQILSIKYEDLVNDFENSVNKILNYCNLDFEDECLSFYKNKRSVRTPSSEQVR QPIYKKGLDYWKNYDVYLGDLKRDLKY" gene 387022..387402 /locus_tag="NT01SARS_0424" CDS 387022..387402 /locus_tag="NT01SARS_0424" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71939.1" /translation="MVELLVYVLLFYVLHLFLRMSFSLHKVPFLEWTYTGGDISNMTD LSARMTLAADNLRQSLPVFLVFCVLSLINNVDNLMLAKVWFGFRILYLIGAMLNLYRF PLIRPVIWLPSIVALVMMGLNIIS" gene complement(387399..387701) /locus_tag="NT01SARS_0423" CDS complement(387399..387701) /locus_tag="NT01SARS_0423" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71940.1" /translation="MVSLPLSADFDNKCSVLITLRFQSNDDAYKDAISKIEQCQKNDI ISVTSFLEKAVSKIYITDIIQSYCMFNHEIVSIIDEKTSNLSCVHRGKKRSERKLD" gene 387776..389455 /gene="ggt" /locus_tag="NT01SARS_0425" CDS 387776..389455 /gene="ggt" /locus_tag="NT01SARS_0425" /EC_number="2.3.2.2" /note="identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066" /codon_start=1 /transl_table=11 /product="gamma-glutamyltransferase" /protein_id="EJP71941.1" /translation="MKQFNYIFLIILSLNVTGYDRITGLEFASRSEVIATNGMAATSH PLATQTAISILKNGGNAIDAAIAANAVLGLVEPTGCGIGGDLFAIIWSADEKKLFGLN SSGPAPKNISINKLKQKGLEKIPPYGPLPVTVPGAVAGWVSIHKKFGLLEFNKLFNDA INYAENGFPVTELVSYYLERSSEIFAAYPNFKDVWMPNGKTPKKGEIFINKNLAENYK EIANTYGKSFYSGKIAENIVNTVNAQGGFFSMSDLNSFEPEWINPVSTNYRGYDVWEL PPNGQGIAALQILNILERFDIESMGFGTSDYIHLFTEAKKVVYEDRAKYYADTNFSDI PVEKLISKEYANERSKLINLKKSSKLFNPGNLENGDTIYLTVADSFGNMVSLIQSNYR GMGSGVVPDNTGFMLQDRGEMFSLDPNHMNSLMPGKRPFHTIIPAFVTKNDKPFISFG LMGGAMQPQGHAQIIVNLVDFKMNLQEAGDAPRIRHVGSSQPTGEKMLDGGYLSLEKS FDKNEISKLKKMGHKFQYDLGGFGGYQAIMIKDGVYYGASESRKDGHASGY" gene 389487..390602 /locus_tag="NT01SARS_0427" CDS 389487..390602 /locus_tag="NT01SARS_0427" /note="identified by match to protein family HMM PF00266" /codon_start=1 /transl_table=11 /product="serine--pyruvate aminotransferase" /protein_id="EJP71942.1" /translation="MKEQSFIPPSRMLMGPGPSDVSARVLEAMARPTIGHLDPQFISM MDEIKKLLQYTFITSNELTFAVSAPGMAGMECCFANLVEENDKVIICKNGFFGERMKE NVERFGGIPVMVNDDWGQKIDLNKVEECLKENPDTKIVAFVHAETSTGALSDPKSLTE LAHNYNCLSIVDTVTGLAGVPLKVDEWNIDAIYSGTQKCLSASPGLSPISFSEAAKEK IMSRKSKVKSWFLDLNLIMSYWEGEGGRSYHHTAPINALYGLHEALLILKEIGIENSW KKHMDNHLILRNGLEELGIEYLVKEEDRLPQLNSIFIPDGVDDLAARKRLLNDFNLEI GAGLGVLAGKIWRIGLMGQSSNKKNIEHCLDSIKQVI" gene complement(390599..391336) /locus_tag="NT01SARS_0426" CDS complement(390599..391336) /locus_tag="NT01SARS_0426" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71943.1" /translation="MKLIKADNYQTWYIEEKNKSIIIDPWLTNSLQPDKSFFIQRKKK IATCLTNSELKKIGAIIITAPFEDHLHVESIKFFDNKVPIYTSKIVKRFLLNRNIQNP IFILNEQGTEICGMNVKSLPTSYPYYKSTFSILIEDKNRNKIFHEGHVVNFRYIKKNK IKADVAILTADNVKLFGLISLGMISSKTLSACNLLESENLFITGNKPQDTTGLISNFL KINNYEFDEISKSIKTYANSGDCLELN" gene 391493..391972 /locus_tag="NT01SARS_0428" CDS 391493..391972 /locus_tag="NT01SARS_0428" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71944.1" /translation="MAFDSIILILQTLGPFTVLVTVYFLVTELKEQNKVARANARQNI ADSHQKLALAGMKKDIVAVKIKLRNNEELSKEENSVYLTYFSLMLRARENQHYQHKIG MLDEDEWSSMLISFKTLFKEPKHLEIWEYIKITFSEDFVELVDEQIRQSQIYGQDSA" gene 391953..393056 /locus_tag="NT01SARS_0429" CDS 391953..393056 /locus_tag="NT01SARS_0429" /note="identified by match to protein family HMM PF00563" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase with PAS/PAC sensor" /protein_id="EJP71945.1" /translation="MDKIQHKDKELDYLTRSLLHHPSPYIIYELDGSIAWANMAAIYI FELDQLNEISIKKIDDEIKNNFGDLDSIALYYDTPIEISLRKISFFMRTRVHMIPMTD DTGIMLIELLCSSRDGLNALRETIQCIENNRIELAYQKQYDLNTNKVTGVEALLRMQD GEGGYFANDRVIPLIEGEKLFSLIVLESLNQVKKFFEVKDSLGLKDTTLYLNVSAHTI MHQEFCKIFTKFVKDNDIKPNEFGLEITETAELEDIKKASESLGRLKNEGIKIALDDF GAGYASLKYIKDLPIDVVKLDRDFTSNITDEATSKLVKFVAEVCDELKLEMIGEGIET EEEKNKMIDLGCTIGQGYLMHMPSFVDEFEIEK" gene 393058..394539 /locus_tag="NT01SARS_0430" CDS 393058..394539 /locus_tag="NT01SARS_0430" /note="identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254" /codon_start=1 /transl_table=11 /product="diguanylate cyclase (GGDEF) domain protein" /protein_id="EJP71946.1" /translation="MVSKSGARDIILSQIKQDFVTPANAIFDYLDIVEKALSKLDVPS DDELDQIKSSCTKLINQYDEAFNLYTNQNSSKSQKSPEEYSELRHNLRTPLNAIIGYG EILIEDFEEDLPESRTRRIIINDLKHIIDLARSTEKAIETFVDFIRGEDVEMEDASSS NIESAEALFKSLGDIEYSISLSDEIKASDILIVDDNKTNCEVLERRLSMSGLKSRTAY DGETALAEVKKKTPDLILLDVILPDINGLELLKRFRSKHTNESLPVIMVSAFDDVDSI AKCIQLGAQDYLPKPINGTVLLAKVVSSLERKLLREREKELVNELHIQATTDQLTGIA NRRVIFDTIQNASVREKRKDYKPFMIIIFDIDFFKNVNDTYGHAGGDEILKSFATLLN TEISEPNQVGRIGGEEFLAILYIDEDTAETFIKDLINKIQKNSIEYENQTINITSSGG VAFSNESENASDLVNKADKRLYMAKKSGRNRFVLNNSEISGEK" gene 394536..394895 /locus_tag="NT01SARS_0432" CDS 394536..394895 /locus_tag="NT01SARS_0432" /note="identified by match to protein family HMM PF00072" /codon_start=1 /transl_table=11 /product="protein PilH" /protein_id="EJP71947.1" /translation="MKILYVEDNEMNRDMLSRRLSRRGYEVLLAFDGQAGLDMMKSEK PDLVLMDMGLPVVDGWDATTQAKADPEISSIPIIALTAHALESDKQKALDCGADDFDT KPVDFKRLLSKIDSFLA" gene complement(394892..397870) /locus_tag="NT01SARS_0431" CDS complement(394892..397870) /locus_tag="NT01SARS_0431" /note="identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518" /codon_start=1 /transl_table=11 /product="periplasmic sensor hybrid histidine kinase" /protein_id="EJP71948.1" /translation="MPIRLQLLLFGVVGNILVAAIFIFSFGYRENIQQESSSESLLTL YDAAWYQTYNQSFESMAKWQPTFGANASYWDPDSEIFMDEVLSSGKYTNPFLDTITSD RIGDAQYIIELFFEEELDFGYLSYVMAYFPSGQRIYCGSALDLQGIDPCSPNARPDFF VNLDSFLKDISLRPKQNIVKIEDISNNQSSTLNQGYAFPVKVEGETLSIIVLGVDIRK SLEVFEDEFEVRTAIKTPESLISLDDYFTSYGNDENNVFGTENFDKLTDQASQYRENI GARYSTQDTELGTSITLLPLSSYLSADAAQLFIFKDERENILRATNVLNITYVVAIFS VILIISLIAFVTTRTFGSITKAIEVLEGLTQGDSSQEMPERKGIFVSETDEVGHLSTA LKSYKSHLVEMETIREEQSKRRHERDEVIIEKMSKLADQLEGDARTLIVNDLEKMKKL AESSDKNSSEEASVELMLIAFSRMSDEVNALIDARTHEMETARDEARDASDQKTKFFA NMSHELRTPLNAILGYGEMLYEDCEDLGYEDLLPDLKKITSAGSHLLSLINNILDLSK IEAGKMELFVTNFEIENMIDTIKDVSAPLASKNDNQFVINFDGAMGAMSQDETKLRQC LTNFLSNAFKFTKNGTVTLDIKSEEVNSVENINFSVTDTGAGMSPEGVAKVFEEYTQA ERSTSANYGGTGLGLPISKKFAELMGGDVTVTSEEGVGSVFSIIVPRECPEYEDEVDQ GLINIDSDENLVVLVDDDTAMHGLIKRTISKLNLTLLGATNGEKGMDLIREVKPKLIL LDVLMPGRDGWSILKECKTDNELKDIPVIMVSQLDQSNMAESLGANEYMTKPIDRELF LNTVKRILGSTTKDKKVLVIDDDKDVRDLMTRLLDDIGVRPIDARDGKEGLERTKDNP SLIVLDLEMPRMDGFEFLDNYIKDTPEDNRAPVLVYSGKDLTDVQSELLKDKVVGLVK KDESSMENLSKTISGLIKES" gene complement(397886..398251) /locus_tag="NT01SARS_0433" CDS complement(397886..398251) /locus_tag="NT01SARS_0433" /note="identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352" /codon_start=1 /transl_table=11 /product="protein TonB" /protein_id="EJP71949.1" /translation="MKKFKYLFLSAFLIVSFESFSAEYGYVDDETRIKLVRMNQLMPE YPRQAIRLGIEGSVVLKFNVDEYGAVLDPYVVESNPGGIFDRASIKAVRKLIYEPPLF EEKAVPVRNVQLTVVFKLQ" gene 398411..398504 /locus_tag="NT01SARS_0434" tRNA 398411..398504 /locus_tag="NT01SARS_0434" /product="tRNA-Ser" gene 398511..398927 /locus_tag="NT01SARS_0435" CDS 398511..398927 /locus_tag="NT01SARS_0435" /note="identified by match to protein family HMM PF03061" /codon_start=1 /transl_table=11 /product="thioesterase family protein" /protein_id="EJP71950.1" /translation="MSVDYKKFFREIPEFLKVLGFENGYYDENNHEWVTEFLPSEDLT HSNGSIVQGGFVTGMLDAAMAQCIMFKSNGEDLPLTLDIDVKFLNSCIPDHKVTSRAK IIKQGKSIVFTSANLFQKDDLIATASASNKIIKFKL" gene 398952..399524 /locus_tag="NT01SARS_0436" CDS 398952..399524 /locus_tag="NT01SARS_0436" /codon_start=1 /transl_table=11 /product="metal-dependent phosphohydrolase" /protein_id="EJP71951.1" /translation="MTEKRAKFTQMKDGDAEDYSIIAASNAKDYDHLADKVLTHLKML ENDYGGFQVDRLTHSLQTATRAYRDGRDDEYVVCALIHDIGDNLAPANHAEFAATILQ PFVSEENYWIVKHHGIFQGYYFFEFLGLDKNMRDKFIKSPYFESCKEFCEKYDQSSFD PEYDTLDLEFFIPMVKELFKKPKRSIYLQS" gene 399525..400619 /locus_tag="NT01SARS_0437" CDS 399525..400619 /locus_tag="NT01SARS_0437" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71952.1" /translation="MTDYHFKKFLDQVTPLENFDDEIPPEAPNYADLVYWAATPDQEA QQFFIPDDSFKVNKKGNPVDVFYIHPTGFYEKKWNSNMDRKRSAFERTEIMLGNQASV FNESCNIYAPEYRQATYFSFFDKNKNGIKALDLAYSDIENAFDYFIEHFNDDKPFIIA GHSQGALHTHRLIKQRIENSSLQKRFICAYAIGYMIPEKSFNDLFPTIKKSESNIDTN CLVTWSTVVEGFQRSREKTPFWTPAGWTAEPMYQKIVSTNPFSWTNDSDWHISSINKS IINKSKDYNFTDQISTEHTGAKKSIGLTRIQDFSAAVNVDSGLVETKGPLIDNIKKMK FFSGDLHSFDMMLFWGTLRQNVKDRIKNFH" gene 400645..401586 /locus_tag="NT01SARS_0438" CDS 400645..401586 /locus_tag="NT01SARS_0438" /note="identified by match to protein family HMM PF00561" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="EJP71953.1" /translation="MFTNSNLFSYDEGIAKSGNIEIYYRDYGPADGEPILLVQGIGGQ LINWPQHLIEFLIENNFRPIVYDNRDTGLSSRIQNDSFNKDNVNKTIIRNYIRYYLRL PIKSEYTIDDMADDGVSVLDHLNIENAHILGISMGGMIAQIMASSYPEKTKTFTLIAS TASTPSPFNGPSKDVRRLFIERTKNVDATIEERVNRTKKLFKLIGYQGIDLDTQEFSD NVKLSIERGGVDDTGFGRQLTAILGSKNRIEKVRSISAPTLIIHGKEDPLIGVKNAYR SNKLIKGSKLVIIDNMRHLIEPPVFDQFKSDLLAHLK" gene 401591..402976 /locus_tag="NT01SARS_0439" CDS 401591..402976 /locus_tag="NT01SARS_0439" /codon_start=1 /transl_table=11 /product="transporter, major facilitator family" /protein_id="EJP71954.1" /translation="MLTRSFKINYSIGSIPNGIKTDTFTFFLLFFYSNIIGLNPGLAG TAIFIALCVDAVTDPLMGTISDRTNTTLGRRHPFMFISFIPMSLGYILLFAPRQDWDM SQNDLFVWMTIFTIITRIGMTLFDIPHRAFGGEVTKNYEDRTLLMSWREMVAWIAGLS NAFLGYGVFFASTSEYPQGQLNPDAWFPFAVTGAIIMIITVLYCSYTTKDKAKNLSKW SGSVSLGSILKELKIALGNKSFMIFFFGNLCLSLAWGLANTLTLFVNTYFWDFEATQI KYFLPVYFVATIFAFLLTPKMVKLFDKKYIVLICIGMVGLLSPAAFIFYNLGLTPEKG SYELVFFISTFLLVLITFNIMGIMVRDSMVGDIADEVELQSGRRQEGILFAAVGFMQK LNAGLGTFFAGQVLNFINFDRLNHTAEQAYTLAFVQGPVTTLLMILPIIIFSFYSLSA KKHQQILREIG" gene complement(402980..404404) /locus_tag="NT01SARS_0440" CDS complement(402980..404404) /locus_tag="NT01SARS_0440" /codon_start=1 /transl_table=11 /product="putative viral A-type inclusion protein" /protein_id="EJP71955.1" /translation="METSKDLFRELEKAEQLFSNGSIRNGQKVLREVLKASKSLNKVS NKLRHKINYVLNESKYFDEMSSFATNPKRDNLINEVNKLVSNPIKEPKKHAHAIHNLQ RQWQLLDISGKSASKNQWNKFNDLSNKAWESCKDYFEEIKQIKINNAENRKNIIFKIN NYVEEHQKKWPTIISLSKFLRSTYDDWQKFAPVLDSDLDKLKKQFFDSRQPIINEIKT QEGQNKKLKEDLIKKVDEIDNENNDVAIQQFKKIKNEWSNIGPTGKKYEQKLWNKFNA CADKLFIEKNKKIEEEKLKLKNLNDELLKGDIDINTVIKELPTFELTKRSEEYKTISK SIRKAKEDQFIKIKGKKIDAYKNIFDVLNKQADIDKAPNIFSKEINQSFQNKKTDKNM LLYQCIKLEVLAGIDSLKKDQKIKNQVQLELLSNKFNKSSELKINDVDSVLRTFIENY SMHDSNDDIDKLWKRIIKCFDKLI" gene 404438..405430 /gene="trpS" /locus_tag="NT01SARS_0441" CDS 404438..405430 /gene="trpS" /locus_tag="NT01SARS_0441" /EC_number="6.1.1.2" /note="identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233" /codon_start=1 /transl_table=11 /product="tryptophan--tRNA ligase" /protein_id="EJP71956.1" /translation="MKKRILTGITTTGTPHIGNYIGAIRPALEMAKDSSESFFFLADY HSIIKNNNSEDIKNSVKNIALAWLACGLNPNKTIFYKQSDVPEILELTWILNCVTAKG LMNRAHAYKAAISLNKEDPDKGINMGLFSYPVLMSADILMFDSTHVPVGSDQIQHLEM TRDIAQRFNHLYKPILTIPEPMIQDSENTVPGLDGRKMSKSYNNVIPLLGSEKELRKS VMKIITNSLEPGEPKDINDCTVFALYEYFASEGQIDDLKKSYKDGISWGDAKEILFKL INEELNPIRAKFEELKNNNDYLNDVLHEGAKKARVLAQEKILAIKEIIGISKIN" gene complement(405486..405851) /locus_tag="NT01SARS_0442" CDS complement(405486..405851) /locus_tag="NT01SARS_0442" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71957.1" /translation="MTVRLSFEVISAIYAKDAGLVADPTRPFINLPSTRAGNSKVTLS KFFCAKKRGVINAIKDIEYPTSPRIAIFLLPYLSLVLPQNALVVAHAKADIAKIEEVC ISLKPKSLARGGTRTKTND" gene 405904..406620 /locus_tag="NT01SARS_0443" CDS 405904..406620 /locus_tag="NT01SARS_0443" /codon_start=1 /transl_table=11 /product="transporter, major facilitator family" /protein_id="EJP71958.1" /translation="MGGFLFLISNETPFYVFSMLAFIAAIGIYRKLDSVTKKKNTVKK LNKINWYSSTIWPFLAFAAVLSLCQASLLQSIGFYITDLYSDFDNLPTLISMTFALLS ISTIVSQYIFTDAFPMNNFNLLLFGTLLLIFSYFTMAFYQTISVYYLSIIVLGFGFGM TRPALASSLSLAQSPENQGSAAGYLGSVIPIGHMTTPFIAMPIYSINPAYLYYFSSVL CITLIIFIISQPILKKSGSL" gene 406617..407615 /gene="hemH" /locus_tag="NT01SARS_0444" CDS 406617..407615 /gene="hemH" /locus_tag="NT01SARS_0444" /EC_number="4.99.1.1" /note="identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109" /codon_start=1 /transl_table=11 /product="ferrochelatase" /protein_id="EJP71959.1" /translation="MKKTLLIVNLGTPDKPNYFSVFKYLRQFLMDGRVINVNPIIRFF LVNLIIVPFRSFSSSKIYRQVWDKETGSPLLYNTKKLAEKLNSKLPDYDVEFAMRYQN PSLEKVINKILLKNPDEIIILPLFPHYAAATTGSVYEEVSRIISKKWVVPKIKFISQF YDNEKFINAWIEKANKFDINAYDKIIFSYHGIPNSHVDNVYEDSVCSDHDCEIKITEK NKFCYKATTYETTKILASKLNIKDDNYIVTFQSRLTNKWLTPFTDEVLESLAKEGKKN ILIFSPAFTADCLETIIELGDEYKELFIEAGGDNLDYVESLNYSDTWADAIIDIIK" gene 407627..408499 /locus_tag="NT01SARS_0445" CDS 407627..408499 /locus_tag="NT01SARS_0445" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="2,4-dienoyl-CoA reductase" /protein_id="EJP71960.1" /translation="MFTKDLLKNKRILITGGGTGLGKEMASHFAEYGADIYICGRRDN VLQDTAEEIKEKFKVNVHTQTLDIRASKDVDDYVQNIFDEGPLDGLVNNAAGNFISPT KDLSHKGFDAIANIVFHGTFYMTHSVGKRWIEQGVKGSIINILTTWIWTGSPYVVPSA MSKSGIHAMTQSLAAEWGKYGIKINGIAPGPFPTKGAWDRLMPGGGDQKSYTSTVPLG RVGEMSELQNLATFLMSDGCDYLTGQTIGLDGGQYLTGGGTFSQLDALSDDDWNNMRE LIRSANNKDKADRS" gene 408509..409936 /gene="calB" /locus_tag="NT01SARS_0446" CDS 408509..409936 /gene="calB" /locus_tag="NT01SARS_0446" /EC_number="1.2.1.68" /note="identified by match to protein family HMM PF00171" /codon_start=1 /transl_table=11 /product="coniferyl-aldehyde dehydrogenase" /protein_id="EJP71961.1" /translation="MNTYEEMNNVLKDQKEYFIKNGSPSVDLRIDRLQRLKSLIMDNR YDFVDALNADFGNRSKNASMLSDVYGIMPAINLAIKNVKKWNKIEKKSSNFPFGLLGA KSYIKYEPLGTVGMISPWNFPVNLAFVPLVSIFAAGNQVMHKPSEHTPITSSLLKDLC DKAYDQNEFATFLGGPDVGEAFTKLNFDHLLYTGGGSVAKHVMSAASQNLVPCTLELG GKSPVVVGKSADLKTTAKRIMFGKTLNAGQICLAPDYVVVHKDQKDDFINETKNAVSD YFPDLKDNDDYTSIINQNHYDRLQDLLNDAVEKGATIDEINPANEDFSQQEHFKIPPT IVSNTTDDMKIMQEEIFGPLLPVVEYDEIDEATKLINSKDRPLGLYYFGNDQSEQDNI LNKTSSGGVTVNNVISHLQQNDLSFGGVGPSGMGRYKSFEGFKNFSNPRAYYKDVSFK LDKVFDAVRPPYKENIEKVLKQLMK" gene 409941..411170 /locus_tag="NT01SARS_0447" CDS 409941..411170 /locus_tag="NT01SARS_0447" /note="identified by match to protein family HMM PF02687" /codon_start=1 /transl_table=11 /product="LolC/E family lipoprotein releasing system, transmembrane protein" /protein_id="EJP71962.1" /translation="MSSISFNLGYRYLRSKKGGIFSFTTILAILGLSIGVASLIIVTS VMNGFQKELENRILGVIPHAIVYNDDSIENYEELIEKINANNDVYESSPYIEIQALIS SSSENQPVSLIGIEPDKEKEISILPQYMIIGDFENLNNKNSVIIGSSLAANLGAYVGD NIVITTPDIKSTIIGSYPLSVTLEIVGIYELRTEIDQYLVLTSHKTAQKLKKFSTDQT ESIRIKTTDLFKADLIGSNIALELGNSFYISSWKDTHGTLFEAIKFEKLLISLMLFLI VAVASILVLSTIVMTVKSKEREVAILRTLGASSNQLTLIFFTQGILLSVIGIFIGVMI GYLFTININNIINILEAMLGRNLLEAYFINYFPYFIDHKQILFICLISLILSISASFL PSLRATKLNPVEILRHE" gene 411163..411843 /gene="lolD" /locus_tag="NT01SARS_0448" CDS 411163..411843 /gene="lolD" /locus_tag="NT01SARS_0448" /note="identified by match to protein family HMM PF00005" /codon_start=1 /transl_table=11 /product="lipoprotein ABC transporter, ATP-binding protein" /protein_id="EJP71963.1" /translation="MSKLECKDLSKSFSISGDTIEVINNINLSITEGDKVAITGKSGA GKSTLLQILASLDSPTSGRVYLDKTDFASLSNDGLSQIRLHNFGFVYQFHHLLDDLSV EENISIPLSLKNELNSESKILVNKIMKELDIYERKNHLPWKLSGGEKQRVAIARAIVT KPKFLFLDEPTGNLDRKNASIIQSLIFEMSDKYGIALISATHDNDFISSFENIYEISG TKLNKIYE" gene 411836..412435 /locus_tag="NT01SARS_0449" CDS 411836..412435 /locus_tag="NT01SARS_0449" /note="identified by match to protein family HMM PF01618" /codon_start=1 /transl_table=11 /product="MotA/TolQ/ExbB proton channel" /protein_id="EJP71964.1" /translation="MNEFITAGGIFMWPLLACSVLIIAFSIERSWFLQKRLICPDGLS NQIKTLMDNDMIDKRHAEEISNLSSLGFLLINCIKYKNLPRENLESKIEEKATEVQYS LERNLTMLGTTATISPLIGLLGTVVGMITAFTGLTETSGANPDLLAAGISQALITTAF GLLIAVPGLVLHKYFEHKIKYLLISLQTEVSDFIDIINK" gene 412432..412836 /locus_tag="NT01SARS_0450" CDS 412432..412836 /locus_tag="NT01SARS_0450" /note="identified by match to protein family HMM PF02472" /codon_start=1 /transl_table=11 /product="biopolymer ExbD/TolR family transporter" /protein_id="EJP71965.1" /translation="MKFLNQKDSNFSIEITPLIDIVFLLVIFFVVTSKVGDSQFLNLD LPKTESFQYNTVQTSNEIMIYEDGSIYINENYFNINDLNDIEDAIFRLENAGESLILS AHSNSLHVWVITIMDILNKYGFNEVQIRTIER" gene 412833..415592 /locus_tag="NT01SARS_0451" CDS 412833..415592 /locus_tag="NT01SARS_0451" /note="identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02606; match to protein family HMM TIGR00682; match to protein family HMM TIGR02203" /codon_start=1 /transl_table=11 /product="lipid A export ATP-binding/permease protein MsbA" /protein_id="EJP71966.1" /translation="MKEGSLKRLLRYTFRYKWSFLISVFGFISFAFADIAAVEWIRRI IGYINSEEQNFSSLLALSLILIALARGIGFFVGNYFMSKVGFGIVHDLREELFEKLHE LPKSYFDSNQSGQLINRITFTTTQVSGAASNAVKTLIREGFLLIGLFAYLMFLNFKLT LLLIVTAPLIALIVYIAGKRLKKLAAKIQTAMGDVTHIASEAVDGHVEIKSFNAQEYE NSRFLEANTSNKNQNLKLEATGNLATPIIQVLVSISLSIVAYFALGSQLGISLDAETF VAFFTAAGLMAKPIRQLSNINIVVQKGLAAANEIFEQLDQNIEKDNGDIETEIEGTIE FKDVNFSYDTGNQILSNINFCINKNETVAIVGKSGSGKSTIANLIPRFYNHTSGDILI DGISVSNFSLKHLRSSISIVNQSPSLFNDTISKNIAYGDDEVNVDKLFESAKLAGCME FIENLPEGFESEIGDDGVLLSGGQRQRLAIARAFYKDSPIIILDEATSALDTESELIV QEALEKLITNRTTIVIAHRLSTIENASNIIVLDNGIISESGTHEELIKNESIYSSLYK NKFEDSVKIKSSSTRSVQLFLPEYEDESSRSFVVDSWYNKSLWLYLLYPFSLLFSYLT SRRRRKFLKNKIKSFSSNLPVIVVGNLTIGGTGKTPLVKYIASELIKRGYKPGIVSRG YGGNFKETLKVEQDTPVKQTGDEAQILSKLNIPFYIDKNRVRAVETISKNHDCDVIIS DDGLQHYNMKRDIEIAVIDGKRRFGNKLTFPAGPLRESIKRLNTVDFVVNNSGPSEEN EFLMNISPSEFVHLKSGKTYGIEDWPMHKQIHAVAGLGNPSRFFDLLEKLGFEIIRHP FPDHHNFDSSDLYYLDHLPIVMTEKDASKCKEFDNNKIWYLKIEADVNNKFIDQLENK LKTII" gene 415594..416319 /gene="kdsB" /locus_tag="NT01SARS_0452" CDS 415594..416319 /gene="kdsB" /locus_tag="NT01SARS_0452" /EC_number="2.7.7.38" /note="identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonate cytidylyltransferase" /protein_id="EJP71967.1" /translation="MSDIFILIPSRIGSTRLENKPLQNIEGKSLIQRVFENALSITSN VYVATDSNKIKDNLSNVTNNIIMTSSEHISGTDRVYEASTKLNLKDSDLIINLQGDEP FLPKDAVMKMINDYKKNDCDVITLSSDIHSKNDLLDENCVKVQINKDSYANDFYRISD GNNLKKHIGIYGYSLKVLRKIINFDPSERELTKKLEQLRFLDNGLNIYVSYYDKNIPH GIDTQEDLINARKHIKDATKRES" gene 416297..417298 /gene="murB" /locus_tag="NT01SARS_0453" CDS 416297..417298 /gene="murB" /locus_tag="NT01SARS_0453" /EC_number="1.1.1.158" /note="identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate dehydrogenase" /protein_id="EJP71968.1" /translation="MLLKENHKISNSLKIDSTARFYIEVIKQDELIDLSKFINKNEIK YLVLGEGTNLVPPDFFDGIVIKPNFNDVLYDSNNKIINVGASVNWHKLVNICIEKNIY GFENLSLIPGTVGAAPIQNIGAYGQEVSNLIDKINCFDIEKGEFISLNNSSCKFKYRN SIFKNNSLLIISVDFKTDCKKEFNIEYNSIINHMDKIGFKKTNLSLETLSNLICDIRN KTLPDPNIIPNAGSFFKNAEVKISEIDDSEFSLDELIIWDIGNNKVKVGSARLIELVK DRIPKSKNVEIYKNHALVLVTNAYATQAEILDYANAIIKIVKKVFNIELQIEPTLVE" gene 417300..417911 /locus_tag="NT01SARS_0454" CDS 417300..417911 /locus_tag="NT01SARS_0454" /note="identified by match to protein family HMM PF01810" /codon_start=1 /transl_table=11 /product="lysine exporter protein" /protein_id="EJP71969.1" /translation="MFLWSALAHLIALTSPGPDTAIVLRQVSLHGRIEGFKASLGIGI GIYIHCILAVNGISIIIVSNELYKFLISLVGGTYIMYLGISMLTSETNNVSKENISVQ TNKNSFLAGLVTNIFNVKAFLFFVSLFTILVDSINDVLFYIYPLYFAITSCLWFLFLS YVTTISKNKNFNVYSNKYISYFMSLVLCLISLLILIRAFYEYF" gene 417898..418431 /locus_tag="NT01SARS_0455" CDS 417898..418431 /locus_tag="NT01SARS_0455" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71970.1" /translation="MNISKITESLKGHDQRFPPVEKWNPELCDGHEFLIDREGNWFYD GSAIKNIKLMNLFASVLKKEGDSYFLVTPIEKIFVKTDLAPYKIIDFEIVDDNIKLIT NLNYDFFLDEDHVSRLVKYEESYVPLVIVRNNIEGFINRNTYYKLVDLAISQNHKEDN YLYLRSFNINHVIGKIA" gene complement(418548..420341) /locus_tag="NT01SARS_0456" CDS complement(418548..420341) /locus_tag="NT01SARS_0456" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71971.1" /translation="MKRNLILAISPLLLTFSCASIETQDENNTTSSIIKIDENEKFLN YLNDDWQKTLDDNPLFASYTGDKRQNNKISSNSIENFEKSKKSDERSLEKLKSIDESK LSEDNKLNYKLKEFDLLSSIQTKEFPTYYLRLNQRGGIQSFYETGNRLVYSSKQDYFD WLERLGQFEENINNAYEINKRGLSEGYTQPKLVTKGVVAQLESIINSEIQSNPYMKVF IEADENLLTEDEKAELINSAEILIENKINPAYKKLHDFLKNDYLINSRDSIGIKDIPN GKEYYEFLARFYTTTDLTPEEIHNIGLQEIQRIRSEMEEIIRQVNWDGDFGSFLNYLR TSPRFYYDNGEDLFNAYLIMSKTIDPLLPKIFKEFPRAPYGVKPIPAESAPFTTTAYY NSPSPGRPGYFYANLYKPESRPKYEIPVLTVHEAVPGHHFQISIAQELENVPTFRKYQ GITAFVEGWGLYSEELGEYINIYDDPYDKFGQLTYDMWRAIRLVVDTGMHYFDWSRQD AINLFLENSAKSQLDIENEVDRYIAWPGQALAYKIGQLKILELRNKSEELLGDKYDIK DFHYEVLKRGSLPLDLLEFYIDKWIEETINS" gene complement(420341..421966) /gene="etfdh" /locus_tag="NT01SARS_0457" CDS complement(420341..421966) /gene="etfdh" /locus_tag="NT01SARS_0457" /EC_number="1.5.5.1" /note="identified by match to protein family HMM PF01266; match to protein family HMM PF05187" /codon_start=1 /transl_table=11 /product="electron-transferring-flavoprotein dehydrogenase" /protein_id="EJP71972.1" /translation="MHRETMEYDVVVVGGGPSGLATAIKFAQLNNENGTNYSICLLEK GSEIGAHILSGNVFQPNALDELLPNWKELGAPLNTPVKKDKLLFLLEKIGIPVPSFLM PPMNNHGNYVISLGNLCRWLGEQAESLGVEVFPGFPASQLIIENDKVVGVQTGDMGIS ESGELKPGHEPGINIRAKYTILGEGCRGHLGKQVIHKFNLSENKDPQHYGIGFKEVWK IKPENHDEGLVIHTNGWPTPFDTPSGSYLYHGENNEVYLGYVIPLDYKNPHLSPFDEF QKWKTHPAIKKYLHEGERLTYGARALIKGGLQSLPKMEFPGGLLIGCNAGTLVFSKIK GSHTAMKSGEIAGQHIYEELQGTSDQSYDSRIKNSWVYSELYKSRNFGPFFHKFGALI GAAFNAIDQFIFRGKLPFTLNHATPDYACLKKSDEMPKIDYPKPDGIYSFDKLSSVYL SNTNHEEDQPCHLQLKDPTIPISVNLPMYDEPAQRYCPAGVYEVVEKDNEKKFVINAQ NCVHCKTCDIKDPSQNINWVTPEGPGGPNYPNM" gene 422128..422880 /locus_tag="NT01SARS_0458" CDS 422128..422880 /locus_tag="NT01SARS_0458" /note="identified by match to protein family HMM PF01012" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit beta" /protein_id="EJP71973.1" /translation="MKILVPIKRVVDYNVKVRPLSDSSDVDLNNVKMAVNPFCEIALE EAVRLKESGQATEVVAVSVGKSDSQEQLRTALALGADRATLVETDSLLEPLAISKVLK NIVDDEKPDLIILGKQAIDGDNNQTGQMLAALLDYPQATNASEVKLESSFVEVTREID GGLQTLKLNIPAIITTDLRLNEPRYASLPNIMKAKKKELNVIAVGDTGVDVSSRTETL SVELPPTREAGIMVETVDELMDKLKNEAKVIQ" gene 422877..423806 /locus_tag="NT01SARS_0459" CDS 422877..423806 /locus_tag="NT01SARS_0459" /note="identified by match to protein family HMM PF00766; match to protein family HMM PF01012" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit alpha" /protein_id="EJP71974.1" /translation="MSILVIAEHDNQKLKGSTLNTVAAASKLTGEVSILIAGSGIDAV VSESQTLNEISKIVTCDNNVYENFIAEDLSSLVVAISDGYTHILAPSSTFGKNLMPRV AAKLDTQQISDIISVESDDTFKRPIYAGSCIATVKSNDAVKVITVRSTAFDPVGTDNN GVEVVSVDASDSLGISSFVSEELAQSDRPELTAANIVISGGRGMQSGDNFHLLDSIAD KLGAAVGASRAAVDAGFVPNDYQVGQTGKIVAPDLYIAVGISGAIQHLAGMKDSKVIV AINKDEDAPIFQVADYGLVGDLFNVLPEMDSKI" gene 423807..424754 /locus_tag="NT01SARS_0461" CDS 423807..424754 /locus_tag="NT01SARS_0461" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71975.1" /translation="MNNIFVKENAFIITLTVSVLFLLIFYILSALQLIQSTESLAFIG EASRWCERVSDGAFREPVNTLSNLGFMFAGLFILYKLSNEVSFNEFSGLNKITILYGV AVVYLGPGSMMMHGTNTEWGGWADNLSMVMYIILPWLYNCYKMSNWSVNTLMKIYFAT IIVYAFMRAMFGYEMGIGLDLFGVSIGLWVISEFLYRFWSPTMRILSGFVGFLVLMLF GTMPAEVFNDFNEYWWIIFFWLPGLLANKKPLGIRTYRWYFAGMIAYMSAFAIWLTGV PDSPSCDPDSMFQAHGYWHLLTAIATIFFFYHYRSEKLI" gene complement(424746..425849) /locus_tag="NT01SARS_0460" CDS complement(424746..425849) /locus_tag="NT01SARS_0460" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71976.1" /translation="MSEPIKVFGNVGSPYTQKILSLLRYRNIPYTVSWGDVVHNLSLL KIDPPKPVLLPTLVFKDKNNLNVCKTDTTPIIRELEKLYKPKSVIPPSPVLAFLNYLL EDFADEWTTKYMFHYRWYFDEDAENAKKMLVLQHKLNIDNESLKLFGDVIADRQINRL WVVGSNDDTAELIDKSYKRYLKLLEKHLSVQSFMFGERPSSSDFGLYGQLTQLVGFDP TPSNIAYKESPRTISWVNVMSDLSGLHNMGGVGEFFGIKNEKVNSKINYFKDNEIGWI KLNESSETLKEIFHEVGKVYIPCLIANSEAYLNGDEIWETEIDGSKWKQKTFPYQVKC LSWIKDEFNSLCGDDKKQVMEFLKGTGCESILD" gene complement(425856..426491) /locus_tag="NT01SARS_0462" CDS complement(425856..426491) /locus_tag="NT01SARS_0462" /note="identified by match to protein family HMM PF00043; match to protein family HMM PF02798" /codon_start=1 /transl_table=11 /product="glutathione S-transferase domain protein" /protein_id="EJP71977.1" /translation="MIKLYLTPSTRAGRVAWLLEELEMEYELEVLPFTKEGLKSPEHR SRHALGRVPVIEDGDVSIFESGAIIQYILDKYDDKGLKPDVNSSEYPYYLQWFHYCEG MVMPPMNQIVVQTVLLPPDRRDETVLNQAMNLLSKSLSPVNSFLEGKDYLIGNFSAAD CMLGHSCFMANRFGTVSDEMGNIKNYVKNIESRPAFQKAIMLGTENADPLG" gene complement(426501..427187) /locus_tag="NT01SARS_0463" CDS complement(426501..427187) /locus_tag="NT01SARS_0463" /note="identified by match to protein family HMM PF02798" /codon_start=1 /transl_table=11 /product="glutathione S-transferase" /protein_id="EJP71978.1" /translation="MIELYTAPTPNGHKVSCTLEALEMDYKAILVNLSEGEQKKPDFL KISPNGRIPAIIDTSNNLSIFESGAIMIYLADKAEKLISKDEAKRAKVMEWLMFQMGG VGPMMGQANVFFRYFPEKIQPAIDRYQNESRRLFEVLDSHLEKNEWLAEDYSIADIAN WCWVRTHKWSGVSTDGLEHLERWKNAMYEQPGMLKGIKVPIEINIDKRLNDEEQTKAF IKNAQKMVKK" gene complement(427190..428251) /locus_tag="NT01SARS_0464" CDS complement(427190..428251) /locus_tag="NT01SARS_0464" /note="identified by match to protein family HMM PF00561" /codon_start=1 /transl_table=11 /product="haloalkane dehalogenase" /protein_id="EJP71979.1" /translation="MKVLRTPDKYFKNIKGYPFDPIYTDIFADDGTEIRIHHIDEGPS DGPILLAMHGQPVWSYLYSKMIPILNDAGIRVIAPDLVGYGKSDKPASREDYSYQNQV NWMNEWLIKNDLNNLIFFGQDWGGLIGLRMIADNPDRFIKVSMGNTGLPYVPNTSKEV IDKVKEFRKSKIKLTPMSMSKEVRKMDSRETHPALKFMYWQKFCWDTKNLPVGLLNSS MMENKPAKEIRNHYIFHSLGLSKISPYMSDLMRAYEAPFPSPKYKMACRAMPSHVPLI PDQSLDAQKRARDFFNKTDKPFLSVFAGNDPVTNGMEKDVLNMVPNAISAANIGGGHF FQWTKPKELSKVLIDFINK" gene complement(428248..428721) /locus_tag="NT01SARS_0465" CDS complement(428248..428721) /locus_tag="NT01SARS_0465" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="2-hydroxychromene-2-carboxylate dehydrogenase" /protein_id="EJP71980.1" /translation="MRDFKKKAKKLDMPLIVPIKPDPIRQNTLTGKIADHQPYIFDVC HMGQLMCNRGKGIEFAYELSTLIWSVKNWNTDDKLKDLLLEFGEDLDEVRESVKSNEK SLIEEIEMNQLDQKEAGHHGVPLNVYKGKYYFGQDDPFEELINELINDEVIKDFK" assembly_gap 428743..428762 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 429081..430010 /locus_tag="NT01SARS_0466" CDS 429081..430010 /locus_tag="NT01SARS_0466" /note="identified by match to protein family HMM PF01145" /codon_start=1 /transl_table=11 /product="band 7 protein" /protein_id="EJP71981.1" /translation="MGIEASNIVLVVLVVLIIYVVFLSIKIVPQSKVFVIERFGKFTR ILESGLSLIVPFVDRVAFKVDILERQLPPFKMSVITEDNVEVELVATVFFRVLDAAKS VYRIRNIDLAIENTAISVVRSAAGKLELDDLQSSREAMNQEIAARLSKAAEVWGVEVT RTEILDVLVDEKTKESQRQQLNAERERRAAIARAEGDKRSVELKADAELYEAKKQAEA VKVEADAEAYAVKIKAEADAKQTELIAEAINNDGQSAINYEIMKRQVEGLSDIASSNQ TKTLFIPSDITKALGTLELFLDGIVNKEAKNDN" gene 430000..430290 /locus_tag="NT01SARS_0467" CDS 430000..430290 /locus_tag="NT01SARS_0467" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71982.1" /translation="MIIETLLYSGNVWLIIGLILAILELTNGTLIVFLPTGLSGLLTG LVLKLQENETLSILLKDWAITLTFWAIISLLLSLALNFLVKKRMTSKDINTY" gene complement(430297..430797) /locus_tag="NT01SARS_0468" CDS complement(430297..430797) /locus_tag="NT01SARS_0468" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D" /protein_id="EJP71983.1" /translation="MKLLKRKKIQNASQFQWWESYENAGITFTFTPVKHWSKRGLFDR NKSLWGGWFVQFNDYAIYHAGDTGYSNDFIKTKEVLGSPKYALIPIGAYDPEWFMASS HVNPEDAVKIMLDLEADYAFGMHWGTFVLTDEDTLEPPIRLQAATQKNKIEFKSLIPG DLINLK" gene complement(430944..431507) /locus_tag="NT01SARS_0469" CDS complement(430944..431507) /locus_tag="NT01SARS_0469" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01180" /codon_start=1 /transl_table=11 /product="dihydroorotate oxidase" /protein_id="EJP71984.1" /translation="MRFFLKIFRLLPPEIAHKIALDLLNLSHKLGILSFIFRKPKDEN CSFAGMNLSNRLGTAAGLDKNGDYIDCLGALGFGFLEVGTVTPMPQYGNPKPRVFRNF DDNSIINRLGFNNRGVDRLVKNLKSRSFKGIVGVNVGANKNSIDEERINDYLHCIXXX XXXXXXXXXXXXXXIELHHFVILVLKD" assembly_gap 430987..431036 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(431504..432364) /gene="galU" /locus_tag="NT01SARS_0470" CDS complement(431504..432364) /gene="galU" /locus_tag="NT01SARS_0470" /EC_number="2.7.7.9" /note="identified by match to protein family HMM PF00483" /codon_start=1 /transl_table=11 /product="UTP--glucose-1-phosphate uridylyltransferase 2" /protein_id="EJP71985.1" /translation="MIKKAVLPVAGLGTRFLPASKATPKEMLPIIDKPLVQYAVEEAV DIGIDEIVFIISEDKYSIERHFQKNTNIEKRLIENGKTEFIEKLNPKIFSNVKFHYVN QDEQNGLGHAVLLAEPIIAGDPFALLLPDELFFARESCLNQISEIFNKTNSSTIAVTK VDEKNIHKYGVIKPGKVENNAILLEDIVEKPLKEDAPSDIAVSGRYILTPTIFNHLKK IGPGKSGEIQITDAIKTLINEENVYAKIYEGEKFDCGSKLGFVHATIALALKDPSISE NIKKIIKEIV" gene complement(432367..432852) /locus_tag="NT01SARS_0471" CDS complement(432367..432852) /locus_tag="NT01SARS_0471" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01694" /codon_start=1 /transl_table=11 /product="rhomboid protease GlpG" /protein_id="EJP71986.1" /translation="MFSFEQTFFENRQWWRLITPTFIHFSFAHLAFNCLWIYILGEKI EKFDGILVFFSLVIFSAIFSNSLQFFWSNTSLFGGLSGVIYALIGFCMVNEMDSTYGR YDIPPGLYLFMIIWLVLGFLGIVEMFGFGAVANFAHLGGLISGIIFAVLYKLFFMNWS N" gene 432930..433106 /locus_tag="NT01SARS_0472" CDS 432930..433106 /locus_tag="NT01SARS_0472" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71987.1" /translation="MKQAQXXXXXXXXXXXXXXXXXNVSSLSKKGSELIIYFLNQYLK FCLEPNESLLILDQ" assembly_gap 432945..432994 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(433157..433558) /locus_tag="NT01SARS_0473" CDS complement(433157..433558) /locus_tag="NT01SARS_0473" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71988.1" /translation="MKVENKVMPSEAQINGFLENSEIGPISMVNLLKYKDKAKYEDGR DTNLTGEEAYGLYAAEVINFVEKYGGEFVFAGKVSRLMLGEVEDLWDAVAIAKYPSRK AMFDMTMDPEYQKIHVHRDAGLEGQLNIETI" gene 433626..434750 /locus_tag="NT01SARS_0474" CDS 433626..434750 /locus_tag="NT01SARS_0474" /note="identified by match to protein family HMM PF00561" /codon_start=1 /transl_table=11 /product="haloalkane dehalogenase" /protein_id="EJP71989.1" /translation="MNKVFSILFFILIISIGLFQYIRNSEPSINYERFNLVSPGILRT PDERFEDLKDYPFIPNYLTIGDTRIHYIDEGPKDGQIVYLLHGEPTWSYLFRKMIPTL VNEGFRVIAPDMVGFGKSDKYISTDDYSHQMHVEKMTQLVVELDLKNITAHFHDWGGP VGFRVLAEEPNRFDRVIATNTSLPATGRGFMNDLRSYLLWPIFKFTIWFQGPATWEEF IGGDGFTNWIRYSTYTDNIDIAGIMQILGSVSEEESIAYEAPYPNATYKAGAQIFPYL IPSEIRKNEMAYREVLEKWDKPFLIANSDNDPVTGNNPEIVELLKRIPTAQQIVISGP GHFVQEEAGPEYAQLIIDFINGKPEGFTVEKKVLDKNSIL" gene 434772..435695 /locus_tag="NT01SARS_0475" CDS 434772..435695 /locus_tag="NT01SARS_0475" /note="identified by match to protein family HMM PF03060" /codon_start=1 /transl_table=11 /product="enoyl-(acyl-carrier-protein) reductase II" /protein_id="EJP71990.1" /translation="MNRVTAHTGSKYPIIQAPMGWIARSQLASAVCEAGGMGIIETSS GEIDNCKKEIQLMSDLTDKPFGVNLPLLFLKDDSMVNFCVDAGVRFVTTSAGDPTKYI GVLKDAGITVYHAVPSLDGALKAANAGVDGLVVEGTEGGGFKSPVEVGLLVLIQSIKQ NIDIPIIAAGGIVDGAGMAAVFAAGAEGIQMGTRFVSSLESPVHDNFKNKIVESGIDG TYILNKKSKPVIRALKSNLTDKINDSGQMDMSALMNIKDLYFDGDMEAAPALSGQSIG LINEVKSVKQIVDEIINEFNNTCESLGNIRF" gene 435698..436591 /locus_tag="NT01SARS_0476" CDS 435698..436591 /locus_tag="NT01SARS_0476" /note="identified by match to protein family HMM PF01063" /codon_start=1 /transl_table=11 /product="putative branched-chain-amino-acid aminotransferase" /protein_id="EJP71991.1" /translation="MPLSTKLDKRNEEIKIYINGEFFHRDQAKISVFDSGFLLGDGIW EGIRLVNNSWLFLDEHLDRLYEGCKAIDIRLDEDKKFLTNAIIETQKINNITDAAHAR VMVTRGNKIKPFQQPSLSKDGINLVIIMEHSEEHPNTDGVKLVTVPQVRGLPMSQDPK LNSHSKLNCIIACIQANKSGGDEALMLDPLGFVNTTNSCNFFIVKNGEVWTSTGDYCM NGITRLKVIEICKNNKIPIYEKNFSLVDVYSSQEAFITGTLGSLTQVTNVDDRLIGNV NHGWPVTEKLRKLYKDLIYAQ" gene 436581..437300 /locus_tag="NT01SARS_0478" CDS 436581..437300 /locus_tag="NT01SARS_0478" /codon_start=1 /transl_table=11 /product="putative branched-chain-amino-acid transaminase" /protein_id="EJP71992.1" /translation="MPNNLIIAMWSGPRNLSTALMRSFANRKDVTNVIDEPFYASYLK HTGKDHPMKKEVIKSQSSNIDDVKKLCNKIHKGITYQKHMTQHILDKDYEWINSLNNC FLIRHPQMVVKSFMKSWKDGEFEDIGFQQQYDIYNHVKNYIDENPLIIDSSRLRENPK KILSKFCNQIGIDEDERMYKWKPGIASYDGVWASHWYKSVIDSDSFTPEIKKDITLTD DEKRIVDMAMPIYEELLENSI" gene complement(437297..437716) /locus_tag="NT01SARS_0477" CDS complement(437297..437716) /locus_tag="NT01SARS_0477" /codon_start=1 /transl_table=11 /product="phosphate-starvation-inducible E" /protein_id="EJP71993.1" /translation="MNEPNVVQKFIWIGERAILLLIAVATLFATASEIVRIIEVETVN LSDLFLLFIYAEVLGMVASFYANNRIPVTLPLIIAMTALTRMIILQSKDLNAINIIYE ASGILILSIAAYIMTLKDKISLQKIMMREKIEDSENS" gene complement(437753..438616) /locus_tag="NT01SARS_0479" CDS complement(437753..438616) /locus_tag="NT01SARS_0479" /note="identified