LOCUS JH001575 341591 bp DNA linear CON 25-JUL-2016 DEFINITION Cricetulus griseus cell line CHO-K1 unplaced genomic scaffold scaffold824, whole genome shotgun sequence. ACCESSION JH001575 AFTD01000000 VERSION JH001575.1 DBLINK BioProject: PRJNA69991 BioSample: SAMN02981352 KEYWORDS WGS. SOURCE Cricetulus griseus (Chinese hamster) ORGANISM Cricetulus griseus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus. REFERENCE 1 (bases 1 to 341591) AUTHORS Xu,X., Nagarajan,H., Lewis,N.E., Pan,S., Cai,Z., Liu,X., Chen,W., Xie,M., Wang,W., Hammond,S., Andersen,M.R., Neff,N., Passarelli,B., Koh,W., Fan,C.H., Wang,J., Gui,Y., Lee,K.H., Betenbaugh,M.J., Quake,S.R., Famili,I., Palsson,B.O. and Wang,J. TITLE The genomic sequence of the Chinese hamster ovary CHO-K1 cell line JOURNAL Unpublished REFERENCE 2 (bases 1 to 341591) AUTHORS Xu,X., Nagarajan,H., Lewis,N.E., Pan,S., Cai,Z., Liu,X., Chen,W., Xie,M., Wang,W., Hammond,S., Andersen,M.R., Neff,N., Passarelli,B., Koh,W., Fan,C.H., Wang,J., Gui,Y., Lee,K.H., Betenbaugh,M.J., Quake,S.R., Famili,I., Palsson,B.O. and Wang,J. TITLE Direct Submission JOURNAL Submitted (02-AUG-2011) Beijing Genomics Institute in Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, China COMMENT Source of DNA is available from ATCC Catalog No. CCL-61. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.05 Assembly Name :: CriGri_1.0 Genome Coverage :: 130x Sequencing Technology :: Illumina GA IIx ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..341591 /organism="Cricetulus griseus" /mol_type="genomic DNA" /submitter_seqid="scaffold824" /db_xref="taxon:10029" /chromosome="Unknown" /cell_line="CHO-K1" assembly_gap 4818..4838 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 10669..17478 /locus_tag="I79_020094" mRNA join(10669..10735,12493..12623,12711..12921,13011..13081, 13176..13263,14926..15105,15217..15338,15429..15591, 15676..15794,15865..16006,16156..16277,16380..16521, 16614..16709,16856..17003,17268..17478) /locus_tag="I79_020094" /product="Cell surface glycoprotein MUC18" CDS join(10669..10735,12493..12623,12711..12921,13011..13081, 13176..13263,14926..15105,15217..15338,15429..15591, 15676..15794,15865..16006,16156..16277,16380..16521, 16614..16709,16856..17003,17268..17478) /locus_tag="I79_020094" /codon_start=1 /product="Cell surface glycoprotein MUC18" /protein_id="EGV99097.1" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013106" /db_xref="InterPro:IPR013151" /db_xref="InterPro:IPR013162" /db_xref="UniProtKB/Swiss-Prot:Q8R2Y2" /db_xref="UniProtKB/TrEMBL:B2R642" /translation="MGLPRLVCAFLFAACCCCRRATGVPGEEKQPAPTPDLVEAEVGR TALLKCGPSHSSGNFSHVDWFLIHKERQIPIFRVRQGQGQNEPGEYEHRLKLHEGSGD TLALSQVTPHDERMFLCKSKRPRLQDHYIKLQVYKAPEEPTIQANAVGIHVDRQELRE VATCVGRNGYPIPQVIWYKNGRPLQEEENRVHIQSSQIVESSGLYTLQSVLNAQLVKE DKDAQFYCELSYRLPSGNRMKESREVTVPVFYPAEKVWVEVEPSGLLKEGDHVKIRCL TDGNPQPHFTINKQNSSTGEMEEETTDENGILFLEPAQKQHSGLYQCQSLDLETMTTL SSDPQELLVNYVSDVQVNPTAPEAQEGDSLTLTCEAESNQDLEFKWLRDKTGQLLGKG PVLQLNNLKREAGGRYLCMASVPNVPELNRTQPVSVGIFGSPWMALKERKVWVQENAM LNLSCEASGHPQPTISWNVNGSATAWNPDPQTVVSTLNVLVTPELLETGAECTATNSL GSNSTIIILKLVTLTTLTPDFSQTTGLSTSTASSHTRANSTSTEKKLPQPDSKGVVIV AVIVCILVLAVLGATLYFFYKKGKLPCGRSGKQEITMPPTRKSDFVVEVKSDKLPEEM ALLQGSSGDKRAPGDQVGGSSRGQGLTPPRFSGTGGSGLMVLVPEN" gene 19914..20072 /locus_tag="I79_020095" mRNA 19914..20072 /locus_tag="I79_020095" /product="hypothetical protein" CDS 19914..20072 /locus_tag="I79_020095" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99098.1" /translation="MLLFFNEASWQTKKTIGTYVPPLQSDILVPKTPGLKIFKVEELR