LOCUS JH000926 694169 bp DNA linear CON 14-MAR-2015 DEFINITION Cricetulus griseus cell line CHO-K1 unplaced genomic scaffold scaffold2548, whole genome shotgun sequence. ACCESSION JH000926 AFTD01000000 VERSION JH000926.1 DBLINK BioProject: PRJNA69991 BioSample: SAMN02981352 KEYWORDS WGS. SOURCE Cricetulus griseus (Chinese hamster) ORGANISM Cricetulus griseus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus. REFERENCE 1 (bases 1 to 694169) AUTHORS Xu,X., Nagarajan,H., Lewis,N.E., Pan,S., Cai,Z., Liu,X., Chen,W., Xie,M., Wang,W., Hammond,S., Andersen,M.R., Neff,N., Passarelli,B., Koh,W., Fan,C.H., Wang,J., Gui,Y., Lee,K.H., Betenbaugh,M.J., Quake,S.R., Famili,I., Palsson,B.O. and Wang,J. TITLE The genomic sequence of the Chinese hamster ovary CHO-K1 cell line JOURNAL Unpublished REFERENCE 2 (bases 1 to 694169) AUTHORS Xu,X., Nagarajan,H., Lewis,N.E., Pan,S., Cai,Z., Liu,X., Chen,W., Xie,M., Wang,W., Hammond,S., Andersen,M.R., Neff,N., Passarelli,B., Koh,W., Fan,C.H., Wang,J., Gui,Y., Lee,K.H., Betenbaugh,M.J., Quake,S.R., Famili,I., Palsson,B.O. and Wang,J. TITLE Direct Submission JOURNAL Submitted (02-AUG-2011) Beijing Genomics Institute in Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, China COMMENT Source of DNA is available from ATCC Catalog No. CCL-61. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.05 Assembly Name :: CriGri_1.0 Genome Coverage :: 130x Sequencing Technology :: Illumina GA IIx ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..694169 /organism="Cricetulus griseus" /mol_type="genomic DNA" /submitter_seqid="scaffold2548" /db_xref="taxon:10029" /chromosome="Unknown" /cell_line="CHO-K1" assembly_gap 860..870 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3933..4108 /estimated_length=176 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5126..5267 /estimated_length=142 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5468..6109 /estimated_length=642 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7361..8767 /estimated_length=1407 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 9048..10209 /estimated_length=1162 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 13747..13771 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 14397..14471 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 18660..18688 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 19949..20083 /estimated_length=135 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 24596..24611 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 27552..27740 /estimated_length=189 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 28466..28515 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 28716..29071 /estimated_length=356 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 29319..29328 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(29480..45202) /locus_tag="I79_016103" mRNA complement(join(29480..29546,29636..29746,30184..30265, 30389..30459,30587..30719,30810..30943,33723..33892, 33985..34042,38194..38258,38905..39039,39139..39291, 39379..39541,39692..39805,39898..40010,43442..43541, 44976..45202)) /locus_tag="I79_016103" /product="Serine/threonine-protein phosphatase 6 regulatory subunit 1" CDS complement(join(29480..29546,29636..29746,30184..30265, 30389..30459,30587..30719,30810..30943,33723..33892, 33985..34042,38194..38258,38905..39039,39139..39291, 39379..39541,39692..39805,39898..40010,43442..43541, 44976..45202)) /locus_tag="I79_016103" /codon_start=1 /product="Serine/threonine-protein phosphatase 6 regulatory subunit 1" /protein_id="EGW07495.1" /db_xref="InterPro:IPR007587" /db_xref="UniProtKB/Swiss-Prot:Q9UPN7" /db_xref="UniProtKB/TrEMBL:B2RUA5" /translation="MFWKFDLHTSSHLDTLLEKEDLSLPELLDEEDVLQECKVVNRKL LDFLLQPSHLQAMVAWVTQEPPASGEERLRYNLLCLNHSSTLSTSVTTQAPSFLTHTA SLSCFYLQHSNASQSLCDLIRLSREQMIQGQDGPEPDQLLATLEKQETIEQLLSNMFE GELCQSVIVSGIQVLLTLLEPRRPRSDSVAMNNFFSSVDGQLELLAQGALDNAISSMG ALHALRPRLARFHQLLLEPPKLEPLQMTWGNLAPPLGNTRLHGVKLLASALSTNAAAL TQELLVLDVPNTLLDLFFHYVFNNFLHAQVEVCVSAMLSSGPPPDSSSETPNPNPILK HLLQHCRLVERILTSWEENDHVHAPFDKTANITFSLNADDDNPNANLLEICYKDRIQQ FDDEEEEEEGQGSAESDGEYGAWQGSQPARASHAGQPPGVRSGGSTDSEDDEDEEEEE EEDEGAAQAACGRASPPSFPSLGPQPPAPSWTATFEPVPTDAPTGPSVSKKTDMSSTQ IQTSSPAHRAPQLRSQDPIPPSAPQEVSDSSKVAEPLAPCQALVSVADVQATLHGMCS DPSSLDSATRDPSTSVPAFEAQKSPQTVEGEKNPEPLGLPQSQSAQALETPNGSTPGG PLSQGSQ" assembly_gap 35397..35415 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 36588..38118 /estimated_length=1531 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 40541..41049 /estimated_length=509 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 46163..46779 /estimated_length=617 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 54839..56522 /estimated_length=1684 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 57220..57480 /estimated_length=261 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 57655..57917 /estimated_length=263 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 60427..60603 /estimated_length=177 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 60988..61448 /estimated_length=461 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 66004..66013 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 69078..69205 /estimated_length=128 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 70651..72389 /estimated_length=1739 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 73174..103433 /locus_tag="I79_016104" mRNA join(73174..73226,86338..86478,87972..88088,88195..88228, 88313..88381,94998..95144,95558..95589,96189..96359, 98955..99078,99732..99930,100592..100681,103378..103433) /locus_tag="I79_016104" /product="BR serine/threonine-protein kinase 1" CDS join(73174..73226,86338..86478,87972..88088,88195..88228, 88313..88381,94998..95144,95558..95589,96189..96359, 98955..99078,99732..99930,100592..100681,103378..103433) /locus_tag="I79_016104" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0006468 - protein amino acid phosphorylation [Evidence IEA]" /codon_start=1 /product="BR serine/threonine-protein kinase 1" /protein_id="EGW07496.