LOCUS       JH000329             1655907 bp    DNA     linear   CON 25-JUL-2016
DEFINITION  Cricetulus griseus cell line CHO-K1 unplaced genomic scaffold
            scaffold3816, whole genome shotgun sequence.
ACCESSION   JH000329 AFTD01000000
VERSION     JH000329.1
DBLINK      BioProject: PRJNA69991
            BioSample: SAMN02981352
KEYWORDS    WGS.
SOURCE      Cricetulus griseus (Chinese hamster)
  ORGANISM  Cricetulus griseus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Cricetinae; Cricetulus.
REFERENCE   1  (bases 1 to 1655907)
  AUTHORS   Xu,X., Nagarajan,H., Lewis,N.E., Pan,S., Cai,Z., Liu,X., Chen,W.,
            Xie,M., Wang,W., Hammond,S., Andersen,M.R., Neff,N., Passarelli,B.,
            Koh,W., Fan,C.H., Wang,J., Gui,Y., Lee,K.H., Betenbaugh,M.J.,
            Quake,S.R., Famili,I., Palsson,B.O. and Wang,J.
  TITLE     The genomic sequence of the Chinese hamster ovary CHO-K1 cell line
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1655907)
  AUTHORS   Xu,X., Nagarajan,H., Lewis,N.E., Pan,S., Cai,Z., Liu,X., Chen,W.,
            Xie,M., Wang,W., Hammond,S., Andersen,M.R., Neff,N., Passarelli,B.,
            Koh,W., Fan,C.H., Wang,J., Gui,Y., Lee,K.H., Betenbaugh,M.J.,
            Quake,S.R., Famili,I., Palsson,B.O. and Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2011) Beijing Genomics Institute in Shenzhen,
            Beishan Industrial Zone, Yantian District, Shenzhen, China
COMMENT     Source of DNA is available from ATCC Catalog No. CCL-61.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.05
            Assembly Name         :: CriGri_1.0
            Genome Coverage       :: 130x
            Sequencing Technology :: Illumina GA IIx
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655907
                     /organism="Cricetulus griseus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold3816"
                     /db_xref="taxon:10029"
                     /chromosome="Unknown"
                     /cell_line="CHO-K1"
     assembly_gap    30474..30572
                     /estimated_length=99
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    30882..31349
                     /estimated_length=468
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    31528..31558
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    32589..32842
                     /estimated_length=254
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    33370..33925
                     /estimated_length=556
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    34097..34512
                     /estimated_length=416
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    87140..87388
                     /estimated_length=249
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    94557..94566
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    214167..214484
                     /estimated_length=318
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    214621..214689
                     /estimated_length=69
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    214998..215175
                     /estimated_length=178
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    246875..246942
                     /estimated_length=68
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    277558..277581
                     /estimated_length=24
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    350549..350562
                     /estimated_length=14
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    354089..354590
                     /estimated_length=502
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    391820..391864
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            408663..450091
                     /locus_tag="I79_009346"
     mRNA            join(408663..408738,418469..418508,418602..418787,
                     423527..423557,447271..447412,449961..450091)
                     /locus_tag="I79_009346"
                     /product="hypothetical protein"
     CDS             join(408663..408738,418469..418508,418602..418787,
                     423527..423557,447271..447412,449961..450091)
                     /locus_tag="I79_009346"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EGW11123.1"
                     /translation="MLFTNSLRMSLTTQMALEKLFSFRIGLEEEATDISKVVRCPSMF
                     VQILDMCNLKEYNDFLTTPDILIRSIPTSSHWPSKVQMCNEQPQDVPWTEVIAFIPRD