LWYFHIKS" gene complement(27684..146251) /locus_tag="I79_020097" mRNA complement(join(27684..27973,29058..29240,30016..30113, 32536..32630,37927..38130,43643..43799,46463..46609, 70200..70447,106759..106965,107052..107248,107384..107588, 107773..107909,108004..108193,108432..108643, 108953..109026,109163..109193,111537..111811, 112240..112491,113633..113719,114658..115253, 119754..120575,121335..121954,122445..122533, 133376..133576,133762..133880,133977..134135, 136807..136907,136975..137164,137396..137494, 138322..138464,138653..138767,138879..139002, 140415..140560,140793..140843,140936..141068, 141180..141297,145930..146251)) /locus_tag="I79_020097" /product="NLR family member X1" CDS complement(join(27684..27973,29058..29240,30016..30113, 32536..32630,37927..38130,43643..43799,46463..46609, 70200..70447,106759..106965,107052..107248,107384..107588, 107773..107909,108004..108193,108432..108643, 108953..109026,109163..109193,111537..111811, 112240..112491,113633..113719,114658..115253, 119754..120575,121335..121954,122445..122533, 133376..133576,133762..133880,133977..134135, 136807..136907,136975..137164,137396..137494, 138322..138464,138653..138767,138879..139002, 140415..140560,140793..140843,140936..141068, 141180..141297,145930..146251)) /locus_tag="I79_020097" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_process: GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]" /codon_start=1 /product="NLR family member X1" /protein_id="EGV99100.1" /db_xref="InterPro:IPR000449" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR003153" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003590" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR007111" /db_xref="InterPro:IPR013525" /db_xref="InterPro:IPR014741" /db_xref="InterPro:IPR015940" /db_xref="UniProtKB/Swiss-Prot:Q3TL44" /db_xref="UniProtKB/TrEMBL:A7MB19" /translation="MGKLWRLEQELEGLPGAKQALFLQAGCVMAEKALEAVGCGLGPG AVAMAVALEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSVREGP CWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGR PRDLRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGL MSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAH GGRTVICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPA DFIIEVASGEYGDLNPMLFRAVQNGLCTMAEKKSSPEKNEVPAHCPTCPPEMDPIESH TFATSTLTQFCILFRRTFLSILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKVFN NTGFLFFSMLFLMFAALMPTVLTCELISLAVPLEMAVFMREHLNYWYSLKAYYLAKTM ADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALSIATALVAQSLGLLIGAASNSL QVATFVGPVTAIPVLLFSGFFVSFKTIPAYLQWSSYLSYVRYGFEGLILTIYGMERGH LTCLDVQCPFRDPQIILRELDVEEAKLYMDFLVLGVFFLALRLLAYLVLRAFIRHHGN SADSVPPPGRHGQLFRSISAAEAIQRHRRNLTEWFSRLPREERQFGPTFALDTVHVDP VIRESTPDELLRPSTELATGHQRTHAGLPPLALSQLFDPDACGRRVQTVVLYGTVGTG KSTLVRKMVLDWCYGRLPAFELLIPFSCEDLSSLGSTPASLCQLVTQRYTPLKEVLPL MTAAGSRLLFVLHGLERLNLDFRLAGTGLCNDPAEPGAPAAIMVNLLRKYMLPEASIL VTTRPSAIGRIPSKYVGRYGEICGFSDTNLQKLYFQLRLNQPDCGYGAGGAGVSATPA QRDNLIQMLSRNLEGHHQIAAACFLPSYCWLVCATLHFLHAPTPAGQTLTSIYTSFLR LNFSGETLDSTHPSNLSLMAYAARTMGKLAYEGVSSRKTYFSEEDVRGCLEAGIKTEE EFQLLQIFRRDALRFFLAPCVEPGHLGTFVFTVPAMQEYLAALYIVLGLRKTALQRVG KEVVELVGRVGEDVSLVLGIVAKLLPLRILPLLFNLLKVVPRVFGRMVSKSREAVAQA MVLEMFREEDYYNDDVLDQMGASILGVEGPKRHPDEPPEDEVFELFPMFMGGLLSAHN RAVLAQLGCPIKNLDALENAQAIKKKLGKMGRQVLPPSELLDHLFFHYEFQNQRFSAE VLGSLRQLNLAGVRMTPLKCTVVAAVLGSGKHPLDEVNLASCQLDPAGLHTLMPVFLR ARKLGLQLNSLGPEACRDLRDLLLHNQCQITTLRLSNNPLTAAGVALLMEGLAGNTSL