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:Q5RJI5" /db_xref="UniProtKB/TrEMBL:B2DD29" /translation="MSPVTWWGARRAVLLWYRYLVLEHVSGGELFDYLVKKGRLTPKE ARKFFRQIVSALDFCHSYSICHRDLKPENLLLDEKNNIRIADFFLESLQVGDSLLETS CGSPHYACPEVIKGEKYDGRRADMWSCGVILFALLVGALPFDDDNLRQLLEKVKRGVF HMPHFIPPDCQSLLRGMIEVEPEKRLSLEQIQKHPWYLGGKHEPDPCLEPAQAPRVAM RSLPSNGELDPDVLESMASLGCFRDRERLHRELRSEELAKRSWFGNFISLDKEEQIFL VLKDKPLSSIKADIVHAFLSIPSLSHSVLSQTSFRAEYKASGGPSEIQKPVRFQVDIS SSEGPEPSPRRDGSSGGGIFSVTFALISGPSRRFKRVVETIQAQLLSTHDQPSVQALA APPFTCDHTLQSQDLPWT" assembly_gap 73336..73451 /estimated_length=116 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 74999..75008 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 75446..75524 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 75723..75862 /estimated_length=140 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 76727..78168 /estimated_length=1442 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 82068..83905 /estimated_length=1838 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 84533..84643 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 89738..89773 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 91595..91629 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 95710..95890 /estimated_length=181 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 97023..97109 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 97338..97457 /estimated_length=120 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 98188..98355 /estimated_length=168 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 105789..107116 /estimated_length=1328 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(108144..108320) /locus_tag="I79_016105" mRNA complement(108144..108320) /locus_tag="I79_016105" /product="Transmembrane protein 150B" CDS complement(108144..108320) /locus_tag="I79_016105" /codon_start=1 /product="Transmembrane protein 150B" /protein_id="EGW07497.1" /db_xref="InterPro:IPR019402" /db_xref="UniProtKB/Swiss-Prot:Q8R218" /db_xref="UniProtKB/TrEMBL:B7ZW71" /translation="MAGAFLAFILGNLYFWLQFLLSWIKGLPQPGPRWVKLLRLSFCV ISTILIVASILPRE" assembly_gap 108774..108827 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 110419..112063 /estimated_length=1645 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 112497..112538 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 114750..115286 /estimated_length=537 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 120087..120113 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 126860..126870 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 127986..128033 /estimated_length=48 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 128279..128372 /estimated_length=94 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 128605..130880 /estimated_length=2276 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 131710..139573 /locus_tag="I79_016106" mRNA join(131710..131819,131969..132134,132784..132958, 135509..135674,139513..139573) /locus_tag="I79_016106" /product="Histone-lysine N-methyltransferase SUV420H2" CDS join(131710..131819,131969..132134,132784..132958, 135509..135674,139513..139573) /locus_tag="I79_016106" /codon_start=1 /product="Histone-lysine N-methyltransferase SUV420H2" /protein_id="EGW07498.1" /db_xref="UniProtKB/Swiss-Prot:Q6Q783" /db_xref="UniProtKB/TrEMBL:B1WB46" /translation="MGPDRVTARELCENDDLATSLVLDPYLGFRTHKMNVSPVPTLRR QHHLRSALEAFLRQQDLEATYRALTLGSWMAHYFQSRAPRQEAAFKTHPVSRKKNEKL ELLVGCIAELRQEDEHLLRAGENDFSIMYSTRKRSAQLWLGPAAFINHGWAIEWAWLQ FVPSDGNTACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECYTCERGPGIRLQTVSTQ QLQHQGI" assembly_gap 132266..132328 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 132518..132576 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 135682..136503 /estimated_length=822 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 137665..137885 /estimated_length=221 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 141417..141502 /estimated_length=86 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 142214..142401 /estimated_length=188 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 142796..142917 /estimated_length=122 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 143085..143893 /estimated_length=809 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 144894..145623 /estimated_length=730 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(146119..147174) /locus_tag="I79_016107" mRNA complement(146119..147174) /locus_tag="I79_016107" /product="Putative uncharacterized protein DKFZp434G1729" CDS complement(146119..147174) /locus_tag="I79_016107" /codon_start=1 /product="Putative uncharacterized protein DKFZp434G1729" /protein_id="EGW07499.1" /db_xref="UniProtKB/Swiss-Prot:Q8ND99" /db_xref="UniProtKB/TrEMBL:Q8C626" /translation="MPPKKEHLAPNTQSQKSDRRQKQISQKSVDSRAKAPGDASKLPA GDMPDRKPEGKQEPVLLVAGQKSKVVDVRAQAMTLTLPTTTTKKQSKEILISKTQEIT LETLKARGKVEDRGHKTKEETTVNLPNLKSKEIGMQKKWVTTHEMAVEAPPTEDKRAF SVEGLALAKMMIMANSTQDHLKSATISLPSWFSLTSRGSAMSTLPDLPFQSSQMILPD GGQVEVREQSTSQIKEKENTQPQVEETPEDLLRTSKRPTSELPKTVSDDAKVQESSQF AVPAAAADLKDEHQPLASLKSPKNKTESTVRVPQKQGLKKMRTQQQQAAAAAAAAAAR GCRRVKVRSSLSRRLGD" assembly_gap 147362..147378 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(147870..156968) /locus_tag="I79_016108" mRNA complement(join(147870..148096,148190..148245, 148344..148444,148592..148653,148856..148880, 156846..156968)) /locus_tag="I79_016108" /product="Protein