                     EKTKMLIGERTVSRPSCIAGRLIEPGEEVRLPARVGGDGRAALRAGARARQPVGPADT
                     RRPKRTGGGTDRRTDRWSARTREDRRRRLSTASPSAALEEN"
     assembly_gap    447526..447539
                     /estimated_length=14
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    533000..533236
                     /estimated_length=237
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    533537..533546
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    631325..631395
                     /estimated_length=71
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    748745..748779
                     /estimated_length=35
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    761912..761921
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    864842..864871
                     /estimated_length=30
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <884643..1010976
                     /locus_tag="I79_009347"
     mRNA            join(<884643..884736,915138..915287,920774..920923,
                     968430..968587,978553..978703,984360..984465,
                     989972..990120,991686..991813,992639..992765,
                     995728..995828,998857..999055,1003665..1003772,
                     1005387..1005496,1009753..1009839,1010533..1010976)
                     /locus_tag="I79_009347"
                     /product="Kin of IRRE-like protein 3"
     CDS             join(<884643..884736,915138..915287,920774..920923,
                     968430..968587,978553..978703,984360..984465,
                     989972..990120,991686..991813,992639..992765,
                     995728..995828,998857..999055,1003665..1003772,
                     1005387..1005496,1009753..1009839,1010533..1010976)
                     /locus_tag="I79_009347"
                     /codon_start=1
                     /product="Kin of IRRE-like protein 3"
                     /protein_id="EGW11124.1"
                     /db_xref="InterPro:IPR003598"
                     /db_xref="InterPro:IPR003599"
                     /db_xref="InterPro:IPR007110"
                     /db_xref="InterPro:IPR013098"
                     /db_xref="InterPro:IPR013106"
                     /db_xref="InterPro:IPR013162"
                     /db_xref="UniProtKB/Swiss-Prot:Q8BR86"
                     /db_xref="UniProtKB/TrEMBL:Q09GS6"
                     /translation="YVFFPELGLQKRGCCLVLGYMAKDKFRRMNEGQVYSFSQQPQDQ
                     VVVSGQPVTLLCAIPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLSGEHHLKIL
                     RAELQDDAVYECQAIQAAIRSRPARLTVLVPPDDPIILGGPVISLRAGDPLNLTCHAD
                     NAKPAASIIWLRKGEVINGATYSKTLLRDGKRESIVSTLFISPGDVENGQSIVCRATN
                     KAIPGGKETSVTIDIQHPPLVNLSVEPQPVLEDNIVTFHCSAKANPAVTQYRWAKRGH
                     IIKEASGELYRTTVDYTYFSEPVSCEVTNALGSTNLSRTVDVYFGPRMTSEPQSLLVD
                     LGSDAVFSCSWIGNPSLTIVWMKRGSGVVLSNEKTLTLKSVRQEDAGKYVCRAVVPRV
                     GAGEREVTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG
                     TSGRYTVETVSTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQESVP
                     MAVIIGVAVGAGVAFLVLMATIVAFCCARSQRNLKGVVSAKNDIRVEIVHKEPASGRE
                     AEDHTTIKQLMMDRGEFQQDSVLKQLEVLKEEEKEFQNLKDPTNGYYSVNTFKEHHST
                     PTISLSSCQPDLRPTGKQRVPTGMSFTNIYSTLSGQGRLYDYGQRFVLGMGSSSIELC
                     EREFQRGSLSDSSSFLDTQCDSSVSSSGKQDGYVQFDKASKASASSSHHSQSSSQNSD
                     PSRPLQRRMQTHV"
     assembly_gap    965287..965452
                     /estimated_length=166
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    973399..973413
                     /estimated_length=15
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    975825..975950
                     /estimated_length=126
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    983130..983228
                     /estimated_length=99
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1018722..1018831
                     /estimated_length=110
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(1022015..1064944)
                     /locus_tag="I79_009348"
     mRNA            complement(join(1022015..1022101,1022419..1022562,
                     1025386..1025529,1026243..1026432,1026547..1026642,
                     1027339..1027399,1027677..1027774,1027949..1028029,
                     1028423..1028510,1028813..1028888,1064930..1064944))