THLSLLHTDLGDKGLELLATQLDRNKQLQELNVAYNGAGDAAALALAKAARDHPSLEL LHLYFNELSSEGRQVLRDLGGSGEGGARVVASLTEGAAVSEYWSVILSEIQRNLNSWD PARVQSHLKLLLRDLEDSRGATLNPWRKAQLLRVETDLRDTAALTLKFKFNPRLGIDN PVLSLAEDQDQSDPWNLRRPRFCLLSKEEEKSFGFHLQQQLGKADHVVCRVDPGSSAQ RHGLREGDRILAVNNKNVEHEDYAMVVRCIRASGPRVLLTVLAQHAHDVVRAQQGSDV FCCPALGPEVRPRLCHIVKDEGGFGFSITHGNRGPFWLVLSSGGAAERAGVPPGARLL EVNGVCVEKFTSNQLSRKLSQSGDQVTLLVAGPEVEEQCHQLGMPLAAPLAEGWALPA KPRCLNIEKGPQGFGFLLREEKGLNGRLGQFLWDVDPGLPADKAGMKAGDRLVAVAGE SVDGLGHEETVSRIRAQGSCVSLIVVDPEADCFFSMVRLSPLLFLENTEIADSPLAET KDHLVEDAAEPSDTVGSRQCFLYPGAGGGYGFRLCFVASGPCLFISQVVRLCQNPKLA LKNSPPYILDLLPDTYQHLRTVLSRYEGKMETLGENEYFRVFMENLMKKTKQTISLFK EGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFRITKADAAEFWRK AFGEKTIVPWKSFRQALHEVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQE SEGQGCPFCRCEIKGTEPIVVDPFDPRGSGSLLRQGAEGAPSPNYDDDDDERADDSLF MMKELAGAKNMNSSPIAGPENEHPKIKPSSSANAIYSLAARACDCDQQIDSCTYEAMY NIQSQALSVTENSTFGEGNLATAPTSTGPEESENEDDGYDVPKPPVPAVLARRTLSDI SNASSSFGWLSLDGDPTTNFNEGSQVPERPPKPFPRRINSERKASSCQQGGATANPSA TAPSPQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFVSISSPAHVAT" assembly_gap 71266..71299 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 91070..91607 /estimated_length=538 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 100967..105089 /locus_tag="I79_020096" mRNA join(100967..100973,101221..101340,101796..101863, 104961..105089) /locus_tag="I79_020096" /product="Coiled-coil domain-containing protein 153" CDS join(100967..100973,101221..101340,101796..101863, 104961..105089) /locus_tag="I79_020096" /codon_start=1 /product="Coiled-coil domain-containing protein 153" /protein_id="EGV99099.1" /db_xref="UniProtKB/Swiss-Prot:P0C7Q1" /translation="MIALQRDETRRAKASEERLKQRLQGLEAELEKAQSERDAVYAEM SRQRRALQEELRTRSKQLEEEGSLDCLLAKLRAAKPQWDAAVLRLHTRHKEQLRQFAL NPLEL" assembly_gap 118257..118266 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(156490..162184) /locus_tag="I79_020098" mRNA complement(join(156490..156901,158043..158167, 158244..158382,158467..158587,158672..158749, 159207..159359,159533..159644,159967..160196, 162013..162184)) /locus_tag="I79_020098" /product="Histone H4 transcription factor" CDS complement(join(156490..156901,158043..158167, 158244..158382,158467..158587,158672..158749, 159207..159359,159533..159644,159967..160196, 162013..162184)) /locus_tag="I79_020098" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Histone H4 transcription factor" /protein_id="EGV99101.1" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR015880" /db_xref="UniProtKB/Swiss-Prot:Q8K1K9" /db_xref="UniProtKB/TrEMBL:Q4FK13" /translation="MSPPGKAPRKENLGLQCEWGSCSSVCSAMEEFFEHVTQHLQHHM HGSKEDEEEEDPLEEEFSCLWQECGFCSLDSPIDLIRHVYFHCYHTKLKQWGLQALQS QADLSPCILDFQSRNVIPDIPDHFLCLWEHCESTFDNPEWFYRHVDAHSLCCEYQAVS KDNHVVLCGWKGCTCTFKDRCKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQ TSLDQQRFQCSHCSKRFATERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHS EDRPFKCDCCDYSCKNLIDLRKHLDTHSKESAYRCDFENCSFSARSLSSIKSHHRKVH EGDSEPRYKCHVCDKCFTRGNNLTVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVR YESVELTQQLLQQLQEGSDPGVALNEGSLQGIVLETVLGGPGPEEEMEEEDRVEGTAI SASQDNPSSAIHMVNQTVSQGQREMVYYVLSEAPGEPPPVSELSSREMEKLQGMPEKP EIQMV" gene complement(169904..173000) /locus_tag="I79_020099" mRNA complement(join(169904..170115,172470..172755, 172842..173000)) /locus_tag="I79_020099" /product="C2 domain-containing protein 2-like" CDS complement(join(169904..170115,172470..172755, 172842..173000)) /locus_tag="I79_020099" /codon_start=1 /product="C2 domain-containing protein 2-like" /protein_id="EGV99102.1" /db_xref="UniProtKB/Swiss-Prot:Q80X80" /db_xref="UniProtKB/TrEMBL:Q80U48" /translation="MYPLHPPAGESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRS TLIISGVSKVPIAQDELALSLGYAASLEASMQDDTGTSGGPSSPPSDPSATSPGPPDA LSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFLRSGTKLIF RRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPNPQL " gene complement(173076..179191) /locus_tag="I79_020100" mRNA complement(join(173076..173215,174081..174255, 174347..174474,174564..174628,175460..175568, 175673..175784,175877..175993,176073..176183, 176357..176476,176822..176917,178838..179191)) /locus_tag="I79_020100" /product="C2 domain-containing protein 2-like" CDS complement(join(173076..173215,174081..174255, 174347..174474,174564..174628,175460..175568, 175673..175784,175877..175993,176073..176183, 176357..176476,176822..176917,178838..179191)) /locus_tag="I79_020100" /codon_start=1 /product="C2 domain-containing protein 2-like" /protein_id="EGV99103.1" /db_xref="InterPro:IPR008973" /db_xref="UniProtKB/Swiss-Prot:Q80X80" /db_xref="UniProtKB/TrEMBL:Q3U590" /translation="MDPGWGQRDVGWAALLVLFAASLVTVLGWLLQYARGLWVSRAGG GQDSRPTSASEPGGSLRELGVWRSLLRLRATRTGASEEAGVRGLLASLFAFKSFRENW QRAWVRALNEQACRDGSSIQITFEEVPQLPPRASISHVTCKDQSERTMVLHCQLSAEE VCFPVSVTQQSPAAVSMETYHVTLTLPPTQLEVSLEEIPDEGLLVSWAFTDRPELSLM VLPKLQTRERDEEPTELSTVEELIKDAIVSTQPAMMVNLRACSAPGGLVPSEKPPMTS QAQPPIPRPTRLFLRQLRASHLGSELGGTEELCCAAELDNPMQQKWTKPMRAGPEVEW TEDLALDLGPQSRELTLKVLRSSSCGDAELLGQATLPVGSPSKPLSRRQVCPLTPGPG KSLSPAATMTAELHYEQGSPRNLGTPTSSTPRPSITPTKKIELDRTIMPDGTIVTTVT TVQSRPRIDGKLDSPSRSPSKVEVTEKMTTVLSESSGPSNASHSSSREWGKGMSIGGP " gene 186314..191857 /locus_tag="I79_020101" mRNA join(186314..186474,186822..186942,187227..187440, 188555..188701,189973..190057,190815..191003, 191302..191389,191551..191706,191792..191857) /locus_tag="I79_020101" /product="UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" CDS join(186314..186474,186822..186942,187227..187440, 188555..188701,189973..190057,190815..191003, 191302..191389,191551..191706,191792..191857) /locus_tag="I79_020101" /codon_start=1 /product="UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" /protein_id="EGV99104.1" /db_xref="InterPro:IPR018481" /db_xref="UniProtKB/Swiss-Prot:P24140" /db_xref="UniProtKB/TrEMBL:Q6P4Z8" /translation="MWAFPELPLPLLVNLFGSLLGFVATVTLIPAFRSHFIAARLCGQ DLNKLSRQQIPESQGVICGAVFLIILFCFIPFPFLNCFVEEQCKAFPHHEFVALIGAL LAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRWILG LHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVFNLVELEGDYR DDHVFSLYFMIPFFFTTLGLLYHNWYPSQVFVGDTFCYFAGMTFAVVGILGHFSKTML LFFIPQVFNFLYSLPQLLHAIPCPRHRIPRLNPKTGKLEMSYSKFKTKNLSFLGTFIL KVAERLQLVTVHRGESEDGAFTECNNMTLINLLLKIFGPIHERNLTLLLLLLQILSSA VTFSIRYQLVRLFYDV" gene 193516..193947 /locus_tag="I79_020102" mRNA 193516..193947 /locus_tag="I79_020102" /product="Histone H2A.x" CDS 193516..193947 /locus_tag="I79_020102" /note="GO_component: GO:0000786 - nucleosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]" /codon_start=1 /product="Histone H2A.x" /protein_id="EGV99105.1" /db_xref="InterPro:IPR002119" /db_xref="InterPro:IPR007125" /db_xref="InterPro:IPR009072" /db_xref="UniProtKB/Swiss-Prot:P16104" /db_xref="UniProtKB/TrEMBL:Q17QG8" /translation="MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERV GAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVT IAQGGVLPNIQAVLLPKKTSATVGPKAPASGKKATQASQEY" gene complement(194135..194446) /locus_tag="I79_020103" mRNA