FAM71E2" CDS complement(join(147870..148096,148190..148245, 148344..148444,148592..148653,148856..148880, 156846..156968)) /locus_tag="I79_016108" /codon_start=1 /product="Protein FAM71E2" /protein_id="EGW07500.1" /db_xref="InterPro:IPR020412" /db_xref="UniProtKB/Swiss-Prot:Q8N5Q1" /db_xref="UniProtKB/TrEMBL:Q8C626" /translation="MSYLRHVQWLXXXXXXXKTLEPELGALQARLDRLLRRLQLLDQA GSGLTEAAERTFPYKIFSSQKQKKTKAVKQRLKSQAVGDSIPLIWSHLQPAEPVELTE KKSYLSDACPNESKTLIHVSEKASITIRTIFSIISGTMNQEHSSTKASYSLEAGPWTP GSKGEGLGPGLQGPREEGWGLDSRSPREEGWGLDSGV" assembly_gap 150626..151838 /estimated_length=1213 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 153682..153761 /estimated_length=80 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 154232..154362 /estimated_length=131 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 156298..156311 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 156659..156727 /estimated_length=69 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 156918..156938 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 157109..159524 /estimated_length=2416 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 160444..160608 /estimated_length=165 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 164306..164335 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 166237..166471 /estimated_length=235 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 166692..166701 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(166820..166984) /locus_tag="I79_016109" mRNA complement(166820..166984) /locus_tag="I79_016109" /product="hypothetical protein" CDS complement(166820..166984) /locus_tag="I79_016109" /codon_start=1 /product="hypothetical protein" /protein_id="EGW07501.1" /translation="MCVPLIPQVILLQAHFIAASHKLPYPELPLVPFHKPDPPPLIIT TQHGHSALIP" gene 167053..177936 /locus_tag="I79_016110" mRNA join(167053..167064,176467..176590,177537..177655, 177847..177936) /locus_tag="I79_016110" /product="60S ribosomal protein L28" CDS join(167053..167064,176467..176590,177537..177655, 177847..177936) /locus_tag="I79_016110" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]" /codon_start=1 /product="60S ribosomal protein L28" /protein_id="EGW07502.1" /db_xref="InterPro:IPR002672" /db_xref="UniProtKB/Swiss-Prot:P41105" /db_xref="UniProtKB/TrEMBL:Q4QR16" /translation="MPEWEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRR SGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVV VKRKRTRPTKSS" assembly_gap 172880..173517 /estimated_length=638 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 173693..173730 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 174489..174704 /estimated_length=216 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 174876..174885 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 175177..175186 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 183068..183089 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 191088..191130 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 191336..194062 /estimated_length=2727 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 194236..196408 /estimated_length=2173 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 196796..197807 /estimated_length=1012 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 200510..201029 /estimated_length=520 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 202952..203268 /estimated_length=317 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 207694..207734 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 207968..208094 /estimated_length=127 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 210797..210900 /estimated_length=104 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 211486..212687 /estimated_length=1202 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 212993..213075 /estimated_length=83 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 213633..213791 /locus_tag="I79_016111" mRNA 213633..213791 /locus_tag="I79_016111" /product="hypothetical protein" CDS 213633..213791 /locus_tag="I79_016111" /codon_start=1 /product="hypothetical protein" /protein_id="EGW07503.1" /translation="MVTVDLKDSDITGSQGPWVMETLGLKPGSWEMKTPLAVMADWRR WHHGYRKS" assembly_gap 215399..215408 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 215509..215697 /locus_tag="I79_016112" mRNA 215509..215697 /locus_tag="I79_016112" /product="hypothetical protein" CDS 215509..215697 /locus_tag="I79_016112" /codon_start=1 /product="hypothetical protein" /protein_id="EGW07504.1" /translation="MGWDKAFRDVVTSRKRSLCGDVVAKWTQPLVTTSPAGLFLCGDL MGRRFSPCNDIMEHRHIC" assembly_gap 215871..216325 /estimated_length=455 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 216911..217431 /estimated_length=521 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 217653..218900 /estimated_length=1248 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 219311..219360 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 219635..219686 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 219847..221231 /estimated_length=1385 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 221452..221597 /estimated_length=146 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 223491..225489 /estimated_length=1999 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 226164..226218 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 226425..226440 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 231194..234379 /estimated_length=3186 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 236807..236977 /estimated_length=171 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(237549..239773) /locus_tag="I79_016113" mRNA complement(join(237549..237675,238862..238932, 