                     /locus_tag="I79_009348"
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
     CDS             complement(join(1022015..1022101,1022419..1022562,
                     1025386..1025529,1026243..1026432,1026547..1026642,
                     1027339..1027399,1027677..1027774,1027949..1028029,
                     1028423..1028510,1028813..1028888,1064930..1064944))
                     /locus_tag="I79_009348"
                     /note="GO_component: GO:0030173 - integral to Golgi
                     membrane [Evidence IEA];
                     GO_function: GO:0008373 - sialyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006486 - protein amino acid glycosylation
                     [Evidence IEA]"
                     /codon_start=1
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="EGW11125.1"
                     /db_xref="InterPro:IPR001675"
                     /db_xref="UniProtKB/Swiss-Prot:P61131"
                     /db_xref="UniProtKB/TrEMBL:Q80WL0"
                     /translation="MTPEKVARGSRDDTSPQEPCYLLRNMTSKSRCKFLAMLALVFVV
                     VMVWYSISREDRYFELFYFPISEKKEPCFQGEAERQASKIFGNHSREQPIFLQLKDYF
                     WVKTPSTYELPFGTKGSEDLLLRVLAITSYSIPESIQSLQCRRCVVVGNGHRLRNSSL
                     GSIINKYDVVIRLNNAPVAGYEGDVGSKTTIRLFYPESAHFDPKIENNPDTLLVLVAF
                     KAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAAEKLLSLPIQ
                     QSRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPEAYNKKQTIHYYEQITLKSMAGSG
                     HNVSQEALAIKRMLEMGAVKNLTYF"
     assembly_gap    1043732..1043741
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1060883..1060977
                     /estimated_length=95
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1064039..1064300
                     /estimated_length=262
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(1073759..1118071)
                     /locus_tag="I79_009349"
     mRNA            complement(join(1073759..1074034,1075696..1075806,
                     1078682..1078795,1085616..1085761,1116340..1116514,
                     1117874..1118071))
                     /locus_tag="I79_009349"
                     /product="Scavenger mRNA-decapping enzyme DcpS"
     CDS             complement(join(1073759..1074034,1075696..1075806,
                     1078682..1078795,1085616..1085761,1116340..1116514,
                     1117874..1118071))
                     /locus_tag="I79_009349"
                     /note="GO_function: GO:0003824 - catalytic activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0000290 - deadenylation-dependent decapping
                     of nuclear-transcribed mRNA [Evidence IEA]"
                     /codon_start=1
                     /product="Scavenger mRNA-decapping enzyme DcpS"
                     /protein_id="EGW11126.1"
                     /db_xref="InterPro:IPR008594"
                     /db_xref="InterPro:IPR011145"
                     /db_xref="InterPro:IPR011146"
                     /db_xref="UniProtKB/Swiss-Prot:Q9DAR7"
                     /db_xref="UniProtKB/TrEMBL:Q3B8P4"
                     /translation="MADTAPQLKRKREPEAEESETPSTDEKEAGVGNGASAPVRLPFS
                     GFRVQKVLRESARDKIIFLHGKVNEDSGDTPGEDAVVILEKTPFQVEHVAQLLTGSPE
                     LKLQFSNDIYSTYNLFPPRHLSDIKTTVVYPATEKHLQKYMRQDLRLIRETGDDYRNI
                     TLPHLESQSLSIQWVYNILDKKAEADRIVFENPDPADGFVLIPDLKWNQQQLDDLYLI
                     AICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLPSYYHLH
                     VHFTALGFEAPGSGVERAHLLAEVIENLECDPKHYQQRTLTFALRTDDPLLQLLQGSP
                     ANQSC"
     assembly_gap    1125825..1126079
                     /estimated_length=255
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(1135359..1138280)
                     /locus_tag="I79_009350"
     mRNA            complement(join(1135359..1135378,1135936..1136586,
                     1138214..1138280))
                     /locus_tag="I79_009350"
                     /product="Toll/interleukin-1 receptor domain-containing
                     adapter protein"
     CDS             complement(join(1135359..1135378,1135936..1136586,
                     1138214..1138280))
                     /locus_tag="I79_009350"
                     /note="GO_component: GO:0031224 - intrinsic to membrane
                     [Evidence IEA];
                     GO_function: GO:0004888 - transmembrane receptor activity