by match to protein family HMM PF06966" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="EJP71994.1" /translation="MFTSKLSSLTICFVIYLLAFYFSFILLPETINNIWLKITIWHIY ATLFVYFGSLVLKNSSLYDPFWSVAPLAIVIYLATISENSFLTNLIILIPIIFWGIRL TRNWIFGWPGLSHEDFRYIDLKNTYWIKSEINNLFGIHLFPTLIVNLSLYPLLYVFTF EISITFSLCISLLFTLLAVVLETIADEQMRNFRNNPANKGKTMKFKLWKYSRHPNYLG ELLFWFGICLIGINSDAAPILIILCPIPMMMLFVFVSCPLMDERSLKNRSDYQEYMEK TSQLLLLPPKQ" gene complement(438651..439031) /locus_tag="NT01SARS_0480" CDS complement(438651..439031) /locus_tag="NT01SARS_0480" /codon_start=1 /transl_table=11 /product="putative cytochrome C oxidase subunit 1" /protein_id="EJP71995.1" /translation="MTEYQVFNMMYVGLISNAMYFVGMVLLTWLGFRMANNIYNSQDA NMGAKVFTSAFCVLVGVMMFYTQQIGAAILDTAVTTLADIGAPSAERMQEYPDSPLSI GGAVQTLFVLLVVVFQLLIVWSKK" gene 439181..439912 /locus_tag="NT01SARS_0481" CDS 439181..439912 /locus_tag="NT01SARS_0481" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71996.1" /translation="MFIKLIISFLFITSINLLSDETVSMESDGTVAEFNYLTVTDPAS FMMALDRFDKSDCAKKWREESGVLVSLWSLRGSGSSHFILVVYENYEMMEKGRAIFSS CKDSAYMIKSFQDNTDTDRSWNWISENLVAARAWTNNTAFAKYNFNIEPGHESHYMNS WKNFMSSQLNTFDGSFGLNRIAYGNRYVSHMVYLGANSMDQLDKGIKSATASKEYMDF ASDVSSIRQNINVELVQLVKFYTGE" gene 439914..440321 /locus_tag="NT01SARS_0482" CDS 439914..440321 /locus_tag="NT01SARS_0482" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP71997.1" /translation="MKYFLSISFLLLIATDLYSDDHSEEQSFPGMVSSDVFDMGGGME MHVERRKTCNQGTVPKHFHPAAGTLVYVLDGVSQSKSTGKWKKYSNNEYWFEKSDWVH GGEDDAPDLGEACSDLLVIRVAESGKDHTVFID" gene 440415..441821 /locus_tag="NT01SARS_0483" CDS 440415..441821 /locus_tag="NT01SARS_0483" /note="identified by match to protein family HMM PF00682; match to protein family HMM PF02436" /codon_start=1 /transl_table=11 /product="pyruvate carboxylase subunit B" /protein_id="EJP71998.1" /translation="MTIKKPTITEVILRDGQQSLIATRMKTEDMIPILKDMDKVGYSS VEVWGGATYDCCLRYLDENPWDRLKVFKKSFKNTKLQMLLRGKNLVGYRQFDDSVIEF FIQNSIKYGINIFRIFDALNDINNIESSIKFVKKGKENAQGTICYTTSPVHNERYWIK LAKDIEDIGATSLAIKDMAGLLRPRTCYELVKKLKKNLNIPIHLHTHSTTGLSDATNF KAYEAGIDNIDTSISSFSNLYAHTATESFISMMYSEEKNPFDMKLLTKISEYFNEVRK KYKKYEGSMRGVDVNMLINQVPGGMLSILEKQLLDLNKADKLKLLIDEIPKIRKDVGY VPLVTPSSQIVGAQALMNVLDDQRYKTLNKEFIDMVNGKYGKIPGDICPKLKKKIDKA SKNIDIDDDVQNLEFYKNEFKEFCSDNQLKKISKNPTDLLNFILFPKEAKDFYLHKNK STLNDIIGLQEGFGLYVD" gene 441840..442856 /locus_tag="NT01SARS_0484" CDS 441840..442856 /locus_tag="NT01SARS_0484" /note="identified by match to protein family HMM PF04199" /codon_start=1 /transl_table=11 /product="cyclase" /protein_id="EJP71999.1" /translation="MNYIKYILIITFSTSVISGDYSDQRGMTKLLGTETTLRCAEQMM QPGAKTYELSYERTGTMPKSPFAGEYQPKFLPELGWPGSVHIYTMDVLNADVNDGNQG TQMDALGHFGYVDEVWNGEGELDTSKIKYFNELTTDEVKPTPESPLQKLGIETVPPIV TTAVLIDVRKHIFNGVAMDAGQYVTVDHVKKTIAKSSLKDRGILPGDVVLINTGWSDN YADPDEKGIYYSMAPGVSYNLVKYLSSKQIVGIGLDTWGVDTFADPSMLGEEVNQNPE GIANPAHHYFLTQSGIHTLENFKLDELAANAVELSCVVILPLKTKGSAASPIRPIAIG KSVL" gene 442859..443587 /locus_tag="NT01SARS_0485" CDS 442859..443587 /locus_tag="NT01SARS_0485" /note="identified by match to protein family HMM PF06426" /codon_start=1 /transl_table=11 /product="serine acetyltransferase 2" /protein_id="EJP72000.1" /translation="MTDDVWSVIKEEVRLRIQAEPTLEPYLNLLVLSQDSLVSAIASI ISSKLNSDALSSKDIKNFILDVYKNCDGIAESLEEDLIFFKDNDPACKYYSTPILFYK GFQGLAAYRAANCLWKNDRHTMSLFIQNRASEVFGVDIHPAAEILGGVMIDHATGVVI GETAKIDKNVSIFQGVTLGGKGNERGDRHPKIQSGVSIYASSTVLGNITIGKNSTIAA GSLVLKDVDPNTTVAGIPAKVLST" gene complement(443592..444617) /locus_tag="NT01SARS_0486" CDS complement(443592..444617) /locus_tag="NT01SARS_0486" /note="identified by match to protein family HMM PF00291" /codon_start=1 /transl_table=11 /product="cysteine synthase" /protein_id="EJP72001.1" /translation="MNYKSILDTIGNTPVFKVQNISINNTNLYVKAEYFNPASSVKDR LAVSIIENAENKGLLEPGNTVVEVTSGNTGIGLAMVCAAKNYPLVVTMPDSASIERRK LMRFLGAKVLLTPAAEGGTGAYKKAKDLVEKNNWFFARQFETEDNPAIHESTTAREIY DDFKDIGLDYWVSGYGTGGTFTGVSRYLKEKMPNTKLILTEPDVAQLVGSNTKQSRND DGSASKGHPEWNPHPIQGWTTDFIPLVLQESIDNNYFDELIPVSGEDGIFWANELAKK EGIITGVSGGSTFAVAVAVAKKASPNSNILCMLPDTAERYMSSVLFDEINTEMNDDEL SIFNSCK" gene complement(444618..446114) /locus_tag="NT01SARS_0487" CDS complement(444618..446114) /locus_tag="NT01SARS_0487" /codon_start=1 /transl_table=11 /product="putative adenylate cyclase" /protein_id="EJP72002.1" /translation="MNKLKIVFNFLKIKLKNIGSVLLKGSTAYMIGAFGLIQVASIVA DNINIAESLGVTKEIFMQYLFLGVIFLFPVFLIVTFIIKNNSIKNEILSSLDNNLSQI DDYRPKIAVIPFENLNKDSDGQFLVDGIAEDLLTELSMVKEISVATRKTCFSLRDKDI TSQNFKDEYGFDYVVTGSIRASENRIRISIELSDMKDDKVIWSNRFDSENKDIFDIQD EIVTKIVTCIVGEIEISSLKRANRKPTDNMTSYEYTLKGRALNQQYEKNANAEAIKML DAAIAADKTNPLPHSWKACTIGQSLALGFREDNEEARSDLMASLSKANELNDNDWNAL RIIAEAHLTLQDFEGAMVYANKAYNSNPNHPFVLWIYGRILLRYGNLESGIKILEQLY EREPIPMSDINTDRMNRELFLAYYLDKDYKKCEETFNKINECTFREWLINIDIKIKQN KDYAQDNWFVSGIERFNNLDKEKEISLFHLNNKFISNELKNLSQKVFA" gene 446227..447735 /locus_tag="NT01SARS_0489" CDS 446227..447735 /locus_tag="NT01SARS_0489" /note="identified by match to protein family HMM PF00450" /codon_start=1 /transl_table=11 /product="peptidase S10, serine carboxypeptidase" /protein_id="EJP72003.1" /translation="MRYLYILLFSIALAADDHSSEGKIDENCKDITKDNISERSFTNE YVGTFNGKRIEYTAGLKEKVLYEKDNPDAPQASFFYTEYIAKNGNQRPVIFSFNGGPG SASLWLHMGVLGPKVIKVPSNASDDGSPPYKIVDNKLSPLSEADLVFIDPIGTGYSRA IGCHTGEEFWGVNEDPKIIAEFIRRWITDNKRWNSPRYILGESYGGIRGPLLVSELRS GSITPIEVNGLLMVAPASDYQYLVFHPGNNSPHYGFLPSYAATAYYHDKVDTDKSLAD FYIDSKNFSLNEYGPALLKGTRISSEEKNDIMKKYSYFTGLSMRFVEDFDMRVDASSF RKELLRDEGYSVGRLDSRYKNTDYMAGGQYSDTDVSSEGFMSAYVTAIHTWFADIGVE MDMLYQSGDSDVYFSWKHPTQWKGNDFGYVNTVPHIARAQRYNKDFKVYVSCGLYDLA TPCFTAENFMYDNSVDMDRVVFSEFEAGHMMYNHQPSFDRFLKEVREFILND" gene complement(447732..450587) /locus_tag="NT01SARS_0488" CDS complement(447732..450587) /locus_tag="NT01SARS_0488" /note="identified by match to protein family HMM PF00246" /codon_start=1 /transl_table=11 /product="putative peptidase M14, carboxypeptidase A" /protein_id="EJP72004.1" /translation="MINNFKTKLLLTLIATSIHSDDLMNPTTYSKDLYTEVILDGNYS NDISHPDEFLEFSIGERVAKPSEISIAINTWKTQSDRIKVVEYAKSHEGRPLHAVFIS SPNNINNLDNIKNSINQLSDARETSDREARSIIEELPAIAWMAYSIHGNETSGADAAF AAIYHLIASNDDEVLNMLDNMIIIIDPLMNPDGRARFAKSLEQYRGTSPNYDDQSLLH TGDWPYGRTNHYYFDLNRDWFYLTQPETKGRVKLINEWRPQILVDGHEMGAQDTFMTG PPREPINKNIDKDLIKWGNVFAQDQGSAFDERDWRFYTGEWHEDLYPGYSFYVQFRGT LGILYEQSRMAEDGVRRPEGTIQSYKESVHHQYVSTMTNLKSLMVNSKAMYKDYWDGR KYNVSKNSEYANQSFVVLPTANNTRVNTLAEKLLAQDIELYRNTKDINVDNVTLQSGE FYDSYTIPSGSMVIPNLQPEAPLIAAILEFDADIDEAVLLEERQKRLKNGSSIMYDTT AFNFTMMYGLDALTVGENIESNLVRWEPNQIISEITEDAVMWATDGIDDRSVAFAARM MEQDVEVRIVDKDAVLSGHKLSRGSVVVIAMDNPEINNLPDMIKVVSEELNIAIMSLE SGFGPEELPDWGGRHFRLLEKPQIAMLSHEGFNSYDVGVSLWSIDHHLGIRHSQLNAS LASYGDLRRYNTIIVPSGRSLNEYTLKILKDWVSQGGTLIAHNSSTRSLASDKGIGSV KQLQNTFENSKEYNFDLMREIYALDNDINKDMTNENNVNFELSYPWEEIEEFLSENEL KDRDKWQSIFMPSGSFVAGRIDNEHWLTFGTTETIPVLYSNYPILMTRSNSDAPVRIG NMIPNNEIDVPRVVNWSSIPAGFDLNVRMSGLVWPEASQRIANSAYLTRERVGNGQVI LFSGEPNFRGATLGTNRLWLNAIVYGPGLGTRSKIDL" gene complement(450993..451478) /locus_tag="NT01SARS_0490" CDS complement(450993..451478) /locus_tag="NT01SARS_0490" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72005.1" /translation="MKVSNSKIIINCDETEIIKLIKSPNNLEKFHPFCKKNKVEVWNK EKSIDFVEYHNNKIYKRKFIDWSDNGYNLDIYEKRKLANISWNVVKISNNKSSLIITA VPYLPFKYKIINQLIFKLYVKPMLKNYLNSVVKGLKYYIETNNIIKEDQFGKHMWYST Y" gene 451505..453064 /locus_tag="NT01SARS_0492" CDS 451505..453064 /locus_tag="NT01SARS_0492" /note="identified by match to protein family HMM PF00884" /codon_start=1 /transl_table=11 /product="N-acetylgalactosamine-4-sulfatase" /protein_id="EJP72006.1" /translation="MLKYILILVFSISLLSSERPNIIIIITDDLGWGDVSYNGGPINT PNIDKLADDGLQMNRFYSAPTCSPTRAALFTGINSLKNGIIRPLNNPTAERYGLPLKH KILPEYLKEIGYQTALSGKWHLGMFSDEYLPRNRGFESTYGHLGGGIGYFDHALSGRL DWHRNGEILYEDGYSTTLIADEAIRIIENKNNETPLFLYVAFNAPHTPIQAEEKIINN LSDISDKKERVYAANIITLDREIGKIIDAIESKGILNETIIIFFSDNGPVFDIDPIAA TIAPDILDSKGNTLGLKGSKGSAYEGGIRVPAVIYYKGILEKSLSNQFFFVDDILPTL FGALNINPNQNNITGVNRWNDLIKNEIKPPKNVMTGNVIVHDERALFNDKWKLYYRNF VYNENSEKIFELYNVNDDPYEKYELSEKYPDVFESMKKTFDENPLIIETPYINPVQSY LYGDRYIGITDSPWLERTYKEKELPHPIVQNLVFGWIIFLTFKHIIIPVLILLTLVFY FMKFRNNISSN" gene complement(453056..454543) /locus_tag="NT01SARS_0491" CDS complement(453056..454543) /locus_tag="NT01SARS_0491" /note="identified by match to protein family HMM PF01494" /codon_start=1 /transl_table=11 /product="putative 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase" /protein_id="EJP72007.1" /translation="MNKYDVAICGYGPVGSLCSLLMADYGYKVLLIDKNIGTSPTARA INTDGEQLRIFDKFGLAEKIIENSNQIEKIHFSKKSLEPIQSITQTLGDSSMGWPNQV LFYQPELEGFVREVVESKENIDVMELCELTDFNDKGNEVEIICKNENQEIKFLSKFLI GCDGASSFVRKKLNIDLDDFGYNQKWLVCDAHLTQNIYLKNELIQVCDPKRPCTFLHG RRGHLRFEFRVMPEDNLKELKDEAFIWNLLSPWINKKNAILERADIYNFHACIANRWN INNVLIAGDSAHQMPPFMGAGMGTGIRDVTNLSWKIHLILQKKANKKILETYQKERYP HAKWTIGQTITIGELIEGFCAAEQGKEFIPEKKGYDVRFPHIPSGIFKNSKDGITGYP IPQPKLFINNNCIKLDKLINSNFVIMSKSDIKKVSEKANQIIKKLEIKFIRIKDIDDP DKLLEKIFDLYKYVLVRPDLYVYGGSNENDLSEMIESIDKSFELI" gene complement(454540..455448) /locus_tag="NT01SARS_0493" CDS complement(454540..455448) /locus_tag="NT01SARS_0493" /note="identified by match to protein family HMM PF01557" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate hydrolase domain protein 2A" /protein_id="EJP72008.1" /translation="MKLITFLLKDNPKSKRIGAIKNDTVIDFSSSDLPKDMINFIKLG STGLDIANDVIENQKNAHAIDDVILKAPIDKPNKILAVGLNYKKHIDEAKELKDHHSN DVQLQDQFPNIFNKQNSSVNDPFGDVHRPNASDWLDYEGELGFIIGKECRHVSYENAK NCIYGYTVVNDFSIRDWQFRGPPHTMTMGKSWDTHCPFGPYIVTSDEIDDPHNLTLKT FVNDEERQNTNTNLMIYDCYTLIEYLTTAFTLEPGDLIPTGTPEGSAVTTQNWLKPGD KVKVEIEGLGYIENNIIQEPNNTQKS" gene 455502..456188 /locus_tag="NT01SARS_0494" CDS 455502..456188 /locus_tag="NT01SARS_0494" /note="identified by match to protein family HMM PF00903" /codon_start=1 /transl_table=11 /product="glyoxalase family protein" /protein_id="EJP72009.1" /translation="MKKIYNKNLYQNFKSDYSPDDFHHIAFKTTNYEKMVDFYKNLFG CEPLYQSDLITFLAYDNEHHRIAIANTSGVLNSLNFIQRSIMKFKIFLNKKIPSIEGL DHVSYRVNPIDKWFDFYFSAKERGLNPLWTINHGWISGIYYRDPDNNLVEVFFEHFSS ADEFKNNISADFEDEPIGTNMDVEVLHKMFKSGAPFEDLIKKGNTVPEGKKPVSGIEA VKNMKKKFKD" gene 456251..457042 /locus_tag="NT01SARS_0495" CDS 456251..457042 /locus_tag="NT01SARS_0495" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72010.1" /translation="MVRVALFELNIKFDERHIKLCDQYAEGENLDKNFLDINPLATVP VIKINNEVIVNSTTIIEEINKRFQSNLCIEEDDSVKSFVKQTTITEGDKFASTIGTII PVFSAPLIEFMIRKLPLKSIIKIFMKHPRKDRKMIFLSMYFFGVAKKFPNIAIKKFVD ELIKFEELLNEDNTYFYNEFSHIDINMMCVFNRLEDLKLSEVITTNKTPLLQRYWKNL QKRDSYKKGILNYYTSKEHKVIKDFYNDAPSPFLKPILVELAQRN" gene 457057..457275 /gene="infA" /locus_tag="NT01SARS_0496" CDS 457057..457275 /gene="infA" /locus_tag="NT01SARS_0496" /note="identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="EJP72011.1" /translation="MSKEDQLEFDGEVIETLPNTKFKVKLDNGHIITAHISGKMRKHY IRILTGDKVKVEMTPYDLTVGRITFRGR" gene complement(457276..459516) /locus_tag="NT01SARS_0497" CDS complement(457276..459516) /locus_tag="NT01SARS_0497" /note="identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease ATP-binding subunit ClpA" /protein_id="EJP72012.1" /translation="MFSKDLELSIASLFDKAHEANIQYITVEHLLLMILSDFEVKEFF KSQDIQIESLKQSLNDHLKNNVVAKIDQQKPVQPTLGFQRVLQRAVFHIQSSGKGVVK PINILVAIFSEKESHSVFLLNKFKLSRLDVVTYLSHGKPSKKSENDKDNTNEDLPNES SSSENDFLINLNQLVSENKIDKIIGRKKEIERLVQILSRRNKNNPLLVGESGVGKTAI AEGLAYLISNKNVPSIMENSVVYSLDIAALIAGTKYRGDFEKRLKSVLSFLSKEENPI LFIDEIHTIIGAGSASGGSLDVSNLLKPALGKGQIRCIGSTTFQEYRGIFNQNQALSR RFQKIDVIEPSFDECEEILIGIKDIYEDYHNVKYSAEAIKSSIELSSKYINDRFLPDK AIDVIDETGALLNINRKNKKIIKVTKSHIETTISKITKIPEQSITSKDKKSLKNIEEN LKRVIFGQDKAVETLSNAIKLSRVGLRDENKTIGSFLFTGPTGVGKTEISKQLSEIMG IELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAIVKSPHCVLLLDEIEKAHP DIFNILLQVMDAGVLTDNNGRKSDFRNVILIMTTNIGAELLSKRNIGFAESSNETDAM NSLNKLFSPEFRNRLDETIQFNYLDKTVILSIVDKFLTKLQAQLDKRNVEIVVSNKVL NWIADNGYDKEMGARPMERFISQNIKKPLVDKLLFGNLKSGGVIKVDLEKGKLKFLEE KNKVKV" gene complement(459519..459860) /gene="clpS" /locus_tag="NT01SARS_0498" CDS complement(459519..459860) /gene="clpS" /locus_tag="NT01SARS_0498" /note="identified by match to protein family HMM PF02617" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease adaptor protein ClpS" /protein_id="EJP72013.1" /translation="MIILSKDNENNSSSDLGTVVLEKDPQVKEPPSYQVVLINDDFTP MEFVVFVLQTVFGHTHQKSTEIMMTVHTKGRGVCGIFSKEIAEMMSYEVNTMAKDHGH PLLSEIEPLTD" gene complement(459860..461113) /gene="icd" /locus_tag="NT01SARS_0499" CDS complement(459860..461113) /gene="icd" /locus_tag="NT01SARS_0499" /EC_number="1.1.1.42" /note="identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183" /codon_start=1 /transl_table=11 /product="isocitrate dehydrogenase, NADP-dependent" /protein_id="EJP72014.1" /translation="MTYKKIKIPKKGEKISYKKGVLTVPDNPIIPFIEGDGIGVDITP PMINVVNQAVKIAYSGERKIEWMEVYCGEKATQVYDKDTWLPDETIEALKEYVVSIKG PLTTPVGGGIRSLNVSLRQLLDLYVCLRPIRYFDGVPSPVKRPQDVDMVIFRENSEDI YCGVEFEGNSKEAKKLVKTLKNDFEVSKIRFEENVGIGVKPISQAGTTRLVKKAIDYA IANNRTSVTLVHKGNIMKFTEGAFRDWGYEVAKNDYGGVEIDEGPWQEITNPKNGKKI IIKDVICDAFLQQILLRPTEYDVIATMNLNGDYISDALAAMVGGIGIAPGANISDDYA VFEATHGTAPKYAGKNQVNPGSIILSAEMMLRHMGWVEAADILMESMDRTISAKKVTY DFHRMMDNAEKVTSSGFADEMIKRM" gene 461184..462287 /gene="trmU" /locus_tag="NT01SARS_0500" CDS 461184..462287 /gene="trmU" /locus_tag="NT01SARS_0500" /EC_number="2.1.1.61" /note="identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420" /codon_start=1 /transl_table=11 /product="tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase" /protein_id="EJP72015.1" /translation="MNEFNIDRIVKKTVVVGMSGGVDSSVSAYLLKKDGYDVIGLFMQ NWQSEPGEVCTSEIDFKDASLVCDKLDIPLHRANFSQEYWDNVFEEFLSEHKNGRTPN PDILCNREIKFKSFLKYAFTIGADYIATGHYASIKMSEIGPMLCRAKDLKKDQTYFLH EVRSSEFEKCIFPLSNLYKDEVRKIAKDIDLSVSNKKDSVGICFIGERNLKDFLGRFI DLEKGKILDEFGNNIGTHNGATLFTKGQRQGLNIGGIKNKQDLPWYVFDKDINKNEVH VCQGVDNELLFDSGLKMKKINWINEFNFEYPKTALLQVRHQHKPVKCTIVKESNKYNI KFEEKIRAVASGQSAVFYDNNVCLGGGIITETY" gene 462310..463656 /locus_tag="NT01SARS_0501" CDS 462310..463656 /locus_tag="NT01SARS_0501" /note="identified by match to protein family HMM PF00206; match to protein family HMM PF08328" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="EJP72016.1" /translation="MKYSHHNLSPLDNRYRDKVSDITECFSESALIKVRFVIEIEWLI FLCTNYPKKFKPLSKASISKLKKFKTNFSDKDVIRIKNIEKKTNHDVKAVEYFIRDYF KKDKNLTKYINLIHFGLTSEDVNSLSYAVMIENGNKILIKKVSKLITQLNKMSSKWKN ITFLSRTHGQAASPSTLGKEIKVISKRLSREIETFKKIKGLAKFSGATGNYHTFNMVD SSINWQKASKRFINSFGIQQNKVTTQIEPHDWIAEVMHVMIRINNISIDLSQDMWTYI SNDIFKMNLIENEVGSSTMPHKVNPIDFENAEGNFGLSNALANHFSDKLTKSRLQRDL SDSTVLRNIGNAYGYSHLALSSLNKGLNKLTPNKTVINNELDDNWEVLTEAVQTIMRY EGINDAYEQLKSFSRGRKITRETYIEFVTNLKISKSSKDKLLKLTPFNYIGLAKKL" gene 463772..465352 /locus_tag="NT01SARS_0503" CDS 463772..465352 /locus_tag="NT01SARS_0503" /note="identified by match to protein family HMM PF00463" /codon_start=1 /transl_table=11 /product="isocitrate lyase" /protein_id="EJP72017.1" /translation="MSKLNNTIESANNIPEINTSNWKSINPEYVARMRLQNQFKTGID IAKYTASIMRKDMDDYDNDPSKYTQSLGCWHGFIGQQKLISIKKHFGTNDKKYLYLSG WMIAALRSQFGPLPDQSMHEKTSVASLIKELYTFLKQADARELGGLFRELDSAPDNKK DEVMKKIENFETHIVPIIADIDAGFGNEEATYLMAKQMIEAGACAIQIENQVSDEKQC GHQDGKVTVPHAEFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTARLAITHEEGD LGDKYNSFLDVDEIDETNMKHGDVMINRKGKIVRPKRLPSNLYQFRKGTGEERCILDS ITSLQNGADLIWIETEKPHIGQIASMMDEIRKVIPNAKLVYNNSPSFNWTLNFRQQVF DAMSEAGEDTSDYKRDDLMNEKYDNSELAMRADDKIRTFQADASKEAGIFHHLITLPT YHTAALSTDNLAKEYFGDEGMLGYVANVQRKEIRQGIACVKHQNMSGSDMGDDHKEYF AGDAALKAAGEDNTMNQF" gene complement(465349..466554) /locus_tag="NT01SARS_0502" CDS complement(465349..466554) /locus_tag="NT01SARS_0502" /note="identified by match to protein family HMM PF00144" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="EJP72018.1" /translation="MVQGNYKPEFQKIYDIFNDQINSDYELGAGISIEYKGELIVDLF GGFKSESKTTKWTKDTLVNVWSVTKAVTGICILKLISDEKLDVNKLVSDYWPEYGCNG KEDTRVIDLLTHRAGMFGFQNGYPQSNWNDWDLYVDALQNQMPFREPGTTQGYHAVTF GWLIGELIRKIDGRSVGKYFEDEFAKPLNLDFHIGLKEENLSRCADVTYKKLDSIQPP IGFIKYVPNFILNGSLKSFKNSITSNDFSKAFNSENFDKNNPNSVDWRTAEVPSANGH GTARSLSKLFGTLSNLIEDNESIIDKDVLKTAIEVHSSGPDTVLFGANLNFGYCFMVE QSFNQNINFAPILNTQCYGHAGIGGSVAFGDLKNKIGYSFVCNRQQKMKDLYKTSNLI TKALYEILD" gene complement(466559..466735) /locus_tag="NT01SARS_0504" CDS complement(466559..466735) /locus_tag="NT01SARS_0504" /codon_start=1 /transl_table=11 /product="ApbE family lipoprotein" /protein_id="EJP72019.1" /translation="MSEFILGFLIIAVAFIGLATSLFFKGQPLKGSCGGIANMKDGSS CEICGRTDPEQCNN" gene complement(466732..467712) /locus_tag="NT01SARS_0505" CDS complement(466732..467712) /locus_tag="NT01SARS_0505" /note="identified by match to protein family HMM PF02424" /codon_start=1 /transl_table=11 /product="putative thiamine biosynthesis lipoprotein ApbE" /protein_id="EJP72020.1" /translation="MTRKLFSKLIALVAGIVLTIVAYNHNQTSIYQINGQAYGTSWSV VSSQYIGDHHKNNIINIINNIDFVASNYKNNSEISIINNSPLNKISISNHLYKILKVA KYVENNSDGFYNIMMAKKSGEFGFSPDFGNKNIQLNTSTFRIDNNEKILYKNSSNWFD LSSVAKGYAVQVIHEYLINNDLINHMIDIGGEVIINGTKHGDSWNIGIQDPSVIQNKA IKVISNNNSKFLAIATSGEYRNFKIDDSGNRISHTINPKTLKSINNQISSVTVIHESS ASYADAFATAFNAMGFTNAFDKANELNIAAMFILNNNEIIYSNKWYDLQS" gene complement(467721..468947) /gene="nqrF" /locus_tag="NT01SARS_0506" CDS complement(467721..468947) /gene="nqrF" /locus_tag="NT01SARS_0506" /EC_number="1.6.5.-" /note="identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR01941" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, F subunit" /protein_id="EJP72021.1" /translation="MSIDLLLGVISFSGIILLLVFVIIIARSQLVSTGDVSIEINGDS QNPIVVPAGSKLLTTLADNNIFLASACGGGGTCSQCKCQVFEGGGSILAAEESHFNAT QKKDGWRLSCQVPVKNDLKIQVPDDVFGVKEWECEVISNDNVATFIKELVLKLPEGEN VDFRAGGYVQLEAPAYDLDYKEFDISDEYHEDWDRFKIWDNKSTTSEPVIRAYSMANY PEEKGIIKFNIRIASPPPGQDVPPGLMSSWTFNLKPGDKVKVFGPFGEFFAKETSAEM VFVGGGAGMAPMRSHIFDQLLRINTDRKITFWYGARSLKEMFYVDEFNELADKYDNFE WHVALSDPLPEDDWSGDTGFIHNVLYENYLKKHDAPEDCEYYMCGPPMMNKAVIDMLL NLGVEPENIALDDFGG" gene complement(468949..469560) /gene="nqrE" /locus_tag="NT01SARS_0507" CDS complement(468949..469560) /gene="nqrE" /locus_tag="NT01SARS_0507" /EC_number="1.6.5.-" /note="identified by match to protein family HMM PF02508; match to protein family HMM TIGR01940" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, E subunit" /protein_id="EJP72022.1" /translation="MFEHYLNIFITTVFIENIALSLFLGMCTFIAISKKIDAAFGLGV AVIVVCLLTVPLNNLIYNYILREDALTWLGIEGTNLEFVELISYIGVIAASVQILEMF LDKYVPALYNALGQFLPLITVNCAILGASLFMVEKDLLFTESIVYGFGAGFGWALAIV VLAGIREKLKYSDIPEGLKGLGTTFIIVGLMSFGFMSFGGISL" gene complement(469553..470239) /gene="nqrD" /locus_tag="NT01SARS_0508" CDS complement(469553..470239) /gene="nqrD" /locus_tag="NT01SARS_0508" /EC_number="1.6.5.-" /note="identified by match to protein family HMM PF02508; match to protein family HMM TIGR01939" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, D subunit" /protein_id="EJP72023.1" /translation="MNLKRYQEVIINPLIKENPITLQILGICSALAVTNNLSVTMVMC VAVTSVISFSNLFISLIRNYIPTSIRIIVQMTIIASLVIVVDELLKAYDYETSKKLSV FVGLIITNCIVMGRAEAFAMKEKPFVSFLDGLGNGIGYSIILIGVAFIRELFGSGTLF GYEILPLVSNGGWYMGNNLLLLPPSSFIIIGLFIWLIRSLQKEQVEEDDFVVSKHSTS PDLTKREINV" gene complement(470229..471002) /gene="nqrC" /locus_tag="NT01SARS_0509" CDS complement(470229..471002) /gene="nqrC" /locus_tag="NT01SARS_0509" /EC_number="1.6.5.-" /note="identified by match to protein family HMM PF04205; match to protein family HMM TIGR01938" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit" /protein_id="EJP72024.1" /translation="MNESIIKTLAVAFSVCLVCSLIVSASAVSLRDLQKENKLNDKRL KVLQVAGIYDQNISISDQFNQLESKFIDFDSGMLMAEYNNFNIDEYDQVVVTKDPALS SEVPASEDIAIIKNRENVGKIYILRDDLDNIKKLILPIRGYGLWGTLYGYIAIESDFN TVSGIEFYDHKETPGLGAEVDNPRWKSSWKGKKIYNNDQVALEVIKGKVDTGDIESEY KIDGLSGATITSRGVTNMVSYWFSDSGYANLLKELNYES" gene complement(470995..472224) /gene="nqrB" /locus_tag="NT01SARS_0510" CDS complement(470995..472224) /gene="nqrB" /locus_tag="NT01SARS_0510" /EC_number="1.6.5.-" /note="identified by match to protein family HMM PF03116; match to protein family HMM TIGR01937" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, B subunit" /protein_id="EJP72025.1" /translation="MKIIRNYLNNVKPNFVGEGKYTTWFPLFDAIENLVFSYGKKTKN PIHVRDAVDIQKVMVTVWLATFPAMFFGMYNLGANSLEYLESIGQQNTGDWHHYFVNM VGYDANSFIAKLWFGACYFLPIYFVVFTVGIAWEALFAIVRKHEINEGAFVSTVLFSL SCPPDIPLWQAAMGISFGLVIGKEIFGGTGKNFLNPALTGRAFLYFAYPAQISGDKVW VAGISDYNIIPEGYSGATALGMAAESGMAGITNSYTWMDAFLGNIPGSVGETSIIAIL IGMVILLMTKVASYRIILGTFIGMILMSSILNIVGSETNQMFYIPWYWHAVIGSFAFG LVFMATEPVSGSGTNTGRWIYGIVIGVTVILIRVINPAFPEGMMLAILFANLLAPVID HLVVMSNIKKRKALYNE" gene complement(472221..473528) /gene="nqrA" /locus_tag="NT01SARS_0511" CDS complement(472221..473528) /gene="nqrA" /locus_tag="NT01SARS_0511" /EC_number="1.6.5.-" /note="identified by match to protein family HMM PF05896; match to protein family HMM TIGR01936" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit" /protein_id="EJP72026.1" /translation="MIKISKGLDLPISGSPSLDISDEPKVSSVALLSNDYVGMKPTMF FKEGDHVNCGEKIFEDKKNKGVFYCAPGSGLIKAVNRGDKRKFISIEIDLDNEEEFIE FNDQENFINLLQETGLWNSFRTRPFNRTPAISDIPKGIFINCCDTNPLSVDPYEIIKY DQDLFDLGLEILVKKFECDIYVNYQNDKFEKNNKSVTYTQFSGPHPAGLSSTHISQLC PVNLNKIVWTIGYQDIISIGHLMQYKTLRTSKIIAIGGPSVYEPSLIRTRIAGNIDEI TAGKINPNSRIISGSVLHGHQSDGVMNYLGIYDNQISAIPDEVNEIFMNWLMPGKNLH SKLNVFISSFLKPKEFIFNTSIGGGNRAIVPVSSYEEVIPMNILVTQLLKSLVVSDTE MAIDLGMLELVPEDLALCSYVCPSKYDYSSILMDNLNKIFNEL" gene complement(473615..475117) /locus_tag="NT01SARS_0512" CDS complement(473615..475117) /locus_tag="NT01SARS_0512" /note="identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase A, ic" /protein_id="EJP72027.1" /translation="MGDERDINFQSTERQKRILPEDSFGDWKWREALAELMVPLIGSL YRDGVNLMIYGKSLVNESPVAIMKAHRFARQSDNNELSEFETYPMIEYISTLNLHDCE IDIGEIAVKCPFFDEIKEDQSKIKDYLNKELESVIDVETVRPDEPKSIVLYGFGRIGR LLARMMTQTTGPGNYFRIKAIVIRKASDDDIFKRASLLSRDSVHGPFDGTVRVDEENT SLVVNGNAIKVIYASSPDEVKYADHNIIDPIVIDNTGVWRDEDSLSKHLKSGASKVIL TAPAKGDIKNIVFGINDDILNDNDAIISAASCTTNAIVPVLNAINDEYSIEGGHIETV HAYTNDQNLIDNFHKGDRRGRGAPLNMVITTTGAVKAVAKALPELEGKLTGNAIRVPT PNVSLAILSLQLNKEVSVTDVNNYLRTVAFHSQYREIIGYVNSSEIVSTDFYSSPFAS VIDSQATIASNKSITLYCWYDNEYGYSKQVLGLVKKVANIELPRLPKPIV" gene complement(475160..476251) /locus_tag="NT01SARS_0513" CDS complement(475160..476251) /locus_tag="NT01SARS_0513" /note="identified by match to protein family HMM PF00441" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="EJP72028.1" /translation="MNLNYSEEQTMLREQIQKFCESEYDFYKREDIVKSDSDFDPNVW KLFAEQGWLSMPFSEDAGGLGFGAIELSILFEEFGKSLVIEPYLATVVLSGSILDKSS YESKNQIIEQICSGEMHVSFAYAEVNKSYDYSSPNTTLDSGNCLNGTKTLVLNGANAQ KLIVSCSKGDELTLVILDSNTKGVSINSFSTIDGQSCSEISFENVQLDSLNIIATADE AKRLIDESINLATLCVSAEAVGCMESCYLKTLEYTKGREQFGQPISNFQVLQHRMVDM FIESELAKSLLIKAMLEVNNNSDDMFKHVSALKSYIGKSGKLSAKEAVQLHGGMGVSE EMMIGHYLKKMISIDALFGNADYHLKKMS" gene complement(476255..477424) /locus_tag="NT01SARS_0514" CDS complement(476255..477424) /locus_tag="NT01SARS_0514" /note="identified by match to protein family HMM PF00441; match to protein family HMM PF02770" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase" /protein_id="EJP72029.1" /translation="MDINFTKEDIAFRDEVREWLANDYPKHVKEKTDNGIALTRQDMV DYHKALSKKGWMGYNWPEEHGGTGWSSTQLYIFNKEFGLAGCPPLLAFGVSMVAPVIW TFGNEEQKKKFLPDILNFDTWWCQGYSEPGSGSDLASLKTKAVLEGDHYIVNGAKTWT TLAQNADWIFCLVRTDNSGIKQEGISFLLIDMKTPGIEVKPIITIDGEHEVNSVFFTD VKVPVENLVGEEGKGWTYAKFLLAHERFGIAGVGASMRQLNRLKGIISKLDNSELQKK VNELEVALSAIEITELRLLSALENGGHPGAESSILKIKGTEMQQNLSELFVEAAGEYA LMYPGPHGYESNDKPAGPEYAAEGLSGFLNLRKTSIYGGSNEIQKNILSKFVLGV" gene 477484..480768 /locus_tag="NT01SARS_0515" CDS 477484..480768 /locus_tag="NT01SARS_0515" /note="identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="EJP72030.1" /translation="MFKNKYNKYQNLIYEIFEQFQISDQSICLITKNNQESIYIYNGL KYFFDEDSLKLFPETEVLPYDHFSSPERIIQNRFQIINEAYSSKNILITSIKNIFERY PEIEYFKSFETFKLGHKISVFNLVKVIESLDYVKKTNVEVINDYAVRGGIVDIFSPMY ENPLRIEIFDDTIESIRFFDSETQLSIENIDKFFLSKGSLFSLNEQKILTFISRWRNY FINDDERYCDIFQKIKNGNIPEGIEIYLPLLFKNTVNFFELFNHHDIYSSLNLFHEID IYDEFIKQRFNDENIDHKRPLLKPDKLYIEKDELQQILKNVKNINIKEINLQPENFDD LINLINKNSFKENLLIVTSFADQIEELCKKIHHKTQIISDFSEHNNGISLMYGEPVTP FFDERNNTYIFHKEVIDKDYSFTSSVKKDDMNIIKNNDFSLFKENDYVIHENYGLGIY SGLETVDANNTSNEYIKIIYADNENLYVPLSNINKITSYHKKNIDKGIALDSLSSTKW KQKKDRAIKRSIDHAAEILDIESRRQKSSSFSLRIDDKSLQEFNDEFPFTETHDQVVS FNSIQKDLSLIKPMNRVLCGDVGFGKTEVAMRAAYISAFSGKQVVLIVPSTILCDQHF NSFVKRFMNFPVSIKKLNRHTTLKNKKEIINDFNNHKIDILITTHIIFNNEVEFQQTG LLIIDEEHKFGIKQKNFIKDKQSNIHILYLSATPIPRTMNMVYAGLKDFSFLQTPPSN RLNIKSFLKTHTSQLLKEALVREKSRNGQCFIVQNDINKMENLKNEINQLLPEFRIGI AHGKLKKADIQKVMSSFHAGNLDGLICTTIVEMGLDIPNANTMIVINSQNFGLAQLHQ LRGRVGRSERQGYCYYLVPNMDIPKLSKDRLASVIKNSKLGEGFLIAQEDLEIRGGGE MLGDKQSGHVENVGMSLYLSMLKSALDNTQESTTINDIEINFYDSAYIDNNYLPSAIE RLKIYRKINKIKSSADLIDIKNNLIDRCGKMPPETKNIIENKKLEIIARSIGIKSIKS NKLNTSFLITSDFSESKFDKLISLVKSDPQKFAIDQENKFIYKLNELESITRRQKVTD FLNALL" gene 480755..481606 /locus_tag="NT01SARS_0517" CDS 480755..481606 /locus_tag="NT01SARS_0517" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72031.1" /translation="MPFYKIFFLLIAFSSFIINANEENSIIDEYRVEIVIFKFKEVST SENFVEELTIPSKSVITLVEPKLYLNETALNSFPKNDSFFQNLLKNLKPINNNSSENL SDKNKNVVNPKNWFRKNNKVIYLDDYQKKIIKSNDVQFLGSFSWVQGIDELDSSKFVF LENSDQEYGYFLKLYKKRFMHIDLKAYLGIVNDLQLESTKKYRNEYDALIKKNIVDSN DIDLQIYLPNKSDKIEIKNNQTSSNVKKRPSRLDKFIDIEQRVFNEEIYLFDHPYFGV LVSIIKV" gene complement(481603..482190) /gene="yhgI" /locus_tag="NT01SARS_0516" CDS complement(481603..482190) /gene="yhgI" /locus_tag="NT01SARS_0516" /note="identified by match to protein family HMM PF01106; match to protein family HMM PF01521; match to protein family HMM TIGR03341" /codon_start=1 /transl_table=11 /product="IscR-regulated protein YhgI" /protein_id="EJP72032.1" /translation="MSEIIKITKSAEEYLAKLIQDKNETDLSIRIFISDPGTPKAETC LAYCKPDEAMPDDLVLNLDLINVNLEKRSLPFLQDAEVNFDKDNFGGQLTIKAPNARL PNISPESPVEDRINYVIYNEINPMLESHGGEVSLVEFNDKGEAVLQFGGGCQGCGMVD VTLKDGIEKTLVEQIPEVTGVKDMTDHSIDDNAYY" gene 482196..482360 /locus_tag="NT01SARS_0518" CDS 482196..482360 /locus_tag="NT01SARS_0518" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72033.1" /translation="MWFKRIINSFFGIRKKNDLENDLKNVNLFKLIILFIALNIFFIS FVLTITRIFL" gene 482357..483358 /locus_tag="NT01SARS_0520" CDS 482357..483358 /locus_tag="NT01SARS_0520" /note="identified by match to protein family HMM PF05958" /codon_start=1 /transl_table=11 /product="tRNA (uracil-5-)-methyltransferase" /protein_id="EJP72034.1" /translation="MNKFEKFNNEIKTYFRSEVVTNLSPSTSHRSRCEFSYYDNHYAM HGPNKKLLLKSFPSAASCIKKVMPRLIKEINNSSELNERLFQINFRSNKDNKVMVTLI YHKKINESLIALINNLSKKYDLLLIARSKNFVYSTNQMYLDNLIDGYINYQTDNCFYQ PNKFLLEMMIEKVSEMVINPKDLLEIYCGVGTFTLSLSKIFSKVFATENNRSAIKCLK KAMNENQIHNIMHARLSAEEVCDAFHGKKFFRLNEIDINSLDISHVLVDPPRSGLTYE VIDLIKNFKNIIYISCNPETYLRDIKKLKNHKLKNVEIFDQFPNTEHLEIVSLLEAS" gene complement(483351..484334) /locus_tag="NT01SARS_0519" CDS complement(483351..484334) /locus_tag="NT01SARS_0519" /note="identified by match to protein family HMM PF00722" /codon_start=1 /transl_table=11 /product="beta-1,3-glucanase BglH" /protein_id="EJP72035.1" /translation="MQYPIIFFLFFLVSCGGGSGDLEVNSNNSDPISGYKYVPPSGTS NDNCVARTSNVIWSEDFDNNNLDLSKWVYDEGCNDNGGGCNGNNELQNYTSNDTDNLF IENGYLKIQPIFENNIGSDNVQQNFTSAKIMTKDKFAIDVNSRISVCFRLPEGTGMWP AIWMLPYDGTPWPSGGEIDLLEAKGRSYPIDGSPAQDNIVSSAVHFGTQWPDNRYIVG EFYSSNENTFQNKFHSITLIFQENNINFYINDEVTPHLSINPTIFPLNQYQYPFNRQF YLILNVAVGGNFDSGRFNPSDFCIDSVCSNFSDNPDKKRLLIDWIEYEKIN" gene complement(484356..486053) /locus_tag="NT01SARS_0521" CDS complement(484356..486053) /locus_tag="NT01SARS_0521" /note="identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835" /codon_start=1 /transl_table=11 /product="Na(+)-linked D-alanine glycine permease" /protein_id="EJP72036.1" /translation="MEQFNNFLVLLDSNLSGSWWFPALLIGTGIFFTIYLGFPQFKYF RSALKIVSGKNTNSDTEGETTGFQALTTAMSGAVGTGNIGGVALAIWTGGPAAIFWMW ITAIFGMTTKYVEVTLGHKYRTKLSDGSISGGPMYYIEQGLNVKWLGVNLPAKSIAVL FAFFMMITAIGSGNMPQINNIALVMNTEFSVPKLFTGLFLGVLLWIIIIGGIKRIASV ASKIIPIMGLIYFGGALIILVENYQNVIPSFNAIFSQVFTGSAAVGGFLGASFAMSLK YGVARGLYSNEAGQGSSPIAHASSKNKSIDQGVVSILEPFIDTIVVCSVTALVILSSG VWTQKFDTTFSKTDMVILEGVYSDEKNIEGMYIYPDDIFQLTNYVQSIDSNVKEFNGT INVEDGQIKNKNITVLHSRSIAENVQVSMNDNLDNLYSGSLNVANGKVTDQVTIKGKS LVSSAELTAKAFSQGILGQYGGKLVAIALLLFAFSTSITWCYYGDRSTAYIFGEKGVI WYRNFYVLCFILAAVIDTTVVWNIAYVVVALVSIPNLIAMFFLRKEMKLLSDEFEVR" gene complement(486058..486288) /locus_tag="NT01SARS_0522" CDS complement(486058..486288) /locus_tag="NT01SARS_0522" /note="identified by match to protein family HMM PF00462" /codon_start=1 /transl_table=11 /product="glutaredoxin" /protein_id="EJP72037.1" /translation="MDKKVEIYSRSNCSYCDMAMNFFDSKGIKYEVYDADDPKIFNEM LERNPAARTVPQIFIDDDLIGGYTDLIDKYSE" gene 486309..487076 /locus_tag="NT01SARS_0524" CDS 486309..487076 /locus_tag="NT01SARS_0524" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="dehydrogenase/reductase SDR family member 4" /protein_id="EJP72038.1" /translation="MSLFNLKNKSILITGSSRGIGKSIAHQCALHGAKVIISSRKENM CIEAANEINNDVGTESAFSVPANISDESQLKVLVEKTREKLGKIDVLVCNAATNPFMG SMLDMPSEKFDKVMNNNIKSNQILCNLVLPEMIEREDGCIIIISSIAAIKGSPILGAY NISKAADVMIVKNIATEFGHKNIRANSIAPGLIKTDFAKALWENPDILKTVLGTTPMQ RIGEPEEIAGVAVMLASNAGNYINGQTIVVDGGTTIS" gene complement(487066..488034) /locus_tag="NT01SARS_0523" CDS complement(487066..488034) /locus_tag="NT01SARS_0523" /codon_start=1 /transl_table=11 /product="DNA polymerase III, delta' subunit" /protein_id="EJP72039.1" /translation="MIDISLNWLDKIIESINFEKLPHGLIINGPNGIGKEFLSREIAS RLLLNKTTKILDKELFNSNNHPDFFMLDKEQILLKHITLREKEWDDELGQRNVNDFLS VTPSIAINKVALILNGQTMKKESQNALLKSLEEPAPNTFIIITTNRPRSLYKTIYSRC QVINIPPLSNDDLNEWLLANGITDFKSHDFPSYKTPLRIIDDISNDQQFKFKDFINVL TNFLNNNSDQLAVIKSLNNLDIDKISKLNFMVEFLKIVLKSKLLSENLSGIYKDFNNA KFNNLKLSNILNDLNNTRAKYYEVPQINEDHVLNYYLSELKNSIKI" gene complement(488031..488621) /gene="tmk" /locus_tag="NT01SARS_0525" CDS complement(488031..488621) /gene="tmk" /locus_tag="NT01SARS_0525" /EC_number="2.7.4.9" /note="identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041" /codon_start=1 /transl_table=11 /product="dTMP kinase" /protein_id="EJP72040.1" /translation="MKIISFEGIEGVGKSTQINLLQSYLEKQDFTVDVLREPGSTTSA EHIREILLNKENDISKETELLLMFAARSDLINKRIHNNDSDFVLLDRYYDASIAYQGY GRGIPLDFIENLIKLIQCPKPDVSFLFDLSVEDSFSRKKLDVKDRIESSGNSFFERVK NGYLEIAKNQNERFHIIDATKEINEIHNIIKKVLEF" gene complement(488618..489571) /locus_tag="NT01SARS_0526" CDS complement(488618..489571) /locus_tag="NT01SARS_0526" /note="identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate lyase" /protein_id="EJP72041.1" /translation="MNLFKYTAFILISLISVYAPYVAYLNHSPNTVIENIDIEIGESI SQVAFELSDHNFLDKLFLRYFIFSNKIDSFKAGEYSINNKSMKEIFVDFSSGNTVTHK LVIKEGTNIYELNEVINQSQLNNDCIMLSCIQSDFGYLEGILYPDTYFYKKGMKASSI LNLSYNRLKSSLDEMHSSYLKNNNLNNSEILILASIVEKEAGNDQEKDLIAGVFLNRL NLNMRLQADPTIIYGLLPNFDGDIKKSDILDKNNKYNTYMINGLPPSPIAVSSLSSIK SVYEGVPSDYLFFVADSKTSHYFSKTYKEHLNKIKELGLDK" gene complement(489634..489864) /gene="acpP" /locus_tag="NT01SARS_0527" CDS complement(489634..489864) /gene="acpP" /locus_tag="NT01SARS_0527" /note="identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="EJP72042.1" /translation="MSVEDRVKKIVSDQLGKSMDEIQSDSSFVDDLGADSLDTVELVM ALEEEFDLEIADEDAEKISTVNEAVEYINSNS" gene complement(489931..490644) /locus_tag="NT01SARS_0528" CDS complement(489931..490644) /locus_tag="NT01SARS_0528" /note="identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] reductase" /protein_id="EJP72043.1" /translation="MKEIIFVSGASRGIGNSIAKYFAEKGHIVLGTSRSKFKFDTQSD KLIPIQLDITSREDVKNCFKYLKEQNLLPSVLVNNAGITSDQLFLRMKDSEWDDVLST NLTGVFNLTKVFIKHMIKNKYGRIINISSVSGLMGNPGQVNYSSSKAALNGFTKSLAK EVGSRNITVNNVAPGFIETDMTSFIDADKKDEIINTIPLGRFGNADDVSELVYFLSSN EAAYITGQTISVDGGLLMY" gene complement(490641..491561) /gene="fabD" /locus_tag="NT01SARS_0529" CDS complement(490641..491561) /gene="fabD" /locus_tag="NT01SARS_0529" /EC_number="2.3.1.39" /note="identified by match to protein family