239133..239342,239636..239773)) /locus_tag="I79_016113" /product="Isochorismatase domain-containing protein 2B, mitochondrial" CDS complement(join(237549..237675,238862..238932, 239133..239342,239636..239773)) /locus_tag="I79_016113" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="Isochorismatase domain-containing protein 2B, mitochondrial" /protein_id="EGW07505.1" /db_xref="InterPro:IPR000868" /db_xref="UniProtKB/Swiss-Prot:Q9DCC7" /db_xref="UniProtKB/TrEMBL:B2RY90" /translation="MAAARASLGRILPESCILFLCDMQEKLRGKVLYFPQIVSMAARM LKVARLLDVPVLLTEQYPQGLGPTVPELGAQGLQAMSKTCFSMVPPLQQELDKRPQLR SVLLCGLETQGCILHTALDLLDRGLQVHVAVDACSSRSELNRLVALDRMRQSGVFLST SEVLILQLVKDAAHPQFKEVK" assembly_gap 242148..242157 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 242354..242899 /estimated_length=546 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 245984..246780 /estimated_length=797 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 257380..257389 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 259369..260132 /estimated_length=764 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 263643..263738 /estimated_length=96 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 263908..263946 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 265786..269317 /locus_tag="I79_016114" mRNA join(265786..265923,266089..266187,269225..269317) /locus_tag="I79_016114" /product="Isochorismatase domain-containing protein 2A, mitochondrial" CDS join(265786..265923,266089..266187,269225..269317) /locus_tag="I79_016114" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="Isochorismatase domain-containing protein 2A, mitochondrial" /protein_id="EGW07506.1" /db_xref="InterPro:IPR000868" /db_xref="UniProtKB/Swiss-Prot:P85094" /db_xref="UniProtKB/TrEMBL:B2RY90" /translation="MAAARVSLGRILPESSILFLCDMQEKFRPSIAYFPQIVSVAARM LKVARLLDVPVLLTEQYPQGLGPTVPELGAQGIRPIQNIIKEPVPDSGLLGLFQGQNP LLLNSRP" assembly_gap 266254..267140 /estimated_length=887 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 269660..269812 /locus_tag="I79_016115" mRNA 269660..269812 /locus_tag="I79_016115" /product="hypothetical protein" CDS 269660..269812 /locus_tag="I79_016115" /codon_start=1 /product="hypothetical protein" /protein_id="EGW07507.1" /translation="MGVLLPSPKLGLDTGHTYSVQRVDLEEFFLAVPISDGTSARPCW IDSTAQ" assembly_gap 273175..273223 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 275569..307614 /locus_tag="I79_016116" mRNA join(275569..276019,300191..300385,300642..300755, 300976..301089,304937..304994,305065..305252, 306869..307614) /locus_tag="I79_016116" /product="Scavenger receptor cysteine-rich domain-containing protein LOC284297-like" CDS join(275569..276019,300191..300385,300642..300755, 300976..301089,304937..304994,305065..305252, 306869..307614) /locus_tag="I79_016116" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005044 - scavenger receptor activity [Evidence IEA]" /codon_start=1 /product="Scavenger receptor cysteine-rich domain-containing protein LOC284297-like" /protein_id="EGW07508.1" /db_xref="InterPro:IPR001190" /db_xref="InterPro:IPR017448" /db_xref="UniProtKB/Swiss-Prot:Q8BV57" /db_xref="UniProtKB/TrEMBL:B2RUB0" /translation="MTTVTAITAITIAVMTTMTAITTITIAVMTTMTAITAITIAVMT TVTAITAITIAVMTTVTAITAITIAVMTTVTAITAITIAVMTTVTAITAITIAVMTTM TANRCHHHRRHDNHHRHHRHHHRCHDKHQHHLTLTIITFLSPHHRHLDLACRVLGCGG ALAAPGGAFFGEGTGPVWLSELACRGSEGQLGICPHRGWKAHICSHEEDAGVVCVGQR AANSREDSTSLLDGDLWPPLSGELSPSSEEPPVTHTPQPAASSQNGSRKKNPRPPKQA KSTRAPVLTNGAPRQGSPQLRLVAGPSRCSGRLEGVLVGGPRGHPAPAAGRFGWGAGP IWLDDVGCVGTEASLSECPAAPWGKHNCAHNEDVGVTCTGTPGLDTISDPFSWTWLPG LGRDQDAWLPGELATKPSPSLPSRGLDKTTKSPGKTPKSTKKWVTKNAKRPTTQPPGI PTTKRSKVPGTPSTLNLTPHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMALGPGPSGWMTWAVRGVRPH" assembly_gap 279299..279766 /estimated_length=468 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 281732..282780 /estimated_length=1049 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 285120..285164 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 287078..288403 /estimated_length=1326 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 291041..291157 /estimated_length=117 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 291525..296410 /estimated_length=4886 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 297386..298002 /estimated_length=617 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 298594..298736 /estimated_length=143 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 298989..300137 /estimated_length=1149 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 301413..301706 /estimated_length=294 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 302146..302277 /estimated_length=132 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 302646..303008 /estimated_length=363 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 304999..305058 /estimated_length=60 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 305328..305337 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 306670..306723 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 307161..307548 /estimated_length=388 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 307977..308105 /estimated_length=129 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 309775..310008 /estimated_length=234 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 312080..312289 /estimated_length=210 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 312998..314522 /estimated_length=1525 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 319857..319927 /estimated_length=71 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 320176..320304 /estimated_length=129 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 321596..321615 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 323193..323219 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 323760..324036 /estimated_length=277 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 325896..326009 /estimated_length=114 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 326355..326420 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(326608..343597) /locus_tag="I79_016117" mRNA complement(join(326608..327192,328024..328226, 334427..334681,342839..342989,343553..343597)) /locus_tag="I79_016117" /product="Serine/threonine-protein kinase SBK2" CDS complement(join(326608..327192,328024..328226, 334427..334681,342839..342989,343553..343597)) /locus_tag="I79_016117" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0006468 - protein amino acid phosphorylation [Evidence IEA]" /codon_start=1 /product="Serine/threonine-protein kinase SBK2" /protein_id="EGW07509.