                     [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA];
                     GO_process: GO:0045087 - innate immune response [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Toll/interleukin-1 receptor domain-containing
                     adapter protein"
                     /protein_id="EGW11127.1"
                     /db_xref="InterPro:IPR000157"
                     /db_xref="UniProtKB/Swiss-Prot:Q99JY1"
                     /db_xref="UniProtKB/TrEMBL:Q542S6"
                     /translation="MASSSSIPASPTQSKKPRDKIADWFRQALKKPKKMTVSGESHPS
                     EGSQTATQDGPLPQSSSSPTSRSSQPSCSSPPSYKSLPSCSSGMASTLQPTQMDTSCS
                     SGRWSKDYDVCVCHSEEDLEAAQELVSYLEGSQASLRCFLQLRDATPGGAIVSELCQA
                     LSSSHCHVLLITPGFLRDPWCKYQMLQALTEAPGAEGCTIPLMSGLTRAAYPPELRFM
                     YYVDGRGRDGGFYQVKEAVIRYLETLS"
     gene            complement(1152255..1158683)
                     /locus_tag="I79_009352"
     mRNA            complement(join(1152255..1152509,1152739..1152843,
                     1153028..1153157,1153304..1153464,1153673..1153749,
                     1154893..1154994,1155283..1155377,1156404..1156522,
                     1156789..1156902,1157710..1157930,1158599..1158683))
                     /locus_tag="I79_009352"
                     /product="FAD-dependent oxidoreductase domain-containing
                     protein 1"
     CDS             complement(join(1152255..1152509,1152739..1152843,
                     1153028..1153157,1153304..1153464,1153673..1153749,
                     1154893..1154994,1155283..1155377,1156404..1156522,
                     1156789..1156902,1157710..1157930,1158599..1158683))
                     /locus_tag="I79_009352"
                     /note="GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /product="FAD-dependent oxidoreductase domain-containing
                     protein 1"
                     /protein_id="EGW11129.1"
                     /db_xref="InterPro:IPR006076"
                     /db_xref="UniProtKB/Swiss-Prot:Q3TQB2"
                     /db_xref="UniProtKB/TrEMBL:B3KN84"
                     /translation="MFRRVLRLGLTPGRPNRGLRTRRGGFILDWDAKVSDFKKKIECM
                     LPGKQWGMPYDTSYLPPKQSDVVIIGGGILGLSVAFWLKKMESSRGAIRVLVVEQDHT
                     YSRASSTGPSVGGIWQQFSVPENVQLSLFSINFLRNINEYLAVVDAPLVDLQFNPSGC
                     LLLASEKNAATLESNVKMQRQEGAKVCLISPEQLQNKFPWINIEGVALASYGMEDEGW
                     FDAWSLFQGLRRKVQSMGVLLYQGEVTRFITSSRQMETTSGEQVVLRRIHEVQVKMNN
                     SLEYQPVECAVVINAAGAWSGQVAELAGIGKGLPGTLQGTKLPVEPRKRYVHLWHCPQ
                     GPGLETPLVADINGVYFRREGLGSNYLGGCSPTEEEEPDPTNLEVDHDFFQNKVWPHL
                     VQRVPSFKTLKVQSNWAGYYDYNTFDQNGVVGPHPLVVNMYFATGFSGHGLQHAPGIG
                     RAVAEMVLEGQFKTIDMSPFLFNRFYLGEKLQEYNIL"
     gene            1154052..1154234
                     /locus_tag="I79_009351"
     mRNA            1154052..1154234
                     /locus_tag="I79_009351"
                     /product="hypothetical protein"
     CDS             1154052..1154234
                     /locus_tag="I79_009351"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EGW11128.1"
                     /translation="MRRRVLVRGGVSPGIDTEVSKAHTRPSVSPCLLPVDQNLALSYF
                     SRTMPACLLPCFPPCR"
     gene            1159076..1163853
                     /locus_tag="I79_009353"
     mRNA            join(1159076..1159192,1159758..1159841,1160112..1160275,
                     1160475..1160635,1160886..1161042,1161157..1161310,
                     1161501..1161589,1161696..1161814,1161935..1162021,
                     1162300..1162472,1162566..1162779,1163257..1163420,
                     1163503..1163601,1163725..1163853)
                     /locus_tag="I79_009353"
                     /product="Signal recognition particle receptor subunit
                     alpha"
     CDS             join(1159076..1159192,1159758..1159841,1160112..1160275,
                     1160475..1160635,1160886..1161042,1161157..1161310,
                     1161501..1161589,1161696..1161814,1161935..1162021,
                     1162300..1162472,1162566..1162779,1163257..1163420,
                     1163503..1163601,1163725..1163853)
                     /locus_tag="I79_009353"
                     /note="GO_component: GO:0005785 - signal recognition