HMM TIGR00128" /codon_start=1 /transl_table=11 /product="[acyl-carrier-protein] S-malonyltransferase" /protein_id="EJP72044.1" /translation="MPRHISFVFPGQGSQFVGMLDNIDSSLIATIKEDLANQFDFDLI DIINNGPEEVLNKTSITQPAILLASCLAYKQLQLEMDIKPDLMCGHSLGEFSALVASE SIDLVNALKLVHKRGIFMENCVNGSMYAILNANFDDILRVCNEVENSLGQIVSPANIN APNQVVIAGEVESVESVIKNLNDMGVKRCIKLKVSAPSHCKLMNDAAKKFESLLHETE FKNPSCQIIHNYNAKTSSDIDNMRTNLVEQLTNPVQWIKTMNNLKSFEGIIIECGPGK ILKGLGKSNDINDIISTSENDHVERIKEML" gene complement(491564..491773) /gene="rpmF" /locus_tag="NT01SARS_0530" CDS complement(491564..491773) /gene="rpmF" /locus_tag="NT01SARS_0530" /note="identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031" /codon_start=1 /transl_table=11 /product="ribosomal protein L32" /protein_id="EJP72045.1" /translation="MAVQKSKVTRSRRGQRRSHDALKSKTLSVDPVSGEKHLRHQMTK DGFYKGRLVKDLRKPIKEETEEVTS" gene complement(491829..492713) /gene="rluC" /locus_tag="NT01SARS_0531" CDS complement(491829..492713) /gene="rluC" /locus_tag="NT01SARS_0531" /note="identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005" /codon_start=1 /transl_table=11 /product="rRNA pseudouridylate synthase C" /protein_id="EJP72046.1" /translation="MSVKIVEVDVDNEGRRLDNYLISYLKDIPKSKIYKIIRKGEIRV NSSRAKPDRKIKNGDLIRIPPNLNITKTSIKSIHIKQLENLKEKIIYEDKNYIVINKD AGIAVHGGSKNYIGIIDIARKIYGRNIDLCHRLDKNTSGCLVLAKNKQSAKHFNNLIK NRLVQKTYVCVLKGNIRKSIVVNRPVYKTKNSKSKEAHSKFEKIKNLKGFSVVKVKIF TGRTHQIRIHAAMIGHPIVFDNKYGDRVLNNNLDNKLKRRIALHSHHVRFKDQDSKII DIKCKNPLDIDILIKSLH" gene 492908..494908 /locus_tag="NT01SARS_0533" CDS 492908..494908 /locus_tag="NT01SARS_0533" /note="identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757" /codon_start=1 /transl_table=11 /product="ribonuclease E" /protein_id="EJP72047.1" /translation="MKRILINSSYGDELRVALVDGAKLYDFDTESPERTLLKGSIYKA TVSRIESSLDAAFVNFGSDRHGFLPLKDLSKEFYKKDKKGKYVCTLEEGQEIIVQVTK EERGTKGAALTTQIGLAGRFLVLIPNSTRSGGISRRISGDERDQIKAALEKLNIPENM SAIVRTNGLGRTVEELSLDLSYLLALWEEINNTTPNATSPSLIFRDDKLIVRVVRDYF KEDIEEILIDDKDIFTEAKEFIEAVIPDHSDKVKFYDEDIPLFNRYQIESQIELAFQR EISLNSGGSIVIDPTEAMTTIDVNSARSTKGKDIEETAFKTNLEAASEIARQLRLRDV GGLVVIDFIDMTDEDNQNKVESAFRKAVYSDRARVQFSGISRFGLLEVSRQRLRPSLN ESYDIEHVLVRGPRSLGQSILRIVGEDAAKDNTGEIQVYVPADVASYLLNEKRYDIIN IEKTNNIKVLIIADPYKTRPYYKVVRVKKSDVKDISSYALTPSSPEPDTNWRDNKNSS KNVKPLVDGVKPPKMPKRRKAGIVKWLKTITGIEVDEKTSKKKSIKRRPRRKPQNKQK NNSKARKNYQKNNENVKTKTNKKPVSKKQQNQKKSKQKDFNKNDNKNVSKDIENTKSV KKNNEQLNVDDKKKSPIKEIVKEKKVKKEIPTRAKNDPRQTS" gene complement(494880..495692) /locus_tag="NT01SARS_0532" CDS complement(494880..495692) /locus_tag="NT01SARS_0532" /note="identified by match to protein family HMM PF00293; match to protein family HMM PF09296" /codon_start=1 /transl_table=11 /product="NAD(+) diphosphatase" /protein_id="EJP72048.1" /translation="MHFKRFFDIKGTNNNILIIFKNNKILYEPNLKTFLLEENLLDIN LKDHLFVGIANDGKDIYAVDASNSTNDFNIGYESLIEYDLRHLLAISQPNDIVLMGRA NQLLHWVRSNKYSGYSGKLNKFNEKEQAMYCTATSSMIYPQIAPCVLAMIIKGDEILL ARNNLFPEGLFSVLAGFVEVSESAEETVEREVMEEVGIKVKNIEYVGSQPWPFPSQLM LGYKCEYESGEIVIDENEIVEANWYKVDNLPYVPPTTSLSGKLINLFVEDHS" gene 495715..497220 /locus_tag="NT01SARS_0534" CDS 495715..497220 /locus_tag="NT01SARS_0534" /note="identified by match to protein family HMM PF06450" /codon_start=1 /transl_table=11 /product="Na(+)/H(+) antiporter NhaB" /protein_id="EJP72049.1" /translation="MLNEIQKLFLGDAPGWYKSTIIGFLIFNPLLLLILNITSPGNAG FVLGWILLLQFIFTLAMALKCYPLQPGGLLAIEALILGLTSTDTVYYEIQQNLKVILL LVFMVAGIYFMKNLMLTIFTKLLLSIRSKTLLSFLFCISAAVLSAFLDALTVTAVLIG VMIGFYRIYHAVVSGNSFTDQDHNYKDNSNINSLNASELEDFKGFLRDLVMHGAVGTA LGGVCTTVGEPQNLLIAGKAGWDFMEFFIQMAPITMPILITGLITCILVEKFSIAGFG NQLPPNVRNVFNDYSKYREDNITTKDKAELLIESVVLVFLVFALAFSIAAVGLIGLSV MVLLTAFKGITHEHKLGEAFHEALPFTALLAVFFAIVSVIYDQKLFEPVILYVLAQPE AVQPSLFYVANGFLSAVSDNVFVATIYIGQVAEKIPVGTDQFNNLAIAINVGTNIPSI ATPNGQAAFLFLLTSALAPLINLSYLRMVYMALPYTIILSIVGYISIANIL" gene 497220..498191 /locus_tag="NT01SARS_0536" CDS 497220..498191 /locus_tag="NT01SARS_0536" /note="identified by match to protein family HMM PF01207" /codon_start=1 /transl_table=11 /product="tRNA-dihydrouridine synthase A" /protein_id="EJP72050.1" /translation="MPREQCHKLCIAPMMQYTDMHDRYLLRLISKKVFLYTEMIATGS LVHGKCFEQLEFNNEEHPVGVQLGGSNINDLIECSKKCEEYGYDEINLNCGCPSDRVQ KGRFGACLMLEPEHVANCLAEMQNAVEIPVTIKCRLGVDHHESYEFIHNFISTVKKSG IKTFIIHARNGILKGLSPRQNRNIPPLKYDYVYKLKQDFPELDIVINGGIKNLEQSQM HLKYVDGVMIGRSAYDNPFMLKDIEKIIFNEEPLVKSKKEILNKYLDYVEIKASEGHN LPKMLKHLFGLSKGDKNAKNFRLKIIEAMKNNEVTSVRNDLEDLLVY" gene complement(498177..498833) /locus_tag="NT01SARS_0535" CDS complement(498177..498833) /locus_tag="NT01SARS_0535" /note="identified by match to protein family HMM PF04333" /codon_start=1 /transl_table=11 /product="lipoprotein VacJ" /protein_id="EJP72051.1" /translation="MFSDEVNDPFEDFNRKTFEFNEKLDEKIAKPVAEKYAKLPPNIK IGISNFFNNLEEVETFVNQMLQGKPKKSINDLTRFVINTTIGIGGFIDVASKIGLERH EEDFGQTLAVWGVGQGPYIMLPVLGPSTLRDTFGRPVSSYLSVTFHMTETDVNIALKG IDAIETREKLLGIETLLSGDKYSFVKDAYIQSMYYEIKDGIDVEDEFIDDMDDFLIDE " gene complement(498886..499566) /locus_tag="NT01SARS_0537" CDS complement(498886..499566) /locus_tag="NT01SARS_0537" /codon_start=1 /transl_table=11 /product="mrp-like protein" /protein_id="EJP72052.1" /translation="MSIKNIIAICSAKGGVGKSTITAAIALSISKQYQVGILDADVYG PNQHILFDIKDKPQFITKNDDKYIKPFISKNIEIMSMGLMTESDEAVAWRGPMLSSAV RQLSNSTKWSNLDFLFIDMPPGTGDTYLTIFKELNLSNVILVTTPNKLSHADIKKTIN LVNKFNVPIMGYIENNIFNQDKDTFSEKLSINKLGKFNFSEKMLNFDLDNDIEDADLI SKKIIAHV" gene 499602..501557 /gene="metG" /locus_tag="NT01SARS_0538" CDS 499602..501557 /gene="metG" /locus_tag="NT01SARS_0538" /EC_number="6.1.1.10" /note="identified by match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399" /codon_start=1 /transl_table=11 /product="methionine--tRNA ligase" /protein_id="EJP72053.1" /translation="MDIPTKNNRKILVTQALPYANAPLHLGHILEAVQTDIWTRFQNL NGNDCHFFCADDTHGTPVMLKANEMGITPEKLIEDVYQDHKSTYELYDINFANFYSTH SDENKKYSEFIYKCAKENKLISKSVVEQYFDETEKMFLSDRFIKGTCPKCGAENQHGD NCGVCGASYNVLEIENPVSTISNTKPVKKESEHIFFDLPAKRDMLKEFIEKVDIQESI KNKLKEWLGDDLKKWDISRDAPYFGFEIPGEDNKFFYVWVDAPIGYIASISNWANSNQ IEMEDLWSENSSYEIYHFIGKDIAYFHGLFWPALLSSAKLKLPSGINVHGFLTINGEK MSKSLGTGILAKDFAKITNPETLRYYFAAKLNNKVEDIDLNFDDYVQRINSDLVGKYL NIASRSASFLKKNKNNLSDDINAEIINSLLNKKDEIINLYEKREYSKVIRLIMDLADY VNKYINEETPWKKDEDEAVKISTTALNAFKILSIYLHPVIPNLTNEAFNFLNIIDFTF DSIEKPLTKKINNYKPLLNRLEKIIIPEEEDMDNVNLIDINHFSSVDLRVAKITKADD VEGADKLLQLTLDVGDLGTRNVFAGIKSAYKPDELTDRLVVLVNNLEPRKMKFGISEG MVLASSNDDGIYLVSPDEGAEPGMKVR" gene 501557..502594 /locus_tag="NT01SARS_0539" CDS 501557..502594 /locus_tag="NT01SARS_0539" /note="identified by match to protein family HMM PF00070; match to protein family HMM PF07992" /codon_start=1 /transl_table=11 /product="thioredoxin-disulfide reductase" /protein_id="EJP72054.1" /translation="MNKTDILIIGAGPVGLFTVFEAGLLGLNCTLIDNLDKPGGQCAE LYPEKPIYDIPGVPFQTAQEHVDALLEQIKPFNYDLHLSERVDLIEEITLENESFWKV KTTEDKEFISKNIFIAAGAGSFEPRRPPNIEDPDKYLGKGVEYAVRSVDKYKNKNVVI FGGGDSALDWTVELSKVAKLVTLVHRRDAFRGAQHTEEQMRALVEKGKVNLLTPYLIN SIEGDDIVQSITLKNFESNEIEDYEADELLFLFGLNKKLGPILDWDIDLNGKKIKVNT ENYQTNKDGIFAVGDINDYPGKLDLILSGFHETTLAVQEAYKRIYPGERVPFGYTTSN SKLQEKLGVKK" gene 502581..503165 /gene="rnt" /locus_tag="NT01SARS_0541" CDS 502581..503165 /gene="rnt" /locus_tag="NT01SARS_0541" /EC_number="3.1.13.-" /note="identified by match to protein family HMM PF00929; match to protein family HMM TIGR01298" /codon_start=1 /transl_table=11 /product="ribonuclease T" /protein_id="EJP72055.1" /translation="MLKNRFRKYLPVVVDIETGGFDPKKNAILEIAITLIEFENGNII PGETIRHHIAPFQDSIVEKESLEFTKIKLDHPLRNAINEIEALDDLFKIINKTKNKYE CSRAILVGHNAHFDKSFLDAAVERNNIKKTPFHKFSVIDTVSLGALATGQTVLARICD ELSIEYDNNEAHSAAYDTKVTAEVFCKIVNDFDN" gene complement(503162..503476) /gene="grxD" /locus_tag="NT01SARS_0540" CDS complement(503162..503476) /gene="grxD" /locus_tag="NT01SARS_0540" /note="identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365" /codon_start=1 /transl_table=11 /product="monothiol glutaredoxin, Grx4 family" /protein_id="EJP72056.1" /translation="MNIEEKLREQIKENNILIYMKGTPYEPRCGFSARTVQILIECDS EFSYVDILENNDVRTTLPKVSDWPTFPQVFIKGELIGGADIIAQMHESGELKKLIDSI NA" gene complement(503478..504221) /gene="pdxJ" /locus_tag="NT01SARS_0542" CDS complement(503478..504221) /gene="pdxJ" /locus_tag="NT01SARS_0542" /EC_number="2.6.99.2" /note="identified by match to protein family HMM PF03740; match to protein family HMM TIGR00559" /codon_start=1 /transl_table=11 /product="pyridoxine 5'-phosphate synthase" /protein_id="EJP72057.1" /translation="MKLSINLNKIALLRNARGENYPNLELYANKAIDLGVDGLTLHPR PDHRHATSNDVINLAQIAKNRSVEFNIEGNPFSKPNNSFQGFYELVKIITPDQITLVP DNVDQITSDHGWSSGDHDIDLKNIIMKLRDVSNKSQISLFIDNLNGIEYAYEMGVDLI EIHTGEFSKGIEKNDMSVLTNIQNMINLANELGLKINAGHDLNLDNLKYLVDMGNINE VSIGHAIIVDSLNFGFETTIKKYLDIIRN" gene complement(504237..504995) /gene="cofE" /locus_tag="NT01SARS_0543" CDS complement(504237..504995) /gene="cofE" /locus_tag="NT01SARS_0543" /note="identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916" /codon_start=1 /transl_table=11 /product="F420_cofE,gamma-glutamyl ligase" /protein_id="EJP72058.1" /translation="MNSLNLIALEDIPFIKPGDDIAEIIFNSINKNKVAVSDNDIFVI AQKIISKSENRYMNLDEVETTKNAEKIALKLNKDPRLVQTIINESNKIISIEKKILIV EHKLGHVCVNAGVDQSNIANDNSVLLLPENPSESSKQLQRKLSHLLNKNISIIITDSM TRPFRYGVINFALSSSKIQSLIDLKGSNDIYGNKIKGTEVALADELAAAAGLLMGQSN EKKPVVIIKGYQGINEIDKDAVNLIVKDDDDLYR" gene 505070..505240 /locus_tag="NT01SARS_0544" CDS 505070..505240 /locus_tag="NT01SARS_0544" /note="identified by match to protein family HMM PF03966" /codon_start=1 /transl_table=11 /product="tetraacyldisaccharide 4'-kinase" /protein_id="EJP72059.1" /translation="MAIIDEQLLDILVCPVTKKSLYLNEDTHELICEESGLAYPIKDG IPVMLPEEARKL" gene 505244..505323 /locus_tag="NT01SARS_0545" tRNA 505244..505323 /locus_tag="NT01SARS_0545" /product="tRNA-Arg" gene complement(505467..506375) /locus_tag="NT01SARS_0546" CDS complement(505467..506375) /locus_tag="NT01SARS_0546" /note="identified by match to protein family HMM PF00753" /codon_start=1 /transl_table=11 /product="ribonuclease Z" /protein_id="EJP72060.1" /translation="MKMYKYFVTSICLFFSLSLISETTLIILGSGTPNPNPERYGSSY AVVVDDKAYIVDFGPGSVRRMAAMSKTWGGEFEQLELQNISIAFLTHIHSDHSAGLSD LILTPWVMGRSTELELFGPPGLQKMAEHITKAYEDDINYRLYGSQPANNKGYISIVEE IENDGSIYKDKNVEVIAFKNDHGDFENSFGFLFITKDKRILFSGDTGVSDNLMNYGEN LDILVHEVYSSETFKNKTDDWQIYHNAHHTSSIDLGIIANKLKPKKLVLSHILFWGAT EESLLDDVKSNFDGNAIIAKDLMVIR" gene complement(506384..507340) /locus_tag="NT01SARS_0547" CDS complement(506384..507340) /locus_tag="NT01SARS_0547" /codon_start=1 /transl_table=11 /product="putative ORF1" /protein_id="EJP72061.1" /translation="MIKKLYLVLFLFTITHVNAHEFNPAHLVINELNDELNTYEATWM YPYKNIGTRGEVIFPDFCSVESKDLYYQGKYINEELDLTCSSTIKGSLIEITKLSVLT DALVTINFSNDETFEGLVNNKNTSILVPNKNEYLPTSYIYLGFDHLLNGLDHILFVVG LMFLVVGTINLIKTITAFTIAHSITLGLSVFNIIKLPQATIEIMIALTIVYLAAEIKN SKKYEFTPWNLAFGFGLLHGLGFAGALSDIGIENNEILLSLLFFNIGIEIGQLVLIPF IWIFIFIANNYNFYKKSVVFSSYFVGSMGAYWVISRFINLFY" gene complement(507337..508131) /locus_tag="NT01SARS_0548" CDS complement(507337..508131) /locus_tag="NT01SARS_0548" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72062.1" /translation="MKNKILVFFIIGFVLYLIDIGLNNYDDKEIFISDSEITSLITAW RSQVGRNPNDDEVARIINDLVQEEILYREALKLGLDQDDRIIKRRLAQKLSFLKQESV EKLPSSQELKDFFNDNKEKYYIEPEYTFTHYFFSSENNSFDRSNKAIKDIYGNKQINA DPFLLGKNFVDVNLNKIKNDFGESFTQSIKNMELNKWVGPIKSPYGHHIVFISNYKSG YFPEISMVLKQVEIDLLQLRRDSAIQEYLEEIQSEYKIYINPELTF" gene complement(508139..510286) /locus_tag="NT01SARS_0549" CDS complement(508139..510286) /locus_tag="NT01SARS_0549" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72063.1" /translation="MKYLRNLIILIVGLYILTLGLVYVDVYDSRPLISLFKKMQSDSA LEVVDFSVDSTKNSNSRPMPNKDRNPYYGDLHVHTKYSFDAYVFGVTASPDDAYRYAK GAAVKHPLGYEMKLREPLDFYAVTDHGFYMGMIQAYADTSTDISQNDFAEPFHNLNRL DNLTVESAGERSNIFSSVLGATIIKPYPDWHPNLLKAYFSRNTQGALRSFDYDIHKSA WADVARSANEHNDPGNFTTFIGYEFTTSTDIEGGNLHRNVIFESSKASIRPWTRIDSI NPEDLWTWQDRLREKGVDTISMPHNSNGSNGQMFEMESFKGNALDVEYAEKRMRNEPL VEITQVKGTSETHPLLSPDDEWADFEIMDVRVGSRPPTYSKPSGSYVREAYLNGLTLE FTKQGNPYKFGLIGSTDTHVVASSLDESNYWSKVGLLDGDPENRGSVPLKEENVARLE EYMRAFNQPISTVSLEQGEYANTGFTQWGASGLAAAWAEENTRESLFAAFRRKETFAT TGPRISVRFFGGYNLSSIDLNSESLVSEAYSKGVTMGADLLNNDDQIPEFIVWALRDM NSAPLQRIQIIKGWIDMNSGRPKEKVFDVACSDGLEPDPITNRCPDNGARVNINDCSI TSNVGSSELKTVWKDPEFKVDDKAFYYVRVLENPTCRWSTWDAIKSGFKPREGLHETI QERAWSSPIWYIPKQSEVEVIPLGGTIQLRNID" gene 510404..510482 /locus_tag="NT01SARS_0550" tRNA 510404..510482 /locus_tag="NT01SARS_0550" /product="tRNA-Arg" gene complement(510531..512960) /locus_tag="NT01SARS_0551" CDS complement(510531..512960) /locus_tag="NT01SARS_0551" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="outer membrane receptor" /protein_id="EJP72064.1" /translation="MNKHTYLSLFFLIIFSVSISSQDNAIEEVIVTATKTEKTLQEVP VAVSVVTSDVIEKATILDTFDLKSVIPSLDSRQYQSSTNATFFIRGFGNGSNNPGVEP SVALFVDGVYRSKTQSQISDLPMLERIEVLRGPQSTLFGKNASAGVINIVTKKPSFEE STMISAGIGKYNSRVGKIYTTGPLSDTTAYSFNANFNKRDGHSDNPVTGNSVNNRDRF GIRAELLFVPADDLSIRVTADYDEYDEICCAVGSTSYGTANVVTALFGGQIIPNDPYT EKAFFDFDPISDGDNSGISIYIEKNLENIRIESITSSRNSYNLELQDVDFESVDQIDA NRLVKDLDAVTQEFRIFSEDNENINWLLGAYYYQEDMHYDNSIYFGSLWRAYIDALAP GALAGVAAAFGIPNSMLFAEGQGVNEISKQDNKTTSIFAQLDIKVSDNLNALIGASYI EDEKTVSVNQVNTDVFSNLDFVGAGTLGLIAAGIPPAQAAVLALDPAFNPLLGLQGIQ FLPQFVNFPNAAQTGKSSDDNVDYTFKLSYLLNDKTSIYGGISTGYKATAWNISRDSL PDAVEIAALAAAGTPVGANTGTGRRYADPEESEVFEIGAKIKLPTGYLNIAVFDQKIE GFQSNTFVGTGFILANAGSQSTEGYEFDLVMSPTESIDLAISGLFMDPIYDSFPNSSA GDLTGTMPSNVSKDTISSTVTWNWNVNNWDGYFRLSHLYASEAKMLENPAWQAILEAA GNGIKTQDTLNFSAGIEKDNLSIMLWGKNINDDKYLISAFPAVADPTFTTFFGYPNAY SSYGLTVNYSF" gene complement(512997..513383) /locus_tag="NT01SARS_0552" CDS complement(512997..513383) /locus_tag="NT01SARS_0552" /note="identified by match to protein family HMM PF00581" /codon_start=1 /transl_table=11 /product="rhodanese domain protein" /protein_id="EJP72065.1" /translation="MQNKSLDDFLKEANELVPRLSFEETIDFIKNKETVIIDVREESE VINYGLIKEAIHIPRGLIEFKLSPNSPNNPVEIKENTNILVYCAGGYRSALAGKTLIE LGFPNVFNIGGFDEWINSGGEIQPYL" gene complement(513373..514254) /locus_tag="NT01SARS_0553" CDS complement(513373..514254) /locus_tag="NT01SARS_0553" /note="identified by match to protein family HMM PF00892" /codon_start=1 /transl_table=11 /product="DMT family permease" /protein_id="EJP72066.1" /translation="MELRYWALLTLLGAVWGSAFIFIKVAAPEFGAVPLVQARLIIAS LIFIPVLLRKKYLNQLRPIWKHSMLLAITNNAIPFTMFSLASFGSDSNMLAILNATTA FNTMIIAYFWLKEDVTIKQLTGLIMGFIGVVILVNPESSSTSIISAVFCLMGAACYSF STVFIQKNSAKTNKLVLIGWSIIFSAFIMMPVTLFYLPPEMPSSDAFLSVAWLGGVST GLAFLGYVRLIEKIGAVKTSTVAYFLPVFGIIWGNIFLDELITLSVIVGCATILIGVF LATSKKIKKLEGEARAK" gene complement(514518..514730) /locus_tag="NT01SARS_0554" CDS complement(514518..514730) /locus_tag="NT01SARS_0554" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72067.1" /translation="MSKIIHINDPILIEYNSSVDKESAKKMIAFKYFSNDICLLDKYL KDKDVIDNSSIAHIAFEPKSQLEFSF" gene complement(514768..515319) /locus_tag="NT01SARS_0555" CDS complement(514768..515319) /locus_tag="NT01SARS_0555" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72068.1" /translation="MFVWSIWSYLQVVDLFNLNPEREWLGSICYLPHGSRVLMVCFFG YYAIPALYLAEITGPALIDPLGYVDGWNYGAVGSLIAVAIAVELVKWSRIAPGKFSLF KPVSFKNYKYLFLVIVISALLNGVLANLIVSLVNSSVIVDVSTVFRFTIGDIIGACTL VAALWIIFTTLVDTRLIVSPEEE" gene complement(515379..515729) /locus_tag="NT01SARS_0556" CDS complement(515379..515729) /locus_tag="NT01SARS_0556" /codon_start=1 /transl_table=11 /product="sugar-specific transcriptional regulator TrmB superfamily" /protein_id="EJP72069.1" /translation="MGFNKLLYLVTLYFLMYYLLMPSKYTKDLTNILEMLWNIEKDLN LASYSETEKKVYHVIAWHLSTYGNCNITDVIQNSGFSRSTVYKTIKKFEQANLVYIQQ SQGDKREFNLILAN" gene 515815..517008 /locus_tag="NT01SARS_0557" CDS 515815..517008 /locus_tag="NT01SARS_0557" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72070.1" /translation="MISCNKNISNDSDQYLYVWMHDIGFEDPNFLAVIDADDESRTYG KLLNTIPATKTVGMAHHTPLFLPSSGMIFANDFHNSHTYVYESSNPVKPKIINDFNKI EPYSFPHSYSELPNGNILTTFQTKKGLETVGGIVELDYKGEYLRASDAQPLDETIFMR PYGIVLVPEHNRIVTTNYDMHETDNGYHIQIWNMESLELLSTVKLPNVNGMINDQNPF EGRLLTDGTTVMFQTFSCGLFVLDGVETLNPNITKVFKFADKPFCSVPVRLENYWIQT VASDSGGFNGLVVLDISDPYNPVETYRLNTGEDIGPHWLSPNVTGNKIVMTGFFKELE KKVLMLNFDSKSGELSIDDKFGIGNQSGAGFMIDREEWPHGGKGPAMAHGAIFWPSAP PDWKN" gene 517092..517181 /locus_tag="NT01SARS_0558" tRNA 517092..517181 /locus_tag="NT01SARS_0558" /product="tRNA-Ser" gene complement(517205..517867) /locus_tag="NT01SARS_0559" CDS complement(517205..517867) /locus_tag="NT01SARS_0559" /note="identified by match to protein family HMM PF01227" /codon_start=1 /transl_table=11 /product="NADPH-dependent 7-cyano-7-deazaguanine reductase" /protein_id="EJP72071.1" /translation="MDPIKRQKDNIKYGIDIWNVYDFMYLNHNKIPQLVVLEIVIPYE SDLIIESKSLKLYLNEFYKKSFSNKEVLIKKIKSQLELTIKHPIKIKVLKKFRPEPKY LDLNNTKLKKTKPNTIIKFNGFRSICPVTSQPDFANIYLYLDKSIDVGYLNKYLMSYK EHGGFHEKCIDKIFIDLYSKLKPDHIEVCGRFQRRGGIDINPIRGTKKKILFNNFREF NQ" gene complement(517921..518706) /locus_tag="NT01SARS_0560" CDS complement(517921..518706) /locus_tag="NT01SARS_0560" /note="identified by match to protein family HMM PF01061" /codon_start=1 /transl_table=11 /product="inner membrane transport permease YadH" /protein_id="EJP72072.1" /translation="MDKETNINISVTLWTLTSKEIRRFMRIWIQTLVPPAVTMTLYFV IFGSLIGPRIGSMDGFDYVQFMIPGLIMMSVITNSYANVVSSFYSVKFQKSIEELLIS PMPNWTILLGFILGGVCRGVMVGIIVFCVSLFFYPDFSIANPALTILVLFLTSILFAL MGFINAVFADSFDDISVIPTFVLTPLIYLGGVFYSINILPEFWRSISLANPMLYVVNT FREGMLGISDVSISFSLTMISIFIIFFTVSSLYLLNKGIGIRD" gene complement(518708..519619) /locus_tag="NT01SARS_0561" CDS complement(518708..519619) /locus_tag="NT01SARS_0561" /note="identified by match to protein family HMM PF00005" /codon_start=1 /transl_table=11 /product="ABC transporter, ATP-binding protein" /protein_id="EJP72073.1" /translation="MSYALEIDNLKKIYSGGTEALKGISLKVNEGDFYALLGPNGAGK SSTIGIIGTLVTKSSGNVKIFGIDLDENVAQAKSMLGVVSQEINFSQFEKVLDIVTTQ AGFYGIKKSIAQPKVEKMLKRLGLWDKRHDQARTLSGGFKRRLMIAKALIHEPKLLIL DEPTAGVDIELRREMWDFLKEINSNGTTIILTTHYLEEAEQLCRNIGIIDHGEIVVDT SMKELLRKLDVQGFVLDLEDPLKEVPTIKDYSLRLEDPLTLIAAVNKEKSINNLFDEL NKLNIKVKSMRNESNRLEELFIEMVKK" gene complement(519616..520983) /locus_tag="NT01SARS_0562" CDS complement(519616..520983) /locus_tag="NT01SARS_0562" /codon_start=1 /transl_table=11 /product="xanthine/uracil/vitamin C permease" /protein_id="EJP72074.1" /translation="MNVEQVKINGIKWGPFRLRIPFIHIKFRTAEFLQGMIISGATAF AGIPIAMGMGLSFEEGVALSFISGTLIAAGPIVFGVPFAPGWITPAYPIVIGVFATMG FYLPTGAEYQVETFQFMAAICIEFTILVAFLGMTGLSEKIVNNIPNALKSGIILGAAV AAFYQVFFKEFDAKYMDQPIAMTIAIVLCILTTFSDPFKKLASKNVFFQKISSLGLLP GFLIAAVVAYSIGEASLNVTWGFAFPDVVTLFERTSPFSIGFPSLSMYLDAIPLVIIG YIILFGDIITGQEILNDAQKQRPDEPLKVDSNRFHLSIAVRNLIGLIFNPNFPTQGAL WTGVHVVVAERWKKGPNEMPSIFDGLGSYYLMAIPFLYVTLPFITLMEPLMNIALNLT LVLTGFACAYVALAIPKTNAEMASALFISLLIAFTGEYVWLGLLIGIFLSIFVVGKQT SSNQS" gene complement(520980..522155) /locus_tag="NT01SARS_0563" CDS complement(520980..522155) /locus_tag="NT01SARS_0563" /codon_start=1 /transl_table=11 /product="von Willebrand factor type A domain protein" /protein_id="EJP72075.1" /translation="MLINLFQTIRSAGVPCTLRELLDLLGALENQLVYADLDDFYYLS RATLVKDEKHYDKFDKAFDIYFKGIEKLEDVFQALIPEDWLRKAFEKELDPDELKKIQ SLGGLEKLLEEFKKRLEEQKDRHEGGNKWVGTNGTSPFGHGGQNPEGIRVGGEGGQKK AVKVWEQRQYSNLDDSVIIGTRDIKMALRRLRKFARQGNDLELDMDDTIKSTAKNAGY LDIKMVPERLNSVKVIVMFDVGGSMDPYVKLCEELFSAIKTEFKNLEYFYFHNCIYES VWKDNRRRTQERFLVQDIINKFSSDYKIIVVGDATMAPYEITNAGGSIEHWNEEAGHV WIKRLSDHFENMAWLNPVPDDHWDYTSSICILRDLFEDRMYPLTLKGLEDGMADLSK" gene complement(522156..523007) /locus_tag="NT01SARS_0564" CDS complement(522156..523007) /locus_tag="NT01SARS_0564" /note="identified by match to protein family HMM PF00004; match to protein family HMM PF07728" /codon_start=1 /transl_table=11 /product="ATPase" /protein_id="EJP72076.1" /translation="MQFKGTKDYISTDDLSMAVNAARSLERPLLVKGEPGTGKTLLAI EVAKALKMDLIEWHIKSTTKASQGLYEYDAVTRLRDSQLGDERVKDISNYIKKGKLWE AFTSDKQVVLLIDEIDKADIEFPNDLLQELDRMEFFCYETGETIKAKHRPLIIMTSNN EKELPDAFLRRCFFHYIQFPDRETMNQIVNVHYPKIKKKLVKEALEIFFDLRKIPGLK KKPSTSELIDWLKLLLSDDMPDEILKNADSSKAIPPLYGALLKNEQDVQLLERLAFMS RREANSK" gene complement(523017..523868) /locus_tag="NT01SARS_0565" CDS complement(523017..523868) /locus_tag="NT01SARS_0565" /codon_start=1 /transl_table=11 /product="putative diacylglycerol kinase catalytic subunit" /protein_id="EJP72077.1" /translation="MNHFEKFQEALEIEQKSENTFTLIPNTNYFVGNTPHGGYLMAVM HRALTNVLPHSTAISSSVQYLDRIDPEPITLEVETFKAGRGSSSGIVKLIQNNRVCTT FTGTCSDFNHMKGFDGLETALPKIFNDKDKSDYVALNYDEITKGFTPSFIHQLECSIH PDHVWWKREKNTDSSQYDARCSAYLKMGGGKPDQFCLSFYSDILPPVVCNKYGALGWV PTITLTTHIRQLPTTEDIYADFKATDINKGYFEQDCNLWDLNGNLVASSRQLTRILKS EEKLSQQ" gene 523917..524699 /gene="tatD" /locus_tag="NT01SARS_0567" CDS 523917..524699 /gene="tatD" /locus_tag="NT01SARS_0567" /note="identified by match to protein family HMM PF01026" /codon_start=1 /transl_table=11 /product="deoxyribonuclease TatD" /protein_id="EJP72078.1" /translation="MHTIFDIACNFTNERFDKDLNDVISRSFDNNITKFGLICSQLKD VQRIIEIKDLYPDSIYFTLGVHPHNSNEINEFSLQDLHDFIKKFNPNAVGETGLDFYR NLSTYEEQTFAFEEQIKIAIELNKPLFLHQRDSHDEFMKIIKKYSSDIPKAVVHCFTG TQSQLDDYLELDFYVGLTGWICDEKRNIDLRKAIKNIPLSKLMIETDCPYLIPKNLPN KSNRNEPSNLNHIANEIAFLMEVDEDSLRKETYENSVNFFDA" gene complement(524696..525799) /locus_tag="NT01SARS_0566" CDS complement(524696..525799) /locus_tag="NT01SARS_0566" /note="identified by match to protein family HMM PF02515" /codon_start=1 /transl_table=11 /product="alpha-methylacyl-CoA racemase" /protein_id="EJP72079.1" /translation="MGPLKDIKILEFSGIGPGPYCGMLLADLGADVIRISRKETQGLE SKYDVHNRSKRTITADLKNKATVNELLRLIKQVDVVFEGFRPGVMEKLGLGPEVCLEA NSKLVYGRMTGWGQDGPMSQLAGHDINYIGLSGALNAIGRKDSTPTPPLNLIGDYGGG GMHLALGIVSGLIHSMKTNEGQVVDSAMVDGSLSLMSFFYSLKEMGHWQDGRESNLLD GYAHFYDTYECKDEKYIAVGSIEPQFYSELLKKLEITDEIFQDQHNKDNWPKLKEIMA QKIKLKTRSEWEKIFSDSDACVTPVLDMSEAQTNAHNLSRNAFTEVDGFNQPSPSPRY SKTKPEIRHNAKKIGTDLEDICKEFDLSIDVFN" gene complement(525809..528277) /locus_tag="NT01SARS_0568" CDS complement(525809..528277) /locus_tag="NT01SARS_0568" /codon_start=1 /transl_table=11 /product="integral membrane protein" /protein_id="EJP72080.1" /translation="MRIDIKNLASFLLEKYLLVLFITFLVTITSAVGLNNFKLDASSD ALVLESDESLKTYREAEDEFGDSSFLIVTYEPNKELFSDYSLNRIANLENDLKNIDGV DSVLSILDAPIFFQPRVGLTEVADNLKDLTDENINLTEAREEIINNPIYKELIISNDG KVTAMQVVLRGNDEYDELISQRYNILEKLDSKEILTSKNKSALYEELSEINKRISQLN NDESEFSKSLISEIRLILDKYRDEATIYLGGPSMIATDMMDYIESDLVVFGSAVALIF AIMLYLFFGSFWLVLLPLSNAFMAAFITAGFLGFMDWKISVVSSNFIALLLILTISLT VHLLVKINEIKKEADYKDAIIKGYDQMFAPCFFAALTTAVAFLSLTFGELKPVIEFGK MMAFGITIAFILTFTFLPCLLYLIKNISGKDYLSLYKITNFLLNFSKKYQKSISSTFF LTFVLLCFGISKLEVENRFIDYFDKDTEIYKGMYEIDSKLGGTATLDIIISQPEDDFQ SIEIEDDIFDDDLFEDETSSAAGYWWNIYSLNELEKIHDYLDSIPEIGKVLSVASGVK LAREINNGEDLNDLELALLRSVLPEDIRESLLYSYINKDDSVVRISTRVNESASELNR NDLLKKINNDLQNKFNLDPSQFEITGLAVLYNNMLQSLFKSQVGSLMIVFAVISLMLL IIFRSFKVMIIGLIPNVFVASSVMGLLGLLNIPLDIMTITVAAISVGMAVDNTIHYIY RYKKELKNTGSVNEALCNAHSTTGRAIFYTASTISAGFLILSLSNFFPTILFGFFTAI AMILAFLSSLTLLPNLLAKHKIFQ" gene complement(528277..528579) /locus_tag="NT01SARS_0569" CDS complement(528277..528579) /locus_tag="NT01SARS_0569" /note="identified by match to protein family HMM PF01722" /codon_start=1 /transl_table=11 /product="protein BolA" /protein_id="EJP72081.1" /translation="MGKIENTIKDLLNTEFNPATLIIENESFMHNVPENSESHFKIIL ASDCFKDVSNVKRHQLIYKSLENVMNKIHALSIYAFDLDEIEKNPSVIDSPNCANK" gene complement(528597..529049) /locus_tag="NT01SARS_0570" CDS complement(528597..529049) /locus_tag="NT01SARS_0570" /note="identified by match to protein family HMM PF04982" /codon_start=1 /transl_table=11 /product="HPP family protein" /protein_id="EJP72082.1" /translation="MKIFNEKIKTIVISSLGAFLCIYAIAYLNLIDETNVWLIPPFGA SLVLVMAVHDSPLASPRNVFFGHVLSASSGVMIYYFFGDAPIAIALGLSFAIILMIIT NTVHPPAGANPIIAILGAKSFEFVIMPVAIGASFIVIFALIYNKIWKR" gene complement(529062..529253) /locus_tag="NT01SARS_0571" CDS complement(529062..529253) /locus_tag="NT01SARS_0571" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72083.1" /translation="MSDNKSIETIANTLISQYGDDAEAVAMLRAAEYAADLNNEEWIK WENIIKKIHSMNESPKLDG" gene 529325..530245 /locus_tag="NT01SARS_0572" CDS 529325..530245 /locus_tag="NT01SARS_0572" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72084.1" /translation="MNVLWVKDNNIGHEKQVDVLLKELSKKLNLKIDSRIVKNSFLFQ KKIDNVKSNYYDILIGAGHKTHSILLKNKKNQKKTTKVIAILSPTFYKSKFDIICTPS HDKHKFNSKDNVIFYEGSLVTVSLKETREDVVMIAIGGKNKHYIFDQDHIYDQMEYFL SINSNKHCYIFNSRRTPREISKKISSQYKDNERITFVDFYDNRSNISIEEIMHQSQSK LITRDSVNMVYESLSCKGDTYLFNMHARRGSNKVVENINTLIKNRKIGYVDCSELTKG FSKMKLEKQNIHNDVFAEVEKVAYEIQNKL" gene 530242..531216 /locus_tag="NT01SARS_0574" CDS 530242..531216 /locus_tag="NT01SARS_0574" /note="identified by match to protein family HMM PF00534" /codon_start=1 /transl_table=11 /product="glycosyltransferase, family 1" /protein_id="EJP72085.1" /translation="MKIVHFVLSDSFAGIEQHVDEVLTNFSSHKLILICNESIASYFD KSINIYKVKNFGRRSFFGKYQLKKLIKDIDPDIIHTHGSKTSSIISSIKTKNYKHVAT IHGVKKNKKIYEKADLIIGVSDKALEGINHETICINNWWHPKLKKIQNKKNKHALAVG RLEKVKGFDLLITSWKNIDTNLVIIGSGKERNKLNELIEQNNLSEKVKIIDAVKKEEL LNYYQDASVLIISSRDEGGPRVALEALYLEIPVISTDVGHMSQILPKELLAEKNNQSA LQDMLEKYVDNIHLYNQKAIFNFVEREFSIEEKMQELNDAYSLLASKS" gene complement(531189..532289) /locus_tag="NT01SARS_0573" CDS complement(531189..532289) /locus_tag="NT01SARS_0573" /note="identified by match to protein family HMM PF00534" /codon_start=1 /transl_table=11 /product="glycosyltransferase" /protein_id="EJP72086.1" /translation="MSKFKVIQLLPELNIGGVERGTKDFSKVLVERGHDSLVISNGGI FEKDIIEDGGKHINLPIHKKSLFSIRYASDLRDIYLSEKPDIVHVRSRMPAWINYFAY KKLSHKPLLVSTFHGLYSTPLYSQVMSKVDHIIAISKTVKDYIQSTYKVPNEKITVIP RGCDPEIFNKNPVEETWIKKWYEEFPQTQDKIILTMPTRISKWKGVDSFIDLVNLLDD DNYHALIVGPTAKSKKSYLKQLQNKISNYGIEDKITITGSRNDISNIYKISDFVFNLS IKPEPFGRTTIEAISSGSKVIGWNHGGTKEILEELYPDGLVELDNIEDLAEKVINLSN MTNNMPKENIFTSERMTNQTISLYQDLLAKRL" gene complement(532282..533490) /locus_tag="NT01SARS_0575" CDS complement(532282..533490) /locus_tag="NT01SARS_0575" /note="identified by match to protein family HMM PF02687" /codon_start=1 /transl_table=11 /product="macrolide export ATP-binding/permease protein MacB" /protein_id="EJP72087.1" /translation="MLVEESIKSAISSIKTNRVRSFLTALAIIIGTAAVIAVIGIGSS ASKALEEDIDELGPRTLSIFPSQRKRGGVSSGFNPLVIKDAEALAKNTEHNWMIAPAM SGNRQVKYQNNNISGEINGYLPINFKVRGFDLGHGRLFTDKENLGRKKVVVLGSKVPG ELKKSVKDILNQDILIAGTSYRVIGVLEEEGSTGWQNPDDDLYVPLLTASQRIFGTDR LGWINVGISNDTNVDYVMMTIEEILRQKHDIGPGGENDFRINDWSQFSDLRRQATGIF TALIAGIAGISLIVGGIGVMNIMLVSVTERTREIGLRKALGATHKSIMMQFIIEAVLL CVLGGLIGVFIGTSLLYLFATFNDWPFAMPISAIIGSITFSALVGLFFGIWPAKRAAQ LDPAVSLRYE" gene complement(533490..534680) /locus_tag="NT01SARS_0576" CDS complement(533490..534680) /locus_tag="NT01SARS_0576" /note="identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730" /codon_start=1 /transl_table=11 /product="putative macrolide-specific efflux protein MacA" /protein_id="EJP72088.1" /translation="MTKTLTLTFIVLMIVACSGTDQSKETQFYKKQQTVAETLEVSIE ASGVIEAISSVEIKSKASGEVLFLGAEVGDFVTKGSMLAQIDQRTANNIVDQTKSDLE ASKVRLLNAESQFERGQELHANASISDKDFEDIKENYAQAKSTLVRNEVSFENAKISL DDTVVKSPIDGTIISRPVEVGQVISSPTSAFGEGSILMTMADLSKVRVRALVDEIDVG KVSIGQTVSIKVAAYRDKEFIGTVSKIEPKAYVQQNVTTFPVLIDIDNDENLLLIGMN TDVVIEVLKKDVAMSVPTMSLRTRKDIYTAASIINIEKEEIDKFLAEKVKGENFNRFI VITDSRKGPNLTWVKVGVSDLVNVEIVEGLSSDDIVYILPSKSLFDYQERFKKRVSGT FGFG" gene complement(534673..535359) /locus_tag="NT01SARS_0577" CDS complement(534673..535359) /locus_tag="NT01SARS_0577" /note="identified by match to protein family HMM PF00005" /codon_start=1 /transl_table=11 /product="macrolide export ATP-binding/permease protein MacB" /protein_id="EJP72089.1" /translation="MIINVKDIKKSYTVGTQEVNALRGINLSVEKGEFISIMGPSGSG KTTLMNIIGCLDTPSSGEYELNGSLVSKLEDDELARIRNKEIGFVFQSFNLLAKNSVL ENVMLPLKYAGFEKSEAVKKSNEVIDKVGLSDRLAHTPAELSGGQQQRVAIARALVNK PSIIFADEPTGNLDSKTGKEVMTIFKELNASGQTIILITHEESIANQSNRIITIKDGL IKSDNRGTHD" gene complement(535377..536597) /locus_tag="NT01SARS_0578" CDS complement(535377..536597) /locus_tag="NT01SARS_0578" /codon_start=1 /transl_table=11 /product="putative TPR repeat protein" /protein_id="EJP72090.1" /translation="MFRLLFLIALLQFHQPVFSTEDTVSQAVARYLTRIHKYMEDEDW INAKRELEVTARRYFKNEDSYERALINQLYGQFYALQRDYKNAIPWFEKAIAKGRLPF AADLQVSYSLAQCYFQTGRYKDVIATLENYRDKASKRGQNMAPIQLMLLGIAYYQEQD TLNAYLNIAEANATATKLNEEWLQYEFALAVKLEKYDDAVRVGQFLIFVNPEKKSYWK QLSGVYYGSESEELSLAGLELAYENEVLDKEKDYIDLARYFMYKELPIKAVDVLNNGI SIEKVKKTRKNYEFLADAYFLSKEKVQGIDALIKAESIESDANLSYKIARFAFENEDW SKSINYFKQAKDQGYDKYPGRLELLLGISYFEISQYQQALVYLNESLEIDQSTSAAEG WINYINDILGTQNT" gene complement(536590..537261) /locus_tag="NT01SARS_0579" CDS complement(536590..537261) /locus_tag="NT01SARS_0579" /note="identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352" /codon_start=1 /transl_table=11 /product="periplasmic protein TonB2" /protein_id="EJP72091.1" /translation="MTTNIAEIRSKLLKLVSSDDNRAFVVVASIIITIIIFLIIQSLI SRSANLDQKEKNPNLVEFIRINQDDNLQERTRQIPEKPPQPKRPPQPEIELDDKTPPP VQQFDLDLPDFNLPTDFSGAFLGNINDMGRGTSQLIPLVKIAPRCPSEAAMGGINGSV VLELLVNESGRVETIKIKQARPSRIFNKEALKAVRRWQFKPKSVDGVTVPQLGLLTVE FVCDV" gene complement(537251..537655) /locus_tag="NT01SARS_0580" CDS complement(537251..537655) /locus_tag="NT01SARS_0580" /note="identified by match to protein family HMM PF02472" /codon_start=1 /transl_table=11 /product="biopolymer transport protein exbD2" /protein_id="EJP72092.1" /translation="MRRKRKNISDENPLDLTPMMDIVFIMLIFFIVTTSFVKETGVDI SRPNAETAERDEKGNILVAITENNEIWIDKRRVDLKAVRANIERLKIEYPEGSVIIQA DTLSKSGLLVETMDQIRLAGIQNISIAAKNDN" gene complement(537652..538161) /locus_tag="NT01SARS_0581" CDS complement(537652..538161) /locus_tag="NT01SARS_0581" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72093.1" /translation="MLDELFIRGGPVLYILFGLTFLIFTLLVDKYLFIFVQSKTWVNA KFTSFVNSNPPSSTKYKFVEATLISNVKRKTASNIKVLDGLIGMTPMIGLLGTVYGMI EVFEVLSFMGTGNPRAMSSGVAKATIPTMAGMVISLFGLYFRQDLNQRMDKIIINLRD SLKSEGYQL" gene complement(538164..539495) /locus_tag="NT01SARS_0582" CDS complement(538164..539495) /locus_tag="NT01SARS_0582" /note="identified by match to protein family HMM PF01618" /codon_start=1 /transl_table=11 /product="biopolymer transport protein" /protein_id="EJP72094.1" /translation="MNIKLIAILLSLPLFLFAQENDSEEEVPIPIEEQRNNKIKALLD VVKENKSIYVQKDQVRVKNFLDLVDERESMLAKAKQDLANEKLRNERLEARFEANEKQ LAELEESLQIKIGVLGELFGVTRQFAGELLASTEKAVTFSEYPDRGGVLRDIGETQVH SLDQLQNLWISYLDEIVSSGEVKTIDANIIDKNGESITGEIVRYGHFTTTYQNKFVTP VPELNGFELLQRQPEREILKNIRRHQRSDDYRITSIDPTRGFLLSLYLDKPGWIDRIA QGKSIGFIIILIGISGFVFSIYKIYQLREQEQDIIADDARVKIEMENSIKNTTSYESK ENILDEFIINYTGKLEWGANWVKFFAAVAPLLGLLGTVIGMIETFQAITLFGTGDPKQ MAGGISQALVTTMLGLIVAAPLLGLYTYISQKVSNLSQVLEEKASYLLAQD" gene complement(539497..540252) /locus_tag="NT01SARS_0583" CDS complement(539497..540252) /locus_tag="NT01SARS_0583" /codon_start=1 /transl_table=11 /product="putative TonB system biopolymer transport component" /protein_id="EJP72095.1" /translation="MKNTLKFSAITFIFSIGVLAQEIVDETLNTQVDANIPGVVAQKE IDNLDEQAKKLYYEFKDTVSEYEGLKRYDDQLEKIVFSQEDEIRDIIRQIDSLDNVNK EILPFLKETVDSLRKFINLDMPFLKESRIARIDDLDSIILQSNVTTAEKFRKVFEAYQ LEAAFGNTIETYPGFIELDDQTITVDYFRIGRLGWYYRSANGRETGYWDKFNEAWVHT NGKLNDEIKLALDIANRQTPPNFISLPVQPVEK" gene complement(540378..543494) /locus_tag="NT01SARS_0584" CDS complement(540378..543494) /locus_tag="NT01SARS_0584" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="outer membrane receptor protein" /protein_id="EJP72096.1" /translation="MNNKLFLTLFFAFTLSLNVFADNPGEEVVEEPVVAEESTETESS SDDSSSDDAPAPVTTSDDDEVVTLQKVVVTGSRIKRTDVQGALPTIVITKEDIDASGF RSVTEALQSLPQANAYRQDEQNVNTFTPNANEIDLRRIGPGRVLYLINGRRTADYPLP YNNASNFVNTGTVPRGLVDRIEVVSQGSSAIYGSDAVTGVINIITTTGKDFSEIEANV SVTEHGNDMISSLTFSTGGFTESSSWTIGIDATQVDPMYLSDREGFDDWTDGPDYSTT YMNPRWGAAVQMAGFGADTASYRPADFGGPACNSNELSGGVFRDFSRDKPEIYGITNY PGSYQGYVCMYGRGANGGDTQTIVNEREDVTVMGTFTHNFDNGIQMDARLFYYEDTAY LRSNVSRYVSMGDYLDPVGILSTVQSNDLVPIQFGQQITYSLRYFTPAMGEAFESKSD