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:B1WBU5" /db_xref="UniProtKB/TrEMBL:B0V305" /translation="MELRALETLEDGDTEEDTAMALQRLVELTASRVTSVRSLRVQYR LIRKLGSGSYGRVLLAQPRQGEMPGKQSDDGSMDVAAVEDGGDEGLGGLTVEELQQGQ ETALALEDMMALSAQTLVRTEVDELYEEVRPLGQGRFGRVLLVTHRQKGTPLALKQLP KTSTSLRSFLYEFCVGLSLGTHSAIVAAYGIGIESAGSYSFLTEPVLHGDLITFIQPK VGLPQPATQRCAAQLASALEHIHSHGLVYRDLKPENVLVCDPDCHRVKLTDFGHTRPR GTLLRLTGPFPYTAPELCAPPPFPEGLPIQPALDAWALGVLIFCLLTGHFPWDQPLVE ADPFFEDFIIWQASGQPQDRPQPWYGLSPVADALLWGLLDPQPRKRSPVSSIKGYLGQ PWRQRGGEAEELAKELKEDG" assembly_gap 327345..327410 /estimated_length=66 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 330198..330413 /estimated_length=216 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 337771..337838 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 338119..338912 /estimated_length=794 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 341561..341570 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 344536..344725 /estimated_length=190 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 350334..350365 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 353962..353994 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 357868..357877 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 362800..362809 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 364001..366627 /estimated_length=2627 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 366939..367115 /estimated_length=177 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 367305..367583 /estimated_length=279 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 369384..369752 /estimated_length=369 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 376546..378033 /estimated_length=1488 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(380844..381312) /locus_tag="I79_016118" mRNA complement(join(380844..380873,381001..381312)) /locus_tag="I79_016118" /product="Flt3-interacting zinc finger protein 1" CDS complement(join(380844..380873,381001..381312)) /locus_tag="I79_016118" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Flt3-interacting zinc finger protein 1" /protein_id="EGW07510.1" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR015880" /db_xref="UniProtKB/Swiss-Prot:Q9WTJ4" /db_xref="UniProtKB/TrEMBL:Q3TRV0" /translation="MDESSLPVVPAPIVAPGPAPSATTPRVPFHCSECGKSFRYRSDL RRHFARHTALKPHACPRCGKGFKHSFNLANHLRSHTGERPYRCSACPKGFRDSTGLLH HQHELQGRPAE" assembly_gap 381922..382117 /estimated_length=196 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 382273..384379 /estimated_length=2107 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 386402..386479 /estimated_length=78 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 386583..387503 /locus_tag="I79_016119" mRNA 386583..387503 /locus_tag="I79_016119" /product="Zinc finger protein 524" CDS 386583..387503 /locus_tag="I79_016119" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Zinc finger protein 524" /protein_id="EGW07511.1" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR015880" /db_xref="UniProtKB/Swiss-Prot:Q9D0B1" /db_xref="UniProtKB/TrEMBL:Q4SN67" /translation="MALSTCIQNCLINLYTELPCYVGLKRLSXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXELAHHHRIHSGERPYQCPSCRVRFTEANTLRRHYKRKHPELVGMPVRLCPPN PRPQPLWDDDDDDEEGVPVAERVQEESPEGKGPASPLPGFTAGSSAAAGRGQGGQDTL ISGDVSITEGGQKQGPRPLGPDAVQHPPAD" assembly_gap 386667..387080 /estimated_length=414 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 389266..389333 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 391262..391572 /estimated_length=311 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 397672..397738 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 398797..403443 /estimated_length=4647 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 406475..406639 /estimated_length=165 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 406831..406858 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 408452..409509 /estimated_length=1058 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 415930..415968 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 417814..417851 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 419157..419370 /estimated_length=214 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 420315..424122 /estimated_length=3808 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 424369..470763 /locus_tag="I79_016120" mRNA join(424369..424440,441015..441153,445244..445323, 445398..445520,445798..445884,446127..446375, 460395..460644,463540..463664,470620..470763) /locus_tag="I79_016120" /product="Splicing factor U2AF 65 kDa subunit" CDS join(424369..424440,441015..441153,445244..445323, 445398..445520,445798..445884,446127..446375, 460395..460644,463540..463664,470620..470763) /locus_tag="I79_016120" /note="GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]" /codon_start=1 /product="Splicing factor U2AF 65 kDa