                     particle receptor complex [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0017111 - nucleoside-triphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA]"
                     /codon_start=1
                     /product="Signal recognition particle receptor subunit
                     alpha"
                     /protein_id="EGW11130.1"
                     /db_xref="InterPro:IPR000897"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR007222"
                     /db_xref="InterPro:IPR013822"
                     /db_xref="UniProtKB/Swiss-Prot:Q9DBG7"
                     /db_xref="UniProtKB/TrEMBL:Q3KRC3"
                     /translation="MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGN
                     NSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQS
                     ALSLLNGTFDFQNDFLRLLREAEESSKIRAPTTMKKFEDSEKSKKPVRSMIETRGEKT
                     KEKTKNNKKKGAKKEGSDGPLATSKTAPAEKSGLPVGPENGELSKEELIRRKREEFIQ
                     KHGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSAPTTNGTPEAALSED
                     INLIRGTGPGGQLQDLDCSSSDDEGATQNTKPSATKGALGGMFGMLKGLVGSKSLSRE
                     DMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLV
                     QILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIA
                     ACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFAR
                     NQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNR
                     ALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSL
                     NAKAVVAALMKA"
     gene            complement(1169974..1199379)
                     /locus_tag="I79_009354"
     mRNA            complement(join(1169974..1170315,1171898..1172026,
                     1180595..1180847,1199273..1199379))
                     /locus_tag="I79_009354"
                     /product="Protein FAM118B"
     CDS             complement(join(1169974..1170315,1171898..1172026,
                     1180595..1180847,1199273..1199379))
                     /locus_tag="I79_009354"
                     /codon_start=1
                     /product="Protein FAM118B"
                     /protein_id="EGW11131.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q4QQT2"
                     /db_xref="UniProtKB/TrEMBL:Q6DF29"
                     /translation="MSSCHNKVDCAKTLLCCILKKLTLQPVSHDNCIIVRKLLPSLKT
                     KKPRELVLVIGTGISAAVAPQVPALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLH
                     EDKNLVHVAHDLIQKLSPVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNT
                     EVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFK
                     KLRENMLDKGIKVISYGNDYADLPEYFKRLTYEISTRGRPGKGRSKSSNPLAFCVFDE
                     "
     assembly_gap    1183139..1183234
                     /estimated_length=96
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1213505..1213635
                     /estimated_length=131
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            1213890..1221868
                     /locus_tag="I79_009355"
     mRNA            join(1213890..1214078,1214433..1214598,1215922..1216123,
                     1218190..1218283,1218357..1218501,1219999..1220096,
                     1221629..1221868)
                     /locus_tag="I79_009355"
                     /product="RNA pseudouridylate synthase domain-containing
                     protein 4"
     CDS             join(1213890..1214078,1214433..1214598,1215922..1216123,
                     1218190..1218283,1218357..1218501,1219999..1220096,
                     1221629..1221868)
                     /locus_tag="I79_009355"
                     /note="GO_function: GO:0003723 - RNA binding [Evidence
                     IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /product="RNA pseudouridylate synthase domain-containing
                     protein 4"
                     /protein_id="EGW11132.1"
                     /db_xref="InterPro:IPR006145"
                     /db_xref="InterPro:IPR020103"
                     /db_xref="UniProtKB/Swiss-Prot:Q4QQT0"
                     /db_xref="UniProtKB/TrEMBL:B5FZZ1"
                     /translation="MAAPRLSTPGLRVLSSKLRPGRLFTPGSKPFCSSATTSRPLNAQ
                     RLAEKLRAQKKEQKTKKMPVPTNPVQRRVQELVRFTQQLQRVHPNVLAKELSRGILHQ
                     DKDLVVINKPYGLPVHGGPGVQLCISDVLPTLAKMLRGHKAEPLHLCHRLDKETTGVM