complement(194135..194446) /locus_tag="I79_020103" /product="hypothetical protein" CDS complement(194135..194446) /locus_tag="I79_020103" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99106.1" /translation="MNEDGVNWYEANEGENTGPNNMIHFSSPKPGNQVTSGRSRRGLK HQAEERTPGLQLQSNSPSGPPQPYVTAKGRHFWKVSQPLRAAHRDGDRRSSAMDKYRG A" gene complement(195415..203780) /locus_tag="I79_020104" mRNA complement(join(195415..195588,195669..195755, 195868..195921,196135..196254,196459..196497, 196699..196812,197866..197941,198034..198111, 198947..199024,199343..199398,199489..199538, 199898..199970,203503..203585,203666..203780)) /locus_tag="I79_020104" /product="Porphobilinogen deaminase" CDS complement(join(195415..195588,195669..195755, 195868..195921,196135..196254,196459..196497, 196699..196812,197866..197941,198034..198111, 198947..199024,199343..199398,199489..199538, 199898..199970,203503..203585,203666..203780)) /locus_tag="I79_020104" /note="GO_function: GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]" /codon_start=1 /product="Porphobilinogen deaminase" /protein_id="EGV99107.1" /db_xref="InterPro:IPR000860" /db_xref="UniProtKB/Swiss-Prot:P19356" /db_xref="UniProtKB/TrEMBL:Q5M893" /translation="MGKVNARDEAGYVAILIPAQRKVPPLRGRAADVTQSSADFRAQQ RQGRACALSGVMSGNGSAAATALARIQTDTVVAMLKTLHPGMQFEIIAMSTTGDKILD TALSKIGEKSLFTKELEYALEKNEVDLVVHSLKDVPTILPPGFTIGAICKRENPCDAV VFHPKFIGKTLETLPEKSAVGTSSLRRVAQLQRKFPHLEFKSIRGNLNTRLRKLDELQ EFSAIILAVAGLQRMGWQNRVGQILHPEECMYAVGQGALAVEVRAKDQDILDLVSVLH DPETVLRCIAERAFLRHLEGGCSVPVAVHTMMSDGQLYLTGGVWSLDGSDSMQETMQT TIQVPVQHEDGPEDDPQLVGITARNIPRGAQLAAENLGISLASLLLNKGAKNILDVAR QLNDVH" gene complement(207857..222968) /locus_tag="I79_020105" mRNA complement(join(207857..208021,208449..208671, 213251..213422,213532..213734,213824..213963, 214458..214619,214710..214898,215015..215161, 215758..215944,216793..216944,217287..217536, 218763..219010,219880..220043,220975..221110, 221199..221299,222710..222968)) /locus_tag="I79_020105" /product="Vacuolar protein sorting-associated protein 11-like" CDS complement(join(207857..208021,208449..208671, 213251..213422,213532..213734,213824..213963, 214458..214619,214710..214898,215015..215161, 215758..215944,216793..216944,217287..217536, 218763..219010,219880..220043,220975..221110, 221199..221299,222710..222968)) /locus_tag="I79_020105" /note="GO_function: GO:0005488 - binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Vacuolar protein sorting-associated protein 11-like" /protein_id="EGV99108.1" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR011046" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR018957" /db_xref="UniProtKB/Swiss-Prot:Q91W86" /db_xref="UniProtKB/TrEMBL:Q5FWZ1" /translation="MAAYLQWRRFVFFEKELVKEPLGNDGAAPGAAPASGSTASKFLC LPPGITVCDSGRGSLVFGDILLVELSLSSTEAQRDSSGWNGICFQAYKLRVTHLYQLK QHNILASVGEDEEGINPLVKIWNLEKRDGGNPLCTRIFPAIPGTEPTVVSCLTVHENL NFMAIGFTDGSVTLNKGDITRDRHSKTQILHKGSYPVTGLAFRQAGKVTHLFVVTTEN VQSYIVSGKDYPRVELDTHGCGLRCSALSDPSQDLQFIVAGDECVYLYQPDERGPCFA FEGHKLITHWFRGYLVIVSRDRKVSPKSEFTNRDTQSSDKQILNIYDLCNKFIAYSAV FEDVVDVLAEWGSLYVLTRDGRAHALQEKDTQTKLEARPPGSHSWHKHLEVAMLFKKN LFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGRLEPSYVIRK FLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSESEVHF DVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALQYIGKLPFEQAE SNMKRYGKILMHHIPEQTTQLLKGLCTDYRPSPEGWGDREAPCFRANSEEFIPIFANN PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQAKEKLHAEAISLLKSGR FCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVIAVCERHGEQD PSLWEQALSYFARKEEDCKEYVAAVLKHIENKNLMPPLLVVQTLAHNSTATLSIIRDY LVQKLQKQSQQIAQDELRVRRYREETTRIRQEIQELKSSPKIFQKTKCSICNSALELP SVHFLCGHSFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKC SNDSFSVIADYFGRGVFNKLTLLTDPPTSRLTPSLEAGLQRDLLMHSRRGT" assembly_gap 209763..209881 /estimated_length=119 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 225971..226186 /locus_tag="I79_020106" mRNA 225971..226186 /locus_tag="I79_020106" /product="hypothetical protein" CDS 225971..226186 /locus_tag="I79_020106" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99109.1" /translation="MAVVRLSAGAHTPPRPPQRFPSTSPSAPELRPGTPELPAPSPAL LGHARFCNVLGAGKVRIAFTRALAGGR" gene 238258..249131 /locus_tag="I79_020107" mRNA join(238258..238348,238543..238636,238775..238853, 238978..239132,239250..239326,239968..240149, 240405..240520,241863..242055,242198..242332, 242446..242528,242652..242784,242949..243136, 243404..243542,244602..244662,244829..244908, 245283..245468,245597..245769,245871..245958, 246075..246197,246360..246493,246623..246707, 246867..247107,247213..247263,248773..248823, 249070..249131) /locus_tag="I79_020107" /product="Hypoxia up-regulated protein 1" CDS join(238258..238348,238543..238636,238775..238853, 238978..239132,239250..239326,239968..240149, 240405..240520,241863..242055,242198..242332, 242446..242528,242652..242784,242949..243136, 243404..243542,244602..244662,244829..244908, 245283..245468,245597..245769,245871..245958, 246075..246197,246360..246493,246623..246707, 246867..247107,247213..247263,248773..248823, 249070..249131) /locus_tag="I79_020107" /codon_start=1 /product="Hypoxia up-regulated protein 1" /protein_id="EGV99110.1" /db_xref="InterPro:IPR013126" /db_xref="UniProtKB/Swiss-Prot:Q60432" /db_xref="UniProtKB/TrEMBL:Q6P136" /translation="MAATVRRQRPRRLLCWTLVAILLADLLALSDTLAVMSVDLGSES MKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPKATLRYFQH LLGKQADNPHVALYRDRFPEHELNIDPQRQTVRFQISPQLQFSPEEVLGMVLNYSRSL AEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRR KDINSTAQNVMFYDMGSGSTVCTIVTYQTVKTKEAGMQPQLQIRGVGFDRTLGGLEME LRLREHLAKLFNEQRRGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLM DDVDFKAKVTRVEFEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATRVPKV QEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFT REVEEEPGVRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDL RVFGSQNLTTVKLKGVGESFKKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVED SPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPTEGSKDEPGEQGDLKE ETEAPVEDTSQPPPPEPKGDAAPEGEKPDEKESGGKSEAQKPEEKGQSGPEGVPPAPE EEKKQKPARKQKMVEEIGVELAVLDLPDLPEDELARSVKKLEDLTLRDLEKQEREKAA NSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKEKL AELKKLCQGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIPEMDQIFTEVEMTT LEKVINDTWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFTKP RPRPKDKNGTRTEPPLNATAGDQEEKVIPPAGQPEEAKPILEPDKEETTTEPTDSEPL ELGGPGAESEPKEQTAGQKRSSKNDEL" gene complement(254574..254891) /locus_tag="I79_020108" mRNA complement(254574..254891) /locus_tag="I79_020108" /product="hypothetical protein" CDS complement(254574..254891) /locus_tag="I79_020108" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99111.1" /translation="MPLGPYYPATLVRLRSRGGVGTAACHRGFPLVCEAAGAEGLGAR EPHVASGGPSLWWPWLGLSGPAGSADRHLPSTLCPQATWDTRLRAGNCRSWEQEQESG EPR" gene 255874..256997 /locus_tag="I79_020109" mRNA join(255874..256021,256720..256997) /locus_tag="I79_020109" /product="Glucose-6-phosphate translocase" CDS