subunit" /protein_id="EGW07512.1" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR001026" /db_xref="InterPro:IPR003903" /db_xref="InterPro:IPR008942" /db_xref="InterPro:IPR013809" /db_xref="UniProtKB/Swiss-Prot:P26369" /db_xref="UniProtKB/TrEMBL:Q80XR5" /translation="MLVLLLSCCPETLALPSVEAMEDPFRSVDETTQAMAFDGIIFQG QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELL TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV GAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIV EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKAMTLMEYLIKTGSERVSQQCKENMYA VQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQTATA SSAAVGSGPPPEAQQAWPQSSGEEELQLQLALAMSKEEADQVKGAGKVEGMAEVAATP QIRGCRSPGALVLRRGSVGLVAVCLAEQFT" assembly_gap 424752..425213 /estimated_length=462 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 426140..427568 /estimated_length=1429 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 427739..427993 /estimated_length=255 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 428152..429009 /estimated_length=858 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 429346..429447 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 430227..433537 /estimated_length=3311 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 436689..436752 /estimated_length=64 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 438325..438334 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 438574..439437 /estimated_length=864 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 439605..440335 /estimated_length=731 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 448099..448167 /estimated_length=69 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 449920..451507 /estimated_length=1588 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 451693..451886 /estimated_length=194 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 452156..452486 /estimated_length=331 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 452789..452844 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 453613..453697 /estimated_length=85 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 453896..455422 /estimated_length=1527 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 456656..457285 /estimated_length=630 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 457608..457617 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 460968..461102 /estimated_length=135 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 461539..461565 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 464185..464665 /estimated_length=481 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 465687..466714 /estimated_length=1028 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 466864..467007 /estimated_length=144 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 468212..468264 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 468738..469811 /estimated_length=1074 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 471095..471113 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(480140..619501) /locus_tag="I79_016123" mRNA complement(join(480140..480723,619369..619501)) /locus_tag="I79_016123" /product="Ret finger protein-like 4A" CDS complement(join(480140..480723,619369..619501)) /locus_tag="I79_016123" /codon_start=1 /product="Ret finger protein-like 4A" /protein_id="EGW07515.1" /db_xref="InterPro:IPR001870" /db_xref="InterPro:IPR003877" /db_xref="InterPro:IPR006574" /db_xref="InterPro:IPR018355" /db_xref="UniProtKB/Swiss-Prot:A6NLU0" /db_xref="UniProtKB/TrEMBL:Q8VH31" /translation="MTDNITWFHGIQVMPGSFTVESLSFAQNFLVKDDDVFLVTYPRS VHMTLDPDTAHDRLIISDDLMSVYCSSKRQDRKECAERFQVSTCVLGSSRFTSGRHYW ELVVGRSKEWDVGVCKDSVNRQEPINLTEEHGFWTVGVRGGEVYAACTEPLTVLIVNP RLHRVGIFLDLVRKSISFWDLSDGSHIFTFFNISDTDPLRPFFAPANSYPDDPKEALA ICPVLNPGIFRRPANPEQGK" assembly_gap 485545..485935 /estimated_length=391 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 486594..486603 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 489283..489440 /estimated_length=158 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 489625..489653 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 490993..491030 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 494061..494101 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 501475..502428 /locus_tag="I79_016121" mRNA 501475..502428 /locus_tag="I79_016121" /product="Vomeronasal type-1 receptor 4" CDS 501475..502428 /locus_tag="I79_016121" /codon_start=1 /product="Vomeronasal type-1 receptor 4" /protein_id="EGW07513.1" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/Swiss-Prot:Q7Z5H5" /db_xref="UniProtKB/TrEMBL:Q8K3N5" /translation="MIVTPVSTDALSMSAHNKALKTTEEAALQMILNCQFGVGTVANI FLFVHNFSPVLTGNRMKPTQEILSHMAVANAFILLITVSPNNMMVFAPRIPLTDFRCK LEFFIRLVARSINLCSTSVLSTYQFVTLVPGHWVSLVLRGRVTHLVSYSCYGCWLVSV INNVYIPMTVTGPQKPGNDTVPRSKLFCSTSGFSVGIVFLRFAHDATFISIMTWTSVS MVILLRRHHQRTKHILTPIQDHRVHAETRAAHTILTLVVTFVSFYLLNFICIIFHNLL IDSRLWMRHVGEVLAVSFPTISPFLLILRDPKDPCSLLFHH" assembly_gap 505514..505548 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 505986..506204 /estimated_length=219 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 507691..508046 /estimated_length=356 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 513933..514199 /estimated_length=267 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 524887..524919 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 526197..526254 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 526619..526831 /estimated_length=213 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 527606..527692 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 527881..528405 /estimated_length=525 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 528634..528753 /estimated_length=120 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 532034..532074 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 538093..538290 /estimated_length=198 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 545219..545387 /estimated_length=169 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 545630..545746 /estimated_length=117 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 546777..546786 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 547736..550889 /estimated_length=3154 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 552480..553084 /estimated_length=605 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 565568..566007 /estimated_length=440 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 570163..570187 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 570277..589724 /locus_tag="I79_016122" mRNA join(570277..570458,573834..573998,574617..574784, 576886..577056,585214..585384,587155..587325, 589577..589724) /locus_tag="I79_016122" /product="NACHT, LRR and PYD domains-containing protein 9A" CDS join(570277..570458,573834..573998,574617..574784, 576886..577056,585214..585384,587155..587325, 589577..589724) /locus_tag="I79_016122" /codon_start=1 /product="NACHT, LRR and PYD domains-containing protein 9A" /protein_id="EGW07514.1" /db_xref="InterPro:IPR003590" /db_xref="UniProtKB/Swiss-Prot:Q66X03" /db_xref="UniProtKB/TrEMBL:B9EIZ9" /translation="MDLFEEMTIDISSADALSVATTCLLKSQRLKNLHLHIQHRVFSE KYKPEDGDLEAFKHEKMCSFVTNFGHGVLFHTLLQLPHLKSLNLYGTNLSNDVVENMC CVLKCSTCRVEELLLGKCNLSSEACGIIATSLIFCKVKHLSLVENPLKNKGVMLLCET LKRPSCDLETLMLSYCALTFIACGHLYEALLHNKYLSLLDLSSNFLGDTGVNILCKAL KDPMCPLQELWLSGCYLTSDCCEEISAVLTHNQKLKTLKLGNNNIQDTGVRQLCEALS NPECKLQCLGLDMCEFTTGSCADLALALTTCKTLTMLNLDRMTFDRDGLKLLCEALNH KDCNLKVLGLDKSAFCEESQKILQEVEKKNTLDILHYPWIKEESKKRGVRLVWNSEN" assembly_gap 577815..583593 /estimated_length=5779 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 590067..590076 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 599257..599266 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 605551..605800 /estimated_length=250 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 610946..610955 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 616075..617773 /estimated_length=1699 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 617916..619248 /estimated_length=1333 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 637354..637815 /estimated_length=462 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 639022..639222 /estimated_length=201 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 639378..639412 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 647139..647191 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 647441..647634 /estimated_length=194 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 659038..659126 /estimated_length=89 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 661132..661227 /estimated_length=96 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 675502..675748 /estimated_length=247 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 686676..686794 /estimated_length=119 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 686893..687531 /locus_tag="I79_016124" mRNA 686893..687531 /locus_tag="I79_016124" /product="AMME syndrome candidate gene 1 protein-like" CDS 686893..687531 /locus_tag="I79_016124" /codon_start=1 /product="AMME syndrome candidate gene 1 protein-like" /protein_id="EGW07516.1" /db_xref="InterPro:IPR002733" /db_xref="UniProtKB/Swiss-Prot:Q5RAS7" /db_xref="UniProtKB/TrEMBL:Q5JYV9" /translation="MLVSAEMCCFCFDVLSCHLYGHQQPRTPGFANEPYPLFVTWKFG QDERSRGCLGTLSAVTLHSRRRENTLISALKDPRFPPLTRDELPRLLCSVSLLTDFED ICDDLDWELGVHGIRIEFINEEASRCTATYLPEVAKEQGWDRTQTIDSLPRKGGYKAL VTNEYRKTVKLTRYRREKMTLSYAEYLARRQHHCFQNGIGQPLPPNNHYSWC" assembly_gap 692561..692577 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="unspecified" CONTIG join(AFTD01098917.1:1..859,gap(11),AFTD01098918.1:1..3062,gap(176), AFTD01098919.1:1..1017,gap(142),AFTD01098920.1:1..200,gap(642), AFTD01098921.1:1..1251,gap(1407),AFTD01098922.1:1..280,gap(1162), AFTD01098923.1:1..3537,gap(25),AFTD01098924.1:1..625,gap(75), AFTD01098925.1:1..4188,gap(29),AFTD01098926.1:1..1260,gap(135), AFTD01098927.1:1..4512,gap(16),AFTD01098928.1:1..2940,gap(189), AFTD01098929.1:1..725,gap(50),AFTD01098930.1:1..200,gap(356), AFTD01098931.1:1..247,gap(10),AFTD01098932.1:1..6068,gap(19), AFTD01098933.1:1..1172,gap(1531),AFTD01098934.1:1..2422,gap(509), AFTD01098935.1:1..5113,gap(617),AFTD01098936.1:1..8059,gap(1684), AFTD01098937.1:1..697,gap(261),AFTD01098938.1:1..174,gap(263), AFTD01098939.1:1..2509,gap(177),AFTD01098940.1:1..384,gap(461), AFTD01098941.1:1..4555,gap(10),AFTD01098942.1:1..3064,gap(128), AFTD01098943.1:1..1445,gap(1739),AFTD01098944.1:1..946,gap(116), AFTD01098945.1:1..1547,gap(10),AFTD01098946.1:1..437,gap(79), AFTD01098947.1:1..198,gap(140),AFTD01098948.1:1..864,gap(1442), AFTD01098949.1:1..3899,gap(1838),AFTD01098950.1:1..627,gap(111), AFTD01098951.1:1..5094,gap(36),AFTD01098952.1:1..1821,gap(35), AFTD01098953.1:1..4080,gap(181),AFTD01098954.1:1..1132,gap(87), AFTD01098955.1:1..228,gap(120),AFTD01098956.1:1..730,gap(168), AFTD01098957.1:1..7433,gap(1328),AFTD01098958.1:1..1657,gap(54), AFTD01098959.1:1..1591,gap(1645),AFTD01098960.1:1..433,gap(42), AFTD01098961.1:1..2211,gap(537),AFTD01098962.1:1..4800,gap(27), AFTD01098963.1:1..6746,gap(11),AFTD01098964.1:1..1115,gap(48), AFTD01098965.1:1..245,gap(94),AFTD01098966.1:1..232,gap(2276), AFTD01098967.1:1..1385,gap(63),AFTD01098968.1:1..189,gap(59), AFTD01098969.1:1..3105,gap(822),AFTD01098970.1:1..1161,gap(221), AFTD01098971.1:1..3531,gap(86),AFTD01098972.1:1..711,gap(188), AFTD01098973.1:1..394,gap(122),AFTD01098