                     VLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPIVEKEVQGQQQHHKM
                     TLSPSYRMDNGKMVKVRASRNAHVAVTQYQVLSSTPSSALVELQPVTGIKHQLRVHLS
                     FGLDCPILGDHKYSDWNRLAPQKLPAGTLKKLGLHQTKARYIPLHLHARQLILPALGS
                     RTEELLLACKLPHFFAHSLHRLGLEMPNQDQSKGSEARRVEAQ"
     assembly_gap    1355850..1355953
                     /estimated_length=104
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1358191..1358227
                     /estimated_length=37
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1364742..1364833
                     /estimated_length=92
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1367387..1367888
                     /estimated_length=502
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            1398191..1454591
                     /locus_tag="I79_009356"
     mRNA            join(1398191..1398263,1398636..1398908,1400431..1400577,
                     1401415..1401558,1402507..1402794,1404584..1404853,
                     1411376..1411729,1417715..1418004,1418802..1418976,
                     1421922..1422053,1425077..1425280,1426025..1426206,
                     1426680..1426785,1431126..1431248,1434773..1434994,
                     1436809..1437089,1439635..1439714,1453506..1453765,
                     1454431..1454591)
                     /locus_tag="I79_009356"
                     /product="Cell adhesion molecule-related/down-regulated by
                     oncogenes"
     CDS             join(1398191..1398263,1398636..1398908,1400431..1400577,
                     1401415..1401558,1402507..1402794,1404584..1404853,
                     1411376..1411729,1417715..1418004,1418802..1418976,
                     1421922..1422053,1425077..1425280,1426025..1426206,
                     1426680..1426785,1431126..1431248,1434773..1434994,
                     1436809..1437089,1439635..1439714,1453506..1453765,
                     1454431..1454591)
                     /locus_tag="I79_009356"
                     /codon_start=1
                     /product="Cell adhesion molecule-related/down-regulated by
                     oncogenes"
                     /protein_id="EGW11133.1"
                     /db_xref="InterPro:IPR003598"
                     /db_xref="InterPro:IPR003599"
                     /db_xref="InterPro:IPR003961"
                     /db_xref="InterPro:IPR007110"
                     /db_xref="InterPro:IPR008957"
                     /db_xref="InterPro:IPR013098"
                     /db_xref="InterPro:IPR013106"
                     /db_xref="InterPro:IPR013151"
                     /db_xref="UniProtKB/Swiss-Prot:Q32MD9"
                     /db_xref="UniProtKB/TrEMBL:B7ZSK5"
                     /translation="MHPDLGPLWTLLYVLGILCSSVSSDLAPYFISEPLSAVQKLGRP
                     VVLYCSAKPVTASISWLHNGKRLDRNTEQIKIHQGTLTILSLNPSLSGYYQCIANNSI
                     GAIVSGPATVSTAALGDFDSSTMHVITAEEKNTGFIGCRVPESNPKAEVRYKIRGKWL
                     KHSTGNYIILPSGNLQILNVSSKDKGSYKCAAYNPVTSELKVEPTGRKLLVSRSSSDG
                     FHILHPALSQALTVLPHSPVTLECVVSGVPASQVYWLKDGQDIVSGSNWRRLYSHLAT
                     ASIDSADSGNYSCVVGNKSGDVKHVTYMVNVLERASISKGLQDQKVSLGATVHFTCDV
                     CGNPAPNRTWFHNAQPIHPSSRHLTEGNGLKITGVTMEDSGLYQCVADNGIGFMQSTG
                     RLQIEQDSGLKPVIVTAPANVEVMDGDFVTLSCNATGVPVPVIHWYGHHGLITSHPSQ
                     VLRSKSRKSHLLPHRDLDLEPVYFIMSRAGSSSLSIRAVTQEHAGKYTCEATNKHGTT
                     QSEAFLTVVPFETNTKAELVIPSEATQNDERDPRDGPESGSQSLLPVKVHSSGVDLPT
                     QKNASVPDAPHILSPPQTHMPDTYNLVWRAGRDGGLPINAYFVKYRKLDDGTGTVGSW
                     HTVRVPGSENELHLTELEPSSLYEVLMVARSAVGEGQPAMLTFRTSKEKMASSKNTQA
                     SFPPVGIPKRPVISEASNSNFGVVLTDSSRHSGVPEAPDRPTISTASETSVYVTWIPR
                     ANGGSPITAFKVEYKRMRTSDWLVAAEDIPPSKLSVEVRSLEPGSTYKFRVIAINHYG
                     ESFRSSASRPYQVAGFPNRFSNRPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQ
                     GFYIYYRPTDSDNDSDYKRDVVEGSKQWHTIGHLQPETSYDIKMQCFNEGGESEFSNV
                     MICETKVKRVPGASEYPLKDLSTPPSSSGNGGNVGPATSPARSSDMLYLIVGCVLGVM
                     VLILMVFIALCLWKSRQQSAIQKYDPPGYLYQGSEINGQMVEYTTLSGTARINGSVHG
                     GFLSKASLSNGCSHLHHRVPNGVNGVLNGSINGGLYSAHTNSLSRTRVEFEHPHHLVN
                     GGGMYTAVPQIDPLECINCRNCRNNNRCFTKTNSPLPVIPVVASYPQDGLEMKPLSAL
                     KVPVCPTSTLPDCGQLPEESIKDSVAPTPTQHTCCQDNISDINSDSTEDTAEFSRGDR