join(255874..256021,256720..256997) /locus_tag="I79_020109" /note="GO_process: GO:0055085 - transmembrane transport [Evidence IEA]" /codon_start=1 /product="Glucose-6-phosphate translocase" /protein_id="EGV99112.1" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR016196" /db_xref="UniProtKB/Swiss-Prot:O43826" /db_xref="UniProtKB/TrEMBL:Q5RF35" /translation="MAAQGYGYYRTVIFAAMFGGYSLYYFNRKTFSFVMPSLVEEIAL DKDDLGLITSSQSAAYAISKFVSGVLSDQMSARWLFSSGLLLVGLVNVVFSWSSTVPV FAALWFLNGLAQGLGWPPCGKILRKVSASTSLSGVAEGS" gene 257321..260036 /locus_tag="I79_020110" mRNA join(257321..257513,258010..258168,258373..258458, 258951..259064,259610..259748,259870..260036) /locus_tag="I79_020110" /product="Glucose-6-phosphate translocase" CDS join(257321..257513,258010..258168,258373..258458, 258951..259064,259610..259748,259870..260036) /locus_tag="I79_020110" /note="GO_process: GO:0055085 - transmembrane transport [Evidence IEA]" /codon_start=1 /product="Glucose-6-phosphate translocase" /protein_id="EGV99113.1" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR016196" /db_xref="UniProtKB/Swiss-Prot:O43826" /db_xref="UniProtKB/TrEMBL:Q6IRK4" /translation="MNLAGGLGPILATILAQSYSWRSTLALSGALCVAVSFLCLLLIH NEPADVGLRNLDPTPSKGKKDSSKEESTLQDLLLSPYLWVLSTGYLVVFGVKTCCTDW GQFFLIQERGQSALVGSSYMSALEVGGLVGSIAAGYLSDRAMAKAGLSVYGNPRHGLL LFMMAGMAASMFLFRVTVTSDSPKIWILVLGAVFGFSSYGPIALFGVIANESAPPNLC GTSHAIVGLMANVGGFLAGLPFSTIAKHYSWSTAFWVAEVICIASTLVFFLLRNIRTK MGRVPKKAE" gene complement(261373..264134) /locus_tag="I79_020112" mRNA complement(join(261373..261451,261679..261805, 262429..262532,263655..263829,263960..264134)) /locus_tag="I79_020112" /product="Trafficking protein particle complex subunit 4" CDS complement(join(261373..261451,261679..261805, 262429..262532,263655..263829,263960..264134)) /locus_tag="I79_020112" /note="GO_component: GO:0005801 - cis-Golgi network [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]" /codon_start=1 /product="Trafficking protein particle complex subunit 4" /protein_id="EGV99115.1" /db_xref="InterPro:IPR007233" /db_xref="InterPro:IPR011012" /db_xref="UniProtKB/Swiss-Prot:Q9ES56" /db_xref="UniProtKB/TrEMBL:Q544R8" /translation="MAIFSVYVVNKAGGLIYQWDSYSPRAEAEKTFSYPLDLLLKLHD ERVLVAFGQRDGIRVGHAVLAINGMDVNGKYTADGKEVLEYLGNSANYPVSIRFGRPR LTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLAD PRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPG S" gene 262297..262458 /locus_tag="I79_020111" mRNA 262297..262458 /locus_tag="I79_020111" /product="hypothetical protein" CDS 262297..262458 /locus_tag="I79_020111" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99114.1" /translation="MDVFVQMSLENLTPFLSLFTIAFSGQSLGPICPIYPYDLSVGTY LSVFGSSAV" gene <264831..266351 /locus_tag="I79_020113" mRNA join(<264831..264923,265592..265775,266257..266351) /locus_tag="I79_020113" /product="40S ribosomal protein S25" CDS join(<264831..264923,265592..265775,266257..266351) /locus_tag="I79_020113" /codon_start=1 /product="40S ribosomal protein S25" /protein_id="EGV99116.1" /db_xref="InterPro:IPR004977" /db_xref="UniProtKB/Swiss-Prot:Q6Q311" /db_xref="UniProtKB/TrEMBL:B5FX78" /translation="PKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNN LVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHR AQVIYTRNTKGGDAPAAGEDA" gene complement(266604..268308) /locus_tag="I79_020115" mRNA complement(join(266604..266664,266901..267033, 267324..267413,267646..267676,268117..268308)) /locus_tag="I79_020115" /product="Coiled-coil domain-containing