YTEDVTDLFVGFSGVFDNGFEWQAGVNATEYNALITRKTLTSGIRDYMAGVGTTCEDS IRPDGLCYGSYWAYNFGPAYELWDAYAEYGRNGGPCGVDVFYGRNNCWRPDLLYGAIS PEQFDSWLADDSTDSASEQMLIDFTMNGEIGDIKGAPIGFALHAEYQTQEYFITPSAG RLDDEQFGGDNAIDFIQGSTRYGGGDRDRYSVGVEFSLPLADNVEMGIATRYDKYDDD SSNVGGKVSSMMNLAYRPTEDVLLRASASQSFRAPDMHRVYAGSSSAFYGGITDSVAC FLDAGGSSTNSIGPGLYQFCDAQYTATRRGFTGGNTELYEEQGTNYSFGIVTELAENV SFQWDAYQMVLEEAVRSGSYQELVHQQGVCLYGDAFLEFLDGNLPPADCNQVSELLVR GSTTDPITGAALSIGPIVSGTMYPYNQTKLEFIGHDSYLTWTKETENAGDFRVSLASS TIVRVNRQEYASSPEVDLLEYFIYEPRSQQNMTVSWSREDHGLTLFADRLGHMNMYRG EVSDPHITYNMSYGYDYSPDINLYLSVRNLTDVMPQKDGGFGYPYYYQGVFSVFGRYA SAGFNYRF" gene 543780..545843 /locus_tag="NT01SARS_0585" CDS 543780..545843 /locus_tag="NT01SARS_0585" /note="identified by match to protein family HMM PF00326" /codon_start=1 /transl_table=11 /product="peptidase S9 prolyl oligopeptidase" /protein_id="EJP72097.1" /translation="MFKNVTISFLLLFSFNVASEEFYELPNEVWSCWGDTPTFSISPN GKYLAIMRSPREDVCDIEQDKIKGVEDEMTYQSLTFIDLETMQSRVFSDGVGEKSIYG FQWVSDDRFIYRPGLTNAKGRNMNSLVTFAVNVDGSKRKIIGKQEMKGGQGSWTNISV VDRLDADPDHVIVTSNERRAFRSDFYKMNIMTGKKKLLAIGFVPKNAKGDRVYGTYRD QDGYPIATLVDESLDRVIYTYNKDTQDWSEHVRFTCQQPSFTPIAATNKGWLVTGSKF SPSGELIEYNDTNALYLYDPETKEFSEKLYQDPNYDVGGFTGTCRNASGSAGVDYDTR ELLYVTYEAQEPVNVYFDEEIAQIYNGLEAVFPNEWVRPVTRDKDRNKMVIRVSSPSN PGDYYFYNRETAQIIPLYNYAPWIDRKIMAETIPVKYTARDGLVIPAYLTLTKKKTER NYMIVLPHGGPNTKQGIGFDWWTQFFANKGYNVLKMDFRGSTGLGTNHYVLGNTQWGK KMQDDITDGVLWAIENGYADKDRVCIAGASYGGYATMAGLTFTPDLYRCGINSVGVVN QQKLLENYTSKSSVFNSWEDEAKLEWGNLSSEEGKKYADETSPSLYVKNIKAPVLVLQ GTNDRIVPPEHARELIRKLEKEGKTYMSMFQAQEGHCVKCRGELATLEYFDIQEEFLE KYLEN" gene complement(545845..547002) /locus_tag="NT01SARS_0586" CDS complement(545845..547002) /locus_tag="NT01SARS_0586" /note="identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028" /codon_start=1 /transl_table=11 /product="glutaryl-CoA dehydrogenase" /protein_id="EJP72098.1" /translation="MELQDILLFNDQLSEEELIIHRSAREYCQQELLPRIVDANRNET FDIGIYKEMGSLGFLGAPIKGYGCAGTNYVSYGLIAREIERVDSSYRSAFSVQTSLAM HAIYEFGSEEQKDFYLPVMAKGDKLGCFGLTEADAGSDPASMKTKAIEKDGGYVLNGS KNWITNSPIADVLIIWAKDEQEILRGFIVDRDSKGLSTPKIDGKFALRASTTGQIFLE DVFVPKDKMLPNVQSFRGPFSCLNMARYGIAWGAMGAAEFCWEASLNYSLERVQFGKP LAAKQLVQKKLADMQTEITIGLQSVLRLGRLIDDNKMKPEMISLLKRNNCQKALDIAR VARDIHGGNGISDEYHVIRHCMNLEAVNTYEGTSDIHGLILGKAQTNHESF" gene 547275..547856 /gene="tdk" /locus_tag="NT01SARS_0587" CDS 547275..547856 /gene="tdk" /locus_tag="NT01SARS_0587" /EC_number="2.7.1.21" /note="identified by match to protein family HMM PF00265" /codon_start=1 /transl_table=11 /product="thymidine kinase" /protein_id="EJP72099.1" /translation="MAKLHFFYSTMNAGKSTALLQSNHNYLESNLKTILFLPEEISKK SDKKIVSRIGLEAEAIPIDKDFNFFDYIKDQDHKSLSCVFIDEVQFLSKEQIQQLGRI ADEINLPVMCYGIRTDFQGKLFDGSSELLAIADNLIELKTICSECDKKATMVVRLDSN GKVLLEGEKVLVGGNDIYKTVCRKHFRDLTKLI" gene 547865..548878 /locus_tag="NT01SARS_0589" CDS 547865..548878 /locus_tag="NT01SARS_0589" /note="identified by match to protein family HMM PF00107" /codon_start=1 /transl_table=11 /product="prostaglandin reductase 1" /protein_id="EJP72100.1" /translation="MANINRKYLLDKRPTGMPEDECWKLVEEETVPLKSGEILIQVKF LSIDPYMRGRMNDGVSYAAPAKIGEPMTGETAGTVVESKSDVYKVGDNVCIHKGWQTL IKAKDTDPSIYKVPLSNIPLSAYLGAVGMPGRTAYFGLNKVGKPKKDETVVVSAASGA VGSVVGQLAKMHGCKVVGIAGGPEKCSFVKETLGFDDCVDYKSENFEDALSNACKNGV DIYFENVGGPVTQAVSKLLNDDARVPICGFISQYNEENMIEADTPFKILGKLDKKPEH RFFVVTEWMNEWAEATSILSDHVMNDKIRYEETITDGFENAPQALRDVLTGKNFGKQI IKI" gene complement(548875..549642) /locus_tag="NT01SARS_0588" CDS complement(548875..549642) /locus_tag="NT01SARS_0588" /note="identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654" /codon_start=1 /transl_table=11 /product="PhzF family phenazine biosynthesis protein" /protein_id="EJP72101.1" /translation="MKHEIFYVDAFSNKAFTGNPAAVIFQHFDEKIMQQIAAENNLSE TAFIENNHIRWFSPTIEVNLCGHATLASAFVYFNYIDNAATSIEFESASGILKVNKRS NIYELDFPKDNFQQIDAIKSIEIATGVKPLETYIGDINMFAVFDRGTNIKDIQPNFDE IKNLDGQGLIISSTDDEFDFVSRYFCPKYGINEDPVTGSAHTTLIPYWAEKLGKDKLH AKQVSQRGGELFCENLDNRVLIGGEAKIYMRGEIELN" gene 549693..551063 /locus_tag="NT01SARS_0590" CDS 549693..551063 /locus_tag="NT01SARS_0590" /note="identified by match to protein family HMM PF00206" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="EJP72102.1" /translation="MMKNLLSVLLIFSMSVVTDETKDIAYIYSYDNTNQIVMNIEAAL ARAQASQGIIPEWAAEEITKKAEVRYMPKTEVDAENEFVRHRLVSRLNVWKRSLDNGA EEYLHYGATTVDIFDTVLVLQIKASLGILIDDLIEIENLLLKLTKDNIETYMAGRTIG QHALPITFGKKTSTWLAENRRNIERLKAVEEKINRSVILKGAVGTYLGLGPKGIETEL LMSQELGLGTPYIADWHGVRDVFAEYALTLALISKSFGRIGDELTLLQMTEIGETLEN LGFKAIGSSTMPHKKNPRGPGNLVNFSRIIPRQSEIILDDMVNSFERDQPRSDETLKD ISITAELMTNTAIRLLNELEVNKDVMRKNLNITNGLILSQRVTYFLADIIGKDTAESM IHDIAMKAIAENISLSDAIKNDKIASQYFTDQDLKNLLDPETYIGLAIEQVEIIINQI ESNRLD" gene 551127..551729 /locus_tag="NT01SARS_0591" CDS 551127..551729 /locus_tag="NT01SARS_0591" /note="identified by match to protein family HMM PF01786" /codon_start=1 /transl_table=11 /product="alternative oxidase 1c" /protein_id="EJP72103.1" /translation="MQILDKISRENISDAFALSMTKFFRFIADTFFAKRYGHRAVVLE TVAGVPGMVAGVWMHFKSLRKMKVGYGEQIREMLAEAENERMHLMFFIEIAKPNYFER FIVLFSQMIFGLFYLFMYVFFTRTAHRMIGYFEDEAVKSYTEYLEMVESGKVENIPAP KLAISYYGIGSDSKLSDLIRCVRADEEHHSETNHNYADNL" gene 551772..553220 /locus_tag="NT01SARS_0592" CDS 551772..553220 /locus_tag="NT01SARS_0592" /codon_start=1 /transl_table=11 /product="flavin binding monooxygenase" /protein_id="EJP72104.1" /translation="MHKDVVVVGAGISGIAAGYNLKKSCPNKSFSILEGRENIGGTWD LFKYPGIRSDSDMHTLGFRFKPWIHDKSIADGPSIMEYLHETIEEYELKNDILLNHKV SSANWNSEKSIWELKINVNGKFEDMTCNFLFLCGGYYSYTKPHMPAFKNQENFLGKIV HPQFWDESLDYKNKKIVVIGSGATAVTIVPAIAELAEHVVMLQRSPTYVVSGPSEDSI NKFLRKILPTKVTYFLIRWKNILYQSFTFYMARKYPERTKNRILELAKNEIGSNEVDN HFTPSYKPWDQRICLLPDSDLFKSINNKKASIVTDTIKEFLSDGILLDSGKKVEADII ITATGIELNALNDINVSIDNEKVNPNERLTYKGMMLSGVPNFAISFGYVNASWTLRAD LTCEYVCRLINLMDKKGVSCCEPIDDKTAYGDDQLIDFTSGYFQRGLNQMPKQGNKAP WKNYQNYLKDIFAVRLFSINDSNLDFYNSKRN" gene 553268..553747 /locus_tag="NT01SARS_0593" CDS 553268..553747 /locus_tag="NT01SARS_0593" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72105.1" /translation="MKNKFILLTTLLITFSGITFANPTYENAESLIQKMWDSFIDGDI DAFSQTMSKDEDMVTFGTDASERWDSWQELEDSVALQFDAFDVISVERKNKSLKISNS GNTAWFSETVDWEFLSNGKTEAVKDIRYTGVMEYRNGQWKIVQFHCSVGVAGQVIEY" assembly_gap 553826..553845 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(553929..554369) /locus_tag="NT01SARS_0594" CDS complement(553929..554369) /locus_tag="NT01SARS_0594" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72106.1" /translation="MIMKYFLLVTFSIFSFADDHVISTEFSDCKGKVANYYVSKIIPG GSVEGMMKASEMHQNFYDEQGANVKVYPALQYLRTDEGTEEELYRISTMVVWDSVNSW NEWRESVEALSEEDREVADKQYYAFVEMYNKNTEVVTERRWCML" gene 554575..555357 /locus_tag="NT01SARS_0595" CDS 554575..555357 /locus_tag="NT01SARS_0595" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF09423" /codon_start=1 /transl_table=11 /product="alkaline phosphatase" /protein_id="EJP72107.1" /translation="MERRSFLKFFVLLLASLSLKLRSKNNKSEDIFFNHGVASGDPTH TNVIIWTKLTKSSNSSIQVNWEISDNIDFINIINQGQTEASGYNDFTVKVDVKIPKQY NGISVFYRFSCNNQFSDIGKTITLPFYNPDEFNIAFCSCSNYPAGFFNAYKEIANNDE IDLVLHLGDYLYEYDKNGYASENAAELDRVSIPSNELISLRDYRLRHAQYKSDKDLQL LHKTKPMIVVWDDHEFTNNTWKNGAENHSLDEGIFYERKINA" gene 555350..555550 /locus_tag="NT01SARS_0596" CDS 555350..555550 /locus_tag="NT01SARS_0596" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72108.1" /translation="MLKGXXXXXXXTAWFAETVDWEFLSNGKTEAVKDIRYTGVMEYR NGQWKIVQFHCSVGVAGQVIEY" assembly_gap 555362..555381 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(555754..556647) /locus_tag="NT01SARS_0597" CDS complement(555754..556647) /locus_tag="NT01SARS_0597" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72109.1" /translation="MKYTQILFSLIILIFAFETVAQSKKPVIGIGDMRSSVGGDVNTF RAMLETALANTNKFDLIERSRIGDLISEQALSSGGITQGNGQIGGISGVDYLVYGSIT KLGVETNEFNLGDYKSASADGVMSVDLRVVDVSTGSIKISETVEVESSVASAINIDGR SIGGDEADPLSTVQRIAATKIAGKISLSIFPIKVINVKDDTVYLNYGSSVLTKCSWGN PESCYLKIVELGEGFVDPDTGEVLGAEEEYIGAVEVIEPKGKFTIAKILEGDISRGAI AVLISKSDGNKLKKRIKKKKR" gene complement(556680..557615) /locus_tag="NT01SARS_0598" CDS complement(556680..557615) /locus_tag="NT01SARS_0598" /codon_start=1 /transl_table=11 /product="curli production assembly/transport component CsgG" /protein_id="EJP72110.1" /translation="MEYLSNKLFKQFTILNFIFLLSINVHSQDLPVIAITEIESSVDS SSWLDYKNSKSQNFQTMLETQLVQTKRFKIIERNRIDEVLSEQILQGEFSNNNTRMNV GGVDYIVYGSITKFGSKTKQIQTSGVSVVKLIAEFGVDLKVVDVLTGEIIKAETIDIS LETGSGTSTNSFGISDTLADPLSDIQRTAAKSSAALIAESIFPIKLITWEDELPNCCG YLNYGDAIMTEGDIVRVIKQGTAFVDPDTGLKLGSTEKTISKLQVVEVLPNFSKAKLI EGENPIGGELIRFDLNNATKSNNNSNQRERLGKEL" gene complement(557699..557776) /locus_tag="NT01SARS_0599" tRNA complement(557699..557776) /locus_tag="NT01SARS_0599" /product="tRNA-Ala" gene complement(557817..558680) /locus_tag="NT01SARS_0600" CDS complement(557817..558680) /locus_tag="NT01SARS_0600" /codon_start=1 /transl_table=11 /product="N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D" /protein_id="EJP72111.1" /translation="MQWQRSKIEPSISYIDISEDWKNYDLETYDNFIIWIGHSTFLIK RNGITIITDPIFSDRASPFRNIGPKRLIPPALSLEDIPNIDFVIVSHNHYDHLDIQSL VKISKLHPKAKFLVPAGDLRLLKRKKIQNASQFQWWESYKNAGITFTFTPVKHWSKRG LFDRNKSLWGGWFVQFNDYAIYHAGDTGYSNDFIKTKEVLGSPKYALIPIGAYDPEWF MASSHVNPEDAVKIMLDLEADYAFGMHWGTFVLTDEDTLEPPKRLQAATKNNNNIDFK SLMPGDVINLN" gene complement(558905..559354) /locus_tag="NT01SARS_0601" CDS complement(558905..559354) /locus_tag="NT01SARS_0601" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72112.1" /translation="MKLFLLFLSFYVVSIDLESSETNNDECISKKLQIMMPEYPYTTY QGYALVNFDVNEEGNLKNISAVESKCAISRNDDGSIEFRKCPFFKTNSIQAAKYIKYS PPVDTSGNPCTLKNQSHRYTYSLYKRNVKDLNFLLRDEFYEMRKNEK" gene complement(559415..562114) /locus_tag="NT01SARS_0602" CDS complement(559415..562114) /locus_tag="NT01SARS_0602" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="EJP72113.1" /translation="MFKKENYLMLVLVIGFGIFNTNLIAQDDAEDDVEEVVVTGSRIA TSEFTGAQPVVVIDQEDIARTAELGIAEVLRELPINIAGSFFERSGSSAGSQAQLSLR GLGAGRTLVLIDGRRIPSSPKLGGESANINTIPTAAVERVEILADGASAVYGSDAIGG VVNIITKKGFDGMIISGRVGDPDLPGGEEEAFSVVGGITGDDSNLTWTYEHSQRDIVY LTDRDYNAGRAPTSDDWFTGFSISTFAWNYILREDDPANGLVAGQWLPAAECAGDDRF VGGGKTYTLGSAPTGGLDYNYLCSFDYTQIMAQAAGKKNDFLTVNYDKQINDDMSAYA QIVVSRQETFGRYAPPAAFINPYPAGLATARIPAQADGTPERVVTINVPTQLRKRFIE IGPRASEDTDWTGNVVMGFSGTVMDDYTWDLSMQWHLADFLTFDCCYLQKPEYTQAAE GFKDDGYFTVNGTKYYSLFDPEVVAYYSSSPNVKSKSQFRSLEYTFGGPLNIVPNTDF ILGVQDAEYLYENTYDKQSEIGNVGGSSGNSDGTGREYTAYFYESKTGLMDGAAEIDV AVRYDDYSDFGTNTSYTVKGIWEVMDGLTLRASTGTGFRAPGLGDLVANTSFSADYHT DYVKCNAKGIAREDCPEEQVNTYISANPNLGPEESESMNVGVVYSAGNHSVAVDFFNT EIDGIITAVTVQDYIDASLLGPSYVAQLESQGAYCTRVGTQADAPLNECFRGPINGNE TSVSGTDIKYSGLFETGVGDFDVNFSAVVMDESESEAFFNGPVVNFVGLTSIPEFRYT VDVGHTLQAVPNLYMSLQYEYIDEIADTTDANYKATSMVDDFDQVNLRAVYTVPGMEN LSVSVAVRNLTKEDPPLTQSGTYNRLLHTDMGMQTFVGFTLEL" gene complement(562227..562832) /locus_tag="NT01SARS_0603" CDS complement(562227..562832) /locus_tag="NT01SARS_0603" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="EJP72114.1" /translation="MFKKENYLMLVLVIGFGIFNTNLIAQDDAEDDVEEVVVTGSRIA TSEFTGAQPVVVIDQEDIARTAELGIAEVLRELPINIAGSFFERSGSSAGSQAQLSLR GLGAGRTLVLIDGRRIPSSPKLGGESANINTIPTAAVERVEILADGASAVYGSDAIGG VVNIITKKGFDGMIIQVEXXXXXXXKLNIRHKYYLYLDINN" assembly_gap 562278..562297 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 563081..563869 /locus_tag="NT01SARS_0604" CDS 563081..563869 /locus_tag="NT01SARS_0604" /codon_start=1 /transl_table=11 /product="enoyl-[acyl-carrier-protein] reductase (NADH)" /protein_id="EJP72115.1" /translation="MLLKNKKIVIFGVANKYSIATGIARSMHEQGAELAFAYQNERLL KNIKPIAEELGSEILIECDVSNDNSIDQAFKDLTNQWNKFDGLVHSIGFAPADQLEGS FVDVTTREGFKIAHDISSYSFTALAKASKPYLNENAALLTLTYLGSIQTLPNYNVMGL AKASLEANTRFLAASMGKDNIRVNAISAGPIKTLAASGVKNFRKMLSQHSKRAPLGRT VTADEVGNVAAFLCSDYASGITGEITYVDAGFNISAMPLDELEE" gene 563866..564489 /locus_tag="NT01SARS_0605" CDS 563866..564489 /locus_tag="NT01SARS_0605" /note="identified by match to protein family HMM PF08241; match to protein family HMM PF08242" /codon_start=1 /transl_table=11 /product="methyltransferase type 11" /protein_id="EJP72116.1" /translation="MISSLYEKYALPKILDCCCSTKPVNYQRNKIVPLAKGKVLEIGI GSGLNMPYYTGSTVEKIIGLDPSEELNEIALKKAKDTKLNIDFILNGAEEISLPNNSI DTVLVTYTLCTIPQVSEALNEMKRVLKDDGMFLFCEHGIAPDKNIVNWQNRINPLWGK LFGGCNINRDIPKIIQQSGLKINKLEQMYLPSTPKIVGYNYWGMATL" gene 564497..565948 /locus_tag="NT01SARS_0606" CDS 564497..565948 /locus_tag="NT01SARS_0606" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72117.1" /translation="MDTAPVVIGIGDIQQKDNFDNLDEALVLMNKVTEAAINDCGNKN IVNYLDEIRIPKGYWKYRDPGKWIANKNNFSKTKTYVTKIGVLQQNLINSACKKILSG EINGSLIVGGESRYKRTKALIEKKDYEETELNINPDFYIKAKDDLYADIEKKELGMMA VGYYSIIESSLRARSSKSFNQHHEYIAKFYSEFSKIASKNDVGWIDDPIKPDEILNSS NINPEIAFPYNKFHCSSWNVNQAAGLIICSSKVADLLNIDRSKRVYLLASSENNFMIP TLLRPNLSKSYGMNLAAEFILNICKENNISEIIYDLYSCFPAAVEMFGEALKIKNISQ SSITGGMSFAGGPLNSYVLNSTVQMIRKIRSEENKCGIVTGISGMMTKQSFALWGKRN LINYSFKDVSEEAENHEVPYKISSETSGEGNIIGYTIIKNEESVKKAVIYIEDVNKNR NIITSENKEVIESMEINEWVGKWIKFKNLLLIV" gene 565900..567345 /locus_tag="NT01SARS_0608" CDS 565900..567345 /locus_tag="NT01SARS_0608" /note="identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891" /codon_start=1 /transl_table=11 /product="aminobenzoyl-glutamate utilization protein B" /protein_id="EJP72118.1" /translation="MGRKMDKIQKLAINCIVLISFSSAIFTDELKDIIDSKKSSFEEI ALDIWNYAELGYLETKSSNLLASELEENGFIIQKGVAGIPTSFIAEFNNGGPVIGILG EFDALPGLAQTNSPFKEVADNETGAGHACGHHLFGAASAWAAVVIKEWIEENNIEGTI RFYGTPAEEGGSGKVYMVRAGLFNDVDVVLHWHPDDVNSANSRTSNSNKSGKFKFKGI SAHAAGAPELGRSALDGVEAMNHMVNMMREHVPQESRIHYVITKGGLAPNVVPDDAEV YYYVRHPQMNVVDELFQRVVKIAEGAALGTETDMTYEVMHGNYSLMPNDTIQKIVHKN LEKLGGIKYSDDENEYAQEIYQTLINPDLKIGSQQNVLPFKYSHSYGSTDVGDVSWVV PTAGLRTATWVPGTAAHSWQAVASGGTSIGLKGAELAAKTMANSIKEIFENPEVIEIS KQELKQRTGEDFIYKPLLGDREPPLNYRKIN" gene complement(567338..569050) /gene="ggt" /locus_tag="NT01SARS_0607" CDS complement(567338..569050) /gene="ggt" /locus_tag="NT01SARS_0607" /EC_number="2.3.2.2" /note="identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066" /codon_start=1 /transl_table=11 /product="gamma-glutamyltransferase" /protein_id="EJP72119.1" /translation="MKKLLTTILFISHLSGTDYIDYLHPFHPTTSSNGMVVSQNALSS NIGTQILDMGGNAVDAAVAVGFSLATTLPRAGNLGGGGFMLVYIKDKNEIFYIDYRSK SPRNSSIEKLLGAKKIPERNSKLWERVDYTYLASGVPGTVYGLLEAHKNFGVLTLEQI MKPVIEQAENGIVVSSDLNYVIDVTPQLRTDPESFSIFFDNGEPLKEFSIMKRPDLAN TFKEISKHGAKGFYEGIVADKIVEAMEKNGGLITHDDLKNYKSFFRMPIALNYKGHMV YTAGPPSGGGITLLTALGVLNNIDIKKYKSDSTKAYHFLAEALRRGHNNRSHFVGDPE YFDVPVSKLLSSKRIKELSSSIDSNKASSIEEVIPFKPRINSKDTTHYSIVDKNGNAV SNTYTLGLSFGSGVTIPGTGILMNSQMNNFAYRYGDKNDISRGASPGNRFEPGKKPMS TMAPTIIFDKNNELFLITGSPGGSDIPAAILRVITGVIDFDLDIGEATMLPRIHKDWP YVGLEHERAVSRDIVRRLKSMGHETEYENTIGSTQSIHIINGVNYGFADLRRPNASVS VQSN" gene complement(569050..570546) /locus_tag="NT01SARS_0609" CDS complement(569050..570546) /locus_tag="NT01SARS_0609" /note="identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785" /codon_start=1 /transl_table=11 /product="sodium-dependent dicarboxylate transporter SdcS" /protein_id="EJP72120.1" /translation="MFSNNNGFYIGIGVFLIVLFMGFFNVIPESLSSLDGKSFNIKDK VFFVNSQSAWFVLAILLLMAIWWATEAIPVAVTALIPLALFPILDITSFQESAAPFAD KNIYLFLGGFILALGIESSGLHKRMALKMIITMGTNGAALVGSFMLVAALLSMFVMNT STTLMLLPIGLAVCTVVAETIPNISDQQQRHFDTALMLGIAYAATIGGMSTIIGTAPN IVFVQFMNNQFGIDISFFDWMKIGVPVASVMLFFAWIILTKYTFPTSFSLSSDTKIKL NGMYEELGPLTKDEIKVSILFFLAIAFWITSKAIRENLGIELQDAGVAIIAAILLFMI PSSENNKSLLQWEATTKLPWGLLLLFGGGLSLGAQVSQTGLGLWIGEGLTILENVPSI ILILAVASMIIFLTEMTSNVATTATFLPVFSAVAIAIGIVPVALTIPVCLAASCAFML PVATPPNAIVYGSGKFTIPTMMRAGFALNIVGIFVVTLFAYFLAPLIF" gene complement(570618..573548) /locus_tag="NT01SARS_0610" CDS complement(570618..573548) /locus_tag="NT01SARS_0610" /note="identified by match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="EJP72121.1" /translation="MKNYRYLLSLILLIPFAVSAQDNEDANASEVEEVVVVGSQIKGA KITGALPVSVITSDDIDALGIDSGDELLDNIAEFGQNTFNQNEFSGGYNASRGDVGAF NLRDIGTGNTLTLLNGRRLIQSPGYQTEPILGGSMPVMTTNSNAIPVYGAERVEILRD GASAIYGADALAGVVNTVLKSDFVGLNVRFKAIGYGDWDAQDNKVSVQWGQDFADNLN ISVYFDHYQREEIRGNEDPKWLAQDARVAPGLGAYDGTAWDDTSWRNNNAASKYGIWR GGGSRYLHTRPDTGNCDWTNTGGPTCLYESTSTNPNSDSLRAYYNETRWMRPDLERNN LFVFINKELDSGIEAYSEIGLYNSVAHQQLYGGTTLGAGGCGRTGTCTQPYLVPLSNY WLNQIVDADGNKLVDSSQIRNGLGLYKSRHRFDTPRGYFSHRTTIRLLQGFRGMTDSG WDWDTALIVSNAKSKQDNYGRQSMTLLEQALALSTPDAYNPFCGGNCSDESPFTINIV RGNTTQLYMWDFKMSNGNIYELPAGPVGMLIGTEFRKERYTDDRDPRINGTIRYTVPV GPRAGLTFPLISDIVNSSATPDSQGSRTTASLFTEFQIPLTENIDMQYAVRAEDSNDY GSTVVRKLALGWQIVDQVKFRYSTNETFRAPAMILVNEGFLGRSTATNDALLQYAAGE DQDNYSMQRITEGNKGLTPEEGENESIGFVLEPVDGLVITMDKWSIETTDTIGIFGMT NAILLDTLIRAEGGPTECVGNPNVKRTAYAGYDFAWPSSLCPAGEVMSVNDYYVNTDT RTIEGKDTSVMYNVDTDFGDFGFKVMHVHYDTFNQAAGGDARRLSDAADGILSGLASV RGIDNLLNLNGRIDDKYTMKMSYRNGPYEVLVSGTQWGSFFESAHTETIDGVRQMWPV DEMTVFNVTLGYKFKNDLRVRLQVKNIEDERAPLADETFGMYWGDLHTDFGRNYNVEF YKKF" gene complement(573662..575056) /gene="gltX" /locus_tag="NT01SARS_0611" CDS complement(573662..575056) /gene="gltX" /locus_tag="NT01SARS_0611" /EC_number="6.1.1.17" /note="identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464" /codon_start=1 /transl_table=11 /product="glutamate--tRNA ligase" /protein_id="EJP72122.1" /translation="MSKVVTRFAPSPTGTLHIGGVRTALFNYVYAKQNEGLFLVRIED TDKERSKKEYEKNILDSLASIGLSPDEKPINQSERNDVYVDAAKKIFDSGNAYWCDCS KEELEEMRKQQEKDGKKPMYDGRSRNKGLKQSENTVLRLATPEDGEIIVNDLIRGKVV FQNSELDDLILLRSDGTPTYHLCNVVDDFEQNVTTVIRGEDHLSNTPRQIHIQNALGY PALEYAHLPLVLGPDKRRLSKRHAATSLEEYKSDGYLDSAILNTLARLGWSKGDQEVF YMEDLIRDFNIRDVQKAGAIFDITKLDWLNTQHIANLSFEDFKKELKPFLKDLSIDID NHQNVDLLLSSMRTVESTFKKIADDLIPYYFEVNTYNQQAIDKFVDNEGLKILNDLSE ILLSIDEWSENNIDNALKNYQNENNCPVPKVNQPIRIALTGSTKSPSLGLTLAIFGKN EALKRIDNLIDHIG" gene complement(575056..575772) /gene="dnaQ" /locus_tag="NT01SARS_0612" CDS complement(575056..575772) /gene="dnaQ" /locus_tag="NT01SARS_0612" /EC_number="2.7.7.7" /note="identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406" /codon_start=1 /transl_table=11 /product="DNA polymerase III, epsilon subunit" /protein_id="EJP72123.1" /translation="MAKKYIILDTETTGLEVKQGHRVIEIGAVLLNDRKKSEEHFHTY LNPSRLIDEEASKVHGITNSDLEDKPAFDEIAEEFIQFIEGSTLVIHNAPFDVGFINH ELKLASTSYPMLEEICEIEDSLTLARDKYPGQRNSLDALAMRFDISGYDRTFHGALLD ANILADVYMQLTGGQSKFEFTSNGSSEIVNGTRVDQESIETFADLVTVKSTKSDIDAH EKRLSEIEESNNLETLWRKF" gene complement(575776..576207) /gene="rnhA" /locus_tag="NT01SARS_0613" CDS complement(575776..576207) /gene="rnhA" /locus_tag="NT01SARS_0613" /EC_number="3.1.26.4" /note="identified by match to protein family HMM PF00075" /codon_start=1 /transl_table=11 /product="ribonuclease HI" /protein_id="EJP72124.1" /translation="MKTVNIYTDGACRGNPGDGGWGALVEYQNFSKEYFGGQKNTTNN QMELKAAIEGLKALKETCNVNLTTDSKYVMDGITSWIDNWKKNNWKSSSKKDVKNKDL WIELDKYRSMHNVKWIWVKGHSGHEKNEIADMLANKGIDSI" gene 576228..576992 /gene="gloB" /locus_tag="NT01SARS_0614" CDS 576228..576992 /gene="gloB" /locus_tag="NT01SARS_0614" /EC_number="3.1.2.6" /note="identified by match to protein family HMM PF00753; match to protein family HMM TIGR03413" /codon_start=1 /transl_table=11 /product="hydroxyacylglutathione hydrolase" /protein_id="EJP72125.1" /translation="MLSIKPIKALSDNYIWLVTTNEGSIVIDPGESKQIIDLIKSNEI DLEGILITHHHYDHTNGIEEILKYKKVEVYGPKNNVNSITKRVKQNDVFNLIGLKFEV IETPGHTLDHIAFYCFKDGKSILFCGDTLFSGGCGRVFEGTYSQMYESLKKLSKLPED TQIFCGHEYTSSNLQFACAVEPNNQFIKKYNEEIIEKTKNGVPSLPSSLKIEHMINPF IRCNEENLIDNINKKFGEVSSEIEIFSTLRKWKDDF" gene 576974..578464 /locus_tag="NT01SARS_0616" CDS 576974..578464 /locus_tag="NT01SARS_0616" /note="identified by match to protein family HMM PF01464; match to protein family HMM PF01476" /codon_start=1 /transl_table=11 /product="putative membrane-bound lytic murein transglycosylase D" /protein_id="EJP72126.1" /translation="MERRFLKIIIFTGLLITSCQQIPINESNKKFVGDNIDKQNLEID LKKQEKIISYHSDIWSYIQTNSSYTSDGLDEQTLMYMNRHLQDLDKFKEFLNDSYYFI FFVIEELENAKLPIELAFLPYIESNYDPFSISSSGAVGMWQFMPRTGRTYDLERSWWN EDRHDPFKSTTAAIKYLKYLYERFDQDLYLTLAAYNAGPSFLDRQIKRNQRRGLNTDY WSLDLPIQTRNYVPKFIAIKELIINSDQYDIELPFIPYEPVVAKIEIPGQVEILTLSE YLNIKPELLYKLNAGYTKWASAPSEKSVFYIPIEQYDYFQTSENPFSDSNQINWISHT VESGDSLWSLARKYDTEVRIIREINFLENDLLSINTTLLIPLSKTESNNFIPYEMHIV SEGDSLWRLAKKYNLEVIDLARMNNIDVNSYLQLGQQLTIGNKNIHRNMESKKRTILY SVKQGDNLYKISELFDVSVKSIKDINKFKEETLRPGQIIKIAIKAF" gene complement(578461..579312) /gene="oppC" /locus_tag="NT01SARS_0615" CDS complement(578461..579312) /gene="oppC" /locus_tag="NT01SARS_0615" /note="identified by match to protein family HMM PF00528" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter, permease protein OppC" /protein_id="EJP72127.1" /translation="MNNNSLWSDALYRLTRNKAAMLGGFILILLIICAVLAPWIAPYS YSYQDLNLGASPPSGEHLLGTDILGRDLLSRILYGARISLLVGFVATGVALVIGVSWG IVAGYVGGRVDSIMMRIVDILYGLPFIIFIILLMVIFGRNLWLLFGAIGAVEWLTMAR IVRGQVIGLKNQEFVMAAKAMGVSNFSMFRRHLLPNILGPIAVYATLTIPQVMLLEGF LSFLGLGIQPPMSSWGTLIKDGVESMEEYSWLLIYPGITFTITLFALNFFGDGLRDAL DPKTSDN" gene complement(579309..580232) /locus_tag="NT01SARS_0617" CDS complement(579309..580232) /locus_tag="NT01SARS_0617" /note="identified by match to protein family HMM PF00528" /codon_start=1 /transl_table=11 /product="oligopeptide transport system permease protein OppB" /protein_id="EJP72128.1" /translation="MLAIFIRRILIAVPVLFAVASITFFLIKIAPGGPFDADRAVSPQ VLKNLNEAYNLDASNWEQYLDYMSGLLQGDLGPSFRFPGRSVTEMIATGLPVTFELAF YAILIALMMGVFSGVLAALKRNTVFDFIPMAIAMIGICVPTFLMGPLLVLIFGINLEV LPVSGWGQLPGDKILPSLTLGFAYAAYIARLSRGGMLEVLNQDFIRTARAKGLTERMV VIKHAMQGGLIPVVSFLGPAIAGLLAGSFVVETIFQIPGLGRFYVEAAFNRDYTMILG TTIFFSAMIVFFNLLSDLAALWLNPRSRDAS" gene complement(580240..581853) /locus_tag="NT01SARS_0618" CDS complement(580240..581853) /locus_tag="NT01SARS_0618" /note="identified by match to protein family HMM PF00496" /codon_start=1 /transl_table=11 /product="periplasmic oligopeptide-binding protein" /protein_id="EJP72129.1" /translation="MNKKFIYIPVLFLLFGCSENISPVDSGLANQIYHHGNGSEPQGI DPHVVTGVPEHHILISLCEGLTIPNPNPNDMNGYMAGTAESWSISDDGKEYIFNINKN AKWSNGDPVTAQDFVWSWMRILTASLGSQYPDMLYYLEGAYEYHNGLIDDFSKVGVKA LDDKTLKVNLKNPTPFFLGLLSHYSTWPVHKETVLKHGDIDDRNGEWTRPGNFVCNGP FQLKTWELNNKIVVEKNPHYYDASMVRLNEIHYYPVSNVMTEDRMFRAGQLHLTSTLP SQKCPIYMESNPDLRIDPYMGTYFYRINTENEVLNDVRVRKALAYSIDRQLLVDKVTK CGQIPAYSFTPPGSNGYQPKTQIPFDPELAKSLLEEAGFTNGNEFPKLEILFNTNEDH RKIALAVQQMWQVNLGIEVELVNQDWKVYLNREMIGDFQISRAGWIGDYEDPNTFLDL MRPNRGNNKTGWENMEYDALVEKANTINDQAQRYELLYQAEEILIENMPVIPLYTYVR AYQLSSDVKGFNPHILDHHHPKFIYLERD" gene complement(581865..583742) /locus_tag="NT01SARS_0619" CDS complement(581865..583742) /locus_tag="NT01SARS_0619" /note="identified by match to protein family HMM PF00639" /codon_start=1 /transl_table=11 /product="putative PPIC-type PPIASE domain protein" /protein_id="EJP72130.1" /translation="MMESLRNFLTGPRLIFVVLVCAVPFVFLGTGSLQTAFTGSFGSI NGEDVTENDIQIAANSAVSRFKSIYGDEFDFDSLDEEIRSDAIKQELILQKVLLSGAR SLGFVNDVSNIEAQKGIIRTPQFQIDGVFDENVYEAQVNSNGFTKEGYLDAMTELYAS EIYRDSLTRFNFVTEKEIYELTALFEQSSDLDFTKISFEGLKSEIVNTLDELKNFYEE NQVLFYTNEKRGFKYFIVEQSDYEDSVEIPSDYIETAYQQYLDRAVNQAEIRFAHIMI DKNNYDDSGAAFDAIKAIESKLDAGDDFSSLANQFSEDLITKDNGGDLEYFEKDIYPV EFDNAIEQMELNDYSDIIELPDTYHILKITEYTEQDPLPEDQIKDNLKKELIETESFA LMNDDFSNLEDMLLDNSSIEEIANEISKELLSSDLYSIESYDFEINEPAIKENLFSNE ITLDQPIAIESGEMIIFMAYDRLEEPTLKTFQDVAEDTADYLSESKAIEKISLLQEEI LENSETDDRKSFVDTYSYVSQESYVDVKRYSSLLPREVLREIFDSSSGSTLNLSANNG DRYIINLNSFTKPSEEDIQEIINEYTAFGEDSFATKMQQIINEDIFQKADENLNDLLQ F" gene complement(583805..584083) /locus_tag="NT01SARS_0620" CDS complement(583805..584083) /locus_tag="NT01SARS_0620" /note="identified by match to protein family HMM PF00216" /codon_start=1 /transl_table=11 /product="DNA-binding protein HU-beta" /protein_id="EJP72131.1" /translation="MNKSDLIDAVAGDADLSKASAGRAVDAVLDGIAGALGNGDSVSL VGFGTFSVRHRAAREGRNPQTGAAMHIPASKVPGFKAGKGLKDKVKNS" gene complement(584171..586567) /gene="lon" /locus_tag="NT01SARS_0621" CDS complement(584171..586567) /gene="lon" /locus_tag="NT01SARS_0621" /EC_number="3.4.21.53" /note="identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763" /codon_start=1 /transl_table=11 /product="endopeptidase La" /protein_id="EJP72132.1" /translation="MSEIKTDLPLIPLRDVVVFPGIVTTLFVGRPKSVEALNVAMSSN KKLVLVSQKDAANEDPKISDIYEFASVSNLLQLIKLPDGTMKVLVEGHKRCSINKIID KDSYTVARVIELEDPVLKDSESANLVRLIKAKFEDYIGITKRIPPEIVSTVDSLDDLS RLIDTITGHLPIETSKKQDVLETIDLKERSEKILTFIESQLDVVDVEKKIRDRVKKQM EKSQREYYLNEQIKAAQKELGEIGEEGDELENLEKKIHEVGMTKEALKKAKSELAKFK HMAPSSAEASVVRTYLDCLVDVPWKKKSKIKTDIKASMDILEEDHYGLEEVKERIVEY LAVQKRVKSMKAPVLCLVGPPGVGKTSLGESIARATNRKFVRMSLGGVRDESEIRGHR RTYIGSMPGKIVQKLSKVGVKNPLFLLDEIDKIGMDHRGDPASALLEVLDPEQNNTFS DHYLEVDYDLSEVMFVCTANSLNIPTPLLDRMEIIRIPGYIEDEKVNIANKYLLPKQM SRNGVKDNEIKLNKEVILALIRYYTREAGVRGLERQIAKILRKVVKERLIAKKPNSKA TSITARNLEKYSGVRKFKYGIAEKDNAVGQVTGLAWTEVGGELLTIEASNIDGKGRVI KTGSLGDVMQESIQAAMTVVRSRADSLGIKPNFYEKYDIHIHVPEGATPKDGPSAGGA MAISLISIFTGIPVRADTAMTGEITLRGQILKIGGLKEKLLAAKRGGIKNVIIPKENE PDLQEIPEQITKSLNIIPVEWIDDVISAALVEEPTPKTKKIKTEKSKTSTKTENKTAH " gene complement(586598..587854) /gene="clpX" /locus_tag="NT01SARS_0622" CDS complement(586598..587854) /gene="clpX" /locus_tag="NT01SARS_0622" /note="identified by match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM PF07724; match to protein family HMM TIGR00382" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, ATP-binding subunit ClpX" /protein_id="EJP72133.1" /translation="MSKETSTDKLNCSFCGKVQDEVKKLIAGPSVYICNECVDLCNDI IEEEIKNDEDSPYEELLSPLEIYNQLDEYVIGQEKAKKVLSVAVYNHYKRLKRSGLKD DVELQKSNVLLLGPTGSGKTLLAQTLAKILNVPFTIADATTLTEAGYVGEDVENIIQK LLQKADYDPEKAELGIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTIASI PPQGGRKHPQQEFIQIDTSNILFICGGAFSGLNKVIEQRTNKTGIGFSAEVDSKSKIT SLNKNIDDLEPEDLVKYGLIPEFVGRLPVISNLHELDEDALVRILKEPKNALVNQYKH LFEIDNVELNFRDEALKEIAKQAISRKTGARGLRSIMEDLLMETMFELPNDDLEKVII DEKTVASKNDPIKLLKTKRKKTSSGN" gene complement(587856..588458) /gene="clpP" /locus_tag="NT01SARS_0623" CDS complement(587856..588458) /gene="clpP" /locus_tag="NT01SARS_0623" /EC_number="3.4.21.92" /note="identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, proteolytic subunit ClpP" /protein_id="EJP72134.1" /translation="MNDIQQALIPMVIEQTPRGERSFDIYSRLLKERVIFLSGPIDDY ISNLVVAQLLFLESENPEKDISIYINSPGGSISAGLAIYDTMQFVKPSISTMCIGQAA SMGALLLAGGDEKKRFALPNSRIMIHQPLGGFQGQASDFEIHAKEILHMKKIVNEILA KHTGQTIKKIEKDTDRDNFLDAKAAKTYGIIDNILEVRNS" gene complement(588467..589762) /gene="tig" /locus_tag="NT01SARS_0624" CDS complement(588467..589762) /gene="tig" /locus_tag="NT01SARS_0624" /EC_number="5.2.1.8" /note="identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115" /codon_start=1 /transl_table=11 /product="trigger factor" /protein_id="EJP72135.1" /translation="MKVNIKKLKDLERKITISVPVDDYQEKFSSKIRNIKSKAKVDGF RKGNVPNDVLEQRYGPSIHAEVINELIQDSYPKAISDNKIRPASSPQVTIENEDPKKP LTYSAVIEVFPDIKPKFSRWSNYEEFSIEIEDSDIDLAINDIKKRYGEWKDVDRKSKL DDQVVIDFLGKINDEEFEGNSATDFNLILGSKSMIPGFEDQLVDKKPSKFTIDCKFPE DYFKKDLANVDAKFEINLKKVQEITEAKVDKDLFDKLQMDIKEKSEFRDEIAKRMENE VEIQEKDLTKESIYETLLNMNKFSAPKSTVNEQADLMRKDALMRIGHTEDNAGDDLFP VSTFTEKAEKRVRLDLLFAELIKHFDINVSKEDVDNFIEKESSRYKDPEQYKKWISGQ PQQLEQFRMIVLEEQLVEKLKNALKSKKKVIKFSELANR" gene complement(589776..589854) /locus_tag="NT01SARS_0625" tRNA complement(589776..589854) /locus_tag="NT01SARS_0625" /product="tRNA-His" gene 589939..591339 /gene="gdhA" /locus_tag="NT01SARS_0627" CDS 589939..591339 /gene="gdhA" /locus_tag="NT01SARS_0627" /EC_number="1.4.1.3" /note="identified by match to protein family HMM PF00208; match to protein family HMM PF02812" /codon_start=1 /transl_table=11 /product="glutamate dehydrogenase" /protein_id="EJP72136.1" /translation="MNNFLSDTTKYVNKALKYSDMSAGLANKIITCNSTYTVRFGVRL RGQIYTFEGWRSVHSEHMEPTKGGIRFDLATNADEVEALAALMSYKCAIINVPYGGSK GALKINPNSWDEKELEKITRRFAQELIKRDLISPSMNVPAPDIGTSSREMAWIADEYR KIHPSDINGSACVTGKPTSKNGLVGREEATGRGVQFIVREFFRNPELLKKVKLDEDLS TKSFILQGFGNVGYHLSKFLTEDDGLNLIGIAEYNGGIFNENGINVEHAKKYFDKHNS FENYSKATFVKDSTLLLKRRCDILIPAARENVITEKNASDILAKLIVEAANGPISYKG NQILNKKKVFVIPDILANGGGVAVSYFEWVKNLRHIRFGRLEKRRNQIQLNTLIEAIE TMTGKSMPEKYKEKFVDGIEEIDLIRSGLDDMMIDGFQNVKEEFLKNEKIPDFRTAAY KTAIEKIALSYEFIGL" gene complement(591326..591979) /locus_tag="NT01SARS_0626" CDS complement(591326..591979) /locus_tag="NT01SARS_0626" /codon_start=1 /transl_table=11 /product="glutathione S-transferase N-terminal domain protein" /protein_id="EJP72137.1" /translation="MKYPILYSFKRCPYAMRARMALQLTNIKCEIREVRLNNKPKHML EVSPKGTVPVLILNDRTIEESMEVIDWALNQKNVFEGNLKENQIKISDELIERFDDKF KYHLDRYKYASRYGDVDEIHHRNKCEKILLEIEDIISDEEWFFGKKINKLDISILPFI RQFRIADADWFDNHKRLKKVKNYLHNFLASKILKDVMINYDVWKEESEISYFPITNR" gene complement(591984..592916) /locus_tag="NT01SARS_0628" CDS complement(591984..592916) /locus_tag="NT01SARS_0628" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72138.1" /translation="MNEIVALYKFVNVANPTDLQKRLKSRLKYLNIYGTILISHEGIN GTISSNNPENLSSAVSFIESIKGFKKLDLKYSQSQKKPFVRLKVKLKKEIVTIGDQSI NPNEDVGEYVMPEDWNDLIKDKDTIVIDTRNNYECSIGTFKNAINPKTDKFSDFPEWI KNQNFSDEERKNKKIAMFCTGGIRCEKASSLMKMRGFENVYHLKGGILKYLENIPAEK SLWNGECFVFDDRVSLKHNLKEGSYDMCHGCRMPLSRFEKQSKQYVKGVACPKCYKTT SDKQKERYKSRQKQVELAKKRNTNHIGPKEEVLN" gene complement(592909..594723) /locus_tag="NT01SARS_0629" CDS complement(592909..594723) /locus_tag="NT01SARS_0629" /note="identified by match to protein family HMM PF00884" /codon_start=1 /transl_table=11 /product="phosphoglycerol transferase I" /protein_id="EJP72139.1" /translation="MYLSLLLILVSFFLLKGILQSDSKLKKYVILITFYLNYFLLTVY VLFNFLSGDGINDAIIFHVKFGINGFGVNEYIIPSIIFIFFNLIAFSSSRIFLRNLTD QKSKLITNRTLSLTILVLSIIFNPFYKDIYELLSDRSNNYQVDKNSFYEQDIIFSDTR KNIVFIYLEQIERTYLNEDLFPNLLPNLKTLEKQSISFTNIDSPRATNWTIAGMAATQ CGVPLLTPIASENSMSGMDKFLPLANCMGDILNEESYKLHYIGGSDLDFAGKGNFYKT HNFDSVEGWYELQNKIKDKNYRSPWGVYDDELLDIVYDRIEILSKANENFGLFALTLD THHPNGYISASCENKIYGDGTNSILNSIHCVDELIGKFMEKFLNSEIYNNTTLVLLSD HLALKNTASEVLKNANRSNLFMIFDKDAKPQLINDIGNSFDIGPTVMSFLGANTNGLG LGRNLITNESLSLDLNINEVIDANKRKILELWSFPKIDQGFSISIDQLKIFFGNRYIN FPALIVLNSSNEVDQIMFDFYYANPLSNKVNRLNKNVNFIWLDKCEKIFINKFINNNK NKGYCILLENKKNSQFEVIAAEENRINSAYLKNFFNNE" gene complement(594743..594899) /locus_tag="NT01SARS_0630" tRNA complement(594743..594899) /locus_tag="NT01SARS_0630" /product="tRNA-Arg" gene 594978..595817 /locus_tag="NT01SARS_0632" CDS 594978..595817 /locus_tag="NT01SARS_0632" /note="identified by match to protein family HMM PF00763; match to protein family HMM PF02882" /codon_start=1 /transl_table=11 /product="bifunctional protein FolD" /protein_id="EJP72140.1" /translation="MSAIILDGKVLAKISEDSIKERVSKLSEKGIKPTLATILVGNDP ASETYVKMKRNTCSKVGMESIAIELSENTTTDELLDKIKLLNNDKNVHGILLQHPVPS QIDERKCFDAIHIDKDVDGVTCLGFGNMSMGIDAYGSCTPAGIIRLIEHYELEVEGLN AVVIGRSPILGKPMAMMLLNLNATVTICHSRTKNIEKIISEADLIVGAVGIPKFIKTE WIKKGSIVIDAGYHPEKCGDIDLDGIEDIAKAYTPVPGGVGPMTINTLILHTLISAEK AFN" gene complement(595814..596164) /locus_tag="NT01SARS_0631" CDS complement(595814..596164) /locus_tag="NT01SARS_0631" /codon_start=1 /transl_table=11 /product="putative triacylglycerol lipase" /protein_id="EJP72141.1" /translation="MNTIDKEEILKTSKWIRFIFMVLYAFIINFALTISIGLAFIQFL FVLFTSKVNTSISSINSHVLEFFNDSLKFLLFQTEEKPFPFKNDTSEENSIIEAESEE VVESTTENEDQDKS" gene complement(596173..597183) /locus_tag="NT01SARS_0633" CDS complement(596173..597183) /locus_tag="NT01SARS_0633" /note="identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF07479" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate dehydrogenase" /protein_id="EJP72142.1" /translation="MKENNKVVVLGGGSFGTVLANLAASNGYEVSLWVRDAEQALRIN SEGANTNYHPELKLSDKIEASDDLKKVIKDASVVLIATPSSIFENITKRIVPLIDKNA YVISCTKGILSKPFRLLSDVISSQISNDIGVLSGPNLAKEIAESKVAGTVIASHSKEL ILSVKSILSSDTFKIYSSQDMEGVELAGALKNIYAIVCGMAESMKVGENAIGLILTRS MAEMSRFAVAKGADPITFLGLSGMGDLVATCTSKLSRNYQLGYYLGSGLNLSDSKLKV GQVAEGIRTLEVIKSESDKLGLNMPLVESLYKIINEKSSPSSLIEDLIKNPHEVDVEF TH" gene complement(597187..599013) /locus_tag="NT01SARS_0634" CDS complement(597187..599013) /locus_tag="NT01SARS_0634" /note="identified by match to protein family HMM PF00183; match to protein family HMM PF02518" /codon_start=1 /transl_table=11 /product="chaperone protein HtpG" /protein_id="EJP72143.1" /translation="MSKSRTRSFQTETKQLLKLMIHSLYSNKEIFIRELVSNASDALD KLRFNSVQNKKLSKFAKDPSIKVQVLSDENKIIISDNGIGMSEDEVIENIGTIARSGT ASFLENITGDEKKDSNLIGQFGVGFYSVFMVADKVQVISKSALNDKDEGTFWESTGED KYKIKSVEKINNGTEIHIFLNDDNTEFADIGRVRFLLEKYSQYINFPLYISDGKETNE RVNEAEALWLKSKRSIKDEEYKEFYKFISFDQDDPLLWIHNKVEGKNEYTNLVYIPSK PPFDLWNRESPRGLKLYIQRVFIMDDASNFLPLYLRFLRGVIDTNDLPLNVSREILQS NPLVDTIKKSITKRTLDSLKKLKDDSYEEYLEFWKEFGLVLKEGPAEDIENRELIASL MLFNSSNLSDSSKYTSLDSYVENMNESDDKIYFCVADTFEAATNSPHIEKLKSKNIEV LLLTDRIDEWLMTSIFEYKGKQLVNVSKESVSKNDDDNKLNEKDSELTKKIKKHLNDR VSDVVISDRLIDSATCLILPQSEPGAQLRKILEASGQSFGTTKPIFEVNKNHKLLKKL KDLKGKQFNSFVDFLYDYALIAEGGSPKDPAKYLRQLDKYLS" gene complement(599073..599471) /locus_tag="NT01SARS_0635" CDS complement(599073..599471) /locus_tag="NT01SARS_0635" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72144.1" /translation="MILTLLILCYSLVLGIIFAQVLLTAPVVFKVLDSQNASKFLRKV FPRYYLLLFLITLVALLISFLFFKKLDVYMASVAAVFAILGYLIIPITNSARDRGWDK LFKWLHNFSVFNTLVIMIIAIIQIFRVTTL" gene complement(599488..599564) /locus_tag="NT01SARS_0636" tRNA complement(599488..599564) /locus_tag="NT01SARS_0636" /product="tRNA-Asp" gene complement(599613..599689) /locus_tag="NT01SARS_0637" tRNA complement(599613..599689) /locus_tag="NT01SARS_0637" /product="tRNA-Val" gene complement(599756..600652) /locus_tag="NT01SARS_0638" CDS complement(599756..600652) /locus_tag="NT01SARS_0638" /note="identified by match to protein family HMM PF00892" /codon_start=1 /transl_table=11 /product="putative transporter, permease protein" /protein_id="EJP72145.1" /translation="MKTNFQRSNYFLILALGATLIGFAPIFVKWSSLTPTAISFYRMF LAIPFLFILNFSLNKTLKFSVNNKKTIFYSALASLAFTTDLTLWHFSMNITSVANATI IVNSAPIFVAIIAYIVFSEKPSKGFASSFLITYIGIIGLVYFSNNYINGKILGDILCL VAALFYGIYLLVISRLGSEDSLNIIFYTTLFCCLFSAIPMLIQGGNFIPSSSIEWINL FSLAILCQLGGQYFITHGIGKIPASVGSIGLLMQPLTASILAIFLFNEILNVMQITFA VLSMFGIYLARLNISKSEIKQN" gene 600670..602034 /gene="xseA" /locus_tag="NT01SARS_0639" CDS 600670..602034 /gene="xseA" /locus_tag="NT01SARS_0639" /EC_number="3.1.11.6" /note="identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII, large subunit" /protein_id="EJP72146.1" /translation="MQNDIVSQNEEIISVGELNRSAKYLLENNFSNISVLGEISNLAK PSSGHIYFTLKDEDGAIRCAMFKNQNLKLNFSPENGDQCVLKGQVSLYAPRGDYQLIV KSIQPAGAGNLMQQFEALKKKLDQEGLFNLDEKFQIPESPKHIGIITSLSTAALQDII STVKRRAPSTQISVSDASVQGDNAHVSIIAAMERILEFNKKTESSPIDLVVFARGGGS IEDLWCFNNEELAREIYNYPIPTISGVGHEIDFTICDFVSDIRMPTPTAAAELFTEFN YQLQDKFIEYKMKLESVLNKKIDELKNLLLQNQSKLKNPITKLREISQRLDNADLRLQ QNQKLIIANYNNKINLLIGNINNFNPEKRLQDLSDKVNSLNEFLQRGISSNVKNIKNQ LIKLHKNLEILSPLSILDRGYAILTNKTGAAIKSIKEVSKGESLRARLSEGSLDLDVK NKNE" gene 602027..602809 /locus_tag="NT01SARS_0641" CDS 602027..602809 /locus_tag="NT01SARS_0641" /note="identified by match to protein family HMM PF01551" /codon_start=1 /transl_table=11 /product="M24/M37 family peptidase" /protein_id="EJP72147.1" /translation="MNKFDIRIIFLFFFTLDVLSENIGQPGELFPIKVNKGIFTSSNG LIKIDNSYYKLVPLSFSKQGQYVMFEDTKIFIQNKDFGESRITITNNALVNLSDEDKD RTIRESKIINKALQTYSKKMKPTFSFISPVDGIISSRYGKKRFINNSPRSPHLALDIA APEGTKVLSPEDGKVILIGNFFYSGNYLIIDHGQGLLSSYSHLSSISVSEDDILKQGQ EIGKVGSTGRVTGPHLHWTVYYEKVRINPESLLKDNYLEALL" gene complement(602792..603211) /locus_tag="NT01SARS_0640" CDS complement(602792..603211) /locus_tag="NT01SARS_0640" /note="identified by match to protein family HMM PF00578" /codon_start=1 /transl_table=11 /product="redoxin domain protein" /protein_id="EJP72148.1" /translation="MILVGCQKYDIEVFNGPNTNLDRLNGNWVVINYWADWCAPCIKE IPELNEFADENADLIVYTFNFDELDIDDLKPVAKKFNIEVPSLISHPRDIWGISTPPA VPATFFINPNGELALSLFRPQTKDELNKIFSELKESF" gene 603281..603877 /gene="wrbA" /locus_tag="NT01SARS_0642" CDS 603281..603877 /gene="wrbA" /locus_tag="NT01SARS_0642" /EC_number="1.6.5.2" /note="identified by match to protein family HMM PF00258; match to protein family HMM TIGR01755" /codon_start=1 /transl_table=11 /product="NAD(P)H:quinone oxidoreductase, type IV" /protein_id="EJP72149.1" /translation="MDDKFLLVLFYSASGSVKNLAHAISDGAEEHGLKVKIRTVPKVS SNTEKTEPDIPDSGEIYCTKEDLINSSGIAIGSPTRFGSMAAPLKYFLDTTGDLWATN ALENKPGLAFTSTGSMHGGQEVTLFNILTFMLHHGMIILGTPYSLSQLNKTKSGGTPY GPSHVESFNSSNELTLDEYEIAKQCGQRLAKLILKVSE" gene complement(603881..604000) /locus_tag="NT01SARS_0643" CDS complement(603881..604000) /locus_tag="NT01SARS_0643" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72150.1" /translation="MIGKSQATKRTKSILSRKIFKTFTTIRKKNNELVTKRYF" gene 604262..606097 /gene="sppA" /locus_tag="NT01SARS_0645" CDS 604262..606097 /gene="sppA" /locus_tag="NT01SARS_0645" /EC_number="3.4.