                     NGHSEAEDKVLSWNPLILSPVLEDCTEKTTWSPGLPLDGLSVVLQQAQET"
     gene            complement(1423111..1423278)
                     /locus_tag="I79_009357"
     ncRNA           complement(1423111..1423278)
                     /ncRNA_class="snRNA"
                     /locus_tag="I79_009357"
                     /product="U1 spliceosomal RNA"
     assembly_gap    1458774..1458875
                     /estimated_length=102
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(1489529..1507938)
                     /locus_tag="I79_009358"
     mRNA            complement(join(1489529..1489590,1491155..1491343,
                     1493158..1493320,1494304..1494451,1500622..1500799,
                     1502230..1502344,1503810..1503912,1506228..1506363,
                     1506961..1507005,1507752..1507938))
                     /locus_tag="I79_009358"
                     /product="ATP-dependent RNA helicase DDX25"
     CDS             complement(join(1489529..1489590,1491155..1491343,
                     1493158..1493320,1494304..1494451,1500622..1500799,
                     1502230..1502344,1503810..1503912,1506228..1506363,
                     1506961..1507005,1507752..1507938))
                     /locus_tag="I79_009358"
                     /note="GO_function: GO:0003676 - nucleic acid binding
                     [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008026 - ATP-dependent helicase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /product="ATP-dependent RNA helicase DDX25"
                     /protein_id="EGW11134.1"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR014021"
                     /db_xref="UniProtKB/Swiss-Prot:Q9QY15"
                     /db_xref="UniProtKB/TrEMBL:Q68G14"
                     /translation="MASLLWGGDAGAAESERLNSHVTAAEQGRVHGRELEQGLPREVP
                     WEGGAPRWRLEWVSSDGGDGSLNTEEDDDEDDVVDLAANSLLNKLIRQSLVESSHRVE
                     VLQKDPSSPLYSVKTFEELRLPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLC
                     LAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTEVTKQIIIGTPGTVLDWC
                     FKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFSATFEDSVWQ
                     FAERIIPDPNVIKLRKEELTLNNIRQYYTRRNAKWLTVEMMQDGHQVSLLSGELTVEQ
                     RASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGR
                     TGRFGKKGLAFNMIEVDKLPLLMKIQDHFNSNIKQLDPEDMDEIEKIEY"
     gene            complement(1510619..1511524)
                     /locus_tag="I79_009359"
     mRNA            complement(1510619..1511524)
                     /locus_tag="I79_009359"
                     /product="Hydrolethalus syndrome 1-like protein"
     CDS             complement(1510619..1511524)
                     /locus_tag="I79_009359"
                     /codon_start=1
                     /product="Hydrolethalus syndrome 1-like protein"
                     /protein_id="EGW11135.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q9CXX0"
                     /db_xref="UniProtKB/TrEMBL:C3KK24"
                     /translation="MGQLIGPGGQKWANMGPEERMLAAATAFTHICAGQGEGDIRREA
                     QATQYDPYSKASVTSGKRPALPVQLHYPPIRSRVTSSSVSEASQKSRKPVMKRKVLRR
                     KPDGEVLVTDESVISESESGTESEVDLWDLRHRLMNLQFQDGTESLSDAPQKFNLPRD
                     YQGISQEDQLICYLQREEMGPPVYEQDLIVASRPKSFILPRLDQLSRNRGKTDRVARY
                     FEYKRDWDSMRFPGEDHRKELRWNVRGQMLSKTEPQYKPQHVYVPNNYLVPTEKKRSA
                     LRWGVRCDLANGVMPKKFPFPLSPS"
     gene            1513767..1516139
                     /locus_tag="I79_009360"
     mRNA            join(1513767..1514141,1514248..1514813,1515638..1516139)
                     /locus_tag="I79_009360"
                     /product="tRNA pseudouridine synthase 3"
     CDS             join(1513767..1514141,1514248..1514813,1515638..1516139)
                     /locus_tag="I79_009360"
                     /note="GO_function: GO:0003723 - RNA binding [Evidence
                     IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /product="tRNA pseudouridine synthase 3"
                     /protein_id="EGW11136.1"
                     /db_xref="InterPro:IPR020097"
                     /db_xref="InterPro:IPR020103"
                     /db_xref="UniProtKB/Swiss-Prot:Q9JI38"
                     /db_xref="UniProtKB/TrEMBL:B0BN58"
                     /translation="MAENTDRNQIEKLLNRVKELEQEVKRLKKEQANSTKDSSIRENS