974.1:1..167,gap(809), AFTD01098975.1:1..1000,gap(730),AFTD01098976.1:1..1738,gap(17), AFTD01098977.1:1..3247,gap(1213),AFTD01098978.1:1..1843,gap(80), AFTD01098979.1:1..470,gap(131),AFTD01098980.1:1..1935,gap(14), AFTD01098981.1:1..347,gap(69),AFTD01098982.1:1..190,gap(21), AFTD01098983.1:1..170,gap(2416),AFTD01098984.1:1..919,gap(165), AFTD01098985.1:1..3697,gap(30),AFTD01098986.1:1..1901,gap(235), AFTD01098987.1:1..220,gap(10),AFTD01098988.1:1..6178,gap(638), AFTD01098989.1:1..175,gap(38),AFTD01098990.1:1..758,gap(216), AFTD01098991.1:1..171,gap(10),AFTD01098992.1:1..291,gap(10), AFTD01098993.1:1..7881,gap(22),AFTD01098994.1:1..7998,gap(43), AFTD01098995.1:1..205,gap(2727),AFTD01098996.1:1..173,gap(2173), AFTD01098997.1:1..387,gap(1012),AFTD01098998.1:1..2702,gap(520), AFTD01098999.1:1..1922,gap(317),AFTD01099000.1:1..4425,gap(41), AFTD01099001.1:1..233,gap(127),AFTD01099002.1:1..2702,gap(104), AFTD01099003.1:1..585,gap(1202),AFTD01099004.1:1..305,gap(83), AFTD01099005.1:1..2323,gap(10),AFTD01099006.1:1..462,gap(455), AFTD01099007.1:1..585,gap(521),AFTD01099008.1:1..221,gap(1248), AFTD01099009.1:1..410,gap(50),AFTD01099010.1:1..274,gap(52), AFTD01099011.1:1..160,gap(1385),AFTD01099012.1:1..220,gap(146), AFTD01099013.1:1..1893,gap(1999),AFTD01099014.1:1..674,gap(55), AFTD01099015.1:1..206,gap(16),AFTD01099016.1:1..4753,gap(3186), AFTD01099017.1:1..2427,gap(171),AFTD01099018.1:1..5170,gap(10), AFTD01099019.1:1..196,gap(546),AFTD01099020.1:1..3084,gap(797), AFTD01099021.1:1..10599,gap(10),AFTD01099022.1:1..1979,gap(764), AFTD01099023.1:1..3510,gap(96),AFTD01099024.1:1..169,gap(39), AFTD01099025.1:1..2307,gap(887),AFTD01099026.1:1..6034,gap(49), AFTD01099027.1:1..6075,gap(468),AFTD01099028.1:1..1965,gap(1049), AFTD01099029.1:1..2339,gap(45),AFTD01099030.1:1..1913,gap(1326), AFTD01099031.1:1..2637,gap(117),AFTD01099032.1:1..367,gap(4886), AFTD01099033.1:1..975,gap(617),AFTD01099034.1:1..591,gap(143), AFTD01099035.1:1..252,gap(1149),AFTD01099036.1:1..1275,gap(294), AFTD01099037.1:1..439,gap(132),AFTD01099038.1:1..368,gap(363), AFTD01099039.1:1..1990,gap(60),AFTD01099040.1:1..269,gap(10), AFTD01099041.1:1..1332,gap(54),AFTD01099042.1:1..437,gap(388), AFTD01099043.1:1..428,gap(129),AFTD01099044.1:1..1669,gap(234), AFTD01099045.1:1..2071,gap(210),AFTD01099046.1:1..708,gap(1525), AFTD01099047.1:1..5334,gap(71),AFTD01099048.1:1..248,gap(129), AFTD01099049.1:1..1291,gap(20),AFTD01099050.1:1..1577,gap(27), AFTD01099051.1:1..540,gap(277),AFTD01099052.1:1..1859,gap(114), AFTD01099053.1:1..345,gap(66),AFTD01099054.1:1..924,gap(66), AFTD01099055.1:1..2787,gap(216),AFTD01099056.1:1..7357,gap(68), AFTD01099057.1:1..280,gap(794),AFTD01099058.1:1..2648,gap(10), AFTD01099059.1:1..2965,gap(190),AFTD01099060.1:1..5608,gap(32), AFTD01099061.1:1..3596,gap(33),AFTD01099062.1:1..3873,gap(10), AFTD01099063.1:1..4922,gap(10),AFTD01099064.1:1..1191,gap(2627), AFTD01099065.1:1..311,gap(177),AFTD01099066.1:1..189,gap(279), AFTD01099067.1:1..1800,gap(369),AFTD01099068.1:1..6793,gap(1488), AFTD01099069.1:1..3888,gap(196),AFTD01099070.1:1..155,gap(2107), AFTD01099071.1:1..2022,gap(78),AFTD01099072.1:1..187,gap(414), AFTD01099073.1:1..2185,gap(68),AFTD01099074.1:1..1928,gap(311), AFTD01099075.1:1..6099,gap(67),AFTD01099076.1:1..1058,gap(4647), AFTD01099077.1:1..3031,gap(165),AFTD01099078.1:1..191,gap(28), AFTD01099079.1:1..1593,gap(1058),AFTD01099080.1:1..6420,gap(39), AFTD01099081.1:1..1845,gap(38),AFTD01099082.1:1..1305,gap(214), AFTD01099083.1:1..944,gap(3808),AFTD01099084.1:1..629,gap(462), AFTD01099085.1:1..926,gap(1429),AFTD01099086.1:1..170,gap(255), AFTD01099087.1:1..158,gap(858),AFTD01099088.1:1..336,gap(102), AFTD01099089.1:1..779,gap(3311),AFTD01099090.1:1..3151,gap(64), AFTD01099091.1:1..1572,gap(10),AFTD01099092.1:1..239,gap(864), AFTD01099093.1:1..167,gap(731),AFTD01099094.1:1..7763,gap(69), AFTD01099095.1:1..1752,gap(1588),AFTD01099096.1:1..185,gap(194), AFTD01099097.1:1..269,gap(331),AFTD01099098.1:1..302,gap(56), AFTD01099099.1:1..768,gap(85),AFTD01099100.1:1..198,gap(1527), AFTD01099101.1:1..1233,gap(630),AFTD01099102.1:1..322,gap(10), AFTD01099103.1:1..3350,gap(135),AFTD01099104.1:1..436,gap(27), AFTD01099105.1:1..2619,gap(481),AFTD01099106.1:1..1021,gap(1028), AFTD01099107.1:1..149,gap(144),AFTD01099108.1:1..1204,gap(53), AFTD01099109.1:1..473,gap(1074),AFTD01099110.1:1..1283,gap(19), AFTD01099111.1:1..14431,gap(391),AFTD01099112.1:1..658,gap(10), AFTD01099113.1:1..2679,gap(158),AFTD01099114.1:1..184,gap(29), AFTD01099115.1:1..1339,gap(38),AFTD01099116.1:1..3030,gap(41), AFTD01099117.1:1..11412,gap(35),AFTD01099118.1:1..437,gap(219), AFTD01099119.1:1..1486,gap(356),AFTD01099120.1:1..5886,gap(267), AFTD01099121.1:1..10687,gap(33),AFTD01099122.1:1..1277,gap(58), AFTD01099123.1:1..364,gap(213),AFTD01099124.1:1..774,gap(87), AFTD01099125.1:1..188,gap(525),AFTD01099126.1:1..228,gap(120), AFTD01099127.1:1..3280,gap(41),AFTD01099128.1:1..6018,gap(198), AFTD01099129.1:1..6928,gap(169),AFTD01099130.1:1..242,gap(117), AFTD01099131.1:1..1030,gap(10),AFTD01099132.1:1..949,gap(3154), AFTD01099133.1:1..1590,gap(605),AFTD01099134.1:1..12483,gap(440), AFTD01099135.1:1..4155,gap(25),AFTD01099136.1:1..7627,gap(5779), AFTD01099137.1:1..6473,gap(10),AFTD01099138.1:1..9180,gap(10), AFTD01099139.1:1..6284,gap(250),AFTD01099140.1:1..5145,gap(10), AFTD01099141.1:1..5119,gap(1699),AFTD01099142.1:1..142,gap(1333), AFTD01099143.1:1..18105,gap(462),AFTD01099144.1:1..1206,gap(201), AFTD01099145.1:1..155,gap(35),AFTD01099146.1:1..7726,gap(53), AFTD01099147.1:1..249,gap(194),AFTD01099148.1:1..11403,gap(89), AFTD01099149.1:1..2005,gap(96),AFTD01099150.1:1..14274,gap(247), AFTD01099151.1:1..10927,gap(119),AFTD01099152.1:1..5766,gap(17), AFTD01099153.1:1..1592) //