-.-" /note="identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706" /codon_start=1 /transl_table=11 /product="signal peptide peptidase SppA, 67K type" /protein_id="EJP72151.1" /translation="MSKVKSIWSKADAFLSTTRKLILNTFTVLVLIFVTVAIFGAFGA MFTEDEEIDTENKVLWFKPIGVVVDNATSSAPSFDDIFASNSVKQHELDDLLKVLDNA ATDESLAAVYINVSELGMYYASAFEIANAVKNIKDNGKRVIAYAEDYGNAAYLISSQA TDVMINNYGQVSAFGFARKREYYKDLYKNIKLNYHVFVAGDYKSGPEPYTRTSMSEED KLAWNEYANPLWEKMTNMIETSRNLPKGTMQQYGDSIWDLSIENPETAEIALNVGLVD QIVTREELRHWMFEEFPNEENDKNEYPDAVYIYEYLSTIEEEEKVSKNKIAVINVEGA ITTGEATYNIAGSDTIVSNIRKAIKDENVKALVLRVNSPGGSVLASELIINSLNEFKE TGRPIVSSMGDIAASGGVWVTTLSDEIWAKPETLTGSIGVYGLIPTLDGIYEWAGIQV DGVSTTKAGEWDSRLAMPDYVNKAIQASIDNSYDKFVSKVAENRMMPYKEILAVAGGR IWSGQKALELGLVDRIGNIKDAIESSAELADIDDYEVVSYEKPMDPFEIILSELLDNL DVRVNVDKNIASLLKIINSDYKFIDKEKDINIASYCFQCEFLEAK" gene complement(606090..606767) /locus_tag="NT01SARS_0644" CDS complement(606090..606767) /locus_tag="NT01SARS_0644" /codon_start=1 /transl_table=11 /product="putative DnaA-like protein hda" /protein_id="EJP72152.1" /translation="MNKPKQLTFPWSKPNKSSLDEFYFDEANHELKKILDTDDDTFLY GIKKTGKTYLLQALCNKYADIDKMSLYLPLAEASQLDAKILDGVEHMDIICVDDIDLI EGFKNWETAIFNLINNCQTSGCRLIFGSSKNSSTINFSLNDLKSRVRKIDQIEVFPIS DSNLSSAFEEISKHRSIIIGDKELNYLLTYTERSISSLTNILNKLDELSIQQKRKITI PLIKEII" gene complement(606760..607311) /locus_tag="NT01SARS_0646" CDS complement(606760..607311) /locus_tag="NT01SARS_0646" /note="identified by match to protein family HMM PF01066" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase" /protein_id="EJP72153.1" /translation="MIKYFIFIPNLLSIIRIALVYPILNNIYVGNFETSIIFFLIASF TDALDGYLARKMDWQTELGRILDPVADKLLLSGTVFIFWINNFIPFYIFVIFISRDVA ILIGAAIQMSLIESDTPSPNLLGKLTTGLQIIYISIIFINEIFNFDISFNFLNILIVF VTILSLFVYTFNWYKDLREYHNE" gene complement(607308..608327) /locus_tag="NT01SARS_0647" CDS complement(607308..608327) /locus_tag="NT01SARS_0647" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72154.1" /translation="MRLIKNFLILLIIFSNTGFGKDFKELFVIYEPLNDPASIEKSIN SSFNTMVFRLSGSESPSNIWKIINAGNARKDFISSYSIKNFDEKSFLQVNFDKDALIK VFKELKIPVVGNSRPVVLILMKVDSGSMDPYFITSYEIKNSIDELIQNAIFNYSNSRG IFIELPDIDLTDRFDLLKYEKLIDSKDFISSKYLSDKVVTIDLTKVGLNNWSVTGDVN NQYSNDEFYEDFFEDFDNYIESEIDMLLSKNAVDITKEELIKIHINNINTLLDYKESR RIIENMVGTIQMKIISFDTDEIGFEVRMLGGFKTLEKQITENSFFEIIQGSLNDKYLR LEYKQ" gene 608356..609387 /gene="purM" /locus_tag="NT01SARS_0648" CDS 608356..609387 /gene="purM" /locus_tag="NT01SARS_0648" /EC_number="6.3.3.1" /note="identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine cyclo-ligase" /protein_id="EJP72155.1" /translation="MTKEIIENDPYKSAGVDIDAGNELIEKIKADVASTQNVNVLGNI GGFAGMYEIGKEFEEPILVACTDGVGTKVSLAMEYNYIDGIGQDLVAMCVNDLIVTGA KPLFFLDYYAASKLDVDHAAQIIKSIAGACKNSGCALLGGETAEMPGHYIDNNFDLAG FSVGCVEKKNIIDKNSVCDGDILIGIESSGPHSNGFSLIRKILAESDKSVDEKKAVAT QVLEPTILYPTLISSLLKKHEIKSMSHITGGGLTENLPRSIPEKLCIELSVNSWDIPP VFKWLQSEGNIHNDDMYKIFNCGIGMVLFVDSSQEEDIRKSITEFNFKNYKIGTVSKT SGSKEVIFS" gene 609391..610038 /gene="purN" /locus_tag="NT01SARS_0649" CDS 609391..610038 /gene="purN" /locus_tag="NT01SARS_0649" /EC_number="2.1.2.2" /note="identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase" /protein_id="EJP72156.1" /translation="MKKIAVLISGSGSNLEAIAEACRANRINGKIVCVISNNPDAYGI KRAQKFNLQSVVIDHNSFASRTEFENKIENSLDNYDVDLIVLAGFMRILGENITKKYF GKMINLHPSLLPKYPGLDTHKKVIQNGDAIHGISIHYVTPELDAGPIIAQGAINITHD DNIESIEKRIHMIEHQLLPEIINEICLENIYLDVNTVMYNDEMDVTDHILINYDE" gene 610031..610711 /locus_tag="NT01SARS_0651" CDS 610031..610711 /locus_tag="NT01SARS_0651" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72157.1" /translation="MNKFLFLMYFFCGAMIATEVTQYKAKYQFDSEEISISGIREFKK NNDGYELKFRASNIVASMFFISEFDIDEVGVRSNSYQIKIRPKFLKRDQLIEFDRQEN IIKSSGRNTWKSSFISDEIAVDPLNAQIMIRKFIKENVNQFSLNLINMQEGGIETYNY SVSNNIKCDFNNEKYNCVVLDRIQPGSTRKTTYYLAEELDYMFLKIIDESEEWTNKLE LKEILSFG" gene complement(610697..611266) /gene="dcd" /locus_tag="NT01SARS_0650" CDS complement(610697..611266) /gene="dcd" /locus_tag="NT01SARS_0650" /EC_number="3.5.4.13" /note="identified by match to protein family HMM PF00692; match to protein family HMM TIGR02274" /codon_start=1 /transl_table=11 /product="dCTP deaminase" /protein_id="EJP72158.1" /translation="MSIKSDKWIKKMSINEDMINPFSENQVRLDESGNKLISYGVSSY GYDVRCSNEFKVFTNIHSAIVDPKSFDEKSFVNIESDVCVIPPNSFALARTIEYFKIP RNVLTVCLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTNLPAKIYAGEGVAQMLF FESDEECETSYKDRGGKYQGQTGVTLPKT" gene complement(611256..611852) /gene="recR" /locus_tag="NT01SARS_0652" CDS complement(611256..611852) /gene="recR" /locus_tag="NT01SARS_0652" /note="identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615" /codon_start=1 /transl_table=11 /product="recombination protein RecR" /protein_id="EJP72159.1" /translation="MKQDLVADLINALTILPGVGKKSAQRMALYLLDRNKDGASILAN TLSDALDNIQRCESCRMLTSNNLCKICLDTARDIKKICVVESPSDVLAIESTGGYRGK YFVLLGRLSPIDGIGPEELGINDLLSMIEKEEIAEIILATSSTVEGDATAIYITDHVK NAKVSRISYGIPIGGELEYVDGTTIARAIEGRVEINVD" gene complement(611849..613411) /locus_tag="NT01SARS_0653" CDS complement(611849..613411) /locus_tag="NT01SARS_0653" /note="identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit tau" /protein_id="EJP72160.1" /translation="MSYEVLARKYRPKSFKEVIGQKHVVQALINSIEQEKVHQAYIFS GTRGVGKTTIARILAKCLNCESSDKPTPNPCNKCSNTMEISLGRSVDFLEIDAASNTQ VEKVRELIETVEYKPAKGRYKIYLIDEVHMLSKASFNALLKTLEEPPPHVIFLFATTN PENIPKTVQSRCLQLNLKTVSDELLIDHFKKILKNEKIKHDEESLIMIANSANGSVRD GLTLLDQAIAYGNGMLSKDDVGNLLGTIDNSLVLELIESVIEGDAKKAFNILAKIEEL SPEYDVILQNLISILHKISLEQALNNSSDEDIKNLAVKIDQEFCQLLYEICLNAFSKF DVHPSPKESLEICLLRMLTFNPLQKLSESSVKNGSDIAQKKNLNTEKKEETVIKKENS FHLKDNNDWVRFFHSIELSPFARNYFGNMSFIDFNDNKLTLMSDSSAGEVPENIESEF KSAISSVFNKDIEINYENGNVNESPIILENKKMEDNINNAQSNINNDESIKSFVKKFK GSIKKDSIKPLK" gene complement(613421..613870) /gene="recX" /locus_tag="NT01SARS_0654" CDS complement(613421..613870) /gene="recX" /locus_tag="NT01SARS_0654" /note="identified by match to protein family HMM PF02631" /codon_start=1 /transl_table=11 /product="regulatory protein RecX" /protein_id="EJP72161.1" /translation="MSEESSLIYNKALDILSRREHSAKELIFKLEKKFDSTEEISLTV SKLKKNNLLNDFRYAEAYVVARKRKGFGPKKIKFELLSKGIDESDIHKVLNEEGGWKK AAKKAFDKKFKNGPSEETNEKLKQKSFMKNRGFTFQEIESVFSDDML" gene complement(613870..614328) /locus_tag="NT01SARS_0655" CDS complement(613870..614328) /locus_tag="NT01SARS_0655" /note="identified by match to protein family HMM PF05433" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="EJP72162.1" /translation="MNFKHFILITTLFLISCSNMSLTPEVVRKSDVQKQQYVVIGTIL DVSSVTIEGDRETGAAAGALIGGSVGKNVTDSEPESDIAAIIGGIVGSAVGAELGSNL TQKNGIELLIETNGGRMISIIQEVGKYDFRVDQKVRIIKRNGKSRVIPFD" gene complement(614330..614722) /locus_tag="NT01SARS_0656" CDS complement(614330..614722) /locus_tag="NT01SARS_0656" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72163.1" /translation="MKITLIALSTMLLILDVNSENNETVIEEGQTWALEKRSTKFSPT NSKVLYYFSIDAFNTYQARKFNDWDQFSIVDGRNLVRLNKGDRIKIIKPKHQEEIYEV ELLDGFEKNKKYYVIKEDLFLDFSLMEI" gene 614917..615369 /locus_tag="NT01SARS_0657" CDS 614917..615369 /locus_tag="NT01SARS_0657" /note="identified by match to protein family HMM PF00011" /codon_start=1 /transl_table=11 /product="small heat shock protein IbpA" /protein_id="EJP72164.1" /translation="MILNFTDPFFTTRVLGFEPLFDRLQRLSESNERSSSYPPYNISK DGNLFAIEIAVAGLSKEDIQIELADGVLTISYDGPNTEVINGENKVVYQGIAQRAFKQ QFTLSEDVVVQGAELINGLLTVNLEKIIPDEKKPRIIEIKSPKRISSK" gene 615435..617414 /locus_tag="NT01SARS_0658" CDS 615435..617414 /locus_tag="NT01SARS_0658" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein" /protein_id="EJP72165.1" /translation="MKFLKISYLLFFCLALEAVIVDTGHANVSLVKFESLEGDRSKTL LGIKMDMQENWHTYWKNPGDSGGPIKVKWSHDNNISISKIYWPTPTLIPYEPLMTYGY KNFVIFPFEITNSNNKNSYIEANIDFLICDDICVPEKALIKTNLDEIKSDPSLNDWFL KVPDQILPVKASVDSEYINIRFSSPFDVSSAIFFVDEQDIVEHAENQKLSKEENNYLL SIKKVDYLESFENLSGVLSINNNESFIIDAEIENITQNSFNISFFQALIFAFVGGLIL NLMPCVFPIISLKVLSFVSMSNQSPSKIRAHALSFCAGVMISFLLIGFAMILLKQAGL FLGWGFQLQSPTIVGLLSLLMFVIGLVLLSDINIGSSLTRLGGFGSSGSLAGSFSTGI LAVVVASPCTAPFMGAALGYALIQPSGLTLPIFSALGLGFAFPYFVLSASPSLINYLP KPGNWMVTLKEFFAFPMFATSIWLIWVFSVQTSSNEVIFLLITILLISLLIWIGSRLN KSSYRIIILAIAVFVIFFQFKDIPSNEMQATKSLKLENYDYVEWNKNIENEYQSKNQA YLINFTAAWCITCQTNDKIALSRPAVKEYIFENNIEYIVADWTNKNDEILKTLETYNR NGVPLYIFWKPGMSESKILPAILTEQVLLDSFNNS" gene 617453..618154 /locus_tag="NT01SARS_0659" CDS 617453..618154 /locus_tag="NT01SARS_0659" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72166.1" /translation="MFGTPFEIFGTVHVITIVVIAFVSIFLPKFYKGKADEQISLMKK IIAGVIAAHVIISPYKDLYLLANPYDWRETIPLHMCDLSEIFLIWFLLGGPKILYLCA FFWGLGGATMAILTPDISHHDLDYIFFMIGHGMIIVGIMFATVTLGNRPYAKDIIKVS LITAFVLLPIVYVINLILGEPANFWYLMAKPDGASLMDVFPDPPYHLLYTTPLAIAVF YLIYLPYFIKDNFAK" gene 618211..619296 /locus_tag="NT01SARS_0660" CDS 618211..619296 /locus_tag="NT01SARS_0660" /note="identified by match to protein family HMM PF00924" /codon_start=1 /transl_table=11 /product="MscS mechanosensitive ion channel" /protein_id="EJP72167.1" /translation="MQNFFDLLKEVWTSGFLGIDLGSLISSLLVLLAAFLFRGFIISV ILNALGRLAESTESKIDDEILNALRRPIGLVPVTIALYICTLILPLSGLIGDIATNVV KAFVIFTIFSALANAVKPVFAALSTSTWLTASMQMWLERASKFIVWVIGVAIILDIFG IQIGPLIAGLGLFSVAVALGAQDFFKNLISGILIIGEHRFQPGDRIEVSGQLHGIVES IGFRSTVIRTFDTAPMVIPNKDLSDVKVINHGEMINRRINWKINLIYSTSVEQLESIR NQIKEYIIDSNDFATDGDLDPVVRVVELGGSSIDMMIVAYADPMGFAAFNKVKENLIF NIMKIVKNNKSEFAYPSTSLYVESMPK" gene 619309..621075 /locus_tag="NT01SARS_0661" CDS 619309..621075 /locus_tag="NT01SARS_0661" /note="identified by match to protein family HMM PF02080; match to protein family HMM PF03600" /codon_start=1 /transl_table=11 /product="citrate transporter" /protein_id="EJP72168.1" /translation="MSDQIILSSTLIALLCLFIWGKVRYDALAVGALFILVVLEIIPA NEAFAGFAHPAVITVALVLIISQGLTNSGIAGLVGKLIGGREFTEIQFMVSLLFIAAI LSSFINNIGALAILLPITLNICQKMEWHPSKFLMPLAFACILGGMNTAIGTPPNIIIS EYKASISNAGFNFFDFSYVGLMITVICILFIAFIGNKLIFLRKEIPSNENLIDLKGYL FEVIVNENSSSIGMTLYAFKKRAGEDTEILGIVSESGAVRKVQNNMRIKAGQILVIKT PPDDIGNILDIFDFSIPKELHSFDEDDLEEIEVMITPGSRLIGRKYEFFLKLAFEELN LLGLWRKGSKYRTRLTRETFRAGDVLLLGVRDLAEEDVSNKIKHLGLMPLRQRELQTI PSRSRLIKGLAFFLLSIFLVSFNYLSAAPAFLLCVLGFARIKIIDNDFYRKIDWPIIV MLAAMIPIGTALQTTGVSAEIASFISQYASDLGLFWILFIILIVTMATTDIINNAATA VIMAPISVGIGLELGYAIEPFLMVVAVGASCAFLTPIGHQCNTVVMGPGNYKFTDYWR MGLPMDILIILASIPMILFVWT" gene 621079..621294 /locus_tag="NT01SARS_0663" CDS 621079..621294 /locus_tag="NT01SARS_0663" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72169.1" /translation="MDERYKRLNKSTGEPFHAGYQDEDGRIFLRYLSKQGNDGYYLEE WKKDIKSFKNKARELNINYDLNQQSNQ" gene complement(621260..622465) /locus_tag="NT01SARS_0662" CDS complement(621260..622465) /locus_tag="NT01SARS_0662" /note="identified by match to protein family HMM PF00144" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="EJP72170.1" /translation="MNLEMHIRAFILSFLLFPYASNTLADYFPNNENWDISSPEAEGV SPNKIDKLMDLSFSDDATQAVVVIKNGKIISEKYANGYDLNSHGTSWSMAKSYYAALI GISIDRGEINSLDDKVSVYLDYFDDERSDITLRDLLDMSSGLDFPTHEHEKMFFQADH LQYAKKVGVEKNAGEKFEYNNVNSMLLGDILFQATGKKADVLFEERILEPLGIGDYKL WKDEMGNVMTYCCVDMSARDYSKLGLLFARDGKWNDKQIVSKEFVDETFQVVWETPSR FSDYKRYYSLHWWVSKYDEESKIFNTSGKFGQYTFVDRENDVVVTRISKYSEQDNGST QKWGIMKYLRWAGIDNAIAIGRMLIASGTIESGSDVITPFTEEEGESYEFYVKYPEII DSIADLSRN" gene 622588..623043 /locus_tag="NT01SARS_0664" CDS 622588..623043 /locus_tag="NT01SARS_0664" /note="identified by match to protein family HMM PF00127; match to protein family HMM TIGR02375" /codon_start=1 /transl_table=11 /product="pseudoazurin" /protein_id="EJP72171.1" /translation="MHILLKKLSFSLILSFICIDLTSEAYTVKMLNQGATGVMVFEPA FLKINVGDTVTFESTDAAHNSASIPGMIPSGASPWNGQLSRDISVTFEIPGVYGYQCT PHAMMAMVGVIQVGDDNSNIETAKNVATQFKSSFVMNQTRLDEYLSKIN" gene 623086..623162 /locus_tag="NT01SARS_0665" tRNA 623086..623162 /locus_tag="NT01SARS_0665" /product="tRNA-Val" gene complement(623169..623915) /locus_tag="NT01SARS_0666" CDS complement(623169..623915) /locus_tag="NT01SARS_0666" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72172.1" /translation="MKILNSGLKIFFWIILIISFDTKSDISVKELDLKEVFKSGRSLM SLDNGLHYLEEESDSQKVLFIGVHGSDSEGYEWIYPLITINDNQNLMSFFRYNDNLCP NRAFANLSNEINRLLDQNKNIEQVVLMGHSYGAMIIAMFSEAWINEVPLTLHTVAGPL TGPVSSDLRSGLFKNMCNYSAPKFVRDNVSLYQWRTIKELDGAFNNLDYDPQIIEVDG SKVTRLPKTYNGRRLGHNWSISWVADQLKK" gene complement(623918..625312) /locus_tag="NT01SARS_0667" CDS complement(623918..625312) /locus_tag="NT01SARS_0667" /note="identified by match to protein family HMM PF00929" /codon_start=1 /transl_table=11 /product="exonuclease family protein" /protein_id="EJP72173.1" /translation="MNNLIFYDTETTGIHKDFSQIIQCGSIFTDINLNQKSEQNIGSA PLPWVIPQPKAMLTNKKINSFSSNISHYQMMKEIQNQWKEWCLDLPAIFITYNGHAFD EELIRRQFWCNLLEPYITNTNQNGRLDLMLMIHNIAPFFSEEISIPYFEDGPALSIKL EHLADEHGIDVSDAHDAISDCKFMIGLCKVIKDKIPEVFDSFLNISTKEGIKNLLYSN EFLALGEVYRRHPFKYPVVICGADNSRPNEICFFDLSFDPDDIINLDFTEINKMIQSG KRDLPLKKYKINKTIPICSSKLLKKNNHFDITHDELQRRADIVRSNKDFFTKVSQAME DRIMNFPEPDYIEGTIYSGGFPSYRDQDLMKEFHITDDLEQLIKISRNFEDERFRLLA ERIICNKYSTNIPEDIKSRYDDLINERVHSEGKWGSVDKALNEIEKLLDEKNNKEDQS ILLATKEQLLSMQQ" gene complement(625317..626534) /locus_tag="NT01SARS_0668" CDS complement(625317..626534) /locus_tag="NT01SARS_0668" /note="identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase family member 10" /protein_id="EJP72174.1" /translation="MMPELRPEAIDLLDRVKNFINDEVKPKEHVFHDQIKEGEDRWNQ YPEVIDELKDKAKASGLWNLFLPESEFGAGLTNYEYAHLAEQMGKCHIASEAMNCSAP DTGNMEVIARYGNEQHQEEWLQPLLDGKIRSAFGMTEPGTASSDATNMQATAVLDGDE YVINGEKWWTSGAGDPRCKIIIFMCVTNPDNPKHQRHSMILVPMETEGVEIKKMMHVF GYDDAPHGHAHMKFTNVRVPKENLLLGEGRGFEIAQGRLGPGRIHHCMRAIGAGEVAL ELMCKRGIDPNKVAFGKNLAQLGANFDYIAESRIELNAARFLTLDAAVKMDTVGNKVA ASEIAQIKVFAPNVALKIIDRAIQIHGGEGVSQLTPLASMYAHMRTLRLADGPDEVHR RAVARYELGKYMS" gene 626696..627598 /locus_tag="NT01SARS_0669" CDS 626696..627598 /locus_tag="NT01SARS_0669" /note="identified by match to protein family HMM PF00126; match to protein family HMM PF03466" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="EJP72175.1" /translation="MKISSFDLNLFVILNAIYTEGSLTKAAEVVGITQPAVSNALSRL REKFNDDLFVRTGSGMIPTQKTENMITDVQNALTLIQQSVNEPDTFDPKSSKRNFKLS LGDVSEGRVLPFIMKEIYADSKNISVGSFAYQRSDQVHALATNNLDFVVDPIIPRSDE INSEKVFEDDFVVMYREGHDLSKIKDVSVDDILDQKHLHVSNRRRGLHLIDTELEKIG YRREVALRCQHFLIAPTIIQSTDLVLMGTRSFANRNNLPFAEIPLDIPSMEYFLIWHK NDEGDGGHIWMKDLIVRAFKHAQR" gene complement(627605..628402) /locus_tag="NT01SARS_0670" CDS complement(627605..628402) /locus_tag="NT01SARS_0670" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase" /protein_id="EJP72176.1" /translation="MKIENLFNIENKIAVVTGGSRGIGEMITAGFLANGVKVYISARK APALIDKAKELSDKYQNECIPIPCDLSSMEGIKDFVEVLKENEDGIDFLINNAGAAWG EPLESFSEQGWDKVMDLNVKSIFFITQQLRELLSERATEDDPSRVINIGSIDGLNVPS METYPYGASKAAVHHLTRVLAARLVSENILVNAIAPGPYPSNMLGAAVNHDYSEIAKR NPRNRVGTPEDMAGLAIFLCSRAGAYTVGETITSDGGIVKTSSHNLS" gene 628495..629448 /locus_tag="NT01SARS_0672" CDS 628495..629448 /locus_tag="NT01SARS_0672" /note="identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367" /codon_start=1 /transl_table=11 /product="K+-dependent Na+/Ca+ exchanger family protein" /protein_id="EJP72177.1" /translation="MDFLINFLLLGLSLSILIWGADKFVDSASIIAKQLGINELTIGL TVVALGTSAPEIFVGISSIINESESLAMGAVVGSNISNIALIFGVSCIGIAAKPKKTP LVQFVPFLLSSFILGYALIDLSISKFESVLLLIIFLYFIYVTYQNRSNDDQMQEDSFP EEGSIYTIFALLFGLIALVAGSNYAVVYAEKIAVLLKISELVIGLTIIAIGTSLPELA ATISAVIKKKTDMVVGNVIGSNVLNITLVVPIIGFFSNVQLDSLILSRDFFVMIIATI LFVIIGISYSSKAFGINSIKLVGLILVSGYLMYILSLSSLI" gene complement(629445..629885) /locus_tag="NT01SARS_0671" CDS complement(629445..629885) /locus_tag="NT01SARS_0671" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72178.1" /translation="MLILLQNGEYDLIWINRIYLLFMAVIYGTIGVWAILDPLLGALE LGYPSFLEAVGLSVTSQIGYSEIAGIYGGLNLCIGIMCLVGIFKENIGIFSIKLITFI VGSIALGRVIFSMLPTTPGFYNTFFVFEVCAFFVGIILLYLRKA" gene 629981..630409 /locus_tag="NT01SARS_0674" CDS 629981..630409 /locus_tag="NT01SARS_0674" /codon_start=1 /transl_table=11 /product="putative thiol-disulfide isomerase" /protein_id="EJP72179.1" /translation="MLDENDKLVSPLPKPYDGLVYSVDDLKSFIVSTVKSNKQPIIIF GANWCPDCRIFSGTMDIPKIKSYIDDHFAILYIDVKRYEINMQLMEEFGIPSAEGIPR VLVFDKRMNLINNSNTTEWRTARERSSQEIFDFFQNMTTN" gene complement(630402..631676) /locus_tag="NT01SARS_0673" CDS complement(630402..631676) /locus_tag="NT01SARS_0673" /note="identified by match to protein family HMM PF07690" /codon_start=1 /transl_table=11 /product="sialin" /protein_id="EJP72180.1" /translation="MIIPYRFKIIFLSFLAVFICYIDRVNISVAIIPMQEQFGWSESQ VGIILGSFYFGYMITMIVGGYLADRYGGKKVLGYALLIWSFFTIITPFFSYQGLWWLI LIRILMGLGEGVTFPSWHAIYARWIPFKERTRAVGFTNSGIAAGTLFGYAVAALIIAN YSWEWVFYTFGALGFFWYFFWNTTVTSFPESNKNLSKNELELIQSEAPAKTSASSIPF LKLIQNKPFMAITVATFCNNWSLYTFLSYLPKYVNAPVSQGGMGIDLGSNAFIYSIVI PCLVAMIALILGGFLADNLIKKGYEVIKVRKTVNSIGFFGSAFFLYLISFEDSLLNAV ILLCLINICSGICAGGFGVNHADLGPKYTGSLVGIAGSIGMIAAILAPIVAGFILEIT NSWSSIFYICSFVLIFGGIFYLIFASASRQFN" gene complement(631673..633040) /locus_tag="NT01SARS_0675" CDS complement(631673..633040) /locus_tag="NT01SARS_0675" /note="identified by match to protein family HMM PF00067" /codon_start=1 /transl_table=11 /product="unspecific monooxygenase" /protein_id="EJP72181.1" /translation="MTNPNPGYILSDEILSNKINHPKHNISYPHKPSGSLNDLDLFTK GQPISLYKELREKSPVFFHDPMPTDPEPGYWVLTSYNDIKHVSMNPKIFSSQYSTGNL LTLGTEENRHPKLFKSTIDHMLNLDGEMHLGLRKEHMPFFKSGYVDELQKKVSVKVGE LLDVIAPMGECNLVQQVSQQLPIFTLSEILGIPEADRQKLVSWMEFLELAQYFTYEMI KEQNEGKTDSTPDPAMVDMFNAMVDEMFEYGRFILKNKRENPSDDLLSAIANAEIEGQ QLSDEFLDGSWLLIIFAGNDTTRNTMSGGIKLLHDNPKQKEILLENYELLPNFINETV RCVSPVIHMRRTSLEETEINGQMIGPYEKISLWYGAANRDPEIFKDPDKFDILRENAE KHLAFGIGRHTCLGKPVALMQLREFYKQFLTRFSDFEVNGDWKVAPNNFVHAIQEMPI KFTPE" gene complement(633033..633656) /locus_tag="NT01SARS_0676" CDS complement(633033..633656) /locus_tag="NT01SARS_0676" /codon_start=1 /transl_table=11 /product="Csf-1 protein" /protein_id="EJP72182.1" /translation="MDKVAIFGKKGSIAKYDLVKNKPVWVGDISPGYKPNIIGQFEDY IIVFSSSWSSKMVHCFKSDNGDFLWSHYQDYLHSSMIPFIPSSHDGYMYFLSSSREIS KMSWKTGKIKFRKRFKKSMFNFNQYFLVIISGDIILVSKKDALIVDKDSGDVQPYSDL GEKLNLKEITAALGDGTAFMSSIYLTHPNPSSDGTVAGGDAGGGGGD" gene complement(633716..636091) /locus_tag="NT01SARS_0677" CDS complement(633716..636091) /locus_tag="NT01SARS_0677" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP72183.1" /translation="MKNLKTILCALILAPFVLISQEVEEVIVTANKKAETVQEIPMNI SVITEATIEERGITNPEDYLRSIAGVSTPGGSNYYTFRGLNTSTSQRSSGTSSTYIDE INGSLMSLFDIERIEVLRGPQGTLYGSNAIGGTIRYITNKPDSSAAYGKIRLGYGDKV KANDPETSIEMMYNMPLTDSLAVRAVYSQLVSPGIYKNIQTGNTVGEEDDSQLMITLG FNNGGKLTGSLRYVNFNNKAYGILEPGQSKPGSADVYVEGCPQASSWWYNWDGDPTCS RLSAISGFAATEADYPNGSSVLTNYDPKYAHALAADESEDITRETLIANIKYDFGAFD ANLIISDRTVEEDAVTDWARIDMDDYVPAPLIVDGDKYYEDTTELRLVSKPGKFEWTI GYYNYKFEEQPNSISQTQYAVDAYWLDYVTSIAAGVDPAVYDATAYCPPFCSDHLGYP YLYYASYTEFNEQEETSLYGQFDYNVNDKLTLTLGIRDYEIEDASKTYQYGIFYMDST GCDGTDPAGTDCAELSGSESDTRMKYAVSYLVNEDLTLYATQAAGYRPGGNQAPLPPF CSSDEAAQANFSRRFNSDEAETTEFGVKARGENYTANVTYFDVDWDGIIIQVTPGCGW RYNFNGGKAETSGWEVDFTYAINDSVSLDFAGSSMTAETSIDIDSLGASAGDRLPNTV ETQWNLGLVYDTTIMSYPTYARLDVNYYGDSFNTFAENPNSSSPDYTKLNFNLGLDLS ENSMLQLSIDNLTDKRTEAYIYAVDDTSWRPRNWMQWIPPRTIALRYTYSF" gene complement(636280..636366) /locus_tag="NT01SARS_0678" tRNA complement(636280..636366) /locus_tag="NT01SARS_0678" /product="tRNA-Leu" gene complement(636412..636810) /locus_tag="NT01SARS_0679" CDS complement(636412..636810) /locus_tag="NT01SARS_0679" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift" /codon_start=1 /transl_table=11 /product="putative NADH dehydrogenase subunit 5" /protein_id="EJP72184.1" /translation="MNTIFKGYLLIIGITSCVMGLWAMLGPNFVSWYPAFDGVERYTP LANFIRTMSGVFVASGYILIRFIFSSSKVQLGTVLIYLCVFMLLGKVCGLVYEGYHFH DIVASILGVITLIGLTYVHKKRKDLINYDL" gene complement(636807..636986) /locus_tag="NT01SARS_0680" CDS complement(636807..636986) /locus_tag="NT01SARS_0680" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone oxidoreductase chain 1" /protein_id="EJP72185.1" /translation="MAFIPLAILIGYGVLVVAPIFCCFLAINSYKFNNYKEMYTWMGI GVLSFLLALYMLGVI" gene complement(637051..637689) /locus_tag="NT01SARS_0681" CDS complement(637051..637689) /locus_tag="NT01SARS_0681" /codon_start=1 /transl_table=11 /product="putative viral A-type inclusion protein" /protein_id="EJP72186.1" /translation="MKVERKFPEYLKRANNGGLLVGFIYVLVFMSILFLWIWQTFETE NDKSLLNTIDERLNLIEEQINIVDETNNDTITDISSSIQFLDKEVRKLWDLSNKRNKV NIQKLSDQAIKIEEILQKLQTDVDNNQTNLLKMRNSIETNMQNIENLGLSEEDLNSIR MNISSIDTQLMLLDDTVQALNNYKNQLNQTILEIQTQISSSEDLNSVQANEN" gene 637770..638882 /locus_tag="NT01SARS_0682" CDS 637770..638882 /locus_tag="NT01SARS_0682" /note="identified by match to protein family HMM PF00441; match to protein family HMM PF02771" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase family protein" /protein_id="EJP72187.1" /translation="MNLDFSDDQKFLQEEARKFLEKENALSRNRSVLENNANVDVELW NKIVELGWTGIRIPEEYSGLGLGHLELCVIAEELGRFLAPVPFSSSVYLFTEAIINYA NDDIKKEILPKLVSGEVIGTLAVAEDLQAPTAENITLQSDNNILNGKKIAVPDAEIAT HAIVVAKTSSGISLQLVDLNAEGVKIEKQENIDESRGYFSILFENSPSKLIGDETGGW DLYEALMNQAAVLFGYEQIGGSQAALDMAINYSKERYAFGRQIGSFQAIKHKLADMYI ALTLAKSNCYYAAWALSTNSADLPSASATARVSATKAYQLCSKENIQTHGGNGFTWEY DCHMFYRRSKLLSLNIGSLSNWREKLVTSLEQSNIN" gene 638891..640111 /locus_tag="NT01SARS_0683" CDS 638891..640111 /locus_tag="NT01SARS_0683" /note="identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="EJP72188.1" /translation="MDFNDTPEQAKFRKTCRDWLEKNAQLKDSSPSESNFANKDIIKE AKAWQKKKYDAGWAMLHWPKEYGGIGASPIERIIWANEESKFNVPKGIFEIGLGMCGP VMMQYASEEQKERYLPPMAEGKEIWCQLFSEPSAGSDVAGLRSKAVQDGDKWIINGQK VWTSGAHFSDYGILVVRHDPNLEKHKGLTFFFVDMKSPGIEVKPIKQITGGSSFNEVY FTDVEIPDSQRLGEIGDGWKVAITTLMNERLAVGDADGCDVEDAFKWAKTQDNQGEPL LNDKAARESIADWYCEASGLKNTKLRTMSALSKGDTPGPEASITKIVSAGKLQDIGNF GIDSMDMTGMLKTDDPDIRRFQNAWLGAPGLRIAGGTDEILRNIIAERVLGLPQDPRA DKGVAYKDIPSGKS" gene complement(640113..641819) /locus_tag="NT01SARS_0684" CDS complement(640113..641819) /locus_tag="NT01SARS_0684" /note="identified by match to protein family HMM PF00753" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="EJP72189.1" /translation="MYKYAILTFLILTSCSKENLEFNVPTTSEVEKLIKHSDEFNQEV ITFDTPGGKIHFAIGFGIANSIMVEGQDGNIIIDAADSRYDAEKIYELFRKKNSNPVK AIIYTHNHGDHTFGAAYYLDIQDYKPQIIAHEDTDYYVQRIIGILNPIITQRSARMFG TFLPEEELINVGIGPRLNVSKSPNGYVKPDLTFSDELKITISGIEIELYHAPGETNDQ IFVWLPKHKSLMPGDNIYKTFPNLYTIRGTTHRDVTGWIESLDLMKSFYPEYLFPSHT RPVIGKNEINNIFITYRDAIQYIHDQTIRLMNAGYYPDEISEMIELPQNLSSSPFLYE FYGTVRWSVKSIFNGYLGWFNGNPAELDPLSRKEKAKRISKLAGGENELIKELRLAVD KEDMQWALELSDYLISLDLFNSEVKTLRQKALIHEGAKSSNPNKRNYFLSSALELNDE FELTNLMNIDDTFLNNLSIDTLFNVLSVRFNPEDHDGSLYKVCFNFSSGLVRSITLRN GVAVISNEAQNNCDLEVLTQEIELKRVLTGLKNPVSSISSGEIVVQGGNTEFLKFLAI FR" gene complement(641830..642342) /locus_tag="NT01SARS_0685" CDS complement(641830..642342) /locus_tag="NT01SARS_0685" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="EJP72190.1" /translation="MKYITTLLSLIVLIGCSTTQSNIQVDSIETFNLDNYNDFDIKIN TSNISAEINPIVLERFREELKGAISERGLDFNKESNLIFEINFTTKESVESDRMDYYY SRYYWDYYRFRDDVYTVTENILRINLKDLEKERTVWTVVTVWRDGSKRSISSDDASAI LVDEIMLSFL" gene 642364..645228 /locus_tag="NT01SARS_0686" CDS 642364..645228 /locus_tag="NT01SARS_0686" /note="identified by match to protein family HMM PF00675; match to protein family HMM PF05193; match to protein family HMM PF08367" /codon_start=1 /transl_table=11 /product="Zn-dependent peptidase" /protein_id="EJP72191.1" /translation="MFNLEDQKYIKLLDLNAQIYTESEFNCKHIHLDSKSNEKVFMVA FRTIPEDSTGVAHILEHTALCGSKKYPVRDPFFMMIRRSLNTFMNAFTSSDWTAYPFA TLNDKDFKNLLSVYLDSSFFPNLDKLDFFQEGHRLEFKEENNIDSELEIKGVVFNEMK GAMSSISSQLWHGMSKHLYDSSTYKHNSGGDPESIIDLTHEYLVDFHKKHYHPSNATF FTFGDINPEEIQEFIDENVLKNFEPSNDKIFVENEVRIASPKTVSEYYNPLPNDENNH HVVLSWLLGESHDPVELLESYLMSNILLDNSASPLRKTLESTKFGKSLSPLTGLETDH KELVFAAGLEGVDSNMQEKVEKLIVDCLKNVVKDGIEKEIIDSALHQLEIRQKEITGS GMPYGLQIMLSCLPACIHNDDPLKVLDLDASFKIVKANLAKPKYMEKLIEAKLINNNH RLNYSLIPDVGFNKKNDEKILNKIKKKSKSLTSDDKNEIKVLAKSLKERQNSVDDPEI LPKVTKDDIPSSRVYPVAETFMSNNTLNYFYNTGTNGITYHSEIYPCEDLTEEEFKVA SLFANTLTDVGVGGKSFEEMQKIQSAVTGGISASFILIPKNNDSYSLALQVSSKSLEK NEPQMQELIASTVSKSKFNEKERIKDLLNFISSANERSVIQNGHVLAMSNASAQINNI AATNDMGSGINFITNTNDLSKNIDKNENLEKYIDLLQSIKSKILESPIHTFTASSIEK NNSQINFDFKESNGSNFKQKLFDIQTEKIGWITGAQVCYCAETFPTVDMKHEDAAALT VLGAVLRNGYLHSAIREKGGAYGAGAMQDIKNKVFKFFSYRDPKCTETFNEFSNSREW SLKNISPSQLDEGILNVISGIDKPLSPYGEAMSDFGANIDKKDLDTRLQFRSKVKMCS VDDLINVSRKYLFNESKRAVIAGEGYIDEMEKLNFKIQNI" gene complement(645229..645840) /locus_tag="NT01SARS_0687" CDS complement(645229..645840) /locus_tag="NT01SARS_0687" /codon_start=1 /transl_table=11 /product="transcriptional regulatory protein" /protein_id="EJP72192.1" /translation="MKRYNFCYIAFFILIFVLQSCATKPPENPDNICLIFQEKRSWYK AAIRSEKRWKIPPYVLISFVHQESSFKSDARPEREKILGVIPWFRPSTAVGYSQALTK TWDDYKDETGNTRANRKNFSDSADFIGWYASKGYYQGFEKTDARSLYLAYHEGYGGFE KKSYRKKQWLIKVADRVQARSTKYQKQYWGCAKELKKKKFIFF" gene complement(645827..647113) /locus_tag="NT01SARS_0688" CDS complement(645827..647113) /locus_tag="NT01SARS_0688" /note="identified by match to protein family HMM PF01068" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA ligase" /protein_id="EJP72193.1" /translation="MLKPWRIILELESDNSRLFKEGVIEKYLNELEFQEGLEMCLDPL VTFGVKQVPDSDHDGEGLGWNEFKKAAKQLIDRKKTGHAARDLIIELVNQSKKNQWND WYRRILIKDLRCGVSEKTVNNVAKRMGIKFRVPVFSCMLAHDGAKHPKKIKGDCLVEY KYDGVRVIAIVKNGKATLYSRNGKIFYNFPHIENALSKSEFNNVVFDGEVMSDDFQAL MKQVYRKSGAKTDDAYLALFDILPLDEFNSGKSNLNSIERKNELNKLSKKFDDVIKLV DYEVINFDEEKGQKKFAKMNKEALDKGFEGLMIKPNDNFYECKRSHAWLKIKPFIEVT LKVVDIQEGTGKHAGKLGAFSVEGEDDGKFFSLSVGSGLTDDERERFWSAKDKLIGRM VEIRADAITQSIESEHFSLRFPRFKNFRGFKEDEKI" gene complement(647117..647755) /locus_tag="NT01SARS_0689" CDS complement(647117..647755) /locus_tag="NT01SARS_0689" /codon_start=1 /transl_table=11 /product="putative cell division protein ZipA" /protein_id="EJP72194.1" /translation="MGTNSDLYLIGIAVLIFLIIVFLYLRKISNSGKLKVKIEEVPES FKEDKSLEIEGQQAFEFNEEEIKSYEEDQELAILNLISVDRSMFDNDQVYGFLTNYGA ILKNNYFSYQDINGNEIFRVANALNPGTFDNDTKTFAIVAASNLSLTTDPVDAVKQMI EFSVSFSEKFHASICDEERAPITKQMISHIESRAQDIARIKQVQTSTKKEVE" gene complement(647756..649954) /locus_tag="NT01SARS_0690" CDS complement(647756..649954) /locus_tag="NT01SARS_0690" /note="identified by match to protein family HMM PF02463" /codon_start=1 /transl_table=11 /product="chain F, Smc Head Domain protein" /protein_id="EJP72195.1" /translation="MQLKHIKLSGFKSFVDPTKISFPTNMVGVVGPNGCGKSNVIDAI RWVLGELSAKNLRGESMVDVIFNGSEKRKASGQCSIELLFDNSSAKIGGEYASYNEVS IKRVMTRDAQSDYFINNAKCRRKDVQDIFLGTGLGPSSYAIIEQGMVSKLVSAKPDEL RTHIEEAAGVSKYRERRRETESRIKRTKENLSRVKDIRDEIGRLIKRLENQAKAAEKY KKLNDEKSQIELDTAILFSLEAKNNRDDLQKKLDSLNRDLKIKNAESETIQSQIDQFR TENESVLTEYESAQKNFYSIGAEIAKREANLQNINKTENETKFKLEKTKENLEKAKET EKNFDELSPSEQAIHILNEIIATLKKYSIQNDSILDKANKLKVLLAEILNIASAQSKT LTEEYQSRQEDLSKEIFEAEKLKSSIEEEMQTYVEESSQAESVLISLRQKQSKFNEDL RSLENNKSIVELDSRSISEKITNIRLDLKTYEINLENSNKKIKAAGIDIEKIDFTKYE DLSISELEDKLADIEAKIIRLGAINLAAPEEIEEESKRKEELDKQYDDLIEALDKLNG AIKKIDNETKTIFKDSFDAVNIKLKEVFPKLFGGGLAELNLTDDDPLHAGVILMARPP GKKNSSISQLSGGEKALTALALVFAIFDLNPAPFCLLDEVDAPLDDLNTLRFINMVEE MSKTVQFIFITHNKVSMERSDYLMGVTMQEAGVSRMVSVDVNQALELAES" gene complement(649982..650767) /locus_tag="NT01SARS_0691" CDS