                     LGSGKAKRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLV
                     ESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSDDSDLKDEADDVAKEIRYT
                     HILNRVLPADIRVLAWAPVEPGFSARFNCLERTYRYFFPRADLDIVTMNYAAQKYVGT
                     HDFRNLCKMDVANGVINFQRTILSAQVQLVTWSLGEERRQEPFQLCQFEVIGQAFLYH
                     QVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWI
                     YDHEVQEFNVTHLQQLCANHAVKTHMLYSKLQGLDSVMITCGAGTKMEEATEWRNIKP
                     SVIKQSSAFVEGVKTRTYKPLMDRPKCEGLESRIQHFVRRGRIEHPHLLHKEETKAKR
                     DCADTEEENTVLENPTKRVCIIDAEINSIV"
     assembly_gap    1531477..1531803
                     /estimated_length=327
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1533161..1533764
                     /estimated_length=604
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1578662..1578981
                     /estimated_length=320
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1602191..1602695
                     /estimated_length=505
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1602957..1603072
                     /estimated_length=116
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1603303..1604317
                     /estimated_length=1015
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1604685..1604839
                     /estimated_length=155
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1604975..1605108
                     /estimated_length=134
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1606150..1606194
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1607189..1607306
                     /estimated_length=118
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1621859..1621941
                     /estimated_length=83
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1626622..1627012
                     /estimated_length=391
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1631706..1631909
                     /estimated_length=204
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1643756..1643793
                     /estimated_length=38
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    1652405..1652467
                     /estimated_length=63
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
CONTIG      join(AFTD01125107.1:1..30473,gap(99),AFTD01125108.1:1..309,
            gap(468),AFTD01125109.1:1..178,gap(31),AFTD01125110.1:1..1030,
            gap(254),AFTD01125111.1:1..527,gap(556),AFTD01125112.1:1..171,
            gap(416),AFTD01125113.1:1..52627,gap(249),AFTD01125114.1:1..7168,
            gap(10),AFTD01125115.1:1..119600,gap(318),AFTD01125116.1:1..136,
            gap(69),AFTD01125117.1:1..308,gap(178),AFTD01125118.1:1..31699,
            gap(68),AFTD01125119.1:1..30615,gap(24),AFTD01125120.1:1..72967,
            gap(14),AFTD01125121.1:1..3526,gap(502),AFTD01125122.1:1..37229,
            gap(45),AFTD01125123.1:1..55661,gap(14),AFTD01125124.1:1..85460,
            gap(237),AFTD01125125.1:1..300,gap(10),AFTD01125126.1:1..97778,
            gap(71),AFTD01125127.1:1..117349,gap(35),AFTD01125128.1:1..13132,
            gap(10),AFTD01125129.1:1..102920,gap(30),AFTD01125130.1:1..100415,
            gap(166),AFTD01125131.1:1..7946,gap(15),AFTD01125132.1:1..2411,
            gap(126),AFTD01125133.1:1..7179,gap(99),AFTD01125134.1:1..35493,
            gap(110),AFTD01125135.1:1..24900,gap(10),AFTD01125136.1:1..17141,
            gap(95),AFTD01125137.1:1..3061,gap(262),AFTD01125138.1:1..61524,
            gap(255),AFTD01125139.1:1..57059,gap(96),AFTD01125140.1:1..30270,
            gap(131),AFTD01125141.1:1..142214,gap(104),AFTD01125142.1:1..2237,
            gap(37),AFTD01125143.1:1..6514,gap(92),AFTD01125144.1:1..2553,
            gap(502),AFTD01125145.1:1..90885,gap(102),AFTD01125146.1:1..72601,
            gap(327),AFTD01125147.1:1..1357,gap(604),AFTD01125148.1:1..44897,
            gap(320),AFTD01125149.1:1..23209,gap(505),AFTD01125150.1:1..261,
            gap(116),AFTD01125151.1:1..230,gap(1015),AFTD01125152.1:1..367,
            gap(155),AFTD01125153.1:1..135,gap(134),AFTD01125154.1:1..1041,
            gap(45),AFTD01125155.1:1..994,gap(118),AFTD01125156.1:1..14552,
            gap(83),AFTD01125157.1:1..4680,gap(391),AFTD01125158.1:1..4693,
            gap(204),AFTD01125159.1:1..11846,gap(38),AFTD01125160.1:1..8611,
            gap(63),AFTD01125161.1:1..3440)
//