protein 84" CDS complement(join(266604..266664,266901..267033, 267324..267413,267646..267676,268117..268308)) /locus_tag="I79_020115" /codon_start=1 /product="Coiled-coil domain-containing protein 84" /protein_id="EGV99118.1" /db_xref="UniProtKB/Swiss-Prot:Q4VA36" /db_xref="UniProtKB/TrEMBL:A9ULU4" /translation="MLENGDGSNLCHPHCSRTSSASLAPLSFSHVASSSQQVSHLDPQ RVPELDWMETGQHLTFIGHQDTPGVGNIHSGATPPWMIQEEEHSSGNLPIGPSYEEFL KEKEKQKLKKLPPERVGANFDHSSNTSAGWLPSFGRVWNNGRRWQSRHQFKTEAATRS KQSHKGKS" gene 267399..267686 /locus_tag="I79_020114" mRNA 267399..267686 /locus_tag="I79_020114" /product="hypothetical protein" CDS 267399..267686 /locus_tag="I79_020114" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99117.1" /translation="MEVWHLRQSKALYYGTCSSQECSKIKAGVFGWVLVVQAFNPSTQ EAETRKSRIVSHPQSWLQIETLSEQQAQNGLETQVRNLPEWILPTPGVSCG" gene complement(273076..273455) /locus_tag="I79_020116" mRNA complement(join(273076..273243,273336..273455)) /locus_tag="I79_020116" /product="Coiled-coil domain-containing protein 84" CDS complement(join(273076..273243,273336..273455)) /locus_tag="I79_020116" /codon_start=1 /product="Coiled-coil domain-containing protein 84" /protein_id="EGV99119.1" /db_xref="UniProtKB/Swiss-Prot:Q86UT8" /db_xref="UniProtKB/TrEMBL:Q0P5M5" /translation="MAPPQRCPLCRQTFFCGRGHVYSRKHQRQLKEALERLLPQVEAA RKAVRAAQVERYVPEHDRCCWCPCCGCEVRKHLSHGNLTVLHGGLLEHLAR" gene complement(291493..298763) /locus_tag="I79_020117" mRNA complement(join(291493..291542,291923..292161, 293732..293961,294166..294428,298703..298763)) /locus_tag="I79_020117" /product="Forkhead box protein R1" CDS complement(join(291493..291542,291923..292161, 293732..293961,294166..294428,298703..298763)) /locus_tag="I79_020117" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003700 - transcription factor activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="Forkhead box protein R1" /protein_id="EGV99120.1" /db_xref="InterPro:IPR001766" /db_xref="UniProtKB/Swiss-Prot:Q6PIV2" /db_xref="UniProtKB/TrEMBL:A7MBX0" /translation="MGNECFLSFTTSYLPLSTQKRPDIKPNLWMWVSPNIVYPPGKLE VERPKKDPLSVLPSRDAAVKEEEASCSEGSEAQARLPSSSQPSRPCKRKTKQKHIASS PSTWEELTEEEEAKDQDDSSSVALPSLPTRAPLQRRRRLQQAISPEGKHWSRPPLNYF QLIALALRNSPPCGLNVQEIYSFTRKHFPFFRTAPEGWKNTVRHNLCFRDSFEKVPVS MQGEASARPRSCLWKLTEEGQHRFAEEARTLASTQLESIQQCMSQPDVMPFLFDLRED PAMP" assembly_gap 296789..296905 /estimated_length=117 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(309310..310960) /locus_tag="I79_020118" mRNA complement(join(309310..309446,309787..309857, 310084..310222,310345..310476,310891..310960)) /locus_tag="I79_020118" /product="Uroplakin-2" CDS complement(join(309310..309446,309787..309857, 310084..310222,310345..310476,310891..310960)) /locus_tag="I79_020118" /note="GO_component: GO:0030176 - integral to endoplasmic reticulum membrane [Evidence IEA]; GO_process: GO:0016044 - membrane organization [Evidence IEA]" /codon_start=1 /product="Uroplakin-2" /protein_id="EGV99121.1" /db_xref="InterPro:IPR009952" /db_xref="UniProtKB/Swiss-Prot:P38575" /db_xref="UniProtKB/TrEMBL:Q3SXK0" /translation="MTPTLPVQTLPLILLAVLAPGAADFNISSLSGLLSPALTESLLV ALPPCHLTGGNATLMVRRANDSKVVKSVFMVPPCRGRRELVSVVDSGAGFTVTRLSAY QVTNLTPGTKYYISYRVQKGTSTESSPETPMSTLPRRNMESIGLGMARTGGMVVITVL LSVAMFLLVVGLIVALALGARK" CONTIG join(AFTD01042375.1:1..4817,gap(21),AFTD01042376.1:1..66427, gap(34),AFTD01042377.1:1..19770,gap(538),AFTD01042378.1:1..26649, gap(10),AFTD01042379.1:1..91496,gap(119),AFTD01042380.1:1..86907, gap(117),AFTD01042381.1:1..44686) //