complement(649982..650767) /locus_tag="NT01SARS_0691" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72196.1" /translation="MTIFILLAFIAIFPILAYLLANQTTNKGIIFGLSLIVISLCLII FISKFSVMGSFKKQVLNNEILEEIYIDSKISKNAFEGIESLLQADEIQVWLISFIGKA IELNKLNSAESLVTYAEKFFTSNEEKLIFYNLYTDLRDAKFPLFANANLSIEKDSEFP CTEFSGSIKLFILNGPEIPIAEKLFKQSEEIYVSNKDSLIPGFDLSSAYLNDETIESV IAINCKDTSLNFLSKDLIVLEKNQPSLNYKIELNEWLKESQEL" gene complement(650767..651138) /locus_tag="NT01SARS_0692" CDS complement(650767..651138) /locus_tag="NT01SARS_0692" /note="identified by match to protein family HMM PF03918" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein CcmH" /protein_id="EJP72197.1" /translation="MKKYTLIAIFLSMNIFSDMVYKFDNQEDELRFNNLIKEIRCPKC TSGSLSSSNAPISEDLKLKIVEMIKDGKSDSDIKEYVSDRFGKESLYDPEFTQQTYIL WFGPLIFIVIAFIIFFFRKKT" gene complement(651135..651596) /locus_tag="NT01SARS_0693" CDS complement(651135..651596) /locus_tag="NT01SARS_0693" /note="identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein DsbE" /protein_id="EJP72198.1" /translation="MLSTENEYPGADYKIFEIPDFSLSNLNGTNVISNKDLKGDYLLN VWASWCITCMVEHPYLSKLSNNGIKIVGLNYKDDRSDALVWLNKFDNPYDLIIHDFKG TLALDLGVTGAPETFLVNNGKVVAHYQGEVNQTVWNEVFQPIINSKNLSLK" gene complement(651659..653551) /locus_tag="NT01SARS_0694" CDS complement(651659..653551) /locus_tag="NT01SARS_0694" /note="identified by match to protein family HMM PF01578" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein CcmF" /protein_id="EJP72199.1" /translation="MIVEISHFLALLATGLFFLVGCFSFIRSGNIYISNLITRTYSHA FLLLLTSFAIYVWLAITDNFSVAYIASHSNSDLPTFYKISSIWSAHEGSMFLWILFLA AWGFLFNRSIDNEVVLKPLSIGIISIVLVGFLSFLLLTSNPFETILPFGPPNGADINP VLQDPALAIHPPTLYLGYVGFVIPFACALAFLINGNTEIKWEELVRKWSVSAWIFLTL GITLGSWWAYYELGWGGYWFWDPVENVALMPWLAATAFLHSISVSVKSSNLRIWTILL SISVFSLSLFGAFIVRSGIIDSVHSFANDPQRGLYLLAFIGTIIFISMVLFVIRLPVI RSAGSIKAFSKESFISINNILFGSLVFSIMLGVTYPLVYEFLFDQKISVGAPFYNAIF IPIVVIASIFLFFSIDSKWQRTVKMKFFAGPTSFSVILAVISVVLCIYFFNTESFTII ASLFAGFLIIHRYIIEIASSIFSKKYINPFSVLAHFSLGLLIVSIAFNSMLSTERAIN IKINESESYMDLNIFFKDISLVNKSNHDAIKANFLIEDSFSNSFSLSPEKRKYFTRGQ ITTETAIYVTPLRDIYLTIGDQLEDGSWIVNIQINYLIRWIWISAVFMSFAGLMLIFS KQRQKI" gene complement(653541..653951) /locus_tag="NT01SARS_0695" CDS complement(653541..653951) /locus_tag="NT01SARS_0695" /note="identified by match to protein family HMM PF03100" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein CcmE" /protein_id="EJP72200.1" /translation="MNQIRKKRLYNILLVSLFSVSGISLILYSLNSNLDYFFTPTELK EQNISSDKRIKIGGMVLEGSVFRNDSNISFTVTDYESFVKVEFKGIVPDLFQEGSGVV ALGYLNDEVFYAEEVLAKHDENYMPPNIEINNDS" gene complement(653938..654105) /locus_tag="NT01SARS_0696" CDS complement(653938..654105) /locus_tag="NT01SARS_0696" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72201.1" /translation="MFNFAFNSFEEAIYMNGHGIYVWIVLFIVVSCITIFFITYRKKI QKIKKKLNESN" gene complement(654098..654829) /locus_tag="NT01SARS_0697" CDS complement(654098..654829) /locus_tag="NT01SARS_0697" /note="identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191" /codon_start=1 /transl_table=11 /product="heme exporter protein C" /protein_id="EJP72202.1" /translation="MIKKFIHQFASPKTYLYQVNRFYPYIFYSSLVIYIISLIWGLFF TPEDFVQGNSYRIIYLHVPASFLSQSLYLAMAVASVTYLVWRVKLAAYLIIAIAPIGA MTTFIALISGSIWGIPTWGTWWQWDARITSTLILFIMYLGLISLHNSFSNFEKADKLT SWLVIIGAVNIPIIKKSVDWWSTLHQSASITLTEKPTIDVLMLYPLIGSIIGFLGLIT CLVLTSSKYQILIREKTKSWIRDYV" gene complement(654853..655500) /locus_tag="NT01SARS_0698" CDS complement(654853..655500) /locus_tag="NT01SARS_0698" /note="identified by match to protein family HMM PF03379" /codon_start=1 /transl_table=11 /product="putative heme exporter protein CcmB" /protein_id="EJP72203.1" /translation="MNELKLEYLKLKKKTRSWLGPILVFWLIMLAFPLTVEFMQDKLE IGFFSVLWIAILISMMLATEDIFIEDYNDGSLEQTIIKNTSFQFLISIRIIVYWLMIG VPISILSFIFSLGTSEDLLLSISVIPLSIISSYIFLNLFALGSALSLNKGSLLGALIT MPLALPVLIVLGKSIIAFQLGINYLEFILLLLGCLSIIIIAVPIIVSFIIKAHLE" gene complement(655497..656072) /locus_tag="NT01SARS_0699" CDS complement(655497..656072) /locus_tag="NT01SARS_0699" /note="identified by match to protein family HMM PF00005" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis ATP-binding export protein CcmA" /protein_id="EJP72204.1" /translation="MDNITSVIAENISYKVNDNKLFHNLSFSLNTGESLHIKGPNGSG KSTLLRIILGITNPTKGSISINSTKDKCYLGHKNALKNYLSLDDNILLMEFDNHPCLK KYIEILDLKRYLDVNVANLSYGQQKKLGLLRLFLNSSDLIILDEPFVGLDKETQIILT DFLTDQLKENKTLIYTSHIECDIDSKTLLLK" gene complement(656072..656584) /locus_tag="NT01SARS_0700" CDS complement(656072..656584) /locus_tag="NT01SARS_0700" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72205.1" /translation="MSRDLVTYIILGSRDRLKNIKIPQSSSTEEYIPANLEKNGNSEK KLDDLVGLAKGNIIVFLPPSSQPTKKSKEILKKISMIDISSWGWFKFSSKKKNFLSNI KKISTQVRSIPDIEQGIFFNKRIYFSVGGIGKFGTSPFKELSKRFYSRIDPQNPLPAL IIRSKNFNIF" gene complement(656591..657883) /locus_tag="NT01SARS_0701" CDS complement(656591..657883) /locus_tag="NT01SARS_0701" /note="identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326" /codon_start=1 /transl_table=11 /product="O-acetylhomoserine aminocarboxypropyltransferase" /protein_id="EJP72206.1" /translation="MSKTYTNPETIGLHAGWRKDENTNSVAVPIHQTTSFQFDDTEHA ANLFALSELGNIYSRIMNPTCAVLEDRVAALEGGVGALAVASGQAASAVAIQNLAANG DNIVASAHLYGGTYNLFKNVLSDMGIEVRFVDPADPNNFAEATDENTRAYYGEVLPNP SFEVFPISEVAEIGRPLGIPLIVDNTAAPVICKPFDHGAAISMHSTTKYIGGHGTSIG GIIVDSGNFDWEAVPERQPALNTPDPSYGGAVWTEAVKPLGPIAYILKARTTILRDMG AAMSPFNAFMFIQGLETLALRMREHSSNAEKVAEYLSNHDSVERVSYPSLMDGYAKER AEKYLTRGNGGLMGFEVKGGRDAGEKFINSLEMVYHVANIGDSRSLAIHPGSTTHSQL NEEELLAAGITPGYVRLSIGLEHVDDIIADFEQALSKI" gene 658017..658415 /locus_tag="NT01SARS_0702" CDS 658017..658415 /locus_tag="NT01SARS_0702" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72207.1" /translation="MAKKYTNFRIGGSPQKVTDDYTVWSNDLLQRIIASKTVIQPGAS TKGHKLIDSDVVYIITNGRGTMEIVEYMNSDEGHGANPSYGIEHKDSYELSAGDVILV ESGDYCKVVNDSDHDQLTYLRVFDRGGWRQ" gene complement(658423..659397) /locus_tag="NT01SARS_0703" CDS complement(658423..659397) /locus_tag="NT01SARS_0703" /note="identified by match to protein family HMM PF03372" /codon_start=1 /transl_table=11 /product="endonuclease/exonuclease/phosphatase family protein" /protein_id="EJP72208.1" /translation="MALFFSFPAQSNSSFSVMTLNVNNLFDELDDPKKDDKAYLPIEL KQTNKHINSCNRVPVNSWKNECLYLDWDTETKDAKLKNLARDILLYDETGPDILALQE VENINILEQLYRLLEPYGYIDLELLESKDYRGIDTAIISKFEIIDSTLHYIKFSGEFE DKDTRPILDSTILINDKKIKVYNVHFPAGYHDVSMRIDSLNKLKKLLQMHKMPTVALG DFNVNTEEDSELFIYNDQEDLWDVAHLIGCADCKGTYYYSYGKSWSFLDTIFVSKQRN ISYDTDSIRLHITEHNAYKDSGKPIRFNAKSKTGVSDHLPMVARIKIN" gene complement(659417..659896) /locus_tag="NT01SARS_0704" CDS complement(659417..659896) /locus_tag="NT01SARS_0704" /codon_start=1 /transl_table=11 /product="thioesterase family protein" /protein_id="EJP72209.1" /translation="METLPYKSEPIIVTEEMCDLNGHMNVNYYYKLFDSTYTSFYINE LEFDDAYFASGFSTFTLEDNIRYLREFRLDDKVFPSFMLYKANKKLLHFLGILENEKN ETAAIFETILGHIDLSKRKIVNFPEDKLKNLINVSESQRKESNLSFEVKLFIKDIDA" gene complement(659948..662260) /locus_tag="NT01SARS_0705" CDS complement(659948..662260) /locus_tag="NT01SARS_0705" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP72210.1" /translation="MVLNSPLTDNLFGRIAFVVNQRDGYMDNLYLDSKYDDRNESSVR LSLDWLINDQATLSLTTQHNSADDSRPQEHLSFCQSDPFYGCSPFERGPGNTAADYRG HYAGAIGFLAHLYPGVITNSYAGALVSDDPFRKAYLNKDPSHDQNTSFSTLEFRQEFE NYTFVAKYSYDTREFHQMNDNDGSVAVRPFPGLAKLLNPAIPNVEGIIDYLKFSEFTD SARAYDFSDVYSNDQQFELNIISDFDGAFNYTLGVYTYDGRNDNNYTVHTAGGGFLAN FGNHPYNAVFQSLGLPDMSRYGGLAFNQALARAAVGGFAPSGVCPIVGSWMLPIAAAG GAIMDVCALSGIGGTGMPAFNTPVEISGVLQDSNVRTKTNSAFGEFYFDLDEITKLTL GFRYDDQVVTNSAIACLTEANCGTPLSSWLTGTGPSTGLYDRGDTDNVKARYGTQQDE FLSYKVALQRDITDDIMMYVSFATASKPGGFNPGLASGSVPFTFDEEESETLDIGFRS SLAGGAVRLNMNLYVDNRNGMQVGAIKDTSAINWNVDAEIKGFEGNLVAFLNETLRID FNWLVSDSEVASGSAAIIDPLNPAAASGTLRYLGALDAATNNAGLLTGAVADNGQVVY KSAGYVCLTPAAPLQGIPCLNDGVAQDVSGNRVPAQQDLSYNIAITKTFLTGSGSVDI RLSRKYRGESYADIWNNDRAEIPESHNGDLLVSYRPNDGDWYVNGFVKNLDDSRDLIY LRAGSNFQGGNLYGSITEPRTFGLMFGTKF" assembly_gap 662299..662318 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 662334..664514 /locus_tag="NT01SARS_0707" CDS 662334..664514 /locus_tag="NT01SARS_0707" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00330" /codon_start=1 /transl_table=11 /product="aconitate hydratase 2" /protein_id="EJP72211.1" /translation="MSKNNKHAKKVIEEWADAKWFTEKEDIKEKIKLTVFKVSGEINT DDLSPAPDAWSRPDIPLHALAMFKMPRTGLDDPLGTIEKLKEKGNPLVFVGDVVGTGS SRKSATNSVLWHMGEEIPYIPNKKEGGYCFGGKIAPIFFNTLEDSGAFPIEMDVSKML MGQEIILEPFKGKILDANTNEVLSEFKLKTDVILDEVRANGRIPLIIGRQLTDKSRDA LGMETSNVFRRPETKDNSKSGFTLAQKMVGKACGVKGVRPGTYCEPRMTTVGSQDTTG PMTRDELKELACLGFSADLVMQSFCHTAAYPKPVDVETQHSLPDFIMNRGGVSLRPGD GIIHSWMNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAATLGVMPLDMPESVLV RFKGEMQPGITLRDLVNAIPYAALQRGLLTIDKDGKKNVFSGRCLEIEGLPNMKVEQA FELSDASAERSASGCTVKLNKEPIIEYLQSNIVMLRWMIASGYGDEKTLERRAQAMEK WILNPVLLEADKNAEYAEVIEIDLNEIKEPLLACPNDPDDIKPLSEVANTKIQEVFIG SCMTNIGHFRAASRLLNKYQETKARLWVVPPTKMDEQKLIEEGEYKIFKDLGARTELP GCSLCMGNQARVIANSTVISTSTRNFPNRMGDGANVFLASAELSAISSILGKIPTVEE YHKYMNDINPFASDIYKYLNFNEIDSYIQSANSAEIPTINIVNP" gene complement(664511..664777) /locus_tag="NT01SARS_0706" CDS complement(664511..664777) /locus_tag="NT01SARS_0706" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="EJP72212.1" /translation="MPATAELIASNKSNEDVAKEINADWLIYQTLDDLIDSVREGNPE IKEFETSIFTGKYFTPLVENYLEELEISRKDELKLQREKTKAKG" assembly_gap 664889..664908 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(664910..667702) /locus_tag="NT01SARS_0708" CDS complement(664910..667702) /locus_tag="NT01SARS_0708" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP72213.1" /translation="MSFKNLILRTSFVFLASFFVLNTVAQEIEEVVVTATKKEESLQD VALAVTALSSEDIAVQQIYDLSDIVESVPGMGSAKSVGSGSAYVIRGIGSFGVGAANT ASVVTASNGHSVNDSVFADIGFYDLERIEVLKGPQGTLNGRNATTGVINFITARPTGE TEGSIDVLVGNYDAKRTTMVLNSPLTDNLFGRIAFVVNQRDGYMDNLYLDSKYDDRNE SSVRLSLDWLINDQATLSLTTQHNSADDSRPQEHLSFCQSDPFYGCSPFERGPGNTAA DYRGHYAGAIGFLAHLYPGVITNSYAGALVSDDPFRKAYLNKDPSHDQNTSFSTLEFR QEFENYTFVAKYSYDTREFHQMNDNDGSVAVRPFPGLAKLLNPAIPNVEGIIDYLKFS EFTDSARAYDFSDVNSNDQQFELNIISDFDGAFNYTLGVYTYDGRNSNNYTVHTAGGA FLANFGNHPYNAVFQSLGLPDMSRYGGLAFNQALAAAAVGGFAPSGVCPIVGSWMIPI AAAGGAIMDVCALSGLSGPGLPAFNTPIQITGVLQDTHVRTKTNSAFGEFYFDLDEIT KLTLGFRYDDQVVTNSAIACLTEANCGTPLSSWLTGTGPSTGLYDRGDPDNVKARYGT QADEFLSYKFALQRDLTDDIMMYVSFATASKPGGFNPGLASGSVPFKFDEEESETIDI GFRSSLAGGAVRLNMNLFVDNRNGMQVGAIKDTSAINWNIDAEIRGFEGNLVAFLNET LRIDFNWLVSDSEVGSGSAAIIDPLNPAAASGTFGYLGALDAATRNAGLLTGAVADNN QVVYKSAGYICLTPAAPLQGVPCLNDGIAQDISGNRIPGQADLSYNIAITKTFLTGSG SVDIRLSRKYSDGGYADIWNNERSYIPEVKSGDLLVSYRPNDGDWYVNGFVKNLDDSR DLIYLRAGSNFQGGNL" gene complement(667872..670787) /locus_tag="NT01SARS_0709" CDS complement(667872..670787) /locus_tag="NT01SARS_0709" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="putative TonB-dependent receptor" /protein_id="EJP72214.1" /translation="MDSFYKFSFKTFASITLLFSLGAIAQEIEEVIVTATKKEESIQD LAISVEAFSAEDMQTNMINDLDDLQEVVPGMSASKGIGSGGAYAIRGTGSYGVGAAVV GAVVTAMNGHSVNTSTVFDIGFYDVERVEVLKGPQGTLYGRNAVSGVINLITARPAEE FGGYFDYDLGTYNSKRFTTALNVPMGDKVRSRFAYTSYDRDGFSENLRTGQKFDDRSA YGIRASFDFLISGDTVLEFTYDRYKGDDNRNNIGTSFCVKNLFFGCNPLERGTANITA APTGSTAALSGLVAGLVPTAWLDTYSSQPATAPDQFKYAYLNKVPEHHQIAEFTTLKL DHALSDTLTLNVKYSYGTRDYFHMNDNDYGYTSDPLPGVLGNAGMGLPPISWEAEFYS FSEIVDSSRTYEFADVDTFDQQAEITLISNFDGPMNFVVGAYQFDQRNHNNYLIQTAA LNMMKSFRSHPYSQLVFGGQFDGYGGLPFYQTLIFGLSGIDACQLPMAGPVANAVPSS ANPACLAFALAAQGITPYELPNRLGGYSNDDHVRTKSTALLGELYYDISEDTKLTLGI RYNDDKVTDNIMTCLGQIQCPNYTAADYASGVYQFNPTSVVIADSATKFKVAIQHNLA DNSMVYASYATAQKAGGNNPVIGSTPDPYAPEETGVFELGTKNIFANGAILLNAALFF NKTDKMLFSNIEDAGSVNYNIDAEINGFEGNLIAYLNENLRLDFNWLLVDSELGDIGK PIFNPLNPGNIATVLGVNPLGYTPGVQGCGGAVAPCGPGNGGPGSVDGLPFDPAGAIS YSYGLRADGVPVIMMKSFGFLCAAPATPTNILTMLTGFNPLAGASCPFAPTPVDIDGN TVPGTPELSYSLSLNRDFPMEDGVLTARLTYRYQGEREGNVFNEARAQLPEHKFFDFS MKYNPNAGNWYVGLYAKNLADDQYIGGWAASSPLQGGSYFGTYTDPRTYGVTFGRDF" gene complement(670903..671100) /locus_tag="NT01SARS_0710" CDS complement(670903..671100) /locus_tag="NT01SARS_0710" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72215.1" /translation="MLAKVFILPIRFYRYFISPLFPPSCRFEPTCSAYAIEVILKEGI IKGTYLAAVRISKCHPWHKGS" gene complement(671106..673031) /gene="thrS" /locus_tag="NT01SARS_0711" CDS complement(671106..673031) /gene="thrS" /locus_tag="NT01SARS_0711" /EC_number="6.1.1.3" /note="identified by match to protein family HMM PF00587; match to protein family HMM PF02824; match to protein family HMM PF03129; match to protein family HMM PF07973; match to protein family HMM TIGR00418" /codon_start=1 /transl_table=11 /product="threonine--tRNA ligase" /protein_id="EJP72216.1" /translation="MKLTLPDKSIRDLENGSTGFDLASDIGPGLAKAAVAVTVDGVQK DLHDPIMQDSSVSIITIDSEEGLEIMRHTLAAQVLARAVKNLYPKSKLAIGPTIKDGF YYDVECKETISIDDLEKIEKEMDKIVKTKSSITKKLLSKKDALKVFKDKDESYKEEII NDSDQENEFQLYYQDDEDFVDLCKGPHLPSLNFIGAYKLTTISGAYWKGDSSNTMLTR IYGTAWSNEKDLNEHLNNIEEAQKRDHRKLGKEMDLFHFQDEAPGMVFWHPNGWSIYR NLRNFVRKRLQENDYIEVNTPQVIDRKLWEASGHWDKYRENMFITEVDEEHANEKRVN ALKPMNCPGHVQIYNQGIKSYKDLPLKYAEFGLCHRYEPSGTMHGLMRVRAFTQDDGH IFCTEDQIESETGLFIEFLSNLYADLGFKDFDIKLSTRPEMRVGSDEIWDKAEEALEA AIKNLGYPYRIDEGDGAFYGPKLDFVLTDAIGREWQCGTFQLDFNLAERLDATYIGED GKKHIPVMIHRAVLGSFERFIGILIENYAGKLPFWLAPQQVVIASIVSDANDYALEIQ QSLKDNKIRCEVDLRNEKISYKVREHSTKKVPIILAIGKKEMADKTVSLRRIGSNESS VLSLDDAIKDITKESKA" gene complement(673071..674012) /locus_tag="NT01SARS_0712" CDS complement(673071..674012) /locus_tag="NT01SARS_0712" /codon_start=1 /transl_table=11 /product="putative phospholipase/carboxylesterase" /protein_id="EJP72217.1" /translation="MCLALFLVSCSGSSGMNNESDEINQTNNNNLINFSCNVTSVNTE NCNVTQNQNTREFYIFNPINNESLNNAPVVFSFHGGGGTATENMEYSGFRQIAQEEKF ILIYPQGQYFSNKDSTGWIFNENNNITDDLFFINELIDWLYENKRINLDRIYATGFSV GAVMSYDLACKLSNKIAAVAPVAGTMSLDTYETCRPEKSKSIIHIHGESDSILSPSGS EYLKSFLESIEFWANFNQCSSSNTEGISDTNNDGYSGTIINYNNCSNQVAVTGILLEN YDHQWPSIDSQKNQSDIDAASYIWDFFKKFDVNGLIK" gene complement(674024..675868) /locus_tag="NT01SARS_0713" CDS complement(674024..675868) /locus_tag="NT01SARS_0713" /codon_start=1 /transl_table=11 /product="membrane-spanning protein" /protein_id="EJP72218.1" /translation="MITLLNKNKLFLYCLVVIISSSFFASLIQTSFGKVDVKLMNLKT PDGQNLVYDLYKPSIATENDKQPFIVVVPGFQRSKEALSNIAIELSRRGYVVALIDPY AQGMSSSSLSRLAATTQGYGMFALVDYAYAENFSFIDINKIGSTGHSMGGNAAIRGAD YFGKEAIRSGKKSKLDSVYISGYVLTLRENILRDSKSNMGVSYALYDEGAFRNDLQGW DAGNMKIAPESLRTVNSVLPKDKKVTEVELGKYYGERSNNTLRVIFNEELLHPFQPYN KEATKNQLDYFDKVFGAPISINSNNQIWQYKELFTLINMIVSLLMLIPIAKLFLSLNF YKDIVKDIPASLPEQTSKSKMIFWSVFFLSALIACISFIPMVDVAKILFYESANRELT WFFPQRMNNSVMLWAAFNGSIGLVIFFLSYYFFGRHHGVNTNSWGLQINKVEFFKTIM LGLSIFICYYLILYFVYFLFHVDYRFWFMGVRIFQPEMLLVLVMYFPLFFIFFFSNSL RVNGAMRFKNQSEWKSRLIAGFANSLGLMMIIIIQYVTFAWTGTVFWTTNWLSVNLLF GIVPMMFILPYFNRIFFQLTGRVYLGPIVTCLIFIMILSTNTVVYLPL" gene 675897..675973 /locus_tag="NT01SARS_0714" tRNA 675897..675973 /locus_tag="NT01SARS_0714" /product="tRNA-Arg" gene complement(676020..676760) /locus_tag="NT01SARS_0715" CDS complement(676020..676760) /locus_tag="NT01SARS_0715" /codon_start=1 /transl_table=11 /product="antibiotic biosynthesis monooxygenase" /protein_id="EJP72219.1" /translation="MKYIITFLITVSFATMAQEPELEGYTSVYANYTFCKLNDGATFD DVRPFVGKYVENANSFENEVDLAVLFPLYASDPDHDFFFVAHADSREEMGAFNDKMFQ IFAQSEDNAMPPMDCDVELEAFQRVGPSSSDAAPQGRTIVNYWPCKYTRGFDRRAMRE ARRQAALKHYAAGAEGGYRYIMTNSGTDREQDVDFWFSTSAPSEAARGKNIDLWWSEI RNSDEWAEVRKHASCQDSETYAAYPLKQ" gene complement(676773..677198) /locus_tag="NT01SARS_0716" CDS complement(676773..677198) /locus_tag="NT01SARS_0716" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72220.1" /translation="MRFLLIATLMLSFTAYAQEESSREFADGVIELTTVKVKTNFLQD YLDGIEKTWVAAAKIQKEMGIISDYNVYIGNDGSTVYLTTAYPSWANKAPWSEEQTAE FQEKFRKTISQEDNVELSQSYEDIREIVSVELIGRLVFK" gene complement(677292..677891) /locus_tag="NT01SARS_0717" CDS complement(677292..677891) /locus_tag="NT01SARS_0717" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase-like FMN-binding protein" /protein_id="EJP72221.1" /translation="MTSSLKEQLPDVYEDIQDTLESAKLILTDAVPNAKTLFHTPVVS LSNGRDISSRVMVLREFDLDKRILRFHTDNRAAKIQVINESNLASVVGYDPDLKVQIK MTGNVDVHIKDKVTEDAWSESTSRSKKCYSVKGGSSLEIQNPADYDIKDFEVEEGYEN FAVLIFNFISLEFLYLKSSGHRRALHNWEGKYTATWLVP" gene complement(677888..679267) /gene="cysS" /locus_tag="NT01SARS_0718" CDS complement(677888..679267) /gene="cysS" /locus_tag="NT01SARS_0718" /EC_number="6.1.1.16" /note="identified by match to protein family HMM PF01406; match to protein family HMM PF09334; match to protein family HMM TIGR00435" /codon_start=1 /transl_table=11 /product="cysteine--tRNA ligase" /protein_id="EJP72222.1" /translation="MSNHLDYHLFNTLSGKKEILKPSDPQHVKIYACGPTVYNYAHIG NARMAVVFDTFVRTLRFIFPKVTYVSNITDIDDKIIEAAVEQNVEISVITKKFTKIYN EDMAKLNVLAPDVQPKATEYIPEMIDLIKELIEKDFAYEKDGHVLFHVPTYENYGKLS NRIKDEQIAGSRVDVADFKKDPADFVLWKPSTGVQPGWESPWGIGRPGWHTECSAMSE KTLGLPLDIHGGGRDLIFPHHENEIAQSCCTAAENSNPESYAKYWMHNGFVTIDGEKM SKSLGNIILVNELTQKYHGEVIRLALLSTHYRQALDWNDNVIHQAKKLLDKLYSLLNE LNDVKESKEPDNDLIEILLDDLNTPGLIANINKLIKNAESREEDDKPNLKSNLLLIGK LMGILEDQSYNQISDEFKDKVDSLIEDRSNAKKKRDFELADKIRSELIDLGVEINDSP EGTTWKVVK" gene complement(679272..679895) /locus_tag="NT01SARS_0719" CDS complement(679272..679895) /locus_tag="NT01SARS_0719" /note="identified by match to protein family HMM PF02545" /codon_start=1 /transl_table=11 /product="septum formation protein Maf" /protein_id="EJP72223.1" /translation="MTRSLESSSIKPKVPIILASGSESRKQMLEEAGILFDVKVSDTD EDKIKKQISSLPFSEQVVDLAKAKAESVSREFNEAAVIGGDQMCVLGDRLLHKPGSKE RAVESLKLLSGQKHYQHSGVCIFKNQSCIWQYSETVELKMHSLTETEIINYVEMENPI NAAGSYKFESLGCNLFSYVNGSSHTVRGMPLIPLLNALRELNIISLE" gene complement(679896..680540) /gene="folE" /locus_tag="NT01SARS_0720" CDS complement(679896..680540) /gene="folE" /locus_tag="NT01SARS_0720" /EC_number="3.5.4.16" /note="identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I" /protein_id="EJP72224.1" /translation="MSKKVSKDEALKAVKTITKEISESSLEAEALEAVRTLILWAGDD PEREGLVDTPKRVVKAYKEFFSGYEEDPEEILSRTFEEVEGYDDAVIVRNIRVESHCE HHMVPIVGVAHIGYIPKNRVVGISKLARLVDLFGKRLQTQETMTAQIADTIDKVLQPK GVAVVIDANHQCMSTRGVHKTESSTITSRMLGTFRSDNKAREEFINLIHSPKNY" gene 680694..681344 /locus_tag="NT01SARS_0721" CDS 680694..681344 /locus_tag="NT01SARS_0721" /note="identified by match to protein family HMM PF00753" /codon_start=1 /transl_table=11 /product="glyoxalase II family protein" /protein_id="EJP72225.1" /translation="MLKAIVQPVTPFEQNASILYCSETKKCAIVDPGGDIEILLKIAK DNELVPEKILLTHGHIDHAGGATEIAQILKVEIHGPHKDDKFLLDSLAEQGKMFGLNS KDCSPDVWLNEGDIVTIGKEKLETYFCPGHTPGHLIFYNLESKLAIVGDVLFCGSIGR TDLPGGNFDDLIQSVKDKLWPLGRDIEFIPGHGPMSTFEAERQSNPFVSDAVLGLS" gene complement(681345..682145) /locus_tag="NT01SARS_0722" CDS complement(681345..682145) /locus_tag="NT01SARS_0722" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="short chain dehydrogenase/reductase family oxidoreductase" /protein_id="EJP72226.1" /translation="MKNEYALITGASSGIGLEIAKRLASDGYNLVLTARRAELLEDLA REIKQSTGVEVDTISKDLSDANAPQEIYDFCQSNQYKVSVLINNAGYGIKTSFHQTSI EDEEKFIRVLGTSVIMMTKLFIPNMINQGGGKVMVVSSVASFAAPSAIQPLYGPIKTF MNRFSDCININYKHKGITSTSVCPGFTVTGFHTASGVQEEMDRVPKFMVFSAERIANE GVDAMYAGKRLCVPTKTYKFLVFLLKNIPQSVFNLLGKSLAPGRYDRK" gene 682216..684696 /locus_tag="NT01SARS_0724" CDS 682216..684696 /locus_tag="NT01SARS_0724" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72227.1" /translation="MNSFNNIRSYIANFITLSVLIFSFGLNAYPEMMPENENEVEENA SEQPKMPKGPMSKKKEYKTIDEFLEDGEYKSIDGFMNILHETEKDKYFMILNDDQLNK EFIYFTYILNGPSDAGPSGGDMGEAFILEFRKFKEDIGIYKKNTKFAFDDSNKISQSK LTNIIEAFLGRFSVIVKEDSRYVINIDKMFLSEMLVAITPNIPKEYMEYYNLILGRPD SSKTFIDEVRSYEKNTSFKVRYGFYNPKPKSGRSIDAITDKRYTFVDGLHLFVEMPDD KFEPRIADQRIGYFSEKVTDLSTYDSNNARDLINRWRLVKKDPDAELSEPEQPLVYWV ENSTPEEIRPFVVKGIEAWNKAFEKAGFKNAIVAKIQPDDAEWDAGDVRYNVVRWAST PSPRYSGYGPSVANPRTGEIIAADIVQEFNAIKRGYTYRKLWGYTEENDPLEQWIVSL TMHEVGHTLGLRHNFKSSWVYDAKEVHDVSITGDNHIGSVMDYDPINLAPEGIPQGNF FPTGPGFYDIWAIEFGYTPSFTDEERENLLSKSTQPEYIFGTDGDAMSSPGVNIDPRN YRGDMSNDPITYTSDRIKTLNAKIAELPEIFLTDGETSTEFRSNFYRLTTEKGRFLDG VSRLIGGVYSNRIVNDPDIDMTPFEAVPYEDQKRAMSLIKEQLLSNDAFSFDEKLLKY LQSEKRAAYSPRRGGNEDPQLHDLVLGLQGRAIAHILHPVVMKRLVDSSQYGNTYMPD EVLSDLFSAIFVQREMPTTFKMNLQSKYVDSLISALDDDSYDEISKSAIYASLVDIKD FTRIPYGDSKTKVHYRFLNWKATKALEN" gene complement(684693..684959) /locus_tag="NT01SARS_0723" CDS complement(684693..684959) /locus_tag="NT01SARS_0723" /note="identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589" /codon_start=1 /transl_table=11 /product="methylated-DNA--[protein]-cysteine S-methyltransferase" /protein_id="EJP72228.1" /translation="MKKPTDFQRLVWKEIEKIPYGETRSYRDIAIRIGRPRSYRAVAN ACGKNPLPIIRPCHRVICSNGEIGGYSINGGTALKKALLKCESS" gene complement(684960..686210) /gene="rocD" /locus_tag="NT01SARS_0725" CDS complement(684960..686210) /gene="rocD" /locus_tag="NT01SARS_0725" /EC_number="2.6.1.13" /note="identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885" /codon_start=1 /transl_table=11 /product="ornithine aminotransferase" /protein_id="EJP72229.1" /translation="MPSSLQDEYIKKESLYGAKNYSPLSVVLNKGEGAYLWDVDGNKY LDMVSAYSAVSHGHSHPKLIEVIHEQSKKLSITSRAFYTEPFADFLEKLSNLSGFESV LTMNTGAEAVETAIKAARRWGYFSKGIPEDKAEIIVADGNFHGRTTTIVSFSTDDAYK KGFGPFTPGFDAANFCGSCECDSIEKCLSINTFEKKINENTCAILVEPIQGEAGIRVP REGWLKELRALCTEKNILLILDEIQSGLGRTGKLFAYEHENIKPDGLILGKALGGALL PISAFLSSKEIMNHFKPGSHGSTFGGNPLASKVASKALDLLFEEKLIENSKTMGDYFL SKLKDIDSKIIKEVRGKGLWIGMELNNAEVSAKNLCMMLLNEGLLCKETHETVIRFAP PLMIGKKDIDWALNKITKVITSIK" gene 686254..687150 /locus_tag="NT01SARS_0726" CDS 686254..687150 /locus_tag="NT01SARS_0726" /codon_start=1 /transl_table=11 /product="amidinotransferase" /protein_id="EJP72230.1" /translation="MSKQSTSHLFMIEPESFYSNEQTSYTNHYQEDASNEDIADITKK ALVEFHNLKDKIEAKGIQVTSLKGSKECPDHIFPNWFMTFDNKTMQIFSMLAPNRRKE KKLSMIEHLSETYELTADFSYLENKEIFLESTSSMVFDRVNRIVYAGISPRTNAVQLI IWCRNNDFELVLFETESHTGSPIYHTDVLMYVGTDIIGICFDVIKEEHVDYVREKVNA HHDVVELTSEQIQNFSGNAIEAKNEAGELFLIISSRGFNALNDDQVNKLLKSYKEIIH SDIPTIEKYGGGSARCMLTELF" gene complement(687188..687973) /locus_tag="NT01SARS_0727" CDS complement(687188..687973) /locus_tag="NT01SARS_0727" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="EJP72231.1" /translation="MSNYKYILSAFVILFIVSCAQEDAAVSGDTGPIYKGPYYNEFLA CNAGPAFDDGIQEMLAAWQELPSAAGLGWAGVYAPVGEDHRFSNGWWELEWDSKESSD NAFSNPSPEFLAWSEKYADVMTCDIEGRFPWTFYLPRDPASFGEVMGEQGYFASEFLA CNFKEGKVRQDLRAAVVQFNEYLDQNGSANPYFFGVYFPEFDGAEADFLWGNWHASFD SMKSGNADWEENGKAMQAKFDEISTCISPDYYDSYELYNNPST" gene complement(687973..688374) /locus_tag="NT01SARS_0728" CDS complement(687973..688374) /locus_tag="NT01SARS_0728" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72232.1" /translation="MDQFMNEMAIWNGMNTAFISNAIFFAACSFLIWVGFRFTSRIYY DGDVNLLGKIFTTLFCLSIAVFTLVTMAQGQNIAFGYANAFSALSEVQDISSNAENFV AMADGKLGIVQWVFLGSIVVMQMTQIWVKKS" gene complement(688494..689345) /locus_tag="NT01SARS_0729" CDS complement(688494..689345) /locus_tag="NT01SARS_0729" /codon_start=1 /transl_table=11 /product="methylenetetrahydrofolate reductase (NAD(P)H)" /protein_id="EJP72233.1" /translation="MANEQVVSFLNDFSIEVTPNAAKKIDNFSDYLSPGTLIYIAHIE GTPIEETVATAKKITDQGFKAMPHFPARIIKDKDTLKDWIGRYKNEAGVENALLIAGG ANKPYGEFDSSIQLIESELFDKAGFKNLHIAGHPEGSKEIDPDGTTANVDQALSWKNE FSKRTDASMAITTQFCFDSNSVIEWVNGIQKSGIDIPVHIGIAGPAKLQTLLRYSIEC GVGASIKILQKRAKDITKLLLPYKPTQIISELAAYKSSNPDFNIEKVHFFPLGGIKQV SQFVKEI" gene complement(689367..689456) /locus_tag="NT01SARS_0730" tRNA complement(689367..689456) /locus_tag="NT01SARS_0730" /product="tRNA-Ser" gene complement(689510..690844) /locus_tag="NT01SARS_0731" CDS complement(689510..690844) /locus_tag="NT01SARS_0731" /note="identified by match to protein family HMM PF01979" /codon_start=1 /transl_table=11 /product="dihydroorotase" /protein_id="EJP72234.1" /translation="MYDIILKNCKIVNENAIYESDVAIKNARIELIQSSIDQEAKQII DIAGRYLLPGLIDDQVHFREPGLTHKGDIATESRAGLAGGVTSYFEMPNVNPTTTTNE NLTKKFEMASTRSLSNYSFHLGGSNTNIEEIKKVDIHQAAALKVFMGASTGEMLVDSL DALDDIFHYSPLIVVTHCEDPKRVKDREKLFDEKYGDKVSAEHHHLIRDDQSCYLSSS LAVNLAKKYDADLHVFHLTTEKEMELFSKGEVDNKKITAEVCVHHMYFNESYYSNLGN QIKCNPSIKYESDRQALISALLDDKIDIIATDHAPHTWEEKSQNYVDAPAGLPLVQHG LQILMDLYHQDVISLETIVKKTSHNVAKRFQIKDRGYIREGYYADFVILDADKSYTVS NENILYKCGWSPFKDHTFQSSIFMTIVNGIVAFENGKVKENLPFGMQIEFDR" gene complement(690845..692059) /locus_tag="NT01SARS_0732" CDS complement(690845..692059) /locus_tag="NT01SARS_0732" /EC_number="2.7.2.4" /note="identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657" /codon_start=1 /transl_table=11 /product="aspartate kinase, monofunctional class" /protein_id="EJP72235.1" /translation="MTKIIVQKFGGTSVGSVERIDAVADIIADASKTAKIVVVVSAMA GETNKLVNLAKNFSENPDKREFDALVSTGETVSSALLSLALHSKGIKAKSYSASQISM KTTDTYSKAKILDVNSEKILQVIKEETIPIITGFQGVTEDGDITTLGRGGSDTTAVAI AAQIGAERCDIYTDVDGIYTTDPKIVPNAKKLDSITMEEMLELAGQGAKVMQTRAVEF ANKYNVPVRVLSSFNEGSGTLITLEEESMENALISGIAFQKDQVKFTLHGVGDIPGTA FKILGPISDAEVEVDVIVQNVSVDGKTDFTFTVPYEDQETVIKIIDSIKDEVKFKQMM VDSDIAKVSLVGVGMRSQAGVASRAFKALSENEVNIQIICTSEIKLTMVIDKNLTDKA VKILHEEFDLEN" gene complement(692067..694637) /gene="alaS" /locus_tag="NT01SARS_0733" CDS complement(692067..694637) /gene="alaS" /locus_tag="NT01SARS_0733" /EC_number="6.1.1.7" /note="identified by match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM PF07973; match to protein family HMM TIGR00344" /codon_start=1 /transl_table=11 /product="alanine--tRNA ligase" /protein_id="EJP72236.1" /translation="MKTSEIRQSFLDFFNSKDHEVVSSSSLVPNNDETLLFTNAGMVQ FKDVFLGTEKRNFSRAVTSQRCIRAGGKHNDLENVGYTLRHHTFFEMLGNFSFGDYFK EDAIKYAWEFLTEVLKLDKDKLWITVYKDDDEAEEIWKNIIGVAPDRIARLGDDDNFW SMGDTGPCGPCSEIFFDHGEHIDGTPPGHDGDEGDRFVEIWNLVFMQFNRDENGKTSN LPKPSVDTGMGLERIAAVMQGVNSNYETDLFLDLIAASEKVLGNKNSTSHKVIADHIR SSIFLILDGVIPEKEGRGYVLRRIMRRGIRHGYKIGAKKPFMHLLVKDLVNLMGSAYP DLESKEKDITKMIHDEEIKFFETLEKGINILDETINSMKGKTISGDVAFKLHDTFGFP YDLTADIAREKELKVDEKRFNECMDMQKQTSKASSSFVSSLPAAAGIDQTVFLGYEQL ETNSKVLVIWKEQSRVDEAKKDEEIFIACDQTPFYAEAGGQIGDKGIFASKSSTGTIL DCKKQGKVYIHKAVVKKGKINKGDVIKMSVEKEKRAAIAIHHSATHLVHAALREILGD HVQQKGSLVDENKLRFDFSHSKPLSSEEILAIETIVNKEALKNLEVKTELMKLDDALK SGAMALFGEKYDDDVRVLTMGENSYSVELCGGTHVERTGDVGFFAITSQSSVASGIRR IEAVAGIKALEYINTVRNATSSIQKILNVSVDDIEEKIKSLLDENKNLKKADKKNKNV VIKSEKHKIEDWSLIIEQVQVSDTKDLRNVVDNHKNTNDRLCVVVFSVDDDRVAIVSG VTKNLSETISAKDVVNIIAGNIGGKGGGRSEFAQGAGETKNIDEFVTSILNSVQSLAT " gene complement(694627..695157) /locus_tag="NT01SARS_0734" CDS complement(694627..695157) /locus_tag="NT01SARS_0734" /codon_start=1 /transl_table=11 /product="transferase family protein" /protein_id="EJP72237.1" /translation="MINIDIDNKKLQTDGENYWIAPNATIIGEVVLKKDASVWFNAVL RADNEPIFVGEGSNVQDGAIIHTDPGYACSIGKNVTVGHMAMLHGCEVGDGSLIGIGS VVLNGAKIGKNCIIGSKALVTEGMDIPDGSMVLGIPGKITKTLTDEEQSIVSIGAAHY VENYKKYKKLKINNEN" gene complement(695144..695743) /locus_tag="NT01SARS_0735" CDS complement(695144..695743) /locus_tag="NT01SARS_0735" /note="identified by match to protein family HMM PF00293" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase 15" /protein_id="EJP72238.1" /translation="MLDSIKQKLEQINLIEVTKYKKAGVLILLLNDIETNKIQILYTK RSSKLSTHSGEVSFPGGMWEEEDASLLDTAMRESNEEIGLKISNVEMLGKLNYLLSRH KIEVNPYVGYLMNRQEFIGNFEIEEIFTVPLTFLLDNNNVIYKEFKRNDLKMSMPSWV YNGHRIWGLTALITADFLNICYEANINTDIDLIRGYDQY" gene 695796..696332 /locus_tag="NT01SARS_0736" CDS 695796..696332 /locus_tag="NT01SARS_0736" /note="identified by match to protein family HMM PF00293" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase 23, ic" /protein_id="EJP72239.1" /translation="MKYCSNCGNPNLEFKVPEGDNLKRYCCDECETIFYTNPNIVVGA LCMRDGKILMAKRNINPRIGLWTLPAGFMENAETLQDGALRETFEETGSKAEIIMPYT MFSLPHINQVHMFYLANLLDDNFGPTIESSEVKLFKNNEILWDEIAFPTVEKTLKYYL EDLEKDNFIFREEDIKLW" gene complement(696333..700031) /gene="purL" /locus_tag="NT01SARS_0737" CDS complement(696333..700031) /gene="purL" /locus_tag="NT01SARS_0737" /EC_number="6.3.5.3" /note="identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR01735" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase" /protein_id="EJP72240.1" /translation="MQIESDDIDIDGLKDILSADEFQDDFSFYVGPRLGTISPWSSKT EDIVKNVGFKNIKRVERLCGFKLDQLVEESHDFSMFYDRMTQEVYKSKYDFENLFASE EPRPLNYVDILKNGKEALEHANTSFGFAMSSEEIDYLFNFYKKENRNPTDAELMMFAQ ANSEHCRHKIFNAKWDIDGNQMNNSLFDLIKDTSKASPDGIISAYKDNAAIIEGEKIE RLHLNESNTYELKQDIINSTIKVETHNHPTAISPYPGASTGSGGEIRDEGATGRGAKP KIGLVGYNVSNLRIPGLQRSWEKEEKKPSRIASPLEIMTDAPIGAAAFNNEFGRPATL GYFRSFETEFNENEAYGYHKPIMLAGGIGEVRNANNFKLQIAEDYLVIVLGGPAMLIG LGGGAASSVSSGESDVDLDFASVQRDNAEMERRCQEVINKCSSQENNYIEFIHDVGAG GLSNAIPELAKDSDLGVYIDLSKIPNADKSMSPMEIWSNESQERYVLAIHKDNQASFE KICIRERCEYAIVGHTTKEKSVKLFDANKNNFPVDVPLSMLFGDLPITKMKVSQTLKE EIKEIEPDDYDLSEVLIKTLQHPTVASKSFLITIGDRTVSGMVARDQFVGPYQVPVSD YSLSMRSYTSKKGEVVSIGEKPTIAISNAGASMRMALAEALTNMAGVVIKGLNYVQVS ANWMAASGDNQEDLNLRNGVEALSKLSSKLKISIPVGKDSLSMKTKWNESDAEFEVKS PLSGIITAMAPVDDIALCVTPEIDIKAETKLVLVKLNQKTRLGGSIFSEVIQETFNET PDIDDADKFKDMFYLIQDLVKNKNIIALHDISDGGLVTSIAEMCFTKKIGATIDISDF ENINQTLFNEEIGFVIQIENSQLEKVLKLFEEKNLFAKEIADLNNNNFVIKRNKKIIF EEKIIRLEKYWRETSHAIQSIRDNKEIADSELGLLDSSEYTGLNSNVSFDESQIISFK NIKAKPKVAILREQGVNGQNEMAAAFTLAGFEAQDVHMQDLLDGEISLKNFNGMAVCG GFSYGDVLGAGGGWSKTIIYNEKVKDQFQAFFQDANKFTLGVCNGCQMLSNLKDIIPG GENWPSFERNFSDQFEARLVQVKIEKTNSVLLQDMEGWTVPVASAHGEGRAKFDENSL IKLKKNNQIAMRFVDSLGKDTEIYPLNPNGSPEGITGITAGDGRITIMMPHPERVFRK HQLSWYKKDWKEFSPWMQIFINANNFVK" gene 700239..700943 /locus_tag="NT01SARS_0739" CDS 700239..700943 /locus_tag="NT01SARS_0739" /note="identified by match to protein family HMM PF01464" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase F" /protein_id="EJP72241.1" /translation="MYRFFLVPILATLIAGCSYINKEISCDQILSDTYSISSLNNFEK NKFKDLLIERYPKYDQMFQEASEETMIDKNLLAAISFQESQWDPRAQSNMGVRGMMMV TLETAALVGVEKRLNPEQNIKGGSRYFAMLLEKNKVGITEADKLSIVLASYNLGPTNI LKVASLIDENIENVSWLEIEEKLKTLKGEDLNLTDSVSYTRGQQAIDYVGRVKEYYQL MSAHSCVQPKDQLIFF" gene complement(700918..702927) /gene="uvrB" /locus_tag="NT01SARS_0738" CDS complement(700918..702927) /gene="uvrB" /locus_tag="NT01SARS_0738" /EC_number="3.1.25.-" /note="identified by match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM TIGR00631" /codon_start=1 /transl_table=11 /product="excinuclease ABC, B subunit" /protein_id="EJP72242.1" /translation="MTKALKVVSDFEPAGSQPDAINNLVSGLQDGLLHQTLLGVTGSG KTYTMAKVIEETQRPAIIMAHNKTLAAQLYGEFRDFFPNNSVEYFVSYYDYYQPEAYV PTSDTYIAKDASINEHIEQMRLSATKALIERKDTVVVATVSSIYGLGAPESYLKMVVH LDRGDMISQRDLVLRLSALQYTRNDLDFRRATFRVRGDTVDVYPADSDKEALRIEFFG DEIERISWFDPLTGVVINEVPRVTIFPKTHYVTPKETVTNCIPDIKDELKSRLDFLRN NNKLVEAQRLEERTNYDIEMMRELGYCQGIENYSRYLSGRKPGESPPCLFDYIPKDAI VFIDESHVSVPQIGAMYKGDRSRKETLVEYGFRLPSALDNRPLKFDEWEMLAPQRIYV SATPSRYENEKQDNLVELLVRPTGLTDPDIEIRPASSQIDDVIGECNERVTMKERVLI TTLTKRMAEDLTDYLNENNISARYMHSDIDTVERVEIIRDLRLGKFDVLVGINLLREG LDIPEVSLVAVLDADKEGFLRSDTTLIQTIGRAARNLRGTAILYADKVTGSMQRAIDE TNRRREIQEKFNSENNITPKSISTKVKDIMEGARIIKGNTKKKKEDIEKIVPFKILDD TVENITETLQKLEDEMFGLAKKMEFEKAAVCRDKITSLKRKLIDL" gene 702972..703048 /locus_tag="NT01SARS_0740" tRNA 702972..703048 /locus_tag="NT01SARS_0740" /product="tRNA-Asn" gene complement(703063..703479) /gene="arsC" /locus_tag="NT01SARS_0741" CDS complement(703063..703479) /gene="arsC" /locus_tag="NT01SARS_0741" /EC_number="1.20.4.-" /EC_number="3.1.3.48" /note="identified by match to protein family HMM PF01451" /codon_start=1 /transl_table=11 /product="arsenate reductase" /protein_id="EJP72243.1" /translation="MNILFLCVGNSGRSQIAEGLARDMLPKSYDIRSAGSKPAKNVHN DAIFVMNEIGIDISSNKTKSIESLDKEFVSKLDHVITLCAEEVCPIVPESTNTLHWPN EDPDNDTYNKAQSENAFRKTRENIFNLLKKFFIMNS" gene 703543..704661 /locus_tag="NT01SARS_0742" CDS 703543..704661 /locus_tag="NT01SARS_0742" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72244.1" /translation="MLREIKVEDMIGNLEGRLGDDDYSEPLEILINSANNHNKFNLYG AFAFKNQLKDRLKMRSRLNDFMQNKVLPSPADPIFVTGLPRSGTTFLFNLLALDKNHR SPKYWEIMSPLPLVKTDFDIKKRQWKINAELKFARTIIPKLRYMHHIRAQTPEECELL ATINVRSFVYMCMANVPEYVEYLKDCSFNSVFAWHKKFFQMLELSGRPKRWLLKDPSH IGHIPEILSTYPNAKFINIHRDPMESIASFCSLAKNIRSAFSKNVNPKEIGDVILDFW QHNLNKGIEAKKKLSEDQIVDISYSDFINDPLVTIKNVYIKLGLDIDIQTENRMKKYL LGQNEIKKQKHIYSLEDFGLNEEKINIHLENYIMNNNF" gene 704694..705311 /locus_tag="NT01SARS_0743" CDS 704694..705311 /locus_tag="NT01SARS_0743" /note="identified by match to protein family HMM PF00160" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase Cyp18" /protein_id="EJP72245.1" /translation="MNIYKFSTSFFIATFLILVSSCAENNNVAEVEQQKEKVMTEVII KTSLGDINLELNNEKAPITVENFISIAESGYYEGTIFHRVINGFMIQGGGLTADMSNK SSGTSPIQNEANNGLSNDRGTIAMARTMDPHSATSQFFINHKDNGFLNHTGETSQGWG YAVFGVVTDGMDVVDQIAEVATGSSGAYQDVPQEVITIESVVISE" gene 705308..706018 /gene="lpxH" /locus_tag="NT01SARS_0744" CDS 705308..706018 /gene="lpxH" /locus_tag="NT01SARS_0744" /EC_number="3.6.1.-" /note="identified by match to protein family HMM PF00149; match to protein family HMM TIGR01854" /codon_start=1 /transl_table=11 /product="UDP-2,3-diacylglucosamine hydrolase" /protein_id="EJP72246.1" /translation="MKPRFVSDIHLSEKRPDLINAFKAFLNESKEACTHLFILGDLFE IWIGDDDDNSFHKDIKTTLSEFAIDGPEVFFMHGNRDFLIGKTFANEVGISIISDPYS LDINGLKTILSHGDFLCTDDSDYIEFRNNVRSEEWQKDFLAKSIDERNEIANLLRSES KNATSEKSLEITDANLETVNNFIQENNPDIFIHGHTHRPKIHQHNSTKRVVLGDWDKY GWYLSIEENSLNLKEFKI" gene 706078..706506 /locus_tag="NT01SARS_0745" CDS 706078..706506 /locus_tag="NT01SARS_0745" /note="identified by match to protein family HMM PF00717" /codon_start=1 /transl_table=11 /product="protein SamA" /protein_id="EJP72247.1" /translation="MKVNYIGKISEENLPAIFVPYFLESVHAGFPSPASDYIESPIDL NKHLIKNGAATFLVRAQGQSMVGSGITDQAVLIVDRSIKPSHNSIVVATIDGEFVCKR LKLKPRMCLMPDNPEYPPIFINHGQELEIVGTVTAAINKF" gene 706506..707768 /locus_tag="NT01SARS_0746" CDS 706506..707768 /locus_tag="NT01SARS_0746" /note="identified by match to protein family HMM PF00817" /codon_start=1 /transl_table=11 /product="protein ImpB" /protein_id="EJP72248.1" /translation="MAFALVDCESFYASCERIFRPDLKNIPIVVLSNNDGCVIARSTE AKKMGIGMGVPWFKVRESFLKENGQVFSSNFTFYGDMSARVMNILEGFVPRVEIYSID EAFLDFDTLKQNYNLYDFSCHIRTLVRQWTGIPVRIGIAPNKTLTKIAINEIKRRNIP TSVLHLSNKKEIRNALAHTSVGKVWGVGRKLTEHLNKAGINTALDLAEINPQGIRRKF SVVLERTVRELRGEKCLDIDDDISSKKQIVVSRSFGQRISNLKELRPIVSNFAVRAAE KLRNERQKCSQVSVFVRTSPFNRNKPQHSDLKTIELFTPTNDTRDILAAAKKGLLPIF RSGYDYAKAGIILNKFSDEKTKQYSLFKDPNEPKQNMRLMKYLDQMNNYETQIYYASQ NTKKWSPMKQNMTSPKYTTNWYELPKVN" gene complement(707779..708153) /locus_tag="NT01SARS_0747" CDS complement(707779..708153) /locus_tag="NT01SARS_0747" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72249.1" /translation="MSDKQLNVFDEVIEVCCTNPITGFYRDGFCHTDEFDRGMHVVCA KVTNDFLNFSKSRGNDLSTPRPDLNFPGLKEGDSWCLCAERWKEAYESGFAPKIFLKK TNKKALKIIDFAILKEFALDLS" gene complement(708156..708395) /locus_tag="NT01SARS_0748" CDS complement(708156..708395) /locus_tag="NT01SARS_0748" /codon_start=1 /transl_table=11 /product="bifunctional protein FolD" /protein_id="EJP72250.1" /translation="MKLFLFFIFFIPTLSFANDLSDQRKVSDLSVEELTEIVRMIVEE SIEQCVVSGTMQGRAKVNLKVEGEVVAKMTCEFNN" gene 708575..708790 /locus_tag="NT01SARS_0749" CDS 708575..708790 /locus_tag="NT01SARS_0749" /codon_start=1 /transl_table=11 /product="putative thiol-disulfide oxidoreductase DCC" /protein_id="EJP72251.1" /translation="MEDKYLKKLHVSFDNGSELSGVDAFIYVWKNTKGYNWLGKLISV PPIKQIAKICYAIIAQLLFWRFKLFVK" gene 708904..709155 /locus_tag="NT01SARS_0750" CDS 708904..709155 /locus_tag="NT01SARS_0750" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="ferritin and Dps" /protein_id="EJP72252.1" /translation="MEDMSIDSNEVCSILNEIMEYELAGVVRYTHSSMMVSGPYRLPI VTFLKEQAAESLLHAQLAREKIAGXXXXXXXIFYNSIAF" assembly_gap 709109..709128 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(709326..709901) /locus_tag="NT01SARS_0751" CDS complement(709326..709901) /locus_tag="NT01SARS_0751" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72253.1" /translation="MGHLVPFKHEEFESWTKSLQLGLRTYHEPSNLIIGGGLDDVWHN LETDEIHVVDYKSTAGRKNEDGTALNKISLSGVYKESYKRQMDMYQWILKEKGFKVSD TSYFVYVNGDQHFENGMLEEATDKGIMKFDVQLIEYIADSSWVEEKILNLKSCLEEKV CPKHAESGFGPKGDKQCEYAELFQGMQEHNL" gene complement(709889..710062) /locus_tag="NT01SARS_0752" CDS complement(709889..710062) /locus_tag="NT01SARS_0752" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72254.1" /translation="MNCPACFWMNRVKGIKFPGMPGFLLNTATDTLLKKILMFTEIYK NHIRLWKEMVWVT" gene complement(710186..710650) /locus_tag="NT01SARS_0753" CDS complement(710186..710650) /locus_tag="NT01SARS_0753" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72255.1" /translation="MHLKLNGVDFNIPFDDKRKLYPKEALKKVVPEIQSYKKINASYN IDYLKKLTHLKLTNKKYQERSEECAFHNNFVFTTGKKKELMIAGLNVFYMVTPVVSKN TIPIKEHIYQLTMKNHDILSAAVHKKNITQIFESISLKVNGSYYDSLNEQVK" assembly_gap 710829..710848 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 710953..711327 /locus_tag="NT01SARS_0754" CDS 710953..711327 /locus_tag="NT01SARS_0754" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00717" /codon_start=1 /transl_table=11 /product="protein SamA" /protein_id="EJP72256.1" /translation="MPYFLESVHAGFPSPASDYIESPIDLNKHLIKNGAATFLVRAQG QSMVGSGITDQAVLIVDRSIKPSHNSIVVATIDGEFVCKRLKLKPRMCLMPDNPEYPP IFINHGQELEIVGTVTAAINKF" gene 711327..712589 /locus_tag="NT01SARS_0755" CDS 711327..712589 /locus_tag="NT01SARS_0755" /note="identified by match to protein family HMM PF00817" /codon_start=1 /transl_table=11 /product="protein ImpB" /protein_id="EJP72257.1" /translation="MAFALVDCESFYASCERIFRPDLKNIPIVVLSNNDGCVIARSTE AKKMGIGMGVPWFKVRESFLKENGQVFSSNFTFYGDMSARVMNILEGFVPRVEVYSID EAFLDFDTLKQNYNLYDFSCHIRTLVRQWTGIPVRIGIAPNKTLTKIAINEIKRKNIP TSVLHLSNKKEIRNALAHTSVSKVWGVGRRLTEHLNKAGINTALDLAEINPQGIRRKF SVVLERTVRELRGERCLDIDDDISSKKQIVVSRSFGQRISNLKELRPIVSNFAVRAAE KLRNEKQKCSQVSVFVRTSPFNKNKPQHSDLKTIELFTPTNDTRDILTAAKKGLLPIF RPGYDYAKAGIVLNKFTGEHIKQYSLFKDPNDPKQNTRLMKYLDQMNNYETQIYYASQ NTKKWSPMKQNMTSPKYTTNWYDLPMVN" gene 712632..712937 /locus_tag="NT01SARS_0757" CDS 712632..712937 /locus_tag="NT01SARS_0757" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72258.1" /translation="MYMPKWYKDSSDYTKINLQAWDVYFMLKDLKSRLEFSAVRLKHA IRFHNSRQEKAELRFQQRILNEHLKQINQMLEKNEILRKWSFEKEHGVSCFDLDSYD" gene complement(712934..713383) /locus_tag="NT01SARS_0756" CDS complement(712934..713383) /locus_tag="NT01SARS_0756" /codon_start=1 /transl_table=11 /product="opioid growth factor receptor" /protein_id="EJP72259.1" /translation="MNFENFLTNIEPDYKNRFLNDIWNFTDEDIEHTHDFIQLLFPLN EQSESVFHGYCLNTKSSIINIKSNDLAKSNIVTSSKWFLSFLERNTHWRRKHDHNYLR ITRIIKSLRLLVSDEEANKFYESFIELIDESLRSKINLTTLSYWENA" gene complement(713385..713759) /locus_tag="NT01SARS_0758" CDS complement(713385..713759) /locus_tag="NT01SARS_0758" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72260.1" /translation="MSDKQLNVFDEVIEVCCTNPITGFYRDGFCHTDEFDRGMHVVCA KVTNDFLNFSKSRGNDLSTPRPDLNFPGLKEGDSWCLCAERWKEAHDNNCAPPIFLKK TNKKTLKIIDLDILKDFALDLS" gene complement(713762..713884) /locus_tag="NT01SARS_0759" CDS complement(713762..713884) /locus_tag="NT01SARS_0759" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72261.1" /translation="MIVEESIEQCVVSGTMQGRAKVNLKVEGEVVAKMTCEFNN" assembly_gap 714000..714019 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 714077..714292 /locus_tag="NT01SARS_0760" CDS 714077..714292 /locus_tag="NT01SARS_0760" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="putative thiol-disulfide oxidoreductase DCC" /protein_id="EJP72262.1" /translation="MEDKYLKKLHVSFDNGTELSGVDAFIYVWKNTKGYNWLGKLISV PPIKQIAKICYAIIAQLLFWRFKLFVK" gene 714406..714846 /locus_tag="NT01SARS_0762" CDS 714406..714846 /locus_tag="NT01SARS_0762" /note="identified by match to protein family HMM PF00210" /codon_start=1 /transl_table=11 /product="ferritin and Dps" /protein_id="EJP72263.1" /translation="MEDMSIDSNEVCSILNEIMEYELAGVVRYTHSSMMVSGPYRLPI VTFLKEQAAESLLHAQLAGEKIAGLDGHPSQKIAKIEETNRHTIKDILEESLEHELYA LNLYKKLLVAVENKSVYLEEYARAQIGEEEQHSLELKIMLKDFG" gene complement(714843..715289) /locus_tag="NT01SARS_0761" CDS complement(714843..715289) /locus_tag="NT01SARS_0761" /note="identified by match to protein family HMM PF06945" /codon_start=1 /transl_table=11 /product="Fe-S protein" /protein_id="EJP72264.1" /translation="MPKLQKKRSSTPCLGICSTTFGDEVCKGCKRFAHEIVSWTKYSQ GEREIVNDRLEKFKIQILQHRFAITDKNLFESMLEEKAINFNHSLDPLTWIFDLFRAA GSQTFDISNFGIKSLVQFNPKTIRDEINNELLELSEAHHERYFKKN" gene 715395..717977 /gene="acnB" /locus_tag="NT01SARS_0764" CDS 715395..717977 /gene="acnB" /locus_tag="NT01SARS_0764" /EC_number="4.2.1.3" /note="identified by match to protein family HMM PF00330; match to protein family HMM PF06434; match to protein family HMM TIGR00117" /codon_start=1 /transl_table=11 /product="aconitate hydratase 2" /protein_id="EJP72265.1" /translation="MLDDYKKHVDERAELNIPPLPLDADQTSELISLLKEKNNDPDYL LNLLKERVPAGVDQAAYVKAAFLADITTGNASSPYISKIDAVEILGTMLGGYNVEPLI RCLEIEELAETASHVLGRTLLIFDAFNEIFELSKKNKYAKKVIEEWADAKWFTEKEDI KDQIKLTVFKVSGEINTDDLSPAPDAWSRPDIPLHALAMFKMPRTGLDDPLGTIEKLK EKGNPLVFVGDVVGTGSSRKSATNSVLWHMGDEIPYIPNKKEGGYCFGGKIAPIFFNT LEDSGAFPIEMDVSKMLMGQEIILEPLKGRVIDANTKETLSEFKLKTDVLLDEVRANG RIPLIIGRQLTDKSREALGLETSDVFRRPDTSDASKSGYTLAQKMVGKACGVEGIRPG TYCEPRMTTVGSQDTTGPMTRDELKELACLGFSADLVMQSFCHTAAYPKPVDIETQHN LPDFIMNRGGVSLRPGDGIIHSWMNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAF AATLGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPYAALQKGLLTIDKDGKKNVFS GRCLEIEGLPNMKVEQAFELSDASAERSASGCTVKLNEEPILEYLKSNIVMLRWMIAS GYGDAKTLERRAQSMEEWILNPQLLEADDNAEYAEIIEIDLNEIKEPLLACPNDPDDI KPLSEVANTKIQEVFIGSCMTNIGHFRAAGTLLQKYKNIKARLWVVPPTKMDEKQLIE EGIYNIFGVSGARTEVPGCSLCMGNQARVLANSTVVSTSTRNFPNRLGDGANVFLASA ELSAISAVLGKLPSVDEYHKYMGDINPLSDEIYRYLNFNEIDTYVESANNATIPAVNI VNPA" gene complement(717974..719464) /gene="purF" /locus_tag="NT01SARS_0763" CDS complement(717974..719464) /gene="purF" /locus_tag="NT01SARS_0763" /EC_number="2.4.2.14" /note="identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="EJP72266.1" /translation="MCGIVGISAETNVAAEIYDALLMLQHRGQDAAGIAVCSSEDQLN SRKSMGYVRDVFQQRHMEKLVGNYGIGHVRYPTAGGAGKEFAQPMYVNSPYGISLAHN GNLTNSKQLGNELFHAEMRHLQTDSDSEVLLNIFAHELGKQREIYPSAEHIFKAVAKT HIRCDGAYAVLALISGYGMLAFRDNNGIRPLSIGVRKGKTRNDYIISSEDALFTPLGY EKLRDVDPGEAVFIDKHGELFSQQCSDNPQKRPCIFEYVYFSRPDSKIDEISVYKARM RMGTKLAGQIKKTRPDHDIDVVIPIPDSSVTAAHQLAVDLQVPYREGFVKNRYIGRTF IMPYQEERRKSVRRKLNILDLEFDGKNVLLVDDSIVRGTTSKKIIEMAREAGANKVYF ASAAPAIKYQNLYGIDMPATAELIASNKNNEEVAKEINADWLIYQTLDDLIDSVREGN PEIKEFETSIFTGKYFTPLVENYLEELEISRKDELKMQREKTKAKG" gene complement(719464..720054) /gene="cvpA" /locus_tag="NT01SARS_0765" CDS complement(719464..720054) /gene="cvpA" /locus_tag="NT01SARS_0765" /note="identified by match to protein family HMM PF02674" /codon_start=1 /transl_table=11 /product="CvpA family protein" /protein_id="EJP72267.1" /translation="MEALGLNFADWFILVVLVASGLISFSRGFTKEFLSLFLWVAAFI AAISLEYLATPKINEYIGNPEISKILSYVVVFIVFIFIGGILIKFISKIIKWSGASGF DRFLGVLFGLIRGLIVLFVIFLLLPSSLKTTDLINNSKITPLIQKYAPQIEAYFRELV DNRNIVEEALEKIEPLQPKEELVPEPNTNNTKDGDS" gene complement(720036..720476) /locus_tag="NT01SARS_0766" CDS complement(720036..720476) /locus_tag="NT01SARS_0766" /codon_start=1 /transl_table=11 /product="putative preprotein translocase, SecY subunit" /protein_id="EJP72268.1" /translation="MTIERLVGLFFFIGSILILIITFYPETNTFIADDDLTVDKNSSS NININTNNDLPENFKNFSISDFDLFVYRAHVLSSKENSEAIVYKVNNGGLPAFFEVFE KNDKLFAVYVGPFVSESDIVNNMDTIKRLSESQNGEILRWKLSD" gene complement(720476..721321) /gene="accD" /locus_tag="NT01SARS_0767" CDS complement(720476..721321) /gene="accD" /locus_tag="NT01SARS_0767" /EC_number="6.4.1.2" /note="identified by match to protein family HMM TIGR00515" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, carboxyl transferase, beta subunit" /protein_id="EJP72269.1" /translation="MNWLRRLIPSIGTFKSKSKVPDGLWSSCKKCESVLYAPELEKSL FVCPKCDYHLRIGARQRLDMFLDNSNYSEIAPDLTTKDPLKFKDSKHYTSRIKEAVAS TGEKEALLVVSGELDQRKVIVAAFEFRFMGGSMGSVVGEKFVQGIKTAIKNKYPFICF ATSGGARMQESMISLMQMAKTSAAIQKLKKEKLPYISVLVDPIYGGVSASIAMLGDIN IAEPNALSGFTGRRVIEQTVRLELPDNFQKSEYLLSNGAIDMIVHRKNLRSKISGILK KIHKT" gene complement(721318..722103) /gene="trpA" /locus_tag="NT01SARS_0768" CDS complement(721318..722103) /gene="trpA" /locus_tag="NT01SARS_0768" /EC_number="4.2.1.20" /note="identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262" /codon_start=1 /transl_table=11 /product="tryptophan synthase, alpha subunit" /protein_id="EJP72270.1" /translation="MNRLTQKLDKLRKENKKALVAYLVAGDPDMDSTLEIMHLFVKSG VDIIEVGVPFTDPIAEGPIIQRAHDRAIRKKVSLEDIFTLIEKFRSKDDETPLVLMGY LNSFIFYKNLIIENKNNSVDSILVVDIPGELKIKDYGIENENINTISLISPTTKVERI ESIANNSSGFIYYVTLRGVTGSSNLNSEEIIKNIDTIKKYAKVPTLAGFGIKSEEDAK LLSKHSDGVIIGSSIVKMIEDNSKTKEFAKIGDYLVSMKKAIT" gene complement(722100..723305) /gene="trpB" /locus_tag="NT01SARS_0769" CDS complement(722100..723305) /gene="trpB" /locus_tag="NT01SARS_0769" /EC_number="4.2.1.20" /note="identified by match to protein family HMM PF00291; match to protein family HMM TIGR00263" /codon_start=1 /transl_table=11 /product="tryptophan synthase, beta subunit" /protein_id="EJP72271.1" /translation="MSSKTSNLPDQNGFYGKYGGKFVPETLMYALEQLEETYNNLKDN KDFRKQFYKDLSEFVGRPSPLYFAERLTQHYGTGSIWLKREDLNHTGAHKINNTIGQI LLAKHMGKKRIIAETGAGQHGVATATVAARLGLECHIYMGAEDVIRQSLNVYRIKLLG AQVHSVDSGSATLKDALNEALRDWVTNVDDTYYIIGSVTGPHPYPMIVRDFNSVVGEE LIEQSKELFNAMPDAIVACVGGGSNAMGAFYPFININQTRLIGVEAGGEGVETGEHAA PLNDGEPGVLHGALSYLMQDEKGQVKETKSVSAGLDYPGVGPEHSWLKDSGRAEYVAV SDQDALRAFHEVSEFEGIIPALETAHAFAYLDTLMKEFDSKANIIVNVSGRGDKDINT VAKIDGIKF" gene complement(723308..723916) /gene="trpF" /locus_tag="NT01SARS_0770" CDS complement(723308..723916) /gene="trpF" /locus_tag="NT01SARS_0770" /EC_number="5.3.1.24" /note="identified by match to protein family HMM PF00697" /codon_start=1 /transl_table=11 /product="N-(5'phosphoribosyl)anthranilate isomerase" /protein_id="EJP72272.1" /translation="MKPLIKICGIADLNFLNEVIQINEINYLGFIFYENSPRNVTKDL LNDIKRFDFKDKRPVCVFVNASSEFIKESISYFKDPLLQFHGDETNQFCSSFKKDFWK VIHVKSIESIDRIEEYPDASAILLENYKKDQFGGTGESFNWDIVKKANFSKKIVLSGG INVKNVDNAISTQPWCIDINSGVESSIGIKNITLVNKILEKF" gene complement(723916..724701) /gene="truA" /locus_tag="NT01SARS_0771" CDS complement(723916..724701) /gene="truA" /locus_tag="NT01SARS_0771" /EC_number="5.4.99.12" /note="identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase A" /protein_id="EJP72273.1" /translation="MRLAATLEYDGTEFSGFQRQNNAETIQEHLEVSLKKITNENITI NYSGRTDAGVHAISQVFDFKTNIERDEINWIKGINSNLPKSISVKEICSVQDDFNSRF SAIERTYSYVIYNSKEKPLFFNDFCCWVTNNLDIKKMNDQLAMFIGENDFSSFRSINC NSKNPVKTMQDVNLKQHNKFIILSFTANAFLQNMVRIMVGTLIDISKNENPLSVKEIL EKRDRSFAGRTAPAKGLFFLGPKYNENIDINTYEKDLLNRLKT" gene complement(724698..726029) /gene="fimV" /locus_tag="NT01SARS_0772" CDS complement(724698..726029) /gene="fimV" /locus_tag="NT01SARS_0772" /note="identified by match to protein family HMM TIGR03504; match to protein family HMM TIGR03505" /codon_start=1 /transl_table=11 /product="protein FimV, C-terminal domain protein" /protein_id="EJP72274.1" /translation="MLRYLLLLPLIFCINIFADVSLSSPKIKLNDKDQRIIEFKIENA SIKDGDIILNEYKTNNPIDESFIAYTLINDYGNYQTFTIVLDDEYLKDYFSFKILIKE NFAKDIFIYLPSKVRNTFNNSKPNKPERISSETAFSLAKSRSEASNKLEQAEKVEPEI QEIEIIKGSEITTVWSMAEKIKGQNQDISIYQIMWSIYLGNSKAFIDDNINLIRKDID ISIPTQSEMRQVSLEFAKESFIEMNESFSKRFSSASKSLLVLTAPKNAEIEQKETTDI EKNDERSISTDENFTPEDFIENNTKELGVNISAESAEEFLEKVEDSKEETSNTNFQLM DIIFISLISLISGILLALIYINFRKIKDSKTSIDYDFDEPKEDNSKNIMPVDLSIEND ESQQQLDLAVMYIEMDDFENAKLILKDLIKKTSDESLLNDANILLDKIQKA" gene complement(726023..727039) /gene="asd" /locus_tag="NT01SARS_0773" CDS complement(726023..727039) /gene="asd" /locus_tag="NT01SARS_0773" /EC_number="1.2.1.11" /note="identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296" /codon_start=1 /transl_table=11 /product="aspartate-semialdehyde dehydrogenase" /protein_id="EJP72275.1" /translation="MNSQINLALIGASGVVGEKIMTLLENRATKINNFYPLGDSSVGK ELVFNDSAYVIQDLKDFDHSKINIAIFSAGSKVAKEHARNFVDNGIYVIDLSSEFRYE DDVPLIIPEINGEEINKLRGPSLIANPNCSTSQLLMALNPIHKELKVDILNVSTYQAV SGTGKQAVQELKNQIKDSSINQDVYPKKIAFNVIPQCDIFLENNFTKEEMKLVWETQK ILDKNIEVQATCVRVPVINGHSEAVFLRTIKETTREKVIELLNNSSGIKVIDNPESLK YPTPLENANDTEDVFVGRIRSQIINSENWTSMWIVADNVYGKGAALNTVQILEGLVEN NKLC" gene complement(727032..728108) /gene="leuB" /locus_tag="NT01SARS_0774" CDS complement(727032..728108) /gene="leuB" /locus_tag="NT01SARS_0774" /EC_number="1.1.1.85" /note="identified by match to protein family HMM PF00180; match to protein family HMM TIGR00169" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="EJP72276.1" /translation="MSKKILILPGDGIGQEVTSSAIQILEFIVDKFNLDFSTKILDVG GTAYEKFGSPIPEDVLVSAKEADAILFGAVGAPQWDNLSWEDRPENALLTLRKELNLF ANLRPAFLFEELSNASPLKEKIIQGLDILIVRELTGGIYFGEPRGVVKDKNPNYAFNT MVYNEDEIRRIAKIAFESAQKRKGRLCSVEKANVLEVSKFWRSIVTEMSEDYPDVELS HQLADNAAMQLVLDPNQFDVIVASNLFGDILSDIAATLTGSIGMLPSASLDSSFKGMY EPCHGSAPDIAQQDIANPLAMIGSLSMALKYSLGEEMVASKIDLAIKNLIKQGFRTKD ISNGENYLKTSEVAQKIIENIENE" gene complement(728105..728746) /gene="leuD" /locus_tag="NT01SARS_0775" CDS complement(728105..728746) /gene="leuD" /locus_tag="NT01SARS_0775" /EC_number="4.2.1.33" /note="identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase, small subunit" /protein_id="EJP72277.1" /translation="MKSNSEGLIIDGVVAHIDRDNIDTDQIIPTEYLKSIKKFGFEDY LFDGWRYKDDGKLGVTKEERIIDKSFILNKEPYNESKILLSRDNFGCGSSREHAVWAL RDFGIKAVIASSFGDIFYNNSFKNGLLPIILDKNEIEFLFSETKQNVLELSIDLEKKE IIYNQKCITFEVEKHLIDRIIFGLDDIDITFKDKDKIIDFEKNRISTRPWIFK" gene complement(728743..730140) /gene="leuC" /locus_tag="NT01SARS_0776" CDS complement(728743..730140) /gene="leuC" /locus_tag="NT01SARS_0776" /EC_number="4.2.1.33" /note="identified by match to protein family HMM PF00330; match to protein family HMM TIGR00170" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase, large subunit" /protein_id="EJP72278.1" /translation="MKTLYDKLWEEHHVTQLDSGESLLYIDRHYLHEVTSPQAFEGLS KKNLKPWRLDANIATPDHNVPTTRGNNFTSDLINDEISKIQVVELDKNCNKFGIKQFD IQSNKQGIVHVIGPELGYTLPGMTIVCGDSHTSTHGALGCLAMGIGTSEVEHVLATQC LKVSKLKNMNVRFEGVPQVNVSSKDIVLYLIGKIGTAGGTGYAIEFSGSYIDKLSVEG RMTICNMAIEAGAKVGLIAPDETTIDYVKKNSFLDDELFNQAKQCWKSLRTDDKAVFD NEIEIDVSKIKPQVTWGTSPEMVVNFDDPIPTIIDSNEESKKNVELARSYMGIQNESK LSDLVFDKVFIGSCTNSRIEDLRQAAEIVKGKTIAENISEAIVVPGSGLVKEQAENEG LDKVFTDAGFIWRDPGCSMCLGMNPDQLKPHERCASTSNRNFEGRQGYLGRTHLMSPI MAAFTAINGTVGDPS" gene complement(730146..731228) /gene="aroC" /locus_tag="NT01SARS_0777" CDS complement(730146..731228) /gene="aroC" /locus_tag="NT01SARS_0777" /EC_number="4.2.3.5" /note="identified by match to protein family HMM PF01264; match to protein family HMM TIGR00033" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="EJP72279.1" /translation="MSGNAFGKIFKIMTFGESHGTAMGCILDGCPPEIEISEEDIQLE LDRRKPGQSDVTTQRQEDDAVQILSGVFEGKTLGTPIGMIIYNKDQQSKDYSNIKDVF RPNHADITYQAKYGHRDYRGGGRASARETANWVAAGAIAKKILKKEGVEVNGFVSAIG KVRAESINYKDIDNKYFFCDESKLTDLDSMFDNLIKEGNSVGAKLGVIVKNCPVGLGD PVFEKLDANLAKAIMTINAVKSVSVGNVDDLLNLKGSEARDEITTSGFSSNNSGGILG GISNGDDISLSFIIKPTSSIKTKGKTIDKDGKEVDIEVTGRHDPCVGIRAVPIAEAMV SLVLVDHFLINKAQCADVKQNLPFSE" gene complement(731268..732719) /gene="prpD" /locus_tag="NT01SARS_0778" CDS complement(731268..732719) /gene="prpD" /locus_tag="NT01SARS_0778" /EC_number="4.2.1.79" /note="identified by match to protein family HMM PF03972; match to protein family HMM TIGR02330" /codon_start=1 /transl_table=11 /product="2-methylcitrate dehydratase" /protein_id="EJP72280.1" /translation="MSSNVDLNIRPGFDGLVSEIANYVSSYKIESDLALDTARNCLID TIGCGLLALQFPACTKMLGPIVKDTKVPFGVRVPGTNYELDPVKGAFDIGCTIRWLDY NDTWLAAEWGHPSDNLGAILSVCDYVSQRNIADGKESLTMRTVLESMIMAHEIQGVLA LENSFNKVGLDHVILVKVASTAVATKLLGGSLDQIKDAVSQAWLDGQSLRTYRHAPNA GSRKSWAAGDATSRAVRLAMITMSGEMGYPGVLSAPVWGFEDVSFNGEKLSLPQPFET YVMENILFKISFPAEFHAQTAVEAAVKLHKSIKDKIDDIKSIEITTHESAIRIISKVG ELNNPADRDHCLQYMVAIGLLKGNLVAEDYEDDVAKDPRIDALREKMVINEDKRYSKE YLEADKRSIANRIQIHFNDGTSSNEVEVEYPIGHKRRREEGIPVLEKKFKDNLDITFD DEASSNIYELCMNQKNLEETSVIDFQNLFSKIP" gene complement(732723..733844) /locus_tag="NT01SARS_0779" CDS complement(732723..733844) /locus_tag="NT01SARS_0779" /note="identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800" /codon_start=1 /transl_table=11 /product="2-methylcitrate synthase" /protein_id="EJP72281.1" /translation="MTKKLEGAGLRGQVAGETSLSTVGQVEGLAYRGHKIELLAEKSC FEEVAYLLLYDKLPNQKELDDYKQLLKNQRDLPDSLKLVLQKIPSSAHPMDVMRTGTS MLGNLEPEGEFSNQLNSINRMIATMPSIVTYWYKYSHEGLDIDLVNDEDSMAGHFLHI LHGEKPSDLHRKVMDVSLILYAEHEFNASTFTARVCASTMSDIHSCVVAAIGSLRGPL HGGANEKAMELIENWTSKEEAKTKIIEMLGNKEKIMGFGHAVYSIRDPRNAVIKEYAK ELSQLAENDTLYQVAEEVEKVMADEKKMFANADFFHAPAYFYMGIPTKLFTPIFVMSR VSGWTAHCMEQRANNRIIRPSAEYIGVESSDWVDISDRS" gene complement(733841..734725) /gene="prpB" /locus_tag="NT01SARS_0780" CDS complement(733841..734725) /gene="prpB" /locus_tag="NT01SARS_0780" /EC_number="4.1.3.30" /note="identified by match to protein family HMM TIGR02317" /codon_start=1 /transl_table=11 /product="methylisocitrate lyase" /protein_id="EJP72282.1" /translation="MKPGQKFRNALKNNKPLIIPGTINAYSAKLAELANHNSIYLSGS GVAAASYGLPDLGVTTLENVLIDAKRITSATSLPLLVDIDTGWGDFDAISNTIIEMGN ANVAAVHIEDQIFDKRCGHRPNKQLVSIDEMQDRLKAALDAKIDDSFFIMARTDALAS EGIEKAIERCGKYLDVGADGIFFEAAVSIEEYKEFKNNFSAPLLANITEFGKTPLFTQ KELSDVGVDMVLYPLTAFRAMSLSAEKIYNSIIKDGTQEPLLDIMQTREELYEVLDYY NFEKQLDEQFENNNKESS" gene complement(734727..735386) /locus_tag="NT01SARS_0781" CDS complement(734727..735386) /locus_tag="NT01SARS_0781" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72283.1" /translation="MTDKLKLNNYKRPKLNLPNGEKRLLLHSCCAPCSGEIIEAIAAS DIETTVYFYNPNIHPIDEYEIRKDENRKFCEKVGFKCIDGDYDKDNWFERVKGLENEP ERGERCTKCFDMRFERSALFAYENGFNIYATTLGISRWKDMDQINSSGHRSASRYKNM TYWDFNWRKNGGSSRMLEISKREHFYQQEYCGCVYSLRDTNRWRRKNNRDRIIRGIKY Y" gene complement(735383..735994) /gene="thrH" /locus_tag="NT01SARS_0782" CDS complement(735383..735994) /gene="thrH" /locus_tag="NT01SARS_0782" /EC_number="3.1.3.3" /note="identified by match to protein family HMM PF00702; match to protein family HMM TIGR02137" /codon_start=1 /transl_table=11 /product="phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein" /protein_id="EJP72284.1" /translation="MEIVCLDMEGTLTPEVWERVAANTGIKELGKTTRDIPDYGELME MRIKIMSENGIKLSNVQDAAASLELLPGALSFVNKLREKFQVVILSDTFHDVAKPLMK KLGYPFLLCHNLKVIDDEIVSYEFRHPQAKKQAIESFKSLGYRCFAAGDSHNDIQMFE VADKGFFINAPLKISSKHPEIESYDNYNDLEKAIYSNSIFVQT" gene complement(735997..736899) /locus_tag="NT01SARS_0783" CDS complement(735997..736899) /locus_tag="NT01SARS_0783" /note="identified by match to protein family HMM PF06189" /codon_start=1 /transl_table=11 /product="cytosolic 5'-nucleotidase 1A" /protein_id="EJP72285.1" /translation="MKLKKSKLIIGISSRALFDLDESHEIYKKEGLKSYEDYQIENED KTLEPGEAFGLVKKILKINDLYEKENRIEVILLSRNTSDTGLRIRNSIESHGLNISRA AFCGGESPHRYVKDFGVHLFLSSNIEDVKLAIESNVAAATIMSRSDSSRRESSSDLLK IAFDGDAVIFSDESERVFQKDGLKAFIDNEVNSKSILKEGPFKSFLVELNKIQNEFQI NECPIRTALITARSAPSDKRVIKTLRDWGVRIDESLFLGGMSKNKFLESFDADIFFDD QKKHIIDANERTTSGHVPYGIKNN" gene 736963..737583 /gene="lexA" /locus_tag="NT01SARS_0785" CDS 736963..737583 /gene="lexA" /locus_tag="NT01SARS_0785" /EC_number="3.4.21.88" /note="identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498" /codon_start=1 /transl_table=11 /product="repressor LexA" /protein_id="EJP72286.1" /translation="MKEITSQQQRVLDCIQIYLNKTGFPPTRADICRELGFKSPNSAE THLRALEKKGFISIESGASRGISIIGNSDLSSNMDNNYPVIGLVAAGSPTLAEENIEN KISCPDDFFSSSFDYFLKVKGLSMKDAGIMEDDLVAVKKTHDVKNGDIVIARIDDEVT IKFLNRKSPKIVELEPANDDFQNIIVDLEHEDFTIEGKSVGLLRRN" gene complement(737580..737837) /locus_tag="NT01SARS_0784" CDS complement(737580..737837) /locus_tag="NT01SARS_0784" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72287.1" /translation="MANYLELAQLPDGTIVLRRSDDHKNPIVKIEFSRESKDFLQGQE LAVAKEMIRAGIESVSGSVSDLDEFFEKQIESFSKKQNIIH" gene complement(737861..738298) /locus_tag="NT01SARS_0786" CDS complement(737861..738298) /locus_tag="NT01SARS_0786" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72288.1" /translation="MNEKELSNLYQDLSQDILKKLTFDQTVEDNQNQLLFLTCCEKSL TYFADEVSSYFKNDLKDFNKLNFFYKWRELSEISTISNIIVNEIGQNGFINQINLFKS NILQKDNDNLIVSTQSNDLKKFNLLLDKYETFKDLLRKMLDEC" gene complement(738301..740916) /gene="topA" /locus_tag="NT01SARS_0787" CDS complement(738301..740916) /gene="topA" /locus_tag="NT01SARS_0787" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM PF08272; match to protein family HMM TIGR01051" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I" /protein_id="EJP72289.1" /translation="MSKSLVIVESPAKAKTISKYLGPNYIVESSVGHIRDLPKKASSD VKRFTTPKNISPEEKARLKSINERKRLIRRMGIDPDNGWEAVWQIIPEKEKVIKNLKK IAKNCEHIYLATDLDREGEAIAWHLKEALGSEKYNYSRVRFNQITKDAINESFLDPKE IDLDLVKAYRARRFLDKVIGFELSPLLWKKIARGLSAGRVQSVALRLLDERERSIQEF IPEEFWEIDLDVVSKQNEKLKFILNRRKNDPLLKQEDVKLIRDKINDNQLSINEIIKK PVKVKPKPPFITSTLQQSASTRLGFNVKRTMRVAQKLYEAGYITYMRTDAPSLSKDSI NDARNFINENLGENYLTNAPRIYSSTENAQEAHEAVRPTNTFLRSSDLINLSEEEVKL YKLIWERFVASQMPDAEYLSTSAKTFVDEHIFVAKGRELVFDGFTKVLKTSSKEEDIL PSLNEGDSLTVENINLEQKYTKPPSRFSEAALVRELEKKGIGRPSTYANIISTIQDRG YVEIQNKRFFVKKIGHIVAERLLESFDDIMDYDFTANLENSLDKVANGNADWRNVLDN FYESFQKDLHIASDESTGMRPGNIPIETNISCPCGKAFMVIRNSSNGVFLGCSGYQNI GDEKCKETINLISGDEAISIDDTEEAENLLIKKRCPKCGTSMDNYLMDESRKLHVCGK NPDCDGYLVEEGQFRIRGYDGPTLECHKCGSDMQLKTGRFGKYFQCQNDNCKATRALQ RNGEPKPLTMEPIELPNLKCLKCEDHYLLRDSMKGLFLAASQYPKNRETRAPKVSEIK DLSNEIVQACRFLPDKNKHEYLLSAPVYDSEGNPYVIRYNRNEDVHYVASEKDGKKTK WTAAYTNGEWLETKK" assembly_gap 741031..741050 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(741059..741496) /locus_tag="NT01SARS_0788" CDS complement(741059..741496) /locus_tag="NT01SARS_0788" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72290.1" /translation="MNEKELSNLYQDLSHDILKKLKFDQSVEDNQNQLLFLTCCEKSL TYFADEVSSYFKNDLKDFNTLNFFYKWRELSEISTISNIIVNEIGQNGFINQINLFKS NILQKDNDNLIVSTQSNDLKKFNLLLDKYETFKDLLRKMLDEC" gene complement(741499..744114) /gene="topA" /locus_tag="NT01SARS_0789" CDS complement(741499..744114) /gene="topA" /locus_tag="NT01SARS_0789" /EC_number="5.99.1.2" /note="identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM PF08272; match to protein family HMM TIGR01051" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I" /protein_id="EJP72291.1" /translation="MSKSLVIVESPAKAKTISKYLGSEYIVESSVGHIRDLPKKAISD GKRSTIPKNISPEEKERLKAINDRKRLIRRMGINPDNGWEADWQIIPEKEKVLKALKK AAKNCEHIYLATDLDREGEAIAWHLKEALGSDKYNYSRVRFNQITKDAIIESFSEPKD IDLDLVKAYRARRFLDKVIGFELSPLLWKKIARGLSAGRVQSVALRLLDERERSIQEF IPEEFWEVNIDVLSKENEKVKFELNRKKSDPLLKKDDAELIKNQLNTHELKINEISKK PVKVKPKPPFITSTLQQSASTRLGFNVKRTMRVAQKLYEAGYITYMRTDAPSLSKDSI NDARNYISEQLGENYLTNAPRIYSGNENAQEAHEAVRPTNTFLKSSDLLNLSEEEVKL YKLIWDRFVASQMPDAEYLSTSAKINVNENIFVARGRELVFDGFTKVQKTSTKDEEML PTLNEGEILILEKINQEQKFTKPPARFSEAALVRELEKKGIGRPSTYANIISTIQDRG YVEIQNKRFFVKKIGHIVAERLIESFNDIMDYDFTANLENNLDKVANGEAEWRNVLDG FYKSFQEDLLSALDEHNGMRGNSPTLTNMLCPDCNSNNLVIRNSSNGVFLGCSGYSNA GDQKCKNTLNLVSGDEAISVDDNEEVENLLIKRRCPICSTSMDNYLIDENKKIHVCGK NPDCSGYEIEEGNFKIRGYDGPTLECHKCGSEMQLKTGRFGKYFACQNDNCGTTRALQ RNGEPKPITMEPIELQELKCLKCEDHYLLRDSMKGLFLAASQYPKNRETRAPKVSEIK DLANEIREACRYLPDKNKHEYLLTAPEHDSDGNPYVIRYNRNEDVHYVASEKDGKKTK WTAAYTNGEWLETKK" gene complement(744174..744611) /locus_tag="NT01SARS_0790" CDS complement(744174..744611) /locus_tag="NT01SARS_0790" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72292.1" /translation="MTEILVFIFAALLLIGSISIAMPSKASREISKLRMSAKLLGCNI TSTLYSKNSFKNDQSISVSYQIKNISNIKEGHFIRDKNEFILYSPVKLKYENGFESMI NAINDISPNLMEIIFTNSSVTFLWQEKEGISVLENIIKKINYL" gene complement(744611..744733) /locus_tag="NT01SARS_0791" CDS complement(744611..744733) /locus_tag="NT01SARS_0791" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72293.1" /translation="MLHRLLRENIEISIMNVIILDNISMSLVREKFKSFLKLKQ" gene complement(744754..745743) /gene="pyrD" /locus_tag="NT01SARS_0792" CDS complement(744754..745743) /gene="pyrD" /locus_tag="NT01SARS_0792" /EC_number="1.3.98.1" /note="identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036" /codon_start=1 /transl_table=11 /product="dihydroorotate oxidase" /protein_id="EJP72294.1" /translation="MNLFLKILRLLPPEIAHKIALDLLSLSYKFGILSFIFRKPNDEN CSFAGMDLSNRLGTAAGLDKNGDYIDCLGALGFGFLEVGTVTPMPQYGNPKPRVFRNF DENSIINRLGFNNRGVDRLVKNLKSRSFDGIVGVNVGANKNSNDEERINDYLHCIEKV HKYADYITVNVSSPNTPNLRNLQNDANLLNLVSKVDKLVNKLQIKIPLFLKISPDENN ITIENIIEIVKNSIFSGIVATNTTIDKTSLSNIKYKNIEGGLSGEPLMKKSTEMIELI NTKANKTIPIIGVGGVMNREDYLEKITSGAGLVQIYTGFVLKGPNIVSQILPD" gene complement(745740..746600) /gene="galU" /locus_tag="NT01SARS_0793" CDS complement(745740..746600) /gene="galU" /locus_tag="NT01SARS_0793" /EC_number="2.7.7.9" /note="identified by match to protein family HMM PF00483" /codon_start=1 /transl_table=11 /product="UTP--glucose-1-phosphate uridylyltransferase 1" /protein_id="EJP72295.1" /translation="MIKKAVLPVAGFGTRFLPASKATPKEMLPIIDKPLVQYAVEEAI DIGIEEIIFITSDDKFSIKKHFERNEKLEQRLVENDKEDFVDKLNPKIFEGITFHYVN QEEQNGLGDAVLKAESLINGDAFALLLPDDLFFSKNSCLSQLSSIFLSTNASTIAVNK IDKENIHKYGVIKPGKEKNEAILIDDIIEKPSIEDAPSDIAVCGRYILTATIFEHLKK IESDKSGEIQLTDAIKSLLSEEKVYAKIYDGEKFDCGSKMGFVHATIALALRDKSISQ DIHKIIKEII" gene complement(746602..747087) /locus_tag="NT01SARS_0794" CDS complement(746602..747087) /locus_tag="NT01SARS_0794" /note="identified by match to protein family HMM PF01694" /codon_start=1 /transl_table=11 /product="rhomboid protease GlpG" /protein_id="EJP72296.1" /translation="MFSFEQTFYENSQWWRLITPMFIHFSFAHLAFNCLWIYILGEKI EKFDGSFVFFCLVIFSAIFSNSLQFFWSNTSLFGGLSGVIYALIGFCMVNEMDSPYGR YDIPPGLYLFMIIWLVLGFLGIVEMFGFGAVANFAHLGGLISGIIFAVVYKFFPLYRS N" gene 747140..747253 /locus_tag="NT01SARS_0796" CDS 747140..747253 /locus_tag="NT01SARS_0796" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72297.1" /translation="MTNINEPKFEMSAMQTEINIIGICKLLILINLFFRNI" gene complement(747233..748096) /locus_tag="NT01SARS_0795" CDS complement(747233..748096) /locus_tag="NT01SARS_0795" /note="identified by match to protein family HMM PF01513" /codon_start=1 /transl_table=11 /product="putative inorganic polyphosphate/ATP-NAD kinase" /protein_id="EJP72298.1" /translation="MFKNVGIYVRQKSNHGVDLSAMDSMISFLANQNINLKTDKSSDY QNDLIESINHEDLIKIVDLIIVFGGDGTLLNASRKYLDSEIPILGINMGNLGFLTDIK VENFEKSLSSIMNGNYVIEERNLVSAEFNNNHVYGLNEVVIHSGSYAQLMRYRLTVNE KIVYEQRSDGLIIATPTGSTAYALSAGGPIIHPSLDVWTILPMLPQSLSSRPFIISSD EKVEVKLFEGPEEKAKICVDGQSDIDLPFNTEIVISKMNKTLKLVHPKDNDFFEACRE KLGWSLDISKK" gene 748225..749418 /locus_tag="NT01SARS_0797" CDS 748225..749418 /locus_tag="NT01SARS_0797" /note="identified by match to protein family HMM PF00441; match to protein family HMM PF02770" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="EJP72299.1" /translation="MTDLNKFREDTKKWLDKNCPPSMRNGADPKIPVDEVWGGRNAVY KNPESKIWLERMGEKGWTMPTVPKEYGGGGLTKDEVKILNEEMFFIGAKQPLLSFGIW MLAPVLLEYGTEEQKKLHIPKIIKGEIRWCQGYSEPGSGSDLASLSTKAEDIGESFLV NGQKVWTSYADKADWIFALVRTGPKEPKHDGISFLLIDMASKGVSTKPITLISGKSPF CETFFDNVEVPKENLIGELNAGWTIAKKLLQHERAFISNFGLAAGMGSKRDVVSIAKK HLGEEDGKIKNTFYRSEISSHKIKEHAFGLTLKRAGDEGGKASATASMFKLYGTEHNK KRHELMVAASGVNGVAWDGDEFEDSDKNLTRAWLRTKGNSIEGGTSEVQLNVISKRVL GLPSQ" gene 749424..750563 /locus_tag="NT01SARS_0798" CDS 749424..750563 /locus_tag="NT01SARS_0798" /note="identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="EJP72300.1" /translation="MKLILTEEEQFLKDTATNFANERSPINHFRSLRDSNDPILWDKN LWNEMSKLGWPGIMIPEEFGGSNFGLSGICVVLQECAKTLTPSPLFATGVLGAYSINT YGTQEQKEMYLPAIVNGKLTTSLAVDEASHHNPFQTEFIAKKQKDNYILSGKKTFVID GASSDLIIVLARTSGSRGDSTGLTLFVVNADQDGINKIKLDMADSRNYANITFDNVTV SSDAILGDLETAGETIDDILDIGRIAISAEMLGNAEAAFDTTLDYLKQRKQFGVLIGS FQALQHRAAEMFCEIELTKSSVMAAMRAADERSNDLQRLSSLAKTVSGETLHLVSNEA IQMHGGIGVTDEYDIGFFLKRARVAEQIFGSSKFHTERYANLSGF" gene 750583..751467 /locus_tag="NT01SARS_0800" CDS 750583..751467 /locus_tag="NT01SARS_0800" /note="identified by match to protein family HMM PF01553" /codon_start=1 /transl_table=11 /product="phospholipid/glycerol acyltransferase" /protein_id="EJP72301.1" /translation="MESVKLTVIGILTFFLILIELIIGFGTLTLINIPRIIIPFKFFK IFLAKVSNQIGDITVYGLKLIMLLMHGNTIQVINEQKFDSNTWYMAMSNHQSWADIFV LLVTANHRIPLLKFFMKKELWWIPFVFLANQTLNMPFVNRHSKEAIKKNPSLRHKDYK NTLKSCKRFLRTPSTIFSYAEGTRFTDEKHALQGKKYKNLLSPKVGGMATALSAMPNI DTLIDFSLVYKSNKRGAWSFLTGEMKDVKVFIKSYAVPTHLKHRNYSEDEKYRDEFKT WIEEIWIEKDQKISELKF" gene complement(751456..751944) /locus_tag="NT01SARS_0799" CDS complement(751456..751944) /locus_tag="NT01SARS_0799" /note="identified by match to protein family HMM PF03737; match to protein family HMM TIGR01935" /codon_start=1 /transl_table=11 /product="regulator of ribonuclease activity A protein 1" /protein_id="EJP72302.1" /translation="MNKFTVPDICDEHGENIKICDLFLNSYGKNDKFFGQVETARCEH SNSIVKELVAQNGSNKVLVIQHTGTEKCSMVGDQIAQMAYDNQWKGIITNGYIRDIEV IKDIPIGVYAKNSYPKKTDKSVGKGEIGLTLEFQNFIVQKDSWAYVDTNGIIFSEKEL EF" gene 752010..753167 /locus_tag="NT01SARS_0801" CDS 752010..753167 /locus_tag="NT01SARS_0801" /note="identified by match to protein family HMM PF03060" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase, NPD" /protein_id="EJP72303.1" /translation="MKSQICDLLKIEFPLVAFSHCRDVVAAVSKAGGMGVLGAVGLTP EKLEIELNWIDEHVDGKPYGVDVLVPNSYVGKGENLTTDDLRAMIPQEHRDFRSDILE QYDLQASDLRSSENSKELESNSNGVLGAGLDGAKEVLEVAFAHPISLVANALGVPPKW MLEMGKEHNVPVAALVGAKQHAVKQAEAGVDIIVVSGTEGGGHCGSVSTMVLVPEVRR ALKDYGDVPILAAGGICTGEQMAGVMAMGADGVWCASVFLPTTEAETSDNVKEKMIAA SSSHTVRSKSRTGKHSRQLSSPWVEAWEGKDAPEPLPMPLQTMVSEPALKKVADQAAI GHEGAKQLETYWVGQGIGLVNETITAGQTVQKFKEEFIDSYERVNGFFSDD" gene 753181..755121 /locus_tag="NT01SARS_0802" CDS 753181..755121 /locus_tag="NT01SARS_0802" /note="identified by match to protein family HMM PF00933; match to protein family HMM PF01915" /codon_start=1 /transl_table=11 /product="periplasmic beta-glucosidase/beta-xylosidase" /protein_id="EJP72304.1" /translation="MIKASSLIKRIFLVLIALLSLLSLFLLFDLYQPISKVKVKRALG VETSIIYDDNFSFRDLNKNGYLDIYEDYRIASNIRADDLLSKMTLEEKVGQMFHPPFT LNPDIFMLLYEIAIRGNKSTEAKIVFDHITHFNLYGNPTPKNLAKQINYFQKIASKTR LGIPISISSDPIHEVPKGGGIASFSVDGFSKWPSQLGFAATNDPKVIYEFAQIARKEY LAVGIRTALHPMSDLATEPRWARNFGTFGSNADLASKMTLAYMDGFQGKKITNKSVHT MVKHFPGGGPQEDGLDPHLYSGRNQTYPGNNFNYHLVPFKKAIDNNLKVIMPYYGIPM GISDDEVAIGFNSYILTDLLRDELGFDGVICSDWGIISGRHWGVENLSIKERYKKSFL AGIDQYGGEDDPEHIIKLVNDGEISVTDINNSVKRILINKFDLGLFEDPYVNVNNVEK IVATDEHNQAGLDAQRKSIVLLENDGLLPLKSESKVFIDGLDIKIGSKFGNVTKSHKD ADVVIMYVHTVFNGNQESGINRLFDNFLSTLFPNGNLNFNDEIKNKIKKYSENKKLIL VVDLNRPAILSEIKSNASALIGTFGVLDQVIYEAIYGDFNPNGKLPFEIPSSMEEVIN QKEDLPDDTENPTYVFGYGLSY" gene complement(755123..756370) /locus_tag="NT01SARS_0803" CDS complement(755123..756370) /locus_tag="NT01SARS_0803" /note="identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401" /codon_start=1 /transl_table=11 /product="peptide methionine sulfoxide reductase MsrA/msrB" /protein_id="EJP72305.1" /translation="MNKHKYFIALFFFFTGFTLSNQTNHIQTIYLGSGCFWGAEKGYE ALDGVINAKSGYANGYGVSPNYRSIIQLKNKFNKNNFAEVVEVTFNNNFITVEEILMH FFESHDPTQYNRQGNDIGTQYRSTILYSDDDQKEIAEMLKKKYQNLLSDYGYGSIKTI IEPLDNFYLAEEYHQDYLKKNPNGYCPDLSTGIVFNKEEIKPLDNTELTKGKHILVID SRNYCPYCEKLKSDVTNDYKGSIPMTYRTSDQLHGLRLESPSWATPSILFLEDGKEVF GYQGYIEPKDFYKLLGKFKLGNTEAYDVAFNDGTDARFCKEYQIFKNTPEGVFVDKLS GAPLFDTKDRFVSRSGWLSFTRPVEGSVYELPDNSYGMRRTEIRSVSSDIHLGHVFDD GPNGMPRYCINATVLEFQPRERS" gene complement(756363..756983) /locus_tag="NT01SARS_0804" CDS complement(756363..756983) /locus_tag="NT01SARS_0804" /note="identified by match to protein family HMM PF02798" /codon_start=1 /transl_table=11 /product="putative toxin-antitoxin system, toxin component" /protein_id="EJP72306.1" /translation="MIKIYGTENSRAVRPIWTAEEMGLEYELVMMPFPPRVFMKEYLD INILGTVPYMIDGKIEMTESVAISQYLVERYGPSDLQVKPSEEDYPLYLNWLFHADAT LTFPQTVVLRYKLQEPGVADAAVEGYSRWFVSRLKLLEKSLEGKEYLCSNRFTIADIC VSYAINLAEALGIEQAFKPNITRWSKNLFSRPAFIKSKQYKYEQNE" gene 757068..758735 /locus_tag="NT01SARS_0805" CDS 757068..758735 /locus_tag="NT01SARS_0805" /note="identified by match to protein family HMM PF01039" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase beta chain" /protein_id="EJP72307.1" /translation="MSLMKKENIAPKLKSTLDTKSEQFIKNKEMMLDKLKFLDGLLDL AEIGGGLHHHERLAKRGKMPVRERVMNVLDPDTPFLEIQPYAAYGTNNYNVGGGCVSG IGIISGVECVIFANDPSVKAGAMTVYVGEKWARAIEISRDNKIPFISFVESAGGDLNV SRGDGDNPPIAPTLQQSHFASTGRFFYEMTELSKLRIPVISVVFGSSTAGGAYQPGMS DYNIFIKDQSKAFLAGPPLVKMATGEESDDETLGGAKMHSEISGLSDYLAEDEMDALR ICREVVSHLNWTKKGNEPDIKSSEPEYDEEELLGILSEDLKSAVDIKEIIARFVDGSK FEEFKPLYGSTLVCGWATVHGYQVGILGNNGPIYPQSAEKGASFIQLCNKRNIPLIFL HNVTGFLVGKDFERQGIIKKGSQLINAVSNSTVPHITFIVGASYGAGTYAMSGKAYNN RFTFLWPTAKIAVMGPEQMAGVMSIVRRAKAMRDGKKFDEKADQQLKEMVIDYLEKLS HGLVASSMLTDDGIIDPRDTRDVIGFCLSIVNNNHIEGAKEYGVFRL" gene 758732..760654 /locus_tag="NT01SARS_0806" CDS 758732..760654 /locus_tag="NT01SARS_0806" /EC_number="6.3.4.14" /note="identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase subunit alpha" /protein_id="EJP72308.1" /translation="MIFNSILIANRGEIACRVIKTAKEMGIRSVAVYVDADKDAPFVK DADESVKLKDGGYLDADQIIEAALKTDAQAIHPGYGFLSENASFARKVKKSGLIWVGP SPHVISVMGDKLKAKELAIKADVPTLPMTSNPKQASKIGYPLLIKAAAGGGGKGMRIV NKSKELKDSIISAQREALNGFNDDRIFIERYVEKSRHIEIQIIGDSHGNVVHLGEREC SIQRRHQKIIEESPSPRVTDEIRNKMGDAAVKLAKQIKYESAGTVEFLFDDKTGEFWF LEVNTRLQVEHPVTEEVTGIDLVSEQLKIARGEPLQFKQTDINWKGSSIEARLYAEDP NNDFLPEIGTLIAFDKDESVEARWDSGVTKGTIVGTDFDPMLAKIISYAPNRTDAAGK LAKALESAHIGGVKTNRDFLINCLKSSEFIDGNTTTDFIDRVNPARKLTLDQDSLEHV TAVATLWLQARNRDNANVANFMPSGWTNGRLPSQAVVFEHEGSEIKIGYKLMRDGSFK LSTGKNANIYSADNHGIDCVYDDKRHYAKVTKDADKLLVHMPYGDVMLNIKPKFVIPG LEVAKGGLTAPMPGKVIDIKVKKGKKVKTGDTLVILEAMKMEHSIKASEDGTVTQLLI SVNDQVENGALLMIVE" gene 760656..761267 /locus_tag="NT01SARS_0807" CDS 760656..761267 /locus_tag="NT01SARS_0807" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72309.1" /translation="MQKIEFEKSKIFNKPKIQTKRHTEIIESLEKMLEKGVPDLTMSE FASKLKISLRTLYEIAPSKDKLILMTMDNILTKLGKHALDSVSNIESPIRRLEKYLFI VNQAVGPKFDRFMKDIEKIDGSKKMADYHENFISTYTEKLLNEAIEKKEIQQINTKVF AVLFSSIGREFLNEKNRKSISTTPDENANSITSIILNGIKLKN" gene 761268..763040 /locus_tag="NT01SARS_0808" CDS 761268..763040 /locus_tag="NT01SARS_0808" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72310.1" /translation="MEKEHIKIANCSGFYGDKLSAAKDLVEGGPIDVLTGDYLAELTM TILYSQKIKRGEDKGYVGTFLKQVKEIAETCDKENIKIVTNAGGLNPKSMANEIEKIL HEQSLNMKVAYIDGDDLMPRMEELKKEGQKFTNIEKNVSIEKSGYMPLTSNAYLGAWG IKEALDHGADIVVCPRVTDAAVVIGPAAWKFNWERDNFDALAGALAAGHIIECGCQAT GGNYSFFKEVPSFDNVGYPIAEIFEDGSFNITKHPGTGGLVSKGTVTAQLLYEISSPA YVNPDVVSHFDTLKIEELEKDKVHVSGCRGSSPPKDHKVCINLAGGFRNGMEIILTGM DIEEKAKVFTEVLFNSVGGQEQFDEVFIELQRTDKENPTTNEQAMASLVISVKSSNQE LVGRLFSAKIIELALANIPGFFAESGPKSSGPVIIYWPALVDSKYITEKVHIDGKEIE VVPTSQLDYEEIYYQREPISIDDVEISDQKEIYFGDLFGTRSGDKGGCANLGVWAKNN LSYSFLYNFLTIEKLKELLPDLSEYKIERFELPNINSLNFYIHDILEDGVSSNNRKDG QAKSLGEYLRVKKILVPDSILLET" gene 763043..763828 /locus_tag="NT01SARS_0809" CDS 763043..763828 /locus_tag="NT01SARS_0809" /note="identified by match to protein family HMM PF00378" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="EJP72311.1" /translation="MDKLSLDGLNFETICLEVDRKILTITLNRPEKKNAMNNVMMDEL NYALTYAKQEDAIRVVVIAANGDIFCAGADLSRSESVSNVPKLPNADDISLSLRHLYK PVICKIQGSVLAGALLIVTNSTHAIAVKDATFSAPEIHRGLWPFMVMAGLFRVMPKRA GLDFIMRGQPIDASKAKKWGLINEHVDKTNLDKRVQALATELASLAPETMKFGLEAYE KQDSQDFNDALPYLKEQIAKCFEGRDAKEGIAAFLEKRKPNWD" gene 763834..765060 /locus_tag="NT01SARS_0810" CDS 763834..765060 /locus_tag="NT01SARS_0810" /note="identified by match to protein family HMM PF00441; match to protein family HMM PF02770" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase" /protein_id="EJP72312.1" /translation="MDLNFGSEYKEFTNEVKKFCKKYSGVNFSDSAKVPLSASFKSSG IQMKRSDWQKILIEQGYFARSIPKEYGGYGGEADIIKSRIIASEFAKAKIPPPMGGQG IDMLVPTLLELGTEEQKQKYIKPTLHGEIIWCQGYSEPNAGSDLASLQTKGELINDNW VINGQKIWTSTAQYSQMMFCLVRTEPDASKHAGISYILIPMDTPGIEIRPLVDMTLNA GFNEVFFTDVTVPQENIVGKRGEGWAVANATLSHERGSLSDPNAMMNRLNSLIEIMKN ETINGQKAIDNPVYKDKLMKIQGKVIAFQSNSLRVLSAKLNKNQDTKIAGMIQKLNGT ELRHELEGFAIDVMGELGTLYENSPNIRDGGSWQVAYMYFLGLIIGGGTSQIQKNIIS ERGLGMPREPKVQKGE" gene 765062..766150 /locus_tag="NT01SARS_0811" CDS 765062..766150 /locus_tag="NT01SARS_0811" /note="identified by match to protein family HMM PF00441" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="EJP72313.1" /translation="MYFGLSEDQIFFQDNVKKFLEDNAPLDVIRNISKGEDLNQKNEI HSGIINLGINNILVPEEHGGLGLDLLFATAISQSIGGAVAPLPYCGSYVMAPIAIQIG ASKSQKENIFNEMSSGNTKFGIAFSEYFGSRDSSSINFSNEKINGKTIFAIDCDYATD VLVSDASGKIGIVSIEDKNIEIVDLITVDKTRTYKEIKFSNANVEILENTKKNTDAIE KALDAGRIITAADTLGASQAMLDKAVSYSKERKQFNRVIGSFQAVKHMCAEMTADLEP CYSLVWHAAHSFDNNDDDSKLMACHAKSHISEVAKMVSKKATEVHGGMGFTDLLGLHF WFKRIGLNRQLLGAPEIVRNEAAKAQGL" gene 766158..768200 /locus_tag="NT01SARS_0812" CDS 766158..768200 /locus_tag="NT01SARS_0812" /note="identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225" /codon_start=1 /transl_table=11 /product="peptidase, S41 family" /protein_id="EJP72314.1" /translation="MYFFCSILFIFSLAVSSDSYKSIEVSEVKENLSNEIFKKLSREH YVKNFDKTDFNKNYINAVFKRLDEDKKYFIQNEVDSFIKESKYETNNFDIALAYKIIN LYFERLIDFSSFQIDLLENYNFDFDREEFLDIYTDDNIWQEDLSQLKALWRLETKNDL LVSMLSDSVSEDPKIDIIKRYKNRIRRINQQKEEDIFSLAVNILSNQFDPHSSYLSPR SAEDFDMNMSLKLSGIGALLGVEDDYTKVISLVPGGPAEKSGKIKPEDRISKIKQGDE DEFIDVVGWRIDEVVDLIRGEIDTELQIEFISFDSDIDNRKIVTLKREEVKLEDRAAQ SQVFEMNDNKIGVIDLPSFYIDFEEYANRNSDYRSSSKDIRNILNKFNEDNVDAVVLD LRNNGGGALIEANKIIGLFVSSGPTVQVKQKRGYIQPYGDSRAVQVWNKPLVVLVNRY SASASEIVAGAIQDYRRGLIIGQRTFGKGTVQSLENLSQGQIKITESKYYRVNGMSTQ NKGVKPDIELPVTWDIESVGESSFPTALEWDVIRPYRHKKFSINSEVIEDVIKLHNDR LAYEPNLNYLKEVRKRYDLNKDKKLLSLNLEDRKTQKILRREWLLSVENKRRSSIGLE AFASYDELNDFNKENEDTSNTSNRIDLINDFQLIESTKIVNDFLNLEKEKIITMIN" gene 768202..769014 /gene="xth" /locus_tag="NT01SARS_0813" CDS 768202..769014 /gene="xth" /locus_tag="NT01SARS_0813" /EC_number="3.1.11.2" /note="identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease III" /protein_id="EJP72315.1" /translation="MKIVSFNINSIRARPHQIEHLRDTLDPDVIGLQETKVNDPEFPL EIINEIGYHAEFWGQKGHYGVAILSKSKPKETIKGFINDTEDDQKRFIQSTFKFGDED ITIMNGYFPQGENINHETKFPKKIKFYNDLKDHIIDLKKTTSNLIVMGDFNVSPEDID IGIGENNAKRWLREGKTSFQPQEREMWNSIKDLGFIDSWRELFPNESSIYSWFDYRSR MFDQNPKRGLRIDHILLSDNLKKSINNVGIDYDARSMEKPSDHCPVWLELNE" gene 769007..769444 /locus_tag="NT01SARS_0814" CDS 769007..769444 /locus_tag="NT01SARS_0814" /note="identified by match to protein family HMM PF00583" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="EJP72316.1" /translation="MNNIKYRTPLNSDEFKKYDLFRWRILRKPIGKSIDSLKDEYENS SYHLIGVSDNEVIACGRLHFNTDSEAQIRYMAVNNNLQGMGIGREIIGHLEEYALEQN AKKIVLNARDHVIKFYEKSGYQVVRKFYGSDTNIPHTTMMKKL" gene complement(769445..769903) /locus_tag="NT01SARS_0815" CDS complement(769445..769903) /locus_tag="NT01SARS_0815" /note="identified by match to protein family HMM PF00383" /codon_start=1 /transl_table=11 /product="tRNA-specific adenosine deaminase" /protein_id="EJP72317.1" /translation="MHFSDQEKIFMKTAMQLAQESYNLGEVPVGAIVVKNNEIIGRGR NTVISDNDVTAHAEINAIREASKMIGNYRLVDCNMFVTLEPCHMCAKAIVDARLNSII FAAKEPKTGSIFSIDNFFEKKVLNHKVNYKFGLFEEDSSKLLKDFFEQRR" gene complement(769905..770375) /locus_tag="NT01SARS_0816" CDS complement(769905..770375) /locus_tag="NT01SARS_0816" /note="identified by match to protein family HMM PF08547" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30" /protein_id="EJP72318.1" /translation="MVIDNLNDVRANWSAISDQVMGGISEVNFYEMEEDGQKFYRLEG NVSTENNGGFIQSRVGLNIKAKDFNGIRIKVRGNNNEYFVHLRAPRMLPWNYYYAEFY ASSDWEIIDIPLSSFKYSRNQNDNLNSKVIRSIGIVAYGKDFSAQLDLANIELY" gene complement(770432..771583) /locus_tag="NT01SARS_0817" CDS complement(770432..771583) /locus_tag="NT01SARS_0817" /note="identified by match to protein family HMM PF01571; match to protein family HMM PF08669" /codon_start=1 /transl_table=11 /product="glycine cleavage T protein" /protein_id="EJP72319.1" /translation="MSESKLPLLIGIGTRIRKSPYYESNLKYGVTGFTVYNKMYLPTG FSGPEKEYESLINDVTFGDFAAERQIEINGKDAYKFVRYIQPRNLEKCEIGFCKYIIL TDMDGGIVNDACLLRLEENKFWISPGDGDVILWLQGIAINSGMDVSIHEPDVSPLQIS GPKSGKLIQKLFNGEHDDLGYYKARQTQLDDIPMVIARTGWSGELSYELYLQDRKLGN KLFELVYEAAEEFNGRVIAPNTIRTIEGGLLSYGSDFGREHNPFTIGFGRLVDVDQEI DFIGKEALKKIKQNGTKEKLVGLELEGDPLTKAPENFWPVNDKDKKVGRVSRAYYSPR VGKNIALAIVDIEYADEGTIVSVDSPYGDFESKVVNIPWFQADKDTHLD" gene 771691..772794 /locus_tag="NT01SARS_0818" CDS 771691..772794 /locus_tag="NT01SARS_0818" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72320.1" /translation="MGKKRFFDDRLKYLSFIQNTSEKKIISTEIYPHIARLSQNKSYL RILDAGTGDGTIISNVIKSFHRYHAYTSLLITGKEISYEDLKNTLEKMPDRFVEHPNL FVTMTNVKFSELGLIENSSKIKNKKIKEFNLVLKSNNSFEFNSQIAGSKLGNFIKKNW GIEIDNKGRTSYSNPCLIRIYREDNKGHLEQFLRNDYKNNDYDLIIASQAYRAASSVE VKVRNVIGPLMKLLNKSGKLLVTHSIGGPSIQKILKLAFKDKEAFPNTAKNILEYLKD NPVCENSLFRYVKPKNYAFDFKKTPDQTISELFGHDSDAKLANILYVGQIPEKDIQNL ESNKSLYNKVLKTIKSQRRLQFKNEIFSISKIR" gene 772809..773204 /locus_tag="NT01SARS_0819" CDS 772809..773204 /locus_tag="NT01SARS_0819" /codon_start=1 /transl_table=11 /product="adenylyl-sulfate kinase" /protein_id="EJP72321.1" /translation="MGLPGSGKTYLAKRLQPLLKAAWYNADIVREMANDWDFSPEGRI RQSLRMKNLADYEKSHGRIVICDFVCPTRETKKNFDPDITVWMNTIKAGRFEDTNKMF EEPKDVNFRITEMNDKNHEFIAKEILKNV" gene 773197..773586 /locus_tag="NT01SARS_0820" CDS 773197..773586 /locus_tag="NT01SARS_0820" /note="identified by match to protein family HMM PF01467" /codon_start=1 /transl_table=11 /product="cytidylyltransferase" /protein_id="EJP72322.1" /translation="MFDWKKPTVQMLGRWQPWHKGHQELFKRCIKKTGQVVIQVRDVE GVSGGTGQDDNPFGWEEICKNIEENLESDGFQRGVHFEIMLVPNITNITYGRGVGYKF EEEIFEEEISSISATEIRAKLREKGEL" gene complement(773587..774759) /gene="lys1" /locus_tag="NT01SARS_0821" CDS complement(773587..774759) /gene="lys1" /locus_tag="NT01SARS_0821" /EC_number="1.5.1.7" /note="identified by match to protein family HMM PF03435" /codon_start=1 /transl_table=11 /product="saccharopine dehydrogenase" /protein_id="EJP72323.1" /translation="MNVENKFDFIIFGASGFTGKLVVEYALEKYIDDKSVSWAIAGRN ETKLHQLKDEMNIPDDIGIFIVESDDQNSIEEMVDQTKCVLTTVGPYQLYGEKLIRSC IASGTDYVDLCGEPGFMHKIISDCSAEAKQNGSRVIFSCGFDSIPFDLGVFLVQEEVM SKIGKYAPSVRGRVRAMNGEFSGGTAASMKATMSSLKTNPELINVLINPHGLCEGING AQQEDDTKPKYDEELDVWVAPFFMAPINTKNIHRSNKLMNHIYGKDFLYNEMWITGPG EQGKAAAEMLAGNNPIAGDDVPAPGEGPSREKRENGNYDILFCADVDGKVFKASVSGD MDPGYGSTSKMITESAICLVKDAKELEGGIYTPAAALGNKLISRLEANAGLTFIIE" gene 774834..776642 /locus_tag="NT01SARS_0822" CDS 774834..776642 /locus_tag="NT01SARS_0822" /note="identified by match to protein family HMM PF00501" /codon_start=1 /transl_table=11 /product="long-chain acyl-CoA synthetase" /protein_id="EJP72324.1" /translation="MIKNILEFFRVISELRFIIPLLKYKWPNPDDNASLAHTFQDSVD KYGNQNFIYFEDQILTYSQTNEAANILANRLIKDGVTHSDRVVLFMENRPEYIISILA LNKIGAIGVLINTSLTGAPLVHCINSSDSKKCIIGAELAAPLEGVLNEINVTDKSNIY WVKDGENYSCPSWASDLDTLLDESEKQTPKEIGNVTAKDTAFYIFTSGTTGVPKAALF PNTKIVAASTNITKAGYRMNNEDCLYNCLPLYHSTGLMLGLCACIHVGASTFIRRKFS ASAFWKEAQKFNTTAFVYVGELCRYLSFQKECEEEKNNPISKMVGNGLRPDLWDCFRN RFKVERICEIYGASEGNGMFMNLLNKDQTIGMTNVDLALLEYDVAEDKLKVDENGKYI EVQEHQPGLALVKIGPNAVYNGYTDKKASEEKVITNVFEEGDRWFNTGDLIKTMDVGF SLGRKHYQFVDRVGDTFRWKSENVSTNEVAEILNTFEQVNMANVFGVKVPQSEGRAGM VAFNCAIDEFNWNEFSDFVSEKLPSYAQPVFVRIIEELETTGTFKLKKNDLREEAFHL EKVGQDQIFIKKPGEKSYVPLESDFYEVIMSGSAGF" gene complement(776644..777165) /locus_tag="NT01SARS_0823" CDS complement(776644..777165) /locus_tag="NT01SARS_0823" /note="identified by match to protein family HMM PF07883" /codon_start=1 /transl_table=11 /product="cupin 2 domain protein" /protein_id="EJP72325.1" /translation="MRRIVTGHNEEGKSVITIDGPPARSIGEDVGGLFELWNTDGQDI ISSDVIDRADEEIILSPPRGGTKFRYFQINPIPEGIPENVMQDMAADAFEKIGAGHHR IDTSKHPAMHKTETIDYIILLKGDVTLILDEEEIDMKPFDVVVQRGTNHAWVNNGTEP ALLIAVLIDSKII" gene complement(777167..778177) /locus_tag="NT01SARS_0824" CDS complement(777167..778177) /locus_tag="NT01SARS_0824" /note="identified by match to protein family HMM PF00933" /codon_start=1 /transl_table=11 /product="beta-L-N-acetylhexosaminidase" /protein_id="EJP72326.1" /translation="MKDMYGRIMIDVEGTSLSQQDRELISNGNVGGIILFSKNFNSFE QISDLVNEIHAIKENILLAVDQEGGRVQRFSKDFTQLPSLQDLAKYSEINNDPDICKE VAWLTSSELIAAGIDLNFAPVLDIDESDSAIIGDRSFSSKTDEVIKHAEKYIEGMHEA GMQATAKHFPGHGGVSEDSHVILPEDKRSLELLMRSDIQPYIKLNKKIDAIMCAHILY SLIDDKIPSYSKFWIRDIIRKELNFEGVIFSDDLSMAGAGEESCRVKAAKSIEAGCDM VLICNNRKDAISTINYFDELGIKPSKKISNLKKTTNIDWDELTNFERTVNIKHTLKNM RS" gene 778228..778980 /locus_tag="NT01SARS_0826" CDS 778228..778980 /locus_tag="NT01SARS_0826" /note="identified by match to protein family HMM PF00106" /codon_start=1 /transl_table=11 /product="putative short chain dehydrogenase" /protein_id="EJP72327.1" /translation="MSKKAIITGSSSGIGYQYAKYLSKQGWYLDLISQDQKRSKNSEE NLSYEKANFHVYDLGLKESINSIINTIDVPDLIVANAGIAINGVIGELNPDEKEYYYY LMCGGVIDLIEGYVPEMIKKGSGRIVIISSIGATTAMPKSSLYSSIKAGIHAYGRSIS SELKNENISVTVSLPGYVRTNAHKRAGLNHLERKVPNWMWVNPEQVVKETEKASLRGK SEIIPGSVYKLVRPFLNFKPAMRAWRNLTKRS" gene complement(778977..779519) /locus_tag="NT01SARS_0825" CDS complement(778977..779519) /locus_tag="NT01SARS_0825" /note="identified by match to protein family HMM PF00156" /codon_start=1 /transl_table=11 /product="adenine phosphoribosyltransferase" /protein_id="EJP72328.1" /translation="MSDRLDLKKYIRTVKDFPIDGIVFRDITSLIETPEAFIKTCDEL TRITKEFGANIVASIESRGFIFAGTIARDLELPFVLARKPGKLPNQTYKKSFDLEYGS TSIEIQQNTNVNKDQKIVIVDDLVATGGTAIACAELFTENFNINASDILILTVIDLPD LGGSDLIKNQGYHIETIVDY" gene complement(779526..780314) /locus_tag="NT01SARS_0827" CDS complement(779526..780314) /locus_tag="NT01SARS_0827" /note="identified by match to protein family HMM PF00378" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase domain protein 3" /protein_id="EJP72329.1" /translation="MQDILKVEKNTDSIVRLILNDEKSGNSLSDEMISLMSSRLEEIS NNEDIKVVVIASTGKIFCAGHNLKEMTEARQNNDEGKSYFTNLFQSCSDMMQSIVNCP KPVIAEIDGIATAAGCQLVASCDLAIASDTSSFATPGVNLGLFCSTPMVALSRNVKKK DAMKMLLTGEMIDAEEAKRISLINDYVVSEKLSVEVMNLAKKIASKSMKTVNIGKSAF YKQAELSLSDAYRYTSEVMAKNIMNDDAKEGIASFIEKRDPNWD" gene complement(780346..780747) /locus_tag="NT01SARS_0828" CDS complement(780346..780747) /locus_tag="NT01SARS_0828" /note="identified by match to protein family HMM PF02629" /codon_start=1 /transl_table=11 /product="CoA-binding protein" /protein_id="EJP72330.1" /translation="MTEKPIDILKKVRSIAIVGISKNVEKDSYVVMQFLLENGYDVFP VNPNYKNELILGRKCSAYLKDIDENIDMVDIFRKKEFVYNITKEAIDINAKVLWTQLD IICIDSMNLATNAGLDVVMNKCPKIELINNS" gene complement(780754..781362) /locus_tag="NT01SARS_0829" CDS complement(780754..781362) /locus_tag="NT01SARS_0829" /note="an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop" /codon_start=1 /transl_table=11 /product="putative NADPH-quinone reductase" /protein_id="EJP72331.1" /translation="MKKICLIFGHHNTKNSFNAAIRDTFIDEATKLGHKIDLINLFDE VEQLPFYRSDINPPPDLVLRYRKRLEDADVMFLMSACHNLRMNGILENWIDWVLHPTW FFSYRSILPDSKFLGNYGYPVAGAMKNKIGIVSMTYGGPMVSYFNFSLFDNIPFRRLK KSVFQLGGLKTKYLRFYSVLPNMDKKTFDKNMNKVRVFARKL" gene complement(781368..782675) /locus_tag="NT01SARS_0830" CDS complement(781368..782675) /locus_tag="NT01SARS_0830" /note="identified by match to protein family HMM PF07690" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="EJP72332.1" /translation="MMVGASKQYRNFVLILLTIVYGFNFIDRQIMGILAPFIQKDLGL TNTELGLLIGLAFAVFYTFVAIPIAWLADRYNRVNILSIALATWSGFTALTGLANNFI QIGLARMGVGIGEAGGSPPSHSIISDLFPKEERASALGVYSMGIPIGIMAAYFVTASL MGSGDDVDWRRIFIVLGLTGIGLAVIVKLVLKEPVRGAMELNQGTEIKKPPFKESLKE LIKIPAWWAMCFGIAFGSFVSYAKSAFQTKYLVTLDPSFDFQTLVIILGIMNGTTYAA GAFFGARLADKWGKRDVRAYGWLPAISIGLALPVALITWWVPSIEVHLVFATLFLLLI GIYLGPSFAIAQTLAPIHMRAMSTALFFFILNMIALGGGPTFAGWIMDLFKESYNELE SVRYAMTVTSIFFIPSVISFLLVAKVLPRDWKAAEERNLKLAK" gene complement(782746..783981) /locus_tag="NT01SARS_0831" CDS complement(782746..783981) /locus_tag="NT01SARS_0831" /note="identified by match to protein family HMM PF07690" /codon_start=1 /transl_table=11 /product="transporter, major facilitator family" /protein_id="EJP72333.1" /translation="MKFFGWRMVFTGLTLEFTVVGFLFYSFPVIWPYLISELGMTESQ LGMVSAFYFIPVAVLAIIVGRALDKYSVKNFMMIGAIIYAVGLFSLSFINSYWSLLTI YLTILALGSIMMGNLAVSKLIANWFDKNAGRALGIAAIGISFSGVMLPLIVDPLLELV GWRNVYVIFASIVFFIILPLVFFTVIDDPKAVNQVKDGVKKDYKEEFIPEEMTAKDLL SKKVFWIISLAFAFQFLSMMGVLAFLPIHASKMGLNETWNLLGLPVKQYVFAYSLAAF GGVLGKIIFGYLMDMMKAAHPPMIAMLLQAIGIFGITYLNEPNIFLLSAFIFGLGFGA ATPLMTACYLRIFGAHNLGKARGMSSPIISPLQPIGILITSILIGFQDTYFAAFNIMG CFALVAVILASQIQEPEKI" gene complement(784088..785575) /locus_tag="NT01SARS_0832" CDS complement(784088..785575) /locus_tag="NT01SARS_0832" /note="identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888" /codon_start=1 /transl_table=11 /product="GMP synthase (glutamine-hydrolyzing)" /protein_id="EJP72334.1" /translation="MNKLSVNNKAIDTILVLDFGSQYTQLIARRVRESKVYSEILPWD INEQKIRMLNPKGVILSGGPNSVTESFTPRVPQVIFDLSVPVLGICYGMQTLAEQMGG HVVSVDQKEFGHSSLDVVSNSKIFEGINKKLNVWMSHGDQVQDLPDNFNLIASTSTAP IAVMEHESLPIYGIQFHPEVTHTEQGKKILDNFILNICHAKTEWNIDDVISQRIHDIK EKVKNDKVLLGLSGGVDSSVTATLLHKAIGKNLTCVFVDNGLLRKGEAEDVMQTFKEN MSLNVIKSDSEEIFLRHLKNIEDPEQKRKIIGRTFIDVFDAEAIKLKDIKFLAQGTIY PDVIESSGSESKEARTIKSHHNVGGLPDEMKLDLVEPLRDLFKDEVRKMGKELGLPQE MLDRHPFPGPGLGVRIIGEITKEKTKILKEADHIFIQELIKADLYDQVSQAFAVLLPV KSVGVVGDERRYAEVIGLRAVETVDFMTAKWAHLPYDFLELAEQK" gene complement(785583..787046) /gene="guaB" /locus_tag="NT01SARS_0833" CDS complement(785583..787046) /gene="guaB" /locus_tag="NT01SARS_0833" /EC_number="1.1.1.205" /note="identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302" /codon_start=1 /transl_table=11 /product="inosine-5'-monophosphate dehydrogenase" /protein_id="EJP72335.1" /translation="MEKLKQKALTFDDVLLLPSYSDFLPSDANTESKLSKNISLKIPL ISAAMDTVTESSMAIALAEAGGIGIIHKNNSIKEQASLVRSVKKYESGIVRDPVTISS KKSIGELKQLTSELSISGMPVVDDGDLKGIVTSRDFRYAENMESDVSTIMTPLEKLVT VKEGVSQTEVMQLMYKNRIEKVLVLDDEDKLSGLVTMRDIENTAKNPDATKDDFGRLI VGAALGTDKDTFDRAEALFNEGVDVLVIDSAHGHSKNVIETIKAVKQKFPSVDVIGGN IATADAAMELVKAGADAVKVGMGPGSICTTRIIAGIGVPQISAIFDVSTALKNTEVAV IADGGIRFSGDIAKAIAAGADSVMLGSLFAGTEEAPGKVELFQGRSFKTYRGMGSIGA MTEREDANRYMQEDVAADKLVPEGIEGRVPYKGLVLNVVNQLIGGLRQSMGYIGCKNI SEMHKKSQFVEITNAGMTESHVHDVMITKEAPNYQRS" gene complement(787113..787676) /locus_tag="NT01SARS_0834" CDS complement(787113..787676) /locus_tag="NT01SARS_0834" /codon_start=1 /transl_table=11 /product="phosphoribosyltransferase" /protein_id="EJP72336.1" /translation="MEKLYIRSEDLLKDSFQLAWNVYESGFKPNYIVGVWRGGAPIGI AVQEFLSVLGVKSDHVAIRTSYYTGIDSKKDSVQVYGLNYVIRKLESEDRLLIVDDVH DTGNSISQIITDLKKACKKNTPEIKIATPYYKPNKNESEYKPDYYLHETDQWLVFPHE LEGLSLEEIQKNKPELQDLMDKIKEYL" gene complement(787728..790055) /locus_tag="NT01SARS_0835" CDS complement(787728..790055) /locus_tag="NT01SARS_0835" /note="identified by match to protein family HMM PF00593; match to protein family HMM PF07715" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="EJP72337.1" /translation="MTFKKLNFIKLSLLALVFLLNINDVQSQEQTIEDVIVSAEKRDE SLQTVSQAVTAITDSELEAKNITSFVDLTAIVPGVTVAKNEGYKTVISIRGIGNETNQ NAIAAPSVAYHMDGIFIASPFSLQTDFIDIQRIEILRGPQGTLFGQNSTGGAINVISN KPTSEEAFSKADITIGDYGLTKIRGTSNIPLSETVSTKFSFATTDRDGFSENTFTGQD LDDASNVSIRSDWMFELSDTTSLRIFGQYFDVDRNGAAIRGIDDQSSNMRKLSQNTIS NQELTSSVFAVIYESDLGYANLKILASTQEDDISVTRDNDRHNFGDPVLSIPGLGAGA TYQQAEFRPETSLVETKTFEINLISNEPLMDGKLDWTLGAFYMEHEIENVIRGYRDDD LDGVFKYVCDEPFADPSYCYTHDFGIPGRFDIFGPSADVDFFTDAFPYRESLSVYAQT TYSFSDTFRLVSGLRYSEDTFGTDVANFFNAGDQFQEEGTTDEVTSRITGEYDLGDAT MAYLTLSKGFKPGGSNLTFGFDGDNAPPMVFPTFEAETVDSTEVGLKTDLFDGQARAN VAVFFYDYENLQFQATDPDPYRGGVANIPESEMSGVEIEFTGLISDSLTFDMNLAFLD SEVTSDYEVLDNVDAYQYFFGEEDLRYGLRENIRGNKLAKSPEFTADLSVVYETDLAS GNSLTAIMQYVKRGEFEQRVSNNPIVDSIPAYDIFNITVGIDFMNSVSVDFMLLNATD EDGINSSMTDVFGVAASGLELIPPRQIMTRISYDF" gene 790220..791518 /locus_tag="NT01SARS_0837" CDS 790220..791518 /locus_tag="NT01SARS_0837" /note="identified by match to protein family HMM PF00860; match to protein family HMM PF00916" /codon_start=1 /transl_table=11 /product="inner membrane protein YieG" /protein_id="EJP72338.1" /translation="MKKTLEQIFKIREHNTTIKKELLAGFTTFITMAYIIFVNPQIMS STGMDQGAIFVGTCLAAAVACFVMGFIANWPIGLAPGMGLNAFFTYTVVGEMGYSWEI ALGAVFIAGILFFIMSITRLRGWMITSIPLNLRIAMGAGVGLFIGLIGLKNGGIIISN EATILSLGDFKKVETLLAAVGFLVISIFSVRKIPGAIIIGILITTLLAMSLGLVQFNG LLSYPPDISPVFLKLDIFGALNIGMLTVIMSFLFVNLFDTTGTLVGVATRANLIDVNA ESKGLDNALKADSSASIFGTFFGCSPVTSYVESSAGVEAGGRTGLTAIVVGALFIFAM FLSPLAAIIPAYATSGALIYVAILMLGGMEKLNWSSTVELLPALVIIVMIPLSFSIAD GIALGFLTYVSLKLATGQIRNISSGAWFLTLIFISKFIFL" gene complement(791513..791740) /locus_tag="NT01SARS_0836" CDS complement(791513..791740) /locus_tag="NT01SARS_0836" /note="identified by glimmer; putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="EJP72339.1" /translation="MEQNEKPFQFLAWIATFILILAAILASFVPALEYHHWAFILANS LWVVVGFLWKEMSLIVLNAGLTIIYIFGLIL" gene complement(791762..792100) /locus_tag="NT01SARS_0838" CDS complement(791762..792100) /locus_tag="NT01SARS_0838" /note="identified by match to protein family HMM PF01329" /codon_start=1 /transl_table=11 /product="putative 4a-hydroxytetrahydrobiopterin dehydratase" /protein_id="EJP72340.1" /translation="MENDLTKNRCEACRIDAPVLTDKEIEQLLPQIPSWIVSEQDGIK KLICSYAFLNYEDSVKFTNEVANLAEQEDHHPEIILEWGKVTVVWWSHKIMGLHKNDF ICAAKTDSIL" gene complement(792103..793494) /locus_tag="NT01SARS_0839" CDS complement(792103..793494) /locus_tag="NT01SARS_0839" /note="identified by match to protein family HMM PF00206" /codon_start=1 /transl_table=11 /product="fumarate hydratase class II 1" /protein_id="EJP72341.1" /translation="MKFRTEKDSLGEVKVPAKALWGAQTQRAVNNFPISGIKMDFPFT KSFVSSLGLIKDAAARANLRLKLISTKKSKAISRAAKEVWKEKHHKEFPIDVFQTGSG TSSNMNANEVIANLASRYSKLDINPNDDVNMSQSSNDVIPTAIKLSAIMDLDGKLFPA LDELIDSIEKKAKSLEGVIKTGRTHLMDAMPIDFSEELGAWASQLSASKEMLRTIEKR FFELPQGGTAVGSGINAHKNFSKYFAQELSKLCNSKKRFSPSKNFYHELSAQDCSVQL SGELKNLAIVLMKISNDLRWMNSGPLAGMSEIELKALQPGSSIMPGKVNPVIPEAVAM ASADVIGNDVSITVAAQSGSFQLNVMLPVIAYNLLKSINLIAGSMKALSKNAIKTFKV NEKNLESSLSKNPILVTALNPIIGYEKAAEIAKKAYKENRPIIEVAAQETDLSKAKLL KLLDPKKLAKGGI" gene 793554..794363 /locus_tag="NT01SARS_0840" CDS 793554..794363 /locus_tag="NT01SARS_0840" /note="identified by match to protein family HMM PF00596" /codon_start=1 /transl_table=11 /product="meiotically up-regulated protein 14 protein" /protein_id="EJP72342.1" /translation="MSNVAPIKIDTTDGRLPIKDKGLVFQEFANPAEERRNQLEKLAA GFRLFDYFGFNEGVAGHITYRDPEFQDHFWVNPLGVHFSQISVSDLLLVNHDGKVVQG DRDVNVAAFAIHSRLHKARPDVNAAAHSHSIYGRTFSTLGKLLDPISQDACAFYENQG IYKDFSGVVEEVDEGDEIAKALGDKKVAILQNHGILTTGPSVDIALWFYMSMERCCQA QLMAEAAGKPVVIPHETAIKTREFIANDIAAWASYQPAFDKIIKMQPDLLD" gene complement(794365..795783) /locus_tag="NT01SARS_0841" CDS complement(794365..795783) /locus_tag="NT01SARS_0841" /note="identified by match to protein family HMM PF00171" /codon_start=1 /transl_table=11 /product="betaine aldehyde dehydrogenase 2" /protein_id="EJP72343.1" /translation="MSNDLNFYINGEWVKSESNELIDVINPATEEVIGQVTAGTKEDI DKAVSAALEAFSTFQQTTKEQRIELLNNIISEYENRYDDFVQIITKEMGAPIWLSEAA QAKTGIKNIHETLDALKDYEFERPEGDYTLIKEPIGVIGMITPWNWPMNQITTKVSAA LAAGCTMVLKPSEISPYCAMLLAEVFDKAGVPNGVFNVVNGYGPTVGAALSEHPDVAM MSFTGSTRAGIAVAQASAVSVKRVHQELGGKSSNIILDDVADLEKSVKGGAGHCFLNS GQSCNAPTKMLVSAKNYDKAVEVAVATANNTTVGDPNGEFRIGPIANKTQYEKIIKLI EIGIEEGATLVAGGVEKPEGCEKGYYVRPTVFANVTNDMTIAKEEIFGPVLVMIKYES EDEAISVANDTEYGLAGYVQGEPEHAREVAGKIRAGQVIINGGARGTGAPFGGYKASG NGREHGIHGLEECLETKAIIAP" gene complement(795848..797527) /gene="fhs" /locus_tag="NT01SARS_0842" CDS complement(795848..797527) /gene="fhs" /locus_tag="NT01SARS_0842" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01268" /codon_start=1 /transl_table=11 /product="formate--tetrahydrofolate ligase" /protein_id="EJP72344.1" /translation="MSTYPSDLEIASAANKISIDKVAATIDITDEDLIKFGDDKAKIS SSLIEKLKKNEDGKLILVTAISPTPAGEGKTTTSVGLVDGLCHIGKKAMICLREPSLG PCFGMKGGAAGGGYAQVIPMTDINLHFTGDFHAIGAAHNLLSALIDNHIHWDNQLNID PRRITWKRVVDMNDRSLRDITCGLGGTGNGIPRQSGFDITVASEIMAVFCLASDIDDL QKRIGNIVIGYTKDNEPVKAKQLKADGAITALLKDAFKPNLVQTLENNPAFMHGGPFA NIAHGCNSVVSTKTALKLADYVVTEAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATT KALKMHGGVKKEELNIENIQAVVKGCENLGRHIENIGKFGVPVIVAINDYVTDTAEEH KQIINFCKNVGVQCKISSHWEKGGEGAADLAKEVAKIADSNSAEFKTLYPDNMSLWDK TEHIAKNIYGAAEIIADKKVRNQFLKLEKDGFGDYPVCMAKTQYSFSTDPLLMGAPKG HEVPIREVRLSAGAEFIVVVCGEIMTMPGLPRVPSAEAIGLDENKEIKGLF" assembly_gap 797608..799178 /estimated_length=1571 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(799822..801240) /locus_tag="NT01SARS_0844" CDS complement(799822..801240) /locus_tag="NT01SARS_0844" /note="identified by match to protein family HMM PF00875; match to protein family HMM PF03441" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photo-lyase" /protein_id="EJP72345.1" /translation="MKTLVWLRNDLRMDDNPALREACKLSEEVHSIYIYSKNQNNKHN DANCKIDFFIENLKDLAKSLSKVNIPLTVIYSDGFNDNAEIIKQYIELNSIEKIFWNN QFGEDEINRDESVKDLLQNSNIEIKTFDEQVVFEPGSILTGEGKPYSVFTPFKRKWIE NFTLDKLDIEFKYTEKKSTKIKSNINDFNFNFQKTHSVDMSLWPIGEHEAQMRLHSYL DKNIFKYAQDRNDPIIDGTSRLSAYLASGIISPKRCILEALKLNNFELDSGEKGIVKW IDEIIWREFYKNIMFSFPKVSRGQPFQEYTKKIKWRFNDDELNAWKSGNTGFPIIDAA MKQLINEGWMHNRLRMVVAMFFTKNMLHDWRLGEEFFMQNLIDGDFSSNNGGWQWSSS TGTDAAPYFRIFNPLTQSKNFDSNGLFIKKYINELKDLDKKDIHDPDESIRNHCNYPS QMLDLKQSRLRAIDAFNDAKNT" gene complement(801244..801999) /locus_tag="NT01SARS_0845" CDS complement(801244..801999) /locus_tag="NT01SARS_0845" /note="identified by match to protein family HMM PF00459" /codon_start=1 /transl_table=11 /product="inositol-1-monophosphatase" /protein_id="EJP72346.1" /translation="MPELDLSKEINVAIKAALASGKYLKKNKIELNKTSSSAPRDIKL DADIASENLIKKIINESSNYGILAEESGESSTDLGNTFWVVDPLDGTANYNRDIPICC VSIGMVKNMKPLFGVIYDFNSDEIYCGDCINKVATLNNSPIQVSKVDDKKDGVLITGL PFNTDYSDASLNNLISDMQSWKKTRMIGSAAMASCYIASGKAELYKEKGIYLWDILAG AAIVEAAGGLAEIKNVRDNYQVDVTFSNQNIKD" gene complement(802000..802500) /locus_tag="NT01SARS_0846" CDS complement(802000..802500) /locus_tag="NT01SARS_0846" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="L-sorbosone dehydrogenase" /protein_id="EJP72347.1" /translation="MYFSDNGRDWLGDNSPSCELNVVDIEGSFYGYPYKHAKNVIDPE FGHMIPDVEKDFIDPIAELGPHVAPLGIAFYDGQVFPEKYQNSVFVALHGSWNKYNGK SGYKVVLVELDKEGKYLNQEDFISGWLVNEDAWGRPAAPFVMSDGSLLISDDKYNVIY RVTYKG" gene complement(802621..803328) /locus_tag="NT01SARS_0847" CDS complement(802621..803328) /locus_tag="NT01SARS_0847" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00459" /codon_start=1 /transl_table=11 /product="inositol monophosphatase" /protein_id="EJP72348.1" /translation="MPELDLTKEINIAIKAALTSGKYLKKNKIELNKTASSDPRDTKL EADIASENLIKKIINESSNYEILAEESGESSGDLGSTFWVVDPLDGTANYNRDIPICC VSIGMVKNMKPLFGVIYDFNSDEIYCGDCINKVATLNNSPIQVSTVGDKKDGVLITGL PFNTDYSDTSLKNLINDMQSWKKTRMIGSAAMASCYIASGKAEVYREKGIYLWDILAG AAIVEAXXXXXXXVYMP" assembly_gap 802637..802656 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(803329..804372) /locus_tag="NT01SARS_0848" CDS complement(803329..804372) /locus_tag="NT01SARS_0848" /note="this gene contains a nucleotide ambiguity which may be the result of a sequencing error" /codon_start=1 /transl_table=11 /product="L-sorbosone dehydrogenase" /protein_id="EJP72349.1" /translation="MNFPPNFTIEVFSAVLDSPWQITETADGHIIVGSKKGSEVVALV DEDLDGSFESKIIVANGLQNPAGVVFYQGDLYFAEMDTIWIIENIDSWLNSSSESLPE KTIYMNDLPSETWHGLKYIDFGPDGSLYIPVGVPCNICLEPQTKDPRFAAIHKYENGK LITVANGVRNSVGFDWHPVTKKLYFSDNGRDWLGDDSPACELNVVNEEGSFYGYPYKH AKDVIDPEFGDMIPSVDKEFVDPIAELGAHVAPLGIAFYDGKEFPEKYHNSVFIALHG SWNRTKKSGYKVILVKLDDNGNYLYQEDFITGWLSNETAWGRPAAPFVMSDGSLLVSD DKHNVIYKVQYKG" assembly_gap 804405..805262 /estimated_length=858 /gap_type="within scaffold" /linkage_evidence="unspecified" CONTIG join(AHBG01000001.1:1..9741,gap(885),AHBG01000002.1:1..236754, gap(634),AHBG01000003.1:1..39993,gap(20),AHBG01000004.1:1..1752, gap(20),AHBG01000005.1:1..25285,gap(20),AHBG01000006.1:1..27908, gap(20),AHBG01000007.1:1..3789,gap(20),AHBG01000008.1:1..1923, gap(20),AHBG01000009.1:1..79958,gap(20),AHBG01000010.1:1..2224, gap(50),AHBG01000011.1:1..1908,gap(50),AHBG01000012.1:1..120831, gap(20),AHBG01000013.1:1..1516,gap(20),AHBG01000014.1:1..6896, gap(20),AHBG01000015.1:1..100001,gap(20),AHBG01000016.1:1..2570, gap(20),AHBG01000017.1:1..44200,gap(20),AHBG01000018.1:1..1700, gap(20),AHBG01000019.1:1..3151,gap(20),AHBG01000020.1:1..27011, gap(20),AHBG01000021.1:1..56557,gap(1571),AHBG01000022.1:1..3458, gap(20),AHBG01000023.1:1..1748,gap(858),